|
Name |
Accession |
Description |
Interval |
E-value |
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2-1470 |
0e+00 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 2506.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:COG3096 1 IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 82 KAGVCYSVLDVINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPTSVQPTALLTETLNERQARVLTLQELKDKLEAIE 161
Cdd:COG3096 81 KPGVCYAALDVVNSRGQRLLVGVRLQQVAGRDKKVDIKPFIIQGLPEDVKPTDLLTETLDGRQARVLPLNELKEKAEELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 162 GVQFKQFNSITDYHSLMFDLGVVARRLRTASDRSKYYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 241
Cdd:COG3096 161 GVQFKQFNSITDYHAFMFDLGVTPKRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 242 NRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALEYRRELFTSRKQLVAEQYKHVEMARELGEHNG 321
Cdd:COG3096 241 NRMTLEAIRVTQSDRDLFKHLITEATNYVAADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 322 AEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAADMQEENEARAEAAELEVDELKSQLAD 401
Cdd:COG3096 321 RESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 402 YQQALDVQQTRAIQYTQALQALQRAKELCHLPDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQL 481
Cdd:COG3096 401 YQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 482 VVAINGPLARNEAWDVARELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNYD-FDELEALHQ 560
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDaAEELEELLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 561 ELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERAPVWLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLERER 640
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 641 EAIVERDEVGARKRDVDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVGLDDAPYFSALYGPSRNAIVVPDLSLI 720
Cdd:COG3096 641 EATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAIVVPDLSAV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 721 SEQLAGLEDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPELPLFGRAARESRIESLHAERETLSER 800
Cdd:COG3096 721 KEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLFGRAAREKRLEELRAERDELAEQ 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 801 FATLSFDVQKTQRLHQSFSRFIGSHLAVAFDADPEAEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRIL 880
Cdd:COG3096 801 YAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 881 PRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQVQREARQQAFAL 960
Cdd:COG3096 881 PQANLLADETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAL 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 961 TEVVQRRAHFGYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQK 1040
Cdd:COG3096 961 SEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1041 ELQDIGVRADSGAEERARIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAV 1120
Cdd:COG3096 1041 ELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAV 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1121 MRMVKDNNVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ 1200
Cdd:COG3096 1121 LRLARDNDVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDALRLSEDPRRPERKVQFYIAVYQHLRERIRQ 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1201 DIIRTDDPVEAIEQMEIELGRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRQLNQGLQSVSFGQVNSVRLNVNVR 1280
Cdd:COG3096 1201 DIIRTDDPVEAIEQMEIELARLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNVSFGQVKGVRLNVNIR 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1281 EAHATLLEVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRA 1360
Cdd:COG3096 1281 ETHAQLLDALSEQQEQHQDLFFSNRLTFSEALAKLYQRLNPHIDMGQRSPQTIGEELLDYRNYLELEVEVNRGADGWLRA 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1361 ESGALSTGEAIGTGMSILVMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLDMQLIIAAPENISP 1440
Cdd:COG3096 1361 ESGALSTGEAIGTGMSILLMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENISP 1440
|
1450 1460 1470
....*....|....*....|....*....|
gi 556426079 1441 EKGTTYKLVRKVFQNSEHVHVVGLRGFAPQ 1470
Cdd:COG3096 1441 EKGTTYKLVRKVFNNQEHVHVVGLRGFGQE 1470
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1-1483 |
0e+00 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 2472.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1 MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
Cdd:PRK04863 1 MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 81 LKAGVCYSVLDVINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPTSVQPTALLTETLNERQARVLTLQELKDKLEAI 160
Cdd:PRK04863 81 LKAGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 161 EGVQFKQFNSITDYHSLMFDLGVVARRLRTASDRSKYYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
Cdd:PRK04863 161 EGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 241 ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALEYRRELFTSRKQLVAEQYKHVEMARELGEHN 320
Cdd:PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 321 GAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAADMQEENEARAEAAELEVDELKSQLA 400
Cdd:PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 401 DYQQALDVQQTRAIQYTQALQALQRAKELCHLPDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQ 480
Cdd:PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 481 LVVAINGPLARNEAWDVARELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNY-DFDELEALH 559
Cdd:PRK04863 481 LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLdDEDELEQLQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 560 QELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERAPVWLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLERE 639
Cdd:PRK04863 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 640 REAIVERDEVGARKRDVDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVGLDDAPYFSALYGPSRNAIVVPDLSL 719
Cdd:PRK04863 641 RELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 720 ISEQLAGLEDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPELPLFGRAARESRIESLHAERETLSE 799
Cdd:PRK04863 721 AAEQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAE 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 800 RFATLSFDVQKTQRLHQSFSRFIGSHLAVAFDADPEAEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRI 879
Cdd:PRK04863 801 RYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 880 LPRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQVQREARQQAFA 959
Cdd:PRK04863 881 LPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 960 LTEVVQRRAHFGYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQ 1039
Cdd:PRK04863 961 LTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELK 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1040 KELQDIGVRADSGAEERARIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCA 1119
Cdd:PRK04863 1041 QELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1120 VMRMVKDNNVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIR 1199
Cdd:PRK04863 1121 VLRLVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1200 QDIIRTDDPVEAIEQMEIELGRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRQLNQGLQSVSFGQVNSVRLNVNV 1279
Cdd:PRK04863 1201 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQVKSVRLNVNV 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1280 REAHATLLEVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLR 1359
Cdd:PRK04863 1281 RETHAMLLDALSEQQEQHQDLFNSARLTFSEALAKLYQRLNPHIDMGQRTPQTIGEELLDYRNYLELEVEVNRGADGWLR 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1360 AESGALSTGEAIGTGMSILVMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLDMQLIIAAPENIS 1439
Cdd:PRK04863 1361 AESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENIS 1440
|
1450 1460 1470 1480
....*....|....*....|....*....|....*....|....
gi 556426079 1440 PEKGTTYKLVRKVFQNSEHVHVVGLRGFAPQPPESLPETTADAS 1483
Cdd:PRK04863 1441 PEKGTTYKLVRKVFNNREHVHVVGLRGFAQLLPDTLPGQDEAES 1484
|
|
| MukB |
pfam04310 |
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of ... |
2-227 |
1.78e-138 |
|
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Pssm-ID: 427856 [Multi-domain] Cd Length: 226 Bit Score: 424.20 E-value: 1.78e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:pfam04310 1 IERGKFQSLTMINWNGFFARTFDLDQLVTTLSGGNGAGKSTTMAAFITALIPDLSLLHFRNTTEAGSTSGSRDKGLYGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 82 KAGVCYSVLDVINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPTSVQPTALLTETLNERQARVLTLQELKDKLEAIE 161
Cdd:pfam04310 81 QAGHCYSAIDVANSRGQRLWFGVHLQQVAGRDRKVDITPFAIQGLPEDVQPTDVLLERLDDGHARVRSLNELKDAAAELG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556426079 162 GVQFKQFNSITDYHSLMFDLGVVARRLRTASDRSKYYRLIEASLYGGISSAITRSLRDYLLPENSG 227
Cdd:pfam04310 161 GARFKQFNSITDYHNFMFDMGVTPKKLRDQRDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 226
|
|
| MukB_hinge |
pfam16330 |
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for ... |
644-810 |
3.53e-79 |
|
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for dimerization and is also involved in protein-DNA interactions and conformational flexibility.
Pssm-ID: 435281 [Multi-domain] Cd Length: 167 Bit Score: 258.04 E-value: 3.53e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 644 VERDEVGARKRDVDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVGLDDAPYFSALYGPSRNAIVVPDLSLISEQ 723
Cdd:pfam16330 1 QERDELAARKERLEKEIERLLQPGGSEDPRLPRLAERLGGVLLSEIYDDISLEDAPYFSALYGPARHAIVVPDLSDAADK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 724 LAGLEDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPELPLFGRAARESRIESLHAERETLSERFAT 803
Cdd:pfam16330 81 LNGLEDCPDDLYLIEGDPDSFDESAFSAEELEDAVLVHDSDRQLRYSRFPEVPLFGRAAREKRLEALRAEREELAERYAK 160
|
....*..
gi 556426079 804 LSFDVQK 810
Cdd:pfam16330 161 LAFDVQK 167
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1110 |
3.90e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 3.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 345 RQQEKIERY---EADLDELQIRL------------EEQNEVVAEAADMQEENEARAEAAELEVDELKSQLADYQQALDVQ 409
Cdd:TIGR02168 207 RQAEKAERYkelKAELRELELALlvlrleelreelEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 410 QTRAIQYTQALQAL----QRAKELCHLPDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAI 485
Cdd:TIGR02168 287 QKELYALANEISRLeqqkQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 486 NGPL-ARNEAWDVARELLRDGVNQrhLAEQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNYDFDELEALHQELEA 564
Cdd:TIGR02168 367 LEELeSRLEELEEQLETLRSKVAQ--LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 565 RIAALSDTVsnasEQRMALRQELEQIQSRSKALLERApvwLAAQSSLNQLSEQCgeqfESSQEVTEYLQQLLEREREAIV 644
Cdd:TIGR02168 445 LEEELEELQ----EELERLEEALEELREELEEAEQAL---DAAERELAQLQARL----DSLERLQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 645 ERDEVGArkrDVDEEIERLSQPGGSEDPRLNALAERFGGVLLSeiyddvglDDAPYFSALYGPSRNAI---VVPDLSLIS 721
Cdd:TIGR02168 514 NQSGLSG---ILGVLSELISVDEGYEAAIEAALGGRLQAVVVE--------NLNAAKKAIAFLKQNELgrvTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 722 EQLAgLEDCPEDLYLIEGDPQSFDDSVFSVDELEKAVV-----VKIADRqwrysrfpelplfGRAARESRIESLHaeret 796
Cdd:TIGR02168 583 GTEI-QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggVLVVDD-------------LDNALELAKKLRP----- 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 797 lSERFATLSFDvqktqRLHQSFSRFIGSHLAVAFDADPEAEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAAL 876
Cdd:TIGR02168 644 -GYRIVTLDGD-----LVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 877 NRILPRLNLLADDTLADrvdeIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQ-FEQLKEDYAWSQQVQREARQ 955
Cdd:TIGR02168 718 RKELEELSRQISALRKD----LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaEEELAEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 956 QAFALTEvvQRRAHFGYSDSAEMLSGNSDlneKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELL 1035
Cdd:TIGR02168 794 LKEELKA--LREALDELRAELTLLNEEAA---NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556426079 1036 NDLQKELQDIGVRADSGAEERARIR--RDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQV 1110
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRseLEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
394-1265 |
7.24e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 7.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 394 ELKSQLadyqQALDVQQTRAIQYtQALQALQRAKELcHLPDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHS 473
Cdd:TIGR02168 197 ELERQL----KSLERQAEKAERY-KELKAELRELEL-ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 474 QFE----QAYQLVVAINGPL--ARNEAWDVARELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEfckrqg 547
Cdd:TIGR02168 271 ELRlevsELEEEIEELQKELyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE------ 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 548 knyDFDELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERApvwLAAQSSLNQLSEQcGEQFESSQE 627
Cdd:TIGR02168 345 ---KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI---ASLNNEIERLEAR-LERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 628 VTEYLQQLLEREREAiVERDEVGARKRDVDEEIERLSQPGGSEDPRLNALAERFggVLLSEIYDDVGLDDAPYFSALY-- 705
Cdd:TIGR02168 418 RLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELERLEEALEELREEL--EEAEQALDAAERELAQLQARLDsl 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 706 --------GPSRNaivVPDLSLISEQLAGLEDCPEDlyLIEGDPqsfddsvfsvdELEKA-----------VVVKIADRQ 766
Cdd:TIGR02168 495 erlqenleGFSEG---VKALLKNQSGLSGILGVLSE--LISVDE-----------GYEAAieaalggrlqaVVVENLNAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 767 WRYSRFPELPLFGRAA-------RESRIESLHAERETLSERFATLSFDVQKTQRLHQSFSRFIGSHLAVAFDADPEAEIR 839
Cdd:TIGR02168 559 KKAIAFLKQNELGRVTflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 840 KLNTRRselERAIAsheSDNQQSRVQFEQAKEGVAALNRILPRLNLLAD-----DTLADRVDEIQERLDEAQEAARFVQQ 914
Cdd:TIGR02168 639 KKLRPG---YRIVT---LDGDLVRPGGVITGGSAKTNSSILERRREIEEleekiEELEEKIAELEKALAELRKELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 915 HGNQLAKLEPVVSVLQSdpEQFEQLKEDYAWSQQVQREARQQAFALTEVVQRRahfgysdsaemlsgnsdlnEKLRQRLE 994
Cdd:TIGR02168 713 ELEQLRKELEELSRQIS--ALRKDLARLEAEVEQLEERIAQLSKELTELEAEI-------------------EELEERLE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 995 QAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGVRADSGAEERARIRR--DELHSQLSNNR 1072
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERrlEDLEEQIEELS 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1073 ARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVkdNNVERRLHRRELAYLSADELRSMSDK 1152
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL--RELESKRSELRRELEELREKLAQLEL 929
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1153 ALGALRLAVADN-EHLRDVLRMS-EDPKRPERKIQFFVAVYQHLRERIRQDIIRTdDPV--EAIEQMEIELGRLtEELTS 1228
Cdd:TIGR02168 930 RLEGLEVRIDNLqERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKIKEL-GPVnlAAIEEYEELKERY-DFLTA 1007
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 556426079 1229 REQKLAISSRSVANIIRK----TIQREQNRIRQLNQGLQSV 1265
Cdd:TIGR02168 1008 QKEDLTEAKETLEEAIEEidreARERFKDTFDQVNENFQRV 1048
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
280-1101 |
1.92e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 280 ERRVHLDQALEYRRELFTSRKQLVAEQYKHVEMARELgehNGAEGDLEadyQAASDHLNLVQTALRQQEKIERYEADLDE 359
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAEL---QELEEKLE---ELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 360 LQIRLEEQNEVVAEAADMQEENEARAEAAELEVDELKSQLADYQQALDVQQTraiQYTQALQALQRAKELCHLPDLTPDS 439
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE---ELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 440 ADEWLDTFQAKEQEATEKLLSLEqkmsvaqtahSQFEQAYQLVVAINGPLARNEAWDVARELLRDGVNQRHLAEQVQPLR 519
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLN----------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 520 MRLNELEQRLREQQEAERLLAEfcKRQGKNYDFDELEALHQELEARIAALSDTVSNASE------QRMALRQELEQIQSR 593
Cdd:TIGR02168 447 EELEELQEELERLEEALEELRE--ELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 594 SKALLERAPVWLAA-----QSSLNQLseqCGEQFESSQEVTEYLQQlLEREREAIVERDEVGARKRDVDEEIERLSQPGG 668
Cdd:TIGR02168 525 LSELISVDEGYEAAieaalGGRLQAV---VVENLNAAKKAIAFLKQ-NELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 669 --------SEDPRL-NALAERFGGVLLSEIYDDvGLDDAPYFSALYgpsrnAIVVPDLSLISEQlagledcpedlYLIEG 739
Cdd:TIGR02168 601 lgvakdlvKFDPKLrKALSYLLGGVLVVDDLDN-ALELAKKLRPGY-----RIVTLDGDLVRPG-----------GVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 740 DPQSFDDSVFS----VDELEKAVvvkiadrqwrysrfpelplfgrAARESRIESLHAERETLSERFATLSFDVQKTQRLH 815
Cdd:TIGR02168 664 GSAKTNSSILErrreIEELEEKI----------------------EELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 816 QSFSRFIGSHLAVAFDADPEAE-----IRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRILPRLNLLAdDT 890
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEqleerIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-KA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 891 LADRVDEIQERL----DEAQEAARFVQQHGNQLAKLEPVVSVLQsdpEQFEQLKEDYAWSQQVQREARQQAFALTEVVQr 966
Cdd:TIGR02168 801 LREALDELRAELtllnEEAANLRERLESLERRIAATERRLEDLE---EQIEELSEDIESLAAEIEELEELIEELESELE- 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 967 RAHFGYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQK-ELQDI 1045
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEA 956
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556426079 1046 G--VRADSGAEERARIRRDELHSQLSN----NRARRNQLEKA---LTFCEAEMDNLTRRLRKLER 1101
Cdd:TIGR02168 957 EalENKIEDDEEEARRRLKRLENKIKElgpvNLAAIEEYEELkerYDFLTAQKEDLTEAKETLEE 1021
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
1335-1425 |
5.14e-14 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 68.80 E-value: 5.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1335 EELLDYRNYLEMEVEVNR--GSDGWLRAESGALSTGEAIGTGMSILV--MVVQSWEDEARRlrgkdiSPCRLLFLDEA-A 1409
Cdd:pfam13558 1 ARVLDYRNWLSFEVEVRDedGSEVETYRRSGGLSGGEKQLLAYLPLAaaLAAQYGSAEGRP------PAPRLVFLDEAfA 74
|
90
....*....|....*.
gi 556426079 1410 RLDARSIATLFELCER 1425
Cdd:pfam13558 75 KLDEENIRTALELLRA 90
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-943 |
8.38e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 8.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 287 QALEYRRELFTSRKQLVAEQYKHVEMARELGEHNGAEGDLEAdyqaasdhlnlvQTALRQQEKIeryEADLDELQIRLEE 366
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL------------EELEAELAEL---EAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 367 QNEVVAEAadmqeenearaeaaELEVDELKSQLADYQQALDVQQTRAIQYTQALQALQRAKElchlpdltpdSADEWLDT 446
Cdd:COG1196 279 LELELEEA--------------QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA----------ELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 447 FQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGPLARnEAWDVARELLRDGVNQRHLAEQVQPLRMRLNELE 526
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-ELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 527 QRLREQQEAERllaefckrqgknydfdELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERAPVWLA 606
Cdd:COG1196 414 ERLERLEEELE----------------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 607 AQSSLNQLSEQCGEQFESSQEvteyLQQLLEREREAIVERDEVGARKRDVDEEIERLSQPGGSEDPRLNALAERFGGVLL 686
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLE----AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 687 SeiyDDVGLDDAPYFSALYGPSRNAIVVPDLSLISEQLAGLEDCPEDLYLIEG--DPQSFDDSVFSVDELEKAVVVKIAD 764
Cdd:COG1196 554 E---DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvaSDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 765 RQWRYSRFPELPLFGRAARESRIESLHAERETLSERFATLSFDVQKTQRLHQsfsrfigshLAVAFDADPEAEIRKLNTR 844
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE---------ELAERLAEEELELEEALLA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 845 RSELERAIASHESDNQQSRVQFEQAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEP 924
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
650 660
....*....|....*....|..
gi 556426079 925 VvsvlqsDP---EQFEQLKEDY 943
Cdd:COG1196 782 V------NLlaiEEYEELEERY 797
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-1435 |
1.21e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.94 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 414 IQYTQALQALQRAKELCHLPDLTPDSADEWLDTFQAKE-----QEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGP 488
Cdd:COG4913 188 IGSEKALRLLHKTQSFKPIGDLDDFVREYMLEEPDTFEaadalVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 489 LARNEAWDVARELLRDGVNQRHLAEqvqpLRMRLNELEQRLREQQEAERLLAEfckrqgknyDFDELEALHQELEARIAA 568
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLEL----LEAELEELRAELARLEAELERLEA---------RLDALREELDELEAQIRG 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 569 LS-DTVSNASEQRMALRQELEQIQSRSKALLER-APVWLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREAIVER 646
Cdd:COG4913 335 NGgDRLEQLEREIERLERELEERERRRARLEALlAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 647 DEVGARKRDVDEEIERLSQPGGSEDPRL----NALAE---------RFGGVLLseiydDVGLDDAPYFSA---LYGPSRN 710
Cdd:COG4913 415 RDLRRELRELEAEIASLERRKSNIPARLlalrDALAEalgldeaelPFVGELI-----EVRPEEERWRGAierVLGGFAL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 711 AIVVPdlsliseqlagledcpedlyliegdPQSFDDSVFSVDELEKAVVVkiadrqwRYSRFPElplfgraaRESRIESL 790
Cdd:COG4913 490 TLLVP-------------------------PEHYAAALRWVNRLHLRGRL-------VYERVRT--------GLPDPERP 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 791 HAERETLSERfatLSFDVQKtqrlhqsFSRFIGSHLAVAFD---ADPEAEIRklNTRRSELERAIASHesdnqqSRVQFE 867
Cdd:COG4913 530 RLDPDSLAGK---LDFKPHP-------FRAWLEAELGRRFDyvcVDSPEELR--RHPRAITRAGQVKG------NGTRHE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 868 QAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQsdpeqfeqlkeDYAWSQ 947
Cdd:COG4913 592 KDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA-----------EYSWDE 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 948 QVQREARQQAFALTEVVQRrahfgysdsaeMLSGNSDLnEKLRQRLEQAEAERTRAREamrshsaQLNQYNQVLASLKSS 1027
Cdd:COG4913 661 IDVASAEREIAELEAELER-----------LDASSDDL-AALEEQLEELEAELEELEE-------ELDELKGEIGRLEKE 721
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1028 FDTKKELLNDLQKELQDIGVRADSGAEERARIRRDELHSQLSNNRARRNqLEKALTFCEAEMDNLTRRLRKLERDYhemr 1107
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN-LEERIDALRARLNRAEEELERAMRAF---- 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1108 eqvvtakagwcavmrmvkdnnveRRLHRRELAYLSADelrsmsdkalgalrlaVADNEHLRDVLRmsedpkrperkiqff 1187
Cdd:COG4913 797 -----------------------NREWPAETADLDAD----------------LESLPEYLALLD--------------- 822
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1188 vavyqhlreRIRQDiirtddpveaieqmeiELGRLTEELtsREQKLAISSRSVANI---IRKTIQREQNRIRQLNQGLQS 1264
Cdd:COG4913 823 ---------RLEED----------------GLPEYEERF--KELLNENSIEFVADLlskLRRAIREIKERIDPLNDSLKR 875
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1265 VSFGQ------VNSVRLNVNVREAHATLLEVLSeqheqHQDLFNSN-RLTFSEALAKLYQRL---NPQIDMGQRtpqtig 1334
Cdd:COG4913 876 IPFGPgrylrlEARPRPDPEVREFRQELRAVTS-----GASLFDEElSEARFAALKRLIERLrseEEESDRRWR------ 944
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1335 EELLDYRNYLEMEVEVNRGSDG---WLRAESGALSTGE-----AIGTGMSIlvmvvqswedeARRLRGKDISP--CRLLF 1404
Cdd:COG4913 945 ARVLDVRNHLEFDAEEIDREDGeevETYSSSGGKSGGEkqklaYFILAAAL-----------AYQLGLEGRGRpsFRTVV 1013
|
1050 1060 1070
....*....|....*....|....*....|..
gi 556426079 1405 LDEA-ARLDARSIATLFELCERLDMQLIIAAP 1435
Cdd:COG4913 1014 LDEAfSKMDEEFARRALRLFKELGLQLLIATP 1045
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-1002 |
1.48e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 347 QEKIERYEADLDELQI----------RLEEQNEVVAEAADMQEENEARAEAAE-LEVDELKSQLADYQQALDVQQTRAIQ 415
Cdd:COG1196 178 ERKLEATEENLERLEDilgelerqlePLERQAEKAERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 416 YTQALQALQRAKELChlpDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAyqlvvaingpLARNEAw 495
Cdd:COG1196 258 LEAELAELEAELEEL---RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER----------LEELEE- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 496 dvarELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEfcKRQGKNYDFDELEALHQELEARIAALSDTVSN 575
Cdd:COG1196 324 ----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE--ALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 576 ASEQRMALRQELEQIQSRSKALLERApvwLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREAIVERDEVGARKRD 655
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEEL---EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 656 VDEEIERLSQPGGSEDPRLNALAERfggvllseiyddvglddAPYFSALYGPSRNAIVVPDLSLISEQLAGLEDCPEDLY 735
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEA-----------------EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 736 LIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPELPLfgRAARESRIESLHAERETLSERFATLSFDVQKTQRLH 815
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL--DKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 816 QSFSRFIGSHLAVAfdADPEAEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRILPRLNLLADDTLADRV 895
Cdd:COG1196 616 YVLGDTLLGRTLVA--ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 896 DEIQERLDEAQEAARFVQQHGNQLAKLEpvvsvlqsdpeqfeqlkedyawsQQVQREARQQAFALTEVVQRRAHFGYSDS 975
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEEL-----------------------EEEALEEQLEAEREELLEELLEEEELLEE 750
|
650 660
....*....|....*....|....*...
gi 556426079 976 AEMLSGNSDLN-EKLRQRLEQAEAERTR 1002
Cdd:COG1196 751 EALEELPEPPDlEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
836-1128 |
5.06e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 5.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 836 AEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDEAQeaarfvqqh 915
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE--------- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 916 gNQLAKLEPVVSVLQSDPEQFE-QLKEDYAWSQQVQREARQQAFALTEVVQRRAHFG--YSDSAEMLsgnsdlnEKLRQR 992
Cdd:TIGR02169 301 -AEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeYAELKEEL-------EDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 993 LEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDI-----GVRADSGA------EERARIRR 1061
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLnaaiaGIEAKINEleeekeDKALEIKK 452
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1062 DElhSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEM---REQVVTAKAGWCAVMRMVKDNN 1128
Cdd:TIGR02169 453 QE--WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeaqARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
518-1317 |
2.82e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 518 LRMRLNELEQRLREQQEaerllaefckrqgknyDFDELEALHQELEARIAALSDTVSNAsEQRMALRQELEQIQSRSKAL 597
Cdd:TIGR02168 170 YKERRKETERKLERTRE----------------NLDRLEDILNELERQLKSLERQAEKA-ERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 598 lerapVWLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREAIVERDEVGARKRDVDEEIERLSQPGGSEDPRLNAL 677
Cdd:TIGR02168 233 -----RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 678 AERFGGVLLSEIYDDVGLDDAPyfsalygpSRNAIVVPDLSLISEQLAGLEDCPEDLyliegdPQSFDDSVFSVDELEKA 757
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELE--------SKLDELAEELAELEEKLEELKEELESL------EAELEELEAELEELESR 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 758 VvvKIADRQWRYSRFpelplfGRAARESRIESLHAERETLSERfatlsfdVQKTQRLHQSFSRFIGSHLAVAFDADPEAE 837
Cdd:TIGR02168 374 L--EELEEQLETLRS------KVAQLELQIASLNNEIERLEAR-------LERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 838 IRKLNTRRSELERAIASHESDNQQ---SRVQFEQAKEGVAALNRILPRLNlladdTLADRVDEIQERLDEAQEAARFVQQ 914
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEAleeLREELEEAEQALDAAERELAQLQ-----ARLDSLERLQENLEGFSEGVKALLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 915 HGNQLAKLEPVVSVLQSDPEQFEQLKEDY--AWSQQV----QREARQQAFALTEVVQRRAHFGYSDSAEMLSGNSDLNEK 988
Cdd:TIGR02168 514 NQSGLSGILGVLSELISVDEGYEAAIEAAlgGRLQAVvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 989 LRQ---------RLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSfdTKKELLNDLQKELQDIG-------VRADSG 1052
Cdd:TIGR02168 594 LKNiegflgvakDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKL--RPGYRIVTLDGDLVRPGgvitggsAKTNSS 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1053 AEERaRIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAVMRmvKDNNVERR 1132
Cdd:TIGR02168 672 ILER-RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA--EVEQLEER 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1133 LHRRELAYLSADELRSMSDKALGALRLAVADNEHLR-----DVLRMSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDD 1207
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeeleaQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1208 PVEAIEQMEIELGRLTEELTSREQKLAISSRSVANI------IRKTIQREQNRIRQLNQGLQSVSF------GQVNSVRL 1275
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELeelieeLESELEALLNERASLEEALALLRSeleelsEELRELES 908
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 556426079 1276 NVNVREAHATLLEVLSEQHEQHQDLFNSNRLTFSEALAKLYQ 1317
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
345-1114 |
5.17e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 5.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 345 RQQEKIERYEADLDELQIRleEQNEVVAEAADMqeenEARAEAAELEVDELKSQLADYQQALdvqQTRAIQYTQALQALQ 424
Cdd:TIGR02169 205 REREKAERYQALLKEKREY--EGYELLKEKEAL----ERQKEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 425 RAKElchlpDLTPDSADEWLdTFQAKEQEATEKLLSLEQKMSVAQTAHSQFE-QAYQLVVAINGPLARNEawDVARELLR 503
Cdd:TIGR02169 276 ELNK-----KIKDLGEEEQL-RVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLAEIE--ELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 504 DGVNQRHLAEQVQPLRMRLNELEQRLRE-QQEAERLLAEFCKRQGKnydFDELEALHQELEARIAALSDTVSNASEQRMA 582
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEvDKEFAETRDELKDYREK---LEKLKREINELKRELDRLQEELQRLSEELAD 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 583 LRQELEQIQSRSKALLER-----APVWlAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREAIVERDEVGARKRDVD 657
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEkedkaLEIK-KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 658 EEierlsQPGGSEDPRLnaLAERFGGVLLSeiYDDVGLDDAPYFSAL---YGPSRNAIVVPDLSLISEqlagledCPEDL 734
Cdd:TIGR02169 504 ER-----VRGGRAVEEV--LKASIQGVHGT--VAQLGSVGERYATAIevaAGNRLNNVVVEDDAVAKE-------AIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 735 YLIEGDPQSF------DDSVFSVDELEKAVVVKIA------DRQWRysrfpelPLFGRAARESRI-ESLHAERETLSE-R 800
Cdd:TIGR02169 568 KRRKAGRATFlplnkmRDERRDLSILSEDGVIGFAvdlvefDPKYE-------PAFKYVFGDTLVvEDIEAARRLMGKyR 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 801 FATLSFDVqktqrLHQSFSRFIGS---HLAVAFDADPEAEIRKLNTRRSELER--AIASHESDNQQSRVQ--FEQAKEGV 873
Cdd:TIGR02169 641 MVTLEGEL-----FEKSGAMTGGSrapRGGILFSRSEPAELQRLRERLEGLKRelSSLQSELRRIENRLDelSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 874 AALNRILPRLNLLADD--TLADRVDEIQERLDEAQEAARfvqqhgNQLAKLEPVVSVLQSDPEQFEQLKEdyawsqqvqr 951
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEeeKLKERLEELEEDLSSLEQEIE------NVKSELKELEARIEELEEDLHKLEE---------- 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 952 earqqafALTEVVQRRAHFGYsdsaemlsgnsdlnEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTK 1031
Cdd:TIGR02169 780 -------ALNDLEARLSHSRI--------------PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1032 KELLNDLQKELQDIGVRADSGaeeraRIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVV 1111
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENL-----NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
...
gi 556426079 1112 TAK 1114
Cdd:TIGR02169 914 KKR 916
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
498-1100 |
1.19e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 498 ARELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEAERllaefckrqgknydfdELEALHQELEARIAALSDTVSNAS 577
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEY----------------ELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 578 EQRMALRQELEQIQSRSKALLERAPVWLAAQSSLNQLSEQCGEQFESS-QEVTEYLQQLLEREREAIVERDEVGARKRDV 656
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 657 DEEIERLSQPGGSEDPRLNALAERfggvllseiyddvglddapyfsalygpsrnaivvpdLSLISEQLAGLEDCPEDLYL 736
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERL------------------------------------EEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 737 IEGDPQSFDDSVFSVDELEKAVVVKIADRQWRysrfpelplfgRAARESRIESLHAERETLSERFATLsfdvQKTQRLHQ 816
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEE-----------AALLEAALAELLEELAEAAARLLLL----LEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 817 SFSRFIGSHLAVAFDADPEAEIRKLNTRRSELERAIASHESDNQQSRV--QFEQAKEGVAAL-NRILPRLNLLADDTLAD 893
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVveDDEVAAAAIEYLkAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 894 RvdEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQsdpEQFEQLKEDYAWSQQVQREARQQAFALTEVVQRRAHFGYS 973
Cdd:COG1196 585 R--AALAAALARGAIGAAVDLVASDLREADARYYVLG---DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 974 DSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGVRadsga 1053
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER----- 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 556426079 1054 eERARIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLE 1100
Cdd:COG1196 735 -EELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
511-1111 |
1.33e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 511 LAEQVQPLR------MRLNELEQRLREQQEAERLLaefcKRQGKNYDFDELEALHQELEARIAALSDTVSNASEQRMALR 584
Cdd:COG1196 198 LERQLEPLErqaekaERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 585 QELEQIQSRSKALLERApvwLAAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREAIVERDEVGARKRDVDEEIERLs 664
Cdd:COG1196 274 LELEELELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 665 qpggseDPRLNALAERFGgvllseiyddvglddapyfsalygpSRNAIVVPDLSLISEQLAGLEDCPEDLYLIEGDPQSF 744
Cdd:COG1196 350 ------EEELEEAEAELA-------------------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 745 DDSVFSVDELEKAVVVKIADRQWRysrfpelplfgRAARESRIESLHAERETLSERFATLSFDVQKTQRLHQSFSRFIGS 824
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 825 HLAVAfdadpEAEIRKLNTRRSELERAIASHESDnQQSRVQFEQAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDE 904
Cdd:COG1196 468 LLEEA-----ALLEAALAELLEELAEAAARLLLL-LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 905 AQEAARFVQQHGNQLAKLEPVVSVLQSDPE------QFEQLKEDYAWSQQVQREARQQAFALTEVVQRRAHFGYSDSAEM 978
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 979 LSGNSDLNEKLRQRLEQAEAERTRAREAmRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGVRADSGAEERAR 1058
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREV-TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 556426079 1059 IRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVV 1111
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
8-53 |
1.56e-06 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 46.82 E-value: 1.56e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 556426079 8 RSLTLINWNGFFARTFDLDELVTTL-SGGNGAGKSTTMAAFVTALIP 53
Cdd:pfam13555 2 TRLQLINWGTFDGHTIPIDPRGNTLlTGPSGSGKSTLLDAIQTLLVP 48
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
775-1060 |
1.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 775 LPLFGRAARESRIESLHAERETLSERFATLSFDVQKTQRLHQSFSRFIGSHLAVAFDAdpEAEIRKLNTRRSELERAIAS 854
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL--ARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 855 HESDNQQSRVQFEQAKEGVAALNRILPRLNlladdtladRVDEIQERL--DEAQEAARFVQQHGnqlaklepvvSVLQSD 932
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLG---------RQPPLALLLspEDFLDAVRRLQYLK----------YLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 933 PEQFEQLKEDYAWSQQVQREARQQAFALTEVVQRrahfgysdsaemlsgnsdlNEKLRQRLEQAEAERtraREAMRSHSA 1012
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAE-------------------LEEERAALEALKAER---QKLLARLEK 206
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 556426079 1013 QLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGVRADSGAEERARIR 1060
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
214-680 |
1.08e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 214 TRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAirvTQSDRDLFKHLISEATNYV-----AADYMRHANERRVHLDQA 288
Cdd:PRK02224 235 TRDEADEVLEEHEERREELETLEAEIEDLRETIAE---TEREREELAEEVRDLRERLeeleeERDDLLAEAGLDDADAEA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 289 LEYRRELFTSRKQLVAEQYKHVEMAreLGEHNG-AEG------DLEADYQAASDHLNLVQTALRQ-QEKIERYEADLDEL 360
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVA--AQAHNEeAESlredadDLEERAEELREEAAELESELEEaREAVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 361 QIRLEEQNEVVAEAADMQEENEARAEAAELEVDELKSQLADYQQALDVQQTRaIQYTQALQALQRAKElCHLPdlTPDSA 440
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPE-CGQP--VEGSP 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 441 D-EWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLRDGVNQRhlAEQVQPLR 519
Cdd:PRK02224 466 HvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK--RERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 520 MRLNELEQRLREQQEA---ERLLAEFCKRQGKNYDfDELEALHQELEA--RIAALSDTVSNASEQRMALRQELEQIQSRS 594
Cdd:PRK02224 544 ERAAELEAEAEEKREAaaeAEEEAEEAREEVAELN-SKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAELN 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 595 KALLERapvwLAAQSS-LNQLSEQC-GEQFESSQE----VTEYLQQLLEREREAIVERDEVGARKRDVDEEIERLSqpgg 668
Cdd:PRK02224 623 DERRER----LAEKRErKRELEAEFdEARIEEAREdkerAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE---- 694
|
490
....*....|..
gi 556426079 669 SEDPRLNALAER 680
Cdd:PRK02224 695 ELRERREALENR 706
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
8-428 |
1.61e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 8 RSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLL--------HFRNTTEA----GATSGSRD 74
Cdd:COG4913 4 QRLQLINWGTFDGVhTIDFDGRGTLLTGDNGSGKSTLLDAIQTLLVPAKRPRfnkaandaGKSDRTLLsyvrGKYGSERD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 75 KGLHGK--LKAGVCYSVLDV---INSRHQRVVVGVRLQQVAGRDRKVDIKPFAIqglptsVQPTALLTETLNERqARVLT 149
Cdd:COG4913 84 EAGTRPvyLRPGDTWSAIAAtfaNDGSGQTVTLAQVFWLKGDASSLGDVKRFFV------IADGPLDLEDFEEF-AHGFD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 150 LQELKDKLEAIegvQFKQFNSITDYHSLMfdlgvvARRLRTASDrsKYYRLieasLYGGIS----SAITRSLRDYLLPEn 225
Cdd:COG4913 157 IRALKARLKKQ---GVEFFDSFSAYLARL------RRRLGIGSE--KALRL----LHKTQSfkpiGDLDDFVREYMLEE- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 226 sgvRKAFQDMEAALrENRMTL----EAIRVTQSDRDLFKHLISEATNYVAADymrhanERRVHLDQALEYRRELFTSRKQ 301
Cdd:COG4913 221 ---PDTFEAADALV-EHFDDLerahEALEDAREQIELLEPIRELAERYAAAR------ERLAELEYLRAALRLWFAQRRL 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 302 LVAEQyKHVEMARELGEHNGAEGDLEADYQAASDHLNLVQTALRQQ--EKIERYEADLDELQIRLEEQNEVVAEAADMQE 379
Cdd:COG4913 291 ELLEA-ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEALLA 369
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 556426079 380 ENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ-YTQALQALQRAKE 428
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEaLAEAEAALRDLRR 419
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
339-597 |
2.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 339 LVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAAdmqeenearaeaaeLEVDELKSQLADYQQALDVQQTRAIQYTQ 418
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALK--------------KEEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 419 ALQALQRAkelchlpdltpdsadewLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGplarNEAWDVA 498
Cdd:COG4942 77 ELAALEAE-----------------LAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSP----EDFLDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 499 RELLRDGVNQRHLAEQVQPLRMRLNELEQRLREQQEaerllaefcKRQGKNYDFDELEALHQELEARIAALSDTVSNASE 578
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEA---------ERAELEALLAELEEERAALEALKAERQKLLARLEK 206
|
250
....*....|....*....
gi 556426079 579 QRMALRQELEQIQSRSKAL 597
Cdd:COG4942 207 ELAELAAELAELQQEAEEL 225
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
882-1185 |
6.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 882 RLNLLADDTLADRVDEIQERLDEAQEAArfvQQHGNQLAKLEPVVSVLQsdpEQFEQLKEDYAWSQQVQREARQQafaLT 961
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAEL---EELEAELAELEAELEELR---LELEELELELEEAQAEEYELLAE---LA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 962 EVVQRRAHfgysdsaemlsgNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKE 1041
Cdd:COG1196 299 RLEQDIAR------------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1042 LQDIGVRADSGAEERARIRRDELHSQlsnnrARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAgwcavm 1121
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEAL-----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE------ 435
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556426079 1122 rmvKDNNVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQ 1185
Cdd:COG1196 436 ---EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-665 |
7.02e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 7.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 136 LTETLNERQARVLTLQELKDKLEA-IEGVQFKQFNSITDYHSLMFDLGVVARRLRTASDRSKYYRLIEASLYGGISSait 214
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQqKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--- 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 215 rslrdyLLPENSGVRKAFQDMEAALRENRMTLEAIRvtqsdRDLFKHLISEATNyvaadymrhaNERRVHLD---QALEY 291
Cdd:TIGR02168 356 ------LEAELEELEAELEELESRLEELEEQLETLR-----SKVAQLELQIASL----------NNEIERLEarlERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 292 RRELFTSRKQLVAEQYKHVEMARELGEHNGAEGDLEadyQAASDHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVV 371
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 372 AEAADMQEENEARAEAAELEVDElKSQLADYQQALDVQQTRAIQYTQALQALQRAkelcHLPDLTPDSADEWLDTFQAKE 451
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAIEAALGG----RLQAVVVENLNAAKKAIAFLK 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 452 QEATEKLL------------------SLEQKMSVAQTAHSQFEQAYQLVVAINGPLAR-------NEAWDVARELLRD-- 504
Cdd:TIGR02168 567 QNELGRVTflpldsikgteiqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvvddlDNALELAKKLRPGyr 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 505 -----------------GVNQRH-------------------LAEQVQPLRMRLNELEQRLREQQEAERLL--AEFCKRQ 546
Cdd:TIGR02168 647 ivtldgdlvrpggvitgGSAKTNssilerrreieeleekieeLEEKIAELEKALAELRKELEELEEELEQLrkELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 547 ---GKNYDFDELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERapvWLAAQSSLNQLSEQCGEQFE 623
Cdd:TIGR02168 727 qisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE---IEELEAQIEQLKEELKALRE 803
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 556426079 624 SSQEVTEYLQQLLEREREAIVERDEVGARKRDVDEEIERLSQ 665
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-531 |
7.84e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 7.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALEYRRELFTSRKQLVAEQY 307
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 308 KHVEMARELGEHNGAEGDLEADYQAASDHLNLVQ-TALRQQEKIERYEADLDELQIRLEEQNEVVAEAADmqeenearae 386
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNeEAANLRERLESLERRIAATERRLEDLEEQIEELSE---------- 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 387 aaelEVDELKSQLADYQQALDVQQTRAIQYTQALQALQRAKELchlpdltpdsADEWLDTFQAKEQEATEKLLSLEQKMS 466
Cdd:TIGR02168 853 ----DIESLAAEIEELEELIEELESELEALLNERASLEEALAL----------LRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556426079 467 VAQTAHSQFEQAYQ-LVVAINGPLAR-NEAWDVARELLrdGVNQRHLAEQVQPLRMRLNELEQRLRE 531
Cdd:TIGR02168 919 ELREKLAQLELRLEgLEVRIDNLQERlSEEYSLTLEEA--EALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
230-641 |
9.31e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 230 KAFQDMEAALRENRMTLEA-IRVTQSDRDLFKHLISEATNYV----AADYMRHANERRVHLDQALEYRRELFTSRKQLVA 304
Cdd:COG4717 91 AELQEELEELEEELEELEAeLEELREELEKLEKLLQLLPLYQeleaLEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 305 EQYKHVEMARELGEHNGAE-----GDLEADYQAASDHLNLVQTALRQ-QEKIERYEADLDELQI---------RLEEQNE 369
Cdd:COG4717 171 ELAELQEELEELLEQLSLAteeelQDLAEELEELQQRLAELEEELEEaQEELEELEEELEQLENeleaaaleeRLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 370 VVAEAADMQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYTQALQALQRAKELCHLPDLTPDSADEWLDTFQA 449
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 450 KEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLvvaingpLARNEAWDVARELL-RDGVNQRHLAEQVQPLRMRLNELEQR 528
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEELEEE-------LQLEELEQEIAALLaEAGVEDEEELRAALEQAEEYQELKEE 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 529 LREQQEAERLLAEFCKRQGKNYDFDELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQSRskallERAPVWLAAQ 608
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-----GELAELLQEL 478
|
410 420 430
....*....|....*....|....*....|...
gi 556426079 609 SSLNQLSEQCGEQFESSQEVTEYLQQLLERERE 641
Cdd:COG4717 479 EELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
781-1163 |
2.07e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 781 AARESRIESLHAERETLSERFATLSFDVQKTQRLHQSFSRFIGSHlavafdaDPEAEIRKLNTRRSELERAIASHESDNQ 860
Cdd:COG4717 84 EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL-------PLYQELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 861 QSRVQFEQAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQFEQLK 940
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 941 EDYAWSQQVQREARQQAFALTEVVQRRAHFGYSDSAEMLSG--------NSDLNEKLRQRLEQAEAERTRAREAMRSHSA 1012
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlglLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1013 QLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGVRADSGAEERARIRRDELHSQLSNNRARRN-QLEKALtfceAEMDN 1091
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGvEDEEEL----RAALE 392
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556426079 1092 LTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNNVERRLHRRELAYLSADELRSMSDKALGALRLAVAD 1163
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
894-1115 |
2.12e-04 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 45.95 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 894 RVDEIQERLDEAQEAARFVQQH----GNQLAKLEPVVSVLQSDPeQFEQLKEDYAWSQQVQREARQQAFALTEVVQRRA- 968
Cdd:PRK10246 251 RLDELQQEASRRQQALQQALAAeekaQPQLAALSLAQPARQLRP-HWERIQEQSAALAHTRQQIEEVNTRLQSTMALRAr 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 969 --HFGYSDSAEMLSGNSDLNEKL----RQRLEQAEAERTRAREAMRSHS-AQLNQYNQVLASLKSSFDTKKELLNDLQKE 1041
Cdd:PRK10246 330 irHHAAKQSAELQAQQQSLNTWLaehdRFRQWNNELAGWRAQFSQQTSDrEQLRQWQQQLTHAEQKLNALPAITLTLTAD 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556426079 1042 lqDIGVRADSGAEERA-RIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKA 1115
Cdd:PRK10246 410 --EVAAALAQHAEQRPlRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKT 482
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
862-1115 |
4.08e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 862 SRVQFEQAKEGVAALNRILPRLNLLAD--DTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQFEQL 939
Cdd:PRK02224 194 AQIEEKEEKDLHERLNGLESELAELDEeiERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 940 KEDYAWSQQVQREARQQAfaLTEVVQRRAHFGYSD-SAEMLSgnsDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYN 1018
Cdd:PRK02224 274 REELAEEVRDLRERLEEL--EEERDDLLAEAGLDDaDAEAVE---ARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1019 QVLASLKSSFDTKKELLNDLQKELQDIGVRADSGAEErarirRDELHSQLSNNRARRN----QLEKALTFCE---AEMDN 1091
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREE-----IEELEEEIEELRERFGdapvDLGNAEDFLEelrEERDE 423
|
250 260
....*....|....*....|....
gi 556426079 1092 LTRRLRKLERDYHEMREQVVTAKA 1115
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEA 447
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
433-642 |
4.11e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 433 PDLTPDSADEWLDTF-----QAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLRDgvn 507
Cdd:COG3206 147 PELAAAVANALAEAYleqnlELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE--- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 508 qrhLAEQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNYDFDELEALHQELEARIAALSDTVSNASEQRMALRQEL 587
Cdd:COG3206 224 ---LESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI 300
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 588 EQIQSRSKALLERAPVWL-----AAQSSLNQLSEQCGEQFESSQEVTEYLQQLLEREREA 642
Cdd:COG3206 301 AALRAQLQQEAQRILASLeaeleALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
513-942 |
4.85e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 513 EQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNYDFDELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQS 592
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 593 RSKALLErapvwlaAQSSLNQLSEQCGEQFESS-QEVTEYLQQLLEREREAIVERDEVGARKRDVDEEIERLSQPGGSED 671
Cdd:COG4717 168 LEAELAE-------LQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 672 PRLNALAERFGGVLLSEIYDDVGLDDAPYFSALYGPSRNAIVVPDLSLISEQLAGLEdcpedlyLIEGDPQSFDDSVFSV 751
Cdd:COG4717 241 LEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK-------ASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 752 DELEKAVVVKIADRQWRYSRFPELPLFGRAARESRIESLHAERETLSERFATLSFDVQKTQRLHQsfsrfigshlavaFD 831
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAE-------------AG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 832 ADPEAEIRKLNTRRSELERAiashESDNQQSRVQFEQAKEGVAALNRILPRLNLLAD-DTLADRVDEIQERLDEAQEAAR 910
Cdd:COG4717 381 VEDEEELRAALEQAEEYQEL----KEELEELEEQLEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELA 456
|
410 420 430
....*....|....*....|....*....|..
gi 556426079 911 FVQQHGNQLAKLEPVVSVLQsdpeQFEQLKED 942
Cdd:COG4717 457 ELEAELEQLEEDGELAELLQ----ELEELKAE 484
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
939-1260 |
5.70e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 5.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 939 LKEDYAWSQQVQREARQQAFALTEVVQRRAHFGYS------DSAEMLSGNSDLNEKLR-------QRLEQAEAERTRARE 1005
Cdd:pfam05483 263 LEESRDKANQLEEKTKLQDENLKELIEKKDHLTKEledikmSLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNK 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1006 AMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIGV---RADSGAEERARIRR------DELHSQLSNNRA--- 1073
Cdd:pfam05483 343 AKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMelqKKSSELEEMTKFKNnkevelEELKKILAEDEKlld 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1074 RRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNNVERRLHRRELAYLSAD-ELRSMSDK 1152
Cdd:pfam05483 423 EKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHcDKLLLENK 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1153 AL--GALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLR---ERIRQDIIRTDDPVEAIEQMEIELGRLTEELT 1227
Cdd:pfam05483 503 ELtqEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRdelESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
330 340 350
....*....|....*....|....*....|...
gi 556426079 1228 SREQKLAISSRSVANIIRKTIQREQNRIRQLNQ 1260
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
986-1232 |
5.94e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 986 NEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVlaslkssfdtKKELLNDLQKELQdigVRADSGAEERARIRRDELH 1065
Cdd:pfam17380 391 NERVRQELEAARKVKILEEERQRKIQQQKVEMEQI----------RAEQEEARQREVR---RLEEERAREMERVRLEEQE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1066 SQLSNNRARRNQLEkaltfceaemdnltRRLRKLERDYHEMREQVVTAKAgwcavmRMVkdnnVERRLHRRELAYLSADE 1145
Cdd:pfam17380 458 RQQQVERLRQQEEE--------------RKRKKLELEKEKRDRKRAEEQR------RKI----LEKELEERKQAMIEEER 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1146 LRSMSDKALGALRLAVADNEHLRDvlrmSEDPKRPERKIQffvavyqhLRERIRQDIIRTDDPVEAIEQMEIELGRLTEE 1225
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRRE----AEEERRKQQEME--------ERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
|
....*..
gi 556426079 1226 LTSREQK 1232
Cdd:pfam17380 582 VESEKAR 588
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
350-1136 |
8.22e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 350 IERYEADLDELQIRLEEQNEVvaeaadmqeeNEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYTQALQALQ-RAKE 428
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNEL----------HEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRnQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 429 LCHLPDLTPDSADEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVVAINGPLA----RNEAWDVARELlrd 504
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMStmhfRSLGSAISKIL--- 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 505 gvnqRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKnydfDELEALHQELEARIAALSDTVSNASEQRMALR 584
Cdd:pfam15921 227 ----RELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQ----DRIEQLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 585 QELEQIQSRSKallERAPVWLAAQSSLNQLSEQCGEQFESSQEVteYLQQLLEREREAIVERDEVGARKRDVDEeierLS 664
Cdd:pfam15921 299 SQLEIIQEQAR---NQNSMYMRQLSDLESTVSQLRSELREAKRM--YEDKIEELEKQLVLANSELTEARTERDQ----FS 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 665 QPGGSEDPRLNAlaerfggvLLSEIYddvglddapyfsalygpSRNAivvpDLSLISEQLAGLEDCPE-DLYLIEGDPQS 743
Cdd:pfam15921 370 QESGNLDDQLQK--------LLADLH-----------------KREK----ELSLEKEQNKRLWDRDTgNSITIDHLRRE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 744 FDDSVFSVDELEKAVVVKIADRQWRYSRfpelplfGRAARESRIESLhaeretlsERFATLSFDVQKTQR-LHQSFSRFI 822
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQGQMER-------QMAAIQGKNESL--------EKVSSLTAQLESTKEmLRKVVEELT 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 823 GSHLAVafdADPEAEIRKLNTRRSELERAIASHESD--NQQSRV-----QFEQAKEGVAALNRILPRLNLLA-DDTLADR 894
Cdd:pfam15921 486 AKKMTL---ESSERTVSDLTASLQEKERAIEATNAEitKLRSRVdlklqELQHLKNEGDHLRNVQTECEALKlQMAEKDK 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 895 VDEIQERldEAQEAARFVQQHGN-------QLAKLEPVVSVLQSDPEQFEQLKeDYAWSQQVQREARQQAFALTEVVQRR 967
Cdd:pfam15921 563 VIEILRQ--QIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLELQEFKILK-DKKDAKIRELEARVSDLELEKVKLVN 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 968 AhfgysdSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDI-- 1045
Cdd:pfam15921 640 A------GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrn 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1046 GVRADSGAEERARIRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAK------AGWCA 1119
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAteknkmAGELE 793
|
810
....*....|....*..
gi 556426079 1120 VMRmvkdnNVERRLHRR 1136
Cdd:pfam15921 794 VLR-----SQERRLKEK 805
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
780-1258 |
2.06e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 780 RAARESRIESLHAERETLSERFATLSFDVQKTQrlhQSFSRFIGSHLAVAFDADPEAE-IRKLNTRRSELERAIASHESD 858
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQ---AEEYELLAELARLEQDIARLEErRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 859 NQQSRVQFEQAKEGVAALNRILPRLNLLADDTLADRVDEIQERLDEAQEAARFVQQHGNQLAKLEPVVSVLQSDPEQFEQ 938
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 939 LKEDYAwSQQVQREARQQAFALTEVVQRRAHFGYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREAMRSHSAQLNQYN 1018
Cdd:COG1196 412 LLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1019 QVLASLKS--------SFDTKKELLNDLQKE--------------------------LQDIGVRADSGAEERAR------ 1058
Cdd:COG1196 491 ARLLLLLEaeadyegfLEGVKAALLLAGLRGlagavavligveaayeaaleaalaaaLQNIVVEDDEVAAAAIEylkaak 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1059 ------IRRDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNNVERR 1132
Cdd:COG1196 571 agratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1133 LHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDPVEAI 1212
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 556426079 1213 EQMEIELGRLTEE---LTSREQKLAISSRSVANIIRKTIQREQNRIRQL 1258
Cdd:COG1196 731 EAEREELLEELLEeeeLLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
321-635 |
2.39e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 42.37 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 321 GAEGDLEADYQAASDHLNLVQTALRQ-QEKIERYEADLDELQIRLEEqnevvAEAADMQeenearaeaaeleVDElksql 399
Cdd:COG0497 151 AGLEELLEEYREAYRAWRALKKELEElRADEAERARELDLLRFQLEE-----LEAAALQ-------------PGE----- 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 400 adyQQALDVQQTRAIQYTQALQALQRAKELCHlpdltpdsadewldtfqAKEQEATEKLLSLEQKMSVAQTAHSQFEQAY 479
Cdd:COG0497 208 ---EEELEEERRRLSNAEKLREALQEALEALS-----------------GGEGGALDLLGQALRALERLAEYDPSLAELA 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 480 QLVVAingplARNEAWDVARELlrdgvnqRHLAEQVQPLRMRLNELEQRLREQQEAERllaefcKRQGknyDFDELEALH 559
Cdd:COG0497 268 ERLES-----ALIELEEAASEL-------RRYLDSLEFDPERLEEVEERLALLRRLAR------KYGV---TVEELLAYA 326
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556426079 560 QELEARIAALsdtvSNASEQRMALRQELEQIQsrsKALLERApvwlaaqSSLNQLSEQCGEQFEssQEVTEYLQQL 635
Cdd:COG0497 327 EELRAELAEL----ENSDERLEELEAELAEAE---AELLEAA-------EKLSAARKKAAKKLE--KAVTAELADL 386
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
493-1099 |
2.71e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 493 EAWDVARELLRDGVNQRHLA-------EQVQPLRMRLNELEQRLREQQEAERLLAEFCKRQGKNYDFdELEALHQELEAR 565
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFtklqqefNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQ-LLRTLDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 566 IAALSDTVSNASEQRMALRQELEQIQSRSKALL-ERAPVWLAAQSSLNQLSEQCGEQFESSQEVTEYlQQLLEREREAIv 644
Cdd:pfam12128 303 RDELNGELSAADAAVAKDRSELEALEDQHGAFLdADIETAAADQEQLPSWQSELENLEERLKALTGK-HQDVTAKYNRR- 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 645 eRDEVGARKRDVDEEIERLSQPGGSEDPRLNALAErfggvllseiyDDVGLDDAPYFSALYGPSRNaivvpdlslISEQL 724
Cdd:pfam12128 381 -RSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE-----------DDLQALESELREQLEAGKLE---------FNEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 725 AGLEDCPEDLYLIEGDPQSFDDSVF----SVDELEKAVVVKIADRQWRYSRFPELPLFgRAARESRIESLHAERETLSER 800
Cdd:pfam12128 440 YRLKSRLGELKLRLNQATATPELLLqlenFDERIERAREEQEAANAEVERLQSELRQA-RKRRDQASEALRQASRRLEER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 801 FATLS-----FDVQKTQRLH----------QSFSRFIGSHLAVAFDADPEAEIR-----------KLNTRR--------- 845
Cdd:pfam12128 519 QSALDelelqLFPQAGTLLHflrkeapdweQSIGKVISPELLHRTDLDPEVWDGsvggelnlygvKLDLKRidvpewaas 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 846 -SELERAIASHESDNQQSRVQFEQAKEGVAALNRILPRLNLLADDTLA--DRVDEIQERLDEAQEAARFVQQHGNQLAKL 922
Cdd:pfam12128 599 eEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLRRLFDEKQSEKDKKNKALAERKD 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 923 EPVVSVLQSDPEQFEQLKEDYAWSQQVQREARQQAFALTEvvQRRAHFGYSDSAEMLsgnsdLNEKLRQRLEQAEAERTR 1002
Cdd:pfam12128 679 SANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQA--YWQVVEGALDAQLAL-----LKAAIAARRSGAKAELKA 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1003 AREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDI-----------GVRADSGAEERARIRR------DELH 1065
Cdd:pfam12128 752 LETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVlryfdwyqetwLQRRPRLATQLSNIERaiselqQQLA 831
|
650 660 670
....*....|....*....|....*....|....
gi 556426079 1066 SQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKL 1099
Cdd:pfam12128 832 RLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-661 |
3.06e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 335 DHLNLVQTALRQ-QEKIERYEADLDELQIRLEEQNEVVAEAADMQeenearaeaaeLEVDELKSQLADYQQALDVQQTRA 413
Cdd:PRK02224 206 ERLNGLESELAElDEEIERYEEQREQARETRDEADEVLEEHEERR-----------EELETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 414 IQYTQALQALQRAKEL-----------CHLPDLTPDSADEWLDTFQAKEQEATEkllSLEQKMSVAQTAHSQFEQAYQLV 482
Cdd:PRK02224 275 EELAEEVRDLRERLEEleeerddllaeAGLDDADAEAVEARREELEDRDEELRD---RLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 483 VAINGPL--ARNEAWDV------ARELLRDGVNQRH-LAEQVQPLRMRLNELEQRLREQQEAERLLAEfcKRQGKNYDFD 553
Cdd:PRK02224 352 DDLEERAeeLREEAAELeseleeAREAVEDRREEIEeLEEEIEELRERFGDAPVDLGNAEDFLEELRE--ERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 554 ELEALHQELEARIA---------------------ALSDTVSNASEQRMALRQELEQIQSRSKALLERApvwlaaqSSLN 612
Cdd:PRK02224 430 ELEATLRTARERVEeaealleagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERL-------ERAE 502
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 556426079 613 QLSEQcGEQFESSQEVTEYLQQLLEREREAIVERDEVGARKRDVDEEIE 661
Cdd:PRK02224 503 DLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
507-677 |
3.33e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 507 NQRHLAEQVQPLRMRLNELEQRLREQQEAERLLAEFckrQGKNYDFDELEALHQELEARIAALSDTVSNASEQRMALRQE 586
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL---KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 587 LEQIQSRSKALLERAPVWLAAQSSLNQLSEQCgEQFESSQEVTEYLQQLLEREREAIVER-----DEVGARKRDVDEEIE 661
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKlekelEELEKAKEEIEEEIS 408
|
170
....*....|....*.
gi 556426079 662 RLSQPGGSEDPRLNAL 677
Cdd:PRK03918 409 KITARIGELKKEIKEL 424
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
844-1299 |
3.49e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 844 RRSELERAIASHESdnqQSRVQFEQAKEGVAALNRILPRLnllaDDTLADRVDEIQERLDEAQEAarfVQQHGNQLAKLE 923
Cdd:pfam12128 259 RLSHLHFGYKSDET---LIASRQEERQETSAELNQLLRTL----DDQWKEKRDELNGELSAADAA---VAKDRSELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 924 PvvSVLQSDPEQFEQLKEDYAWSQQVQRE-----ARQQAFA-----LTEVVQRRAHFGYSDSAEMLSGNSDLNEKLRQRL 993
Cdd:pfam12128 329 D--QHGAFLDADIETAAADQEQLPSWQSElenleERLKALTgkhqdVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 994 EQAEAERTRAREAMRS-----HSAQLNQYNQVLASLKSSFDTKKELLND--------LQKELQDIGVRADSGAEERARIR 1060
Cdd:pfam12128 407 DRQLAVAEDDLQALESelreqLEAGKLEFNEEEYRLKSRLGELKLRLNQatatpellLQLENFDERIERAREEQEAANAE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1061 RDELHSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDY----HEMREQVVTAKAGWCAVMRMVKDNNVerrLHRR 1136
Cdd:pfam12128 487 VERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLfpqaGTLLHFLRKEAPDWEQSIGKVISPEL---LHRT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1137 ELaYLSADELRSMSDKALGALRLAVADNEHlrdvlrmsedpkrPErkiqfFVAVYQHLRERIRQDIIRTDDPVEAIEQME 1216
Cdd:pfam12128 564 DL-DPEVWDGSVGGELNLYGVKLDLKRIDV-------------PE-----WAASEEELRERLDKAEEALQSAREKQAAAE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1217 IELGRLTEELTSREQKLAISSRSVANiIRKTIQREQNRIRQLNQGLQSVSFGQVNSVRLNVNVREAHATLLEVLSEQHEQ 1296
Cdd:pfam12128 625 EQLVQANGELEKASREETFARTALKN-ARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLE 703
|
...
gi 556426079 1297 HQD 1299
Cdd:pfam12128 704 EQK 706
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
554-1101 |
3.85e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 554 ELEALHQELEARIAALSDTVSNASEQRMALRQELEQIQSRSKALLERApvwlaaqsslnqlseqcgEQFESSQEVTEYLQ 633
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK------------------EEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 634 QLLEREREAIVERDEvgaRKRDVDEEIERLSQPGGsEDPRLNALAERFggVLLSEIYDDvglddapYFSALYGPSRnaiv 713
Cdd:PRK03918 252 GSKRKLEEKIRELEE---RIEELKKEIEELEEKVK-ELKELKEKAEEY--IKLSEFYEE-------YLDELREIEK---- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 714 vpDLSLISEQLAGLEDCPEDLyliegdpqsfDDSVFSVDELEKavvvKIADRQWRYSRFPElplfgRAARESRIESLHAE 793
Cdd:PRK03918 315 --RLSRLEEEINGIEERIKEL----------EEKEERLEELKK----KLKELEKRLEELEE-----RHELYEEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 794 RETLSERFATLSfdVQKTQRLHQSFSRfigshlavaFDADPEAEIRKLNTRRSELE------------------------ 849
Cdd:PRK03918 374 LERLKKRLTGLT--PEKLEKELEELEK---------AKEEIEEEISKITARIGELKkeikelkkaieelkkakgkcpvcg 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 850 RAIASHESDNQQSRVQFE------QAKEGVAALNRILPRL-----------NLLADDTLADRVDEIQERL-----DEAQE 907
Cdd:PRK03918 443 RELTEEHRKELLEEYTAElkriekELKEIEEKERKLRKELrelekvlkkesELIKLKELAEQLKELEEKLkkynlEELEK 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 908 AARFVQQHGNQLAKLEPVVSVLQSDPEQFEQLKEDYAwsqQVQREARQQAFALTEVVQRRAHFGYSDSAEmlsgnsdLNE 987
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA---ELEKKLDELEEELAELLKELEELGFESVEE-------LEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 988 KLrQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQ---KELQDIGVRADSGAEERARIRRDEL 1064
Cdd:PRK03918 593 RL-KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEelrKELEELEKKYSEEEYEELREEYLEL 671
|
570 580 590
....*....|....*....|....*....|....*..
gi 556426079 1065 HSQLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLER 1101
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
826-1113 |
5.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 826 LAVAFDADPEAEIRKLNTRRSELERAIASHESDNQQSRVQFEQAKEGVAALNRILprlnlladDTLADRVDEIQERLDEA 905
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI--------AALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 906 QEaarfvqqhgnQLAKLEPVVSVLQsdpEQFEQLKEDYA-WSQQVQREARQQAFALTevvqrrahFGYSDSAEMLSGNSD 984
Cdd:COG4942 82 EA----------ELAELEKEIAELR---AELEAQKEELAeLLRALYRLGRQPPLALL--------LSPEDFLDAVRRLQY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 985 LNEKLRQRLEQAEAERtrareamrshsAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIgvradsgaeERARIRRDEL 1064
Cdd:COG4942 141 LKYLAPARREQAEELR-----------ADLAELAALRAELEAERAELEALLAELEEERAAL---------EALKAERQKL 200
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 556426079 1065 HSQLsnnRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTA 1113
Cdd:COG4942 201 LARL---EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
10-51 |
6.66e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.40 E-value: 6.66e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 556426079 10 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:pfam13476 1 LTIENFRSFRDQTIDFSKGLTLITGPNGSGKTTILDAIKLAL 42
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
393-665 |
6.67e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 393 DELKSQLADYQQALDVQQTRAIQYTQ-ALQALQRAKElchlpdlTPDSADEW---LDTFQAKEQEATEKLLSLEQK---- 464
Cdd:PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQsALNWLEERKG-------SLERAKQYqqvIDNFPKLSAELRQQLNNERDEprsv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 465 ---MSVA-------QTAHSQFEQAYQLvvaingplarNEAWDVARElLRDGVNQrhLAEQVQPLRMRLNELEQRLREQQE 534
Cdd:PRK10929 99 ppnMSTDaleqeilQVSSQLLEKSRQA----------QQEQDRARE-ISDSLSQ--LPQQQTEARRQLNEIERRLQTLGT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 535 AERLL--AEFCKRQGKNydfDELEALHQELEarIAALSdtvSNASEQRMALRQELEQIQSrskallERAPVWLAA-QSSL 611
Cdd:PRK10929 166 PNTPLaqAQLTALQAES---AALKALVDELE--LAQLS---ANNRQELARLRSELAKKRS------QQLDAYLQAlRNQL 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556426079 612 N---------------QLSEQCG-------EQFESSQEVTEYLQQLLERereaiveRDEVGARKRDVDEEIERLSQ 665
Cdd:PRK10929 232 NsqrqreaeralesteLLAEQSGdlpksivAQFKINRELSQALNQQAQR-------MDLIASQQRQAASQTLQVRQ 300
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
987-1313 |
7.10e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 987 EKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQVLASLKSSFDTKKELLNDLQKELQDIgvradSGAEERARIRRDELHS 1066
Cdd:COG4372 48 EQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESL-----QEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1067 QLSNNRARRNQLEKALTFCEAEMDNLTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNNVERRLHRRELAYLSADEL 1146
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1147 RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDpVEAIEQMEIELGRLTEEL 1226
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL-ELAILVEKDTEEEELEIA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1227 TSREQKLAISSRSVANIIRKTIQREQNRIRQLNQGLQSVSFGQVNSVRLNVNVREAHATLLEVLSEQHEQHQDLFNSNRL 1306
Cdd:COG4372 282 ALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSK 361
|
....*..
gi 556426079 1307 TFSEALA 1313
Cdd:COG4372 362 GAEAGVA 368
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
835-1263 |
7.24e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 835 EAEIRKLNTRRSELeraiashesDNQQS--RVQFEQAKEGVAALNRilpRLNLLAD--DTLADRVDEIQERLDEAQEAAR 910
Cdd:pfam10174 302 ESELLALQTKLETL---------TNQNSdcKQHIEVLKESLTAKEQ---RAAILQTevDALRLRLEEKESFLNKKTKQLQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 911 FVQ-QHGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQVQREARQQAFALTEVVQrrahfgysdSAEMLSGNSD----- 984
Cdd:pfam10174 370 DLTeEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVK---------SLQTDSSNTDtaltt 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 985 LNEKLRQR---LEQAEAERTRAREAMRSHSAQLNQYNQVL----ASLKSSFDTKKELLNDLQKELQDIgvrADSGAEERA 1057
Cdd:pfam10174 441 LEEALSEKeriIERLKEQREREDRERLEELESLKKENKDLkekvSALQPELTEKESSLIDLKEHASSL---ASSGLKKDS 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1058 RIRRDELHSQLSNNRARR--NQLEKALTFCEAEMDN--LTRRLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNNVERRL 1133
Cdd:pfam10174 518 KLKSLEIAVEQKKEECSKleNQLKKAHNAEEAVRTNpeINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 1134 HRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQhlrerirqdiirTDDPVEAIE 1213
Cdd:pfam10174 598 KDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQ------------LEELMGALE 665
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 556426079 1214 QMEIELGRLTEELTSREQKLAISSRSVANIirktiqrEQNRIRQLNQGLQ 1263
Cdd:pfam10174 666 KTRQELDATKARLSSTQQSLAEKDGHLTNL-------RAERRKQLEEILE 708
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
6-51 |
7.45e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 39.61 E-value: 7.45e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 556426079 6 KFRSLTLINWNGFF-ARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:COG0419 1 KLLRLRLENFRSYRdTETIDFDDGLNLIVGPNGAGKSTILEAIRYAL 47
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
986-1115 |
8.39e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.03 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 986 NEKLRQRLEQAEAERTRAREAMRSHSAQLNQYNQvLASLKSSFDTKKELLNDLQKELQdigvRADSGAEERA--RIRRDE 1063
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELGAEAE-IAAAEAQLAAAQAQLDLAQRELE----RYQALYKKGAvsQQELDE 152
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 556426079 1064 LHSQLSNNRARRNQLEKALTFCEAEMDNLTrRLRKLERDYHEMREQVVTAKA 1115
Cdd:COG1566 153 ARAALDAAQAQLEAAQAQLAQAQAGLREEE-ELAAAQAQVAQAEAALAQAEL 203
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
957-1083 |
8.57e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.10 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556426079 957 AFALTEVVQRRAHFGYSDSAEMLSGNS----------DLNEKLRQRLEQAEAERTRAREAmrshsaqLNQYNQVLASLKS 1026
Cdd:TIGR04320 217 GVSISNDGGVTIHFVNFNDSYIADGNKfdktpipnppNSLAALQAKLATAQADLAAAQTA-------LNTAQAALTSAQT 289
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 556426079 1027 SFDTKKELLNDLQKELQDigvrADSGAEERARIRRDELHSQLSNNRARRNQLEKALT 1083
Cdd:TIGR04320 290 AYAAAQAALATAQKELAN----AQAQALQTAQNNLATAQAALANAEARLAKAKEALA 342
|
|
| |
