NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|558692715|ref|WP_023522132|]
View 

MULTISPECIES: YhcN/YlaJ family sporulation lipoprotein [Bacillus cereus group]

Protein Classification

YhcN/YlaJ family sporulation lipoprotein( domain architecture ID 11495572)

YhcN/YlaJ family sporulation lipoprotein similar to Bacillus subtilis proteins YlaJ and YhcN that contribute to the efficiency of spore germination

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 4-154 1.29e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


:

Pssm-ID: 131944  Cd Length: 158  Bit Score: 171.01  E-value: 1.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715    4 LIYILMLCFVITGCSIGTKEN-PNEKPEQKNVSMKNVNYTNKSNKPNE----KAADHLASLAASVPGVNDATAVVVGKYA 78
Cdd:TIGR02898   2 LFIILLLLLVLTGCTNAQKKNpPNNNVGETNVMSKNNNGMNTTNDTNDgdlyDVADEIASEAAKVKGVKDATVVITGNYA 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558692715   79 IVGIDVKAKLDRTRVESIKYSVAESLKN-DPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGILDELAAIVGRVMP 154
Cdd:TIGR02898  82 YVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVRRVFP 158
 
Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 4-154 1.29e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 171.01  E-value: 1.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715    4 LIYILMLCFVITGCSIGTKEN-PNEKPEQKNVSMKNVNYTNKSNKPNE----KAADHLASLAASVPGVNDATAVVVGKYA 78
Cdd:TIGR02898   2 LFIILLLLLVLTGCTNAQKKNpPNNNVGETNVMSKNNNGMNTTNDTNDgdlyDVADEIASEAAKVKGVKDATVVITGNYA 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558692715   79 IVGIDVKAKLDRTRVESIKYSVAESLKN-DPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGILDELAAIVGRVMP 154
Cdd:TIGR02898  82 YVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVRRVFP 158
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 4-156 1.82e-42

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 140.92  E-value: 1.82e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715   4 LIYILMLCFVITGCSIGTK-----ENPNEKPEQKNVSMKN------VNYTNKSN----------KPNEKAADHLASLAAS 62
Cdd:COG5912    7 LAIALLAALALAGCGTNNKpapntETNNVEPNNRPTRVKNtanngdANTNNHLNgnrdrtgdynNENQELADRIANRAAR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715  63 VPGVNDATAVVVGKYAIVGIDVKAKLDRTRVESIKYSVAESLK-NDPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGI 141
Cdd:COG5912   87 VPGVKDATVVVTGNNAYVGIDLKGNLDGKRTDTIKYKVAEAVKsADPRIKNVYVSADPDFVDRIRNIANDIRNGRPVSGF 166

                        170
                 ....*....|....*
gi 558692715 142 LDELAAIVGRVMPQV 156
Cdd:COG5912  167 FDELAEIVRRIFPEA 181
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 21-152 1.43e-15

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 70.42  E-value: 1.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715   21 TKENPNEKPEQKNVSMKNVNYTNKSNKPNEKAADHLASLAASVPGVNDATAVVVGKYAIVGIDVKAKLDRTrvESIKYSV 100
Cdd:pfam09580  26 TDDNGYVRYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTALVAVDTDNNGSDR--DELKDQV 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 558692715  101 AESLKN-DPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGILDELAAIVGRV 152
Cdd:pfam09580 104 KKAVKSvDPRIYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMIERM 156
 
Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 4-154 1.29e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 171.01  E-value: 1.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715    4 LIYILMLCFVITGCSIGTKEN-PNEKPEQKNVSMKNVNYTNKSNKPNE----KAADHLASLAASVPGVNDATAVVVGKYA 78
Cdd:TIGR02898   2 LFIILLLLLVLTGCTNAQKKNpPNNNVGETNVMSKNNNGMNTTNDTNDgdlyDVADEIASEAAKVKGVKDATVVITGNYA 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558692715   79 IVGIDVKAKLDRTRVESIKYSVAESLKN-DPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGILDELAAIVGRVMP 154
Cdd:TIGR02898  82 YVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVRRVFP 158
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 4-156 1.82e-42

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 140.92  E-value: 1.82e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715   4 LIYILMLCFVITGCSIGTK-----ENPNEKPEQKNVSMKN------VNYTNKSN----------KPNEKAADHLASLAAS 62
Cdd:COG5912    7 LAIALLAALALAGCGTNNKpapntETNNVEPNNRPTRVKNtanngdANTNNHLNgnrdrtgdynNENQELADRIANRAAR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715  63 VPGVNDATAVVVGKYAIVGIDVKAKLDRTRVESIKYSVAESLK-NDPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGI 141
Cdd:COG5912   87 VPGVKDATVVVTGNNAYVGIDLKGNLDGKRTDTIKYKVAEAVKsADPRIKNVYVSADPDFVDRIRNIANDIRNGRPVSGF 166

                        170
                 ....*....|....*
gi 558692715 142 LDELAAIVGRVMPQV 156
Cdd:COG5912  167 FDELAEIVRRIFPEA 181
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 21-152 1.43e-15

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 70.42  E-value: 1.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558692715   21 TKENPNEKPEQKNVSMKNVNYTNKSNKPNEKAADHLASLAASVPGVNDATAVVVGKYAIVGIDVKAKLDRTrvESIKYSV 100
Cdd:pfam09580  26 TDDNGYVRYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTALVAVDTDNNGSDR--DELKDQV 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 558692715  101 AESLKN-DPDGANAVVVADVDTYERLKQIGRQIKKGKTGEGILDELAAIVGRV 152
Cdd:pfam09580 104 KKAVKSvDPRIYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMIERM 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH