|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-331 |
2.58e-77 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 239.62 E-value: 2.58e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 8 TAAASGRQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLA 87
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 88 NALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmvlpsgdma 167
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPIS----------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 168 egTIPAAFSLLGQ-----VPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGL 242
Cdd:COG1172 152 --GLPDAFRALGQgsllgIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 243 GGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVA 322
Cdd:COG1172 230 AGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLA 309
|
....*....
gi 556480786 323 LAMTYIQKR 331
Cdd:COG1172 310 VLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
57-326 |
1.80e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.56 E-value: 1.80e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 57 IAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATL 136
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 137 ASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSLLGQVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPE 216
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-------SGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 217 AARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGV 296
Cdd:cd06579 154 AARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGV 233
|
250 260 270
....*....|....*....|....*....|
gi 556480786 297 LSNGLVMLSVPYYAMDIIKGLVLAVALAMT 326
Cdd:cd06579 234 LNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
6-322 |
1.96e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 141.39 E-value: 1.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 6 SVTAAASGRQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTAS 85
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 86 LANALVISLfVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITENMvlpsGD 165
Cdd:PRK09512 81 LTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGF----TD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 166 MAEgtipaAFSLLGQ-----VPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA 240
Cdd:PRK09512 156 NAD-----LFGWFGIgrplgIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 241 GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIG-FSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVL 319
Cdd:PRK09512 231 ALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGgTSLAG-GKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVI 309
|
...
gi 556480786 320 AVA 322
Cdd:PRK09512 310 LLA 312
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-331 |
3.03e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 109.86 E-value: 3.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 23 KWGMLLTVVALVAVFGLASDN-FLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFG 101
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 102 TTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmVLPSG--DMAEGTIPAAFS--- 176
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIG---PFPDGfqKISSGFLPDLFGgtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 177 ------LLGQV-----------------------------------------------------PTIVIIMLVVTVLAQL 197
Cdd:NF040906 161 lhlltlLLGVLaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 198 GLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLA 277
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 556480786 278 GSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAMTYIQKR 331
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
49-323 |
5.57e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 73.83 E-value: 5.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 49 NIINILRAIAIVTVIAIGVSISL-TVGGFDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVIL 127
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 128 RIPDMLATLASLFVIQGVAMTYsYGGSITENMVLPSGDMAEGTIPAAFSLLGQVptIVIIMLVVTVLAQLGLSLTTHGRR 207
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFL-VTGILGGEGGTSGITGPSGFPGAFLSFAFAF--IFLLALLLVLALWLLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 208 MYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQV-NAGGGYLMDAVAAAWIGfslagsGKPNALG 286
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLG------GAGSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 556480786 287 TLVGAVILGVLSN-GLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-331 |
2.58e-77 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 239.62 E-value: 2.58e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 8 TAAASGRQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLA 87
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 88 NALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmvlpsgdma 167
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPIS----------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 168 egTIPAAFSLLGQ-----VPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGL 242
Cdd:COG1172 152 --GLPDAFRALGQgsllgIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 243 GGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVA 322
Cdd:COG1172 230 AGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLA 309
|
....*....
gi 556480786 323 LAMTYIQKR 331
Cdd:COG1172 310 VLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
57-326 |
1.80e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.56 E-value: 1.80e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 57 IAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATL 136
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 137 ASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSLLGQVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPE 216
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-------SGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 217 AARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGV 296
Cdd:cd06579 154 AARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGV 233
|
250 260 270
....*....|....*....|....*....|
gi 556480786 297 LSNGLVMLSVPYYAMDIIKGLVLAVALAMT 326
Cdd:cd06579 234 LNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
1-322 |
2.00e-50 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 172.22 E-value: 2.00e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 1 MSKALSVTAAASG-RQHIFDFLYKWGMLLTVVALVAVFGLASD-NFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDL 78
Cdd:COG4214 1 MSTTAAPGGAVRSlRRLLGGDLRSLGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 79 SVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITen 158
Cdd:COG4214 81 SVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIA-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 159 mVLPSG--DMAEGTIPAAFSLLG--------------------------------------------------------- 179
Cdd:COG4214 159 -PFDPTfqAIGNGFLPDILGTLSwvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyr 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 180 QVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAG 259
Cdd:COG4214 238 GIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAG 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556480786 260 GGYLMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVA 322
Cdd:COG4214 318 TGFELDAIAAAVIgGTSLFG-GVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLA 380
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
14-331 |
5.04e-42 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 148.50 E-value: 5.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 14 RQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVIS 93
Cdd:COG4211 6 KKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISAS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 94 LF--------VWHGFGTTE---SILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTY-------SYGGSI 155
Cdd:COG4211 86 LLqsgdyagkFFPNLPELPiivPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYtdrpgaqPIGGLD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 156 TENMVLPSGDMAEGTIPaafsllgqVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVI 235
Cdd:COG4211 166 ESFTNFAQGSINIGGFG--------IPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYAL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 236 ASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDII 314
Cdd:COG4211 238 AGALYGFAGFLEAARTGSATNNYGNGYELDAIAACVVgGVSFSG-GIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYII 316
|
330 340
....*....|....*....|
gi 556480786 315 KGLVLAVALAM---TYIQKR 331
Cdd:COG4211 317 KGLIIIAAVALdirKYLKKK 336
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
6-322 |
1.96e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 141.39 E-value: 1.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 6 SVTAAASGRQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTAS 85
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 86 LANALVISLfVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITENMvlpsGD 165
Cdd:PRK09512 81 LTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGF----TD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 166 MAEgtipaAFSLLGQ-----VPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA 240
Cdd:PRK09512 156 NAD-----LFGWFGIgrplgIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 241 GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIG-FSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVL 319
Cdd:PRK09512 231 ALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGgTSLAG-GKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVI 309
|
...
gi 556480786 320 AVA 322
Cdd:PRK09512 310 LLA 312
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
17-331 |
2.04e-31 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 120.56 E-value: 2.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 17 IFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLF- 95
Cdd:PRK09478 9 FLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLq 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 96 -------VWHGFGTTE---SILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTY--SYGGSitenmvlPS 163
Cdd:PRK09478 89 smdnankVFPELATMPialVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYydFVGAS-------PI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 164 GDMAEG--TIPAAFSLLG--QVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLL 239
Cdd:PRK09478 162 SGFDSGfsTFAQGFVALGsfRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 240 AGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKG--L 317
Cdd:PRK09478 242 YAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGaiI 321
|
330
....*....|....*
gi 556480786 318 VLAVAL-AMTYIQKR 331
Cdd:PRK09478 322 IFAVALdSLKYARKK 336
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
6-322 |
7.16e-30 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 116.32 E-value: 7.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 6 SVTAAASGRQHIFDFLYKWGMLLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGST-- 83
Cdd:PRK11285 12 AAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVva 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 84 -ASLANALVISLfvwhgfgtTESILI----TLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSIten 158
Cdd:PRK11285 92 fAGVVTAVVINA--------TESLWLgvaaGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV--- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 159 mvlpsGDMAEGTIPAAFSLLGQVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASL 238
Cdd:PRK11285 161 -----GISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 239 LAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGL 317
Cdd:PRK11285 236 VSALAGVILASRMTSGQPMTSIGFELIVISACVLgGVSLKG-GIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGL 314
|
....*
gi 556480786 318 VLAVA 322
Cdd:PRK11285 315 ILLAA 319
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
19-325 |
7.14e-28 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 110.25 E-value: 7.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 19 DFLYKWGMLLTVVALVAVFG-LASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVW 97
Cdd:PRK09699 7 LFWDKYGTFFILAIIVAIFGsLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 98 HGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSL 177
Cdd:PRK09699 87 GVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV-------YGFSFDFVNFFAASV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 178 LGqVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVN 257
Cdd:PRK09699 160 IG-IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPL 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556480786 258 AGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAM 325
Cdd:PRK09699 239 AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVAL 306
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-331 |
3.03e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 109.86 E-value: 3.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 23 KWGMLLTVVALVAVFGLASDN-FLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFG 101
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 102 TTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmVLPSG--DMAEGTIPAAFS--- 176
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIG---PFPDGfqKISSGFLPDLFGgtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 177 ------LLGQV-----------------------------------------------------PTIVIIMLVVTVLAQL 197
Cdd:NF040906 161 lhlltlLLGVLaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 198 GLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLA 277
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 556480786 278 GSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAMTYIQKR 331
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-323 |
8.97e-26 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 105.20 E-value: 8.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 27 LLTVVALVAVFGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLAnALVISLFVWHGFGTTESI 106
Cdd:PRK15432 14 LLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLC-AVLVGMLLNAGYSLPVAC 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 107 LITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVaMTYSYGGSITENmvLPSgDMAEGTIPAAFSllgqVPTIVI 186
Cdd:PRK15432 93 LATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGI-MLLWTGGKWIEG--LPA-ELKQLSAPILLG----ISPIGW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 187 IMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDA 266
Cdd:PRK15432 165 LTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKA 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 556480786 267 VAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:PRK15432 245 IAACVLgGISLLG-GSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVL 301
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
26-297 |
2.04e-20 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 90.01 E-value: 2.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 26 MLLTVVALVAVFGLAS---DNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFGT 102
Cdd:PRK11618 8 LMITIGVFVLGYLFCLvqfPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 103 TESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGgSITENMVLPSgDMAEGTIPAAFSllGQVP 182
Cdd:PRK11618 88 LLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEE-SIPINHPFYD-TLSSLAWKLPGG--GRLS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 183 TIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGY 262
Cdd:PRK11618 164 AMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGV 243
|
250 260 270
....*....|....*....|....*....|....*
gi 556480786 263 LMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVL 297
Cdd:PRK11618 244 ELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
22-323 |
3.56e-17 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 81.03 E-value: 3.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 22 YKWGMLLTVVALVAV--FGLASDNFLDPNNIINILRAIAIVTVIAIGVSISLTVGGFDLSVGSTASLAnALVISLFVWHG 99
Cdd:PRK15038 5 YGWELALAALLVIEIlaFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQSG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 100 FGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSyggsiteNMVLPSGDMAEGTIPAAF---- 175
Cdd:PRK15038 84 VPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLS-------GMAGATGYEGIGGFPMAFtdfa 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 176 --SLLGqVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGS 253
Cdd:PRK15038 157 nlDVLG-LPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGS 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 254 SQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:PRK15038 236 ARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
63-323 |
1.02e-16 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 78.47 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 63 IAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVI 142
Cdd:cd06574 7 LALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 143 QGVAMTYSYGGSITenmVLPSGDMAEGTIPAAFSLLGQVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSG 222
Cdd:cd06574 87 YSINLRIMGGPNIP---LGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 223 IRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNA--LGTLVGAVILGVLSNG 300
Cdd:cd06574 164 INVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKAsiLGVIIGAILYRIALAL 243
|
250 260
....*....|....*....|...
gi 556480786 301 LVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:cd06574 244 ALGSGLIPSDLKLITAGVIVLVL 266
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
49-323 |
5.57e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 73.83 E-value: 5.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 49 NIINILRAIAIVTVIAIGVSISL-TVGGFDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFNAFLIVIL 127
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 128 RIPDMLATLASLFVIQGVAMTYsYGGSITENMVLPSGDMAEGTIPAAFSLLGQVptIVIIMLVVTVLAQLGLSLTTHGRR 207
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFL-VTGILGGEGGTSGITGPSGFPGAFLSFAFAF--IFLLALLLVLALWLLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 208 MYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQV-NAGGGYLMDAVAAAWIGfslagsGKPNALG 286
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLG------GAGSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 556480786 287 TLVGAVILGVLSN-GLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
58-321 |
1.28e-06 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 48.97 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 58 AIVTVIAIGVSISLTVGG-FDLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVG-LFNAFLIVILR---IPDM 132
Cdd:cd06582 6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRgapLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 133 LATLASLFVIQGVAMTYSYGGSITENMVLPSGDMAEGTIpaafSLLGQVPTIVIIMLVVTVLAQLGLSLTTHGRRMYAIG 212
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGV----TIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 213 GNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSqVNAGGGYLMDAVAAAWIGfslaGSGkpNALGTLVGAV 292
Cdd:cd06582 162 QNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVS-PTMGLLLLLKAFAAVVLG----GLG--SIPGAVVGGL 234
|
250 260
....*....|....*....|....*....
gi 556480786 293 ILGVLSNGLVMLSVPYYAMDIIKGLVLAV 321
Cdd:cd06582 235 LLGLAESLAAAYLSSGYKDAVAFVLLILV 263
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
185-328 |
2.02e-06 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 48.96 E-value: 2.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 185 VIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA-GLGGILLASRIGSSQVNAGGGYL 263
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAgLAGAVEVLGVQGRLTPGFSPGYG 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556480786 264 MDAVAAAWIGFSlagsgkpNALGTLVGAVILGVLSNG----LVMLSVPYYAMDIIKGLVLAVALAMTYI 328
Cdd:COG4603 280 FTGIAVALLGRN-------NPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVLAADFL 341
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
48-321 |
8.76e-06 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 46.59 E-value: 8.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 48 NNIINILRAIAIVTVIAIGVSISLTVGGF-DLSVGSTASLANALVISLFVWHGFGTTESILITLALCTLVGLFnAFLIVI 126
Cdd:COG0559 6 QQLLNGLSLGSIYALIALGLTLIFGVMGViNFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVL-LERLVI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 127 LRIPD------MLATLASLFVIQGVAMTYsYGgsiTENMVLPSGdmaegtIPAAFSLLG-QVPTIVIIMLVVTVLAQLGL 199
Cdd:COG0559 85 RPLRGapplalLLATIGLSLVLQGLVLLI-FG---ADPRSFPAL------LSGSVELGGvSIPAYRLFIIVVALVLLAAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 200 SL----TTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASrIGSSQVNAGGGYLMDAVAAAWIGfs 275
Cdd:COG0559 155 WLflrrTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAP-IYSVSPTMGFLLGLKAFAAVVLG-- 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 556480786 276 laGSGkpNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAV 321
Cdd:COG0559 232 --GLG--SIPGAVVGGLLLGLAESLGAAYLPSGYKDVVAFVLLILV 273
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
184-323 |
5.09e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.97 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 184 IVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLG-GILLASRIGSSQVNAGGGY 262
Cdd:cd06580 97 LLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAgAYLVLGVQGRFTEGMSAGY 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556480786 263 LMDAVAAAWIGFSlagsgkpNALGTLVGAVILGVLSNGL----VMLSVPYYAMDIIKGLVLAVAL 323
Cdd:cd06580 177 GFIAIAVALLGRW-------NPLGILLAALLFGALEAGGialqRSGGVPSELVQVLPGIIVLFVL 234
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
184-237 |
3.80e-04 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 41.61 E-value: 3.80e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 556480786 184 IVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIAS 237
Cdd:COG4177 137 LVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSA 190
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
94-237 |
9.18e-04 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 40.12 E-value: 9.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556480786 94 LFVWHGFGTTESILITLALCTLVGLFNAFLIVILR-IPDMLATLASLFVIQGVAMTYSY--GGSI-TENMVLPSGDMAEG 169
Cdd:cd06581 39 LATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRgVYFAIATLAFAEIVRLLALNWSSltGGSNgLSGIPPPLLGGLLL 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556480786 170 TIPAAFSLLgqvptiVIIMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIAS 237
Cdd:cd06581 119 SSPLAFYYL------VLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSA 180
|
|
| |
