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Conserved domains on  [gi|556474506|ref|WP_023326111|]
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MULTISPECIES: hypothetical protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpoE super family cl34313
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ...
 273-347 4.60e-03

DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase


The actual alignment was detected with superfamily member COG1595:

Pssm-ID: 441203 [Multi-domain]  Cd Length: 181  Bit Score: 37.67  E-value: 4.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556474506 273 EELIDRSSEFAFAFDLLKDMPRLWRRIFLLIRVDGLNASSVSEILLIPskEDAVRRWLMQAEAFIAAHLEEAGVS 347
Cdd:COG1595  109 EEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGIS--EGTVKSRLSRARKKLREALEEEGAL 181
Ribosomal_S30AE super family cl46547
Sigma 54 modulation protein / S30EA ribosomal protein; This Pfam family contains the sigma-54 ...
 34-102 8.26e-03

Sigma 54 modulation protein / S30EA ribosomal protein; This Pfam family contains the sigma-54 modulation protein family and the S30AE family of ribosomal proteins which includes the light- repressed protein (lrtA).


The actual alignment was detected with superfamily member COG1544:

Pssm-ID: 480887  Cd Length: 101  Bit Score: 35.53  E-value: 8.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556474506  34 LDKHTKDSARLQIVLDRDKiKRQFLASGYMHLPGKKIVsVTASHDELTPLAQMLAQSLFRQAKKHFDRL 102
Cdd:COG1544   26 LEKYFDRIISADVTLSVEK-NRRFKVEITLHVPGPVLR-AEAEAEDMYAAIDLAVDKLERQLRKYKEKL 92
 
Name Accession Description Interval E-value
RpoE COG1595
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ...
 273-347 4.60e-03

DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441203 [Multi-domain]  Cd Length: 181  Bit Score: 37.67  E-value: 4.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556474506 273 EELIDRSSEFAFAFDLLKDMPRLWRRIFLLIRVDGLNASSVSEILLIPskEDAVRRWLMQAEAFIAAHLEEAGVS 347
Cdd:COG1595  109 EEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGIS--EGTVKSRLSRARKKLREALEEEGAL 181
RaiA COG1544
Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and ...
 34-102 8.26e-03

Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441153  Cd Length: 101  Bit Score: 35.53  E-value: 8.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556474506  34 LDKHTKDSARLQIVLDRDKiKRQFLASGYMHLPGKKIVsVTASHDELTPLAQMLAQSLFRQAKKHFDRL 102
Cdd:COG1544   26 LEKYFDRIISADVTLSVEK-NRRFKVEITLHVPGPVLR-AEAEAEDMYAAIDLAVDKLERQLRKYKEKL 92
 
Name Accession Description Interval E-value
RpoE COG1595
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ...
 273-347 4.60e-03

DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441203 [Multi-domain]  Cd Length: 181  Bit Score: 37.67  E-value: 4.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556474506 273 EELIDRSSEFAFAFDLLKDMPRLWRRIFLLIRVDGLNASSVSEILLIPskEDAVRRWLMQAEAFIAAHLEEAGVS 347
Cdd:COG1595  109 EEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGIS--EGTVKSRLSRARKKLREALEEEGAL 181
RaiA COG1544
Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and ...
 34-102 8.26e-03

Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441153  Cd Length: 101  Bit Score: 35.53  E-value: 8.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556474506  34 LDKHTKDSARLQIVLDRDKiKRQFLASGYMHLPGKKIVsVTASHDELTPLAQMLAQSLFRQAKKHFDRL 102
Cdd:COG1544   26 LEKYFDRIISADVTLSVEK-NRRFKVEITLHVPGPVLR-AEAEAEDMYAAIDLAVDKLERQLRKYKEKL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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