|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
3-218 |
3.93e-100 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 293.12 E-value: 3.93e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----SKMKSEIGYLPQ 78
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVardpAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 159 ALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:COG1131 161 GLDPEARRELWELLRELAAEgKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKAR 221
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-298 |
1.36e-88 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 266.20 E-value: 1.36e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-KMKSEIGYLPQ--- 78
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDpEDRRRIGYLPEerg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 -YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:COG4152 82 lYPK----MKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 158 SALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRENKLIIEITAkDQNWI 236
Cdd:COG4152 158 SGLDPVNVELLKDVIRELAaKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTLRLEADG-DAGWL 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 237 evvKKLPYVKNVEVVGLKIKVKVESiEINKNMLLQNALEhKVDIVKFKMSNDTLEEIFLKLV 298
Cdd:COG4152 237 ---RALPGVTVVEEDGDGAELKLED-GADAQELLRALLA-RGPVREFEEVRPSLNEIFIEVV 293
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
3-204 |
4.47e-75 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 227.28 E-value: 4.47e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYLPQ 78
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKepeeVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLtfmgqlsglkkeelsksipkmlekvglkeeenakvsTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03230 81 EPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 558693083 159 ALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03230 125 GLDPESRREFWELLRELKKEgKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
3-204 |
6.67e-75 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 228.23 E-value: 6.67e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGeCVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----IGYLPQ 78
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKlrrrIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 159 ALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
3-205 |
2.82e-68 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 211.59 E-value: 2.82e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----SKMKSEIGYL 76
Cdd:cd03263 1 LQIRNLTKTYKKgtKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIrtdrKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
3-224 |
5.98e-68 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 211.64 E-value: 5.98e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM----KSEIGYLPQ 78
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEpreaRRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 159 ALDPIGRREVLNLIKEIKK-DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRENKL 224
Cdd:COG4555 162 GLDVMARRLLREILRALKKeGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEENL 228
|
|
| GldA_ABC_ATP |
TIGR03522 |
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein ... |
1-294 |
1.19e-64 |
|
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Pssm-ID: 132561 [Multi-domain] Cd Length: 301 Bit Score: 205.39 E-value: 1.19e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----IGYL 76
Cdd:TIGR03522 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEvqrnIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRENKLIIEIT-AKDQNW 235
Cdd:TIGR03522 161 TTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEeQIDLQL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 236 IEVVKKLPYVKNveVVGLKIKVKVESIEINKNMLLQNALEHKVDIVKFKMSNDTLEEIF 294
Cdd:TIGR03522 241 FETLEEISSVKN--TGGNTWKLTFETPNDTRPEIFKLAQQKGLKLISLQQNEKNLEQVF 297
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
3-209 |
2.58e-63 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 198.60 E-value: 2.58e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS---EIGYLPQY 79
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEalrRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFMGQLSGLKKEElsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:cd03268 81 PGFYPNLTARENLRLLARLLGIRKKR----IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 160 LDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIED 209
Cdd:cd03268 157 LDPDGIKELRELILSLRDQgITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-218 |
5.89e-62 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 204.37 E-value: 5.89e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-----KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS------ 71
Cdd:COG1123 261 LEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRrslrel 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 --EIGYLPQYPN--FFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEE-ENAKVSTFSGGMKQRLGIAQALL 145
Cdd:COG1123 341 rrRVQMVFQDPYssLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPPDlADRYPHELSGGQRQRVAIARALA 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:COG1123 421 LEPKLLILDEPTSALDVSVQAQILNLLRDLQRELglTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFAN 495
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
3-215 |
9.14e-62 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 194.90 E-value: 9.14e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYLPQ 78
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRepreVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 159 ALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLKEefGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
10-297 |
3.22e-61 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 196.46 E-value: 3.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 10 KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----SKMKSEIGYLPQYPNFFHW 85
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVvrepRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGR 165
Cdd:TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 166 REVLNLIKEIKK-DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRENKLIIEITAKDQ-------NWIE 237
Cdd:TIGR01188 161 RAIWDYIRALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSlkvevsmLIAE 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 238 VVKKLPYVKNVEVVGLKIKVKVESIEINKNMLLQNALEHKVDIVKFKMSNDTLEEIFLKL 297
Cdd:TIGR01188 241 LGETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRNGIRIRSISTERPSLDDVFLKL 300
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
3-207 |
5.81e-59 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 187.49 E-value: 5.81e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-KMKSEIGYLPQ--- 78
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDiAARNRIGYLPEerg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 -YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:cd03269 81 lYPK----MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 158 SALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:cd03269 157 SGLDPVNVELLKDVIRELArAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
3-204 |
3.92e-56 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 180.41 E-value: 3.92e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLPQY 79
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVppeRRNIGMVFQD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 558693083 160 LDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03259 161 LDAKLREELREELKELQRelGITTIYVTHDQEEALALADRIAVMNEG 207
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-252 |
4.88e-56 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 184.26 E-value: 4.88e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYL 76
Cdd:PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPArarlARARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 157 VSALDPIGRrevlNLIKE-----IKKDTTILLSTHILSDAEEICERFVIIKDGTKIE----DTTITELLHRNrenklIIE 227
Cdd:PRK13536 200 TTGLDPHAR----HLIWErlrslLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAegrpHALIDEHIGCQ-----VIE 270
|
250 260
....*....|....*....|....*
gi 558693083 228 ITAKDQNWIEVVKKlPYVKNVEVVG 252
Cdd:PRK13536 271 IYGGDPHELSSLVK-PYARRIEVSG 294
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
3-218 |
3.36e-55 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 178.68 E-value: 3.36e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-----SEIGYL 76
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNlrelrRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPN--FFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:COG1122 81 FQNPDdqLFA-PTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:COG1122 160 EPTAGLDPRGRRELLELLKRLNKEgKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSD 224
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-204 |
4.56e-55 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 178.74 E-value: 4.56e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQYPNf 82
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRIGYVPQRAE- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHW---MTARETLTF-----MGQLSGLKKEELSKsIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:COG1121 86 VDWdfpITVRDVVLMgrygrRGLFRRPSRADREA-VDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKK-DTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:COG1121 165 EPFAGVDAATEEALYELLRELRReGKTILVVTHDLGAVREYFDRVLLLNRG 215
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-193 |
1.95e-54 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 177.59 E-value: 1.95e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSF----KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYL 76
Cdd:COG1116 6 PALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDRGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG1116 86 FQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEP 165
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 558693083 157 VSALDPIGRR----EVLNLIKEIKKdtTILLSTHilsDAEE 193
Cdd:COG1116 166 FGALDALTRErlqdELLRLWQETGK--TVLFVTH---DVDE 201
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
3-209 |
9.16e-54 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 174.62 E-value: 9.16e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI----AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-------- 70
Cdd:cd03257 2 LEVKNLSVSFPTGGgsvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlrkirr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYP----NFfhWMTARETL--TFMGQLSGLKKEELSKSIPKMLEKVGLKEE-ENAKVSTFSGGMKQRLGIAQA 143
Cdd:cd03257 82 KEIQMVFQDPmsslNP--RMTIGEQIaePLRIHGKLSKKEARKEAVLLLLVGVGLPEEvLNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIED 209
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEelGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
3-215 |
1.67e-53 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 174.86 E-value: 1.67e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK--------SEI 73
Cdd:COG3638 3 LELRNLSKRYPgGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgralrrlrRRI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARET-LT-FMGQLSGLK-------KEELSKSIpKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQAL 144
Cdd:COG3638 83 GMIFQQFNLVPRLSVLTNvLAgRLGRTSTWRsllglfpPEDRERAL-EALERVGLADKAYQRADQLSGGQQQRVAIARAL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:COG3638 162 VQEPKLILADEPVASLDPKTARQVMDLLRRIarEDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL 234
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
3-201 |
4.62e-53 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 172.66 E-value: 4.62e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQ 78
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 558693083 159 ALDPIGR----REVLNLIKEIKKdtTILLSTHILSDAEEICERFVII 201
Cdd:cd03293 161 ALDALTReqlqEELLDIWRETGK--TVLLVTHDIDEAVFLADRVVVL 205
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-210 |
1.48e-52 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 171.76 E-value: 1.48e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKI---AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS------- 71
Cdd:COG1136 5 LELRNLTKSYGtGEGevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSErelarlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 --EIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:COG1136 85 rrHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHilsDAE--EICERFVIIKDGTKIEDT 210
Cdd:COG1136 165 LILADEPTGNLDSKTGEEVLELLRELNRElgTTIVMVTH---DPElaARADRVIRLRDGRIVSDE 226
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-205 |
2.52e-52 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 170.34 E-value: 2.52e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGYL 76
Cdd:cd03225 1 ELKNLSFSYPDgaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLkelrrKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPN--FFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03225 81 FQNPDdqFFG-PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03225 160 EPTAGLDPAGRRELLELLKKLKAEgKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
3-204 |
4.56e-52 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 169.98 E-value: 4.56e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI----AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS------- 71
Cdd:cd03255 1 IELKNLSKTYGGGGekvqALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEkelaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 --EIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:cd03255 81 rrHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAeEICERFVIIKDG 204
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEagTTIVVVTHDPELA-EYADRIIELRDG 216
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
3-217 |
5.98e-52 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 170.38 E-value: 5.98e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE--------IG 74
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAelyrlrrrMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFpLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLH 217
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
3-204 |
7.58e-52 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 170.44 E-value: 7.58e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK--------SEI 73
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKgkalrqlrRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARETL---------TFMGQLSGLKKEELSKSIpKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQAL 144
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVlsgrlgrrsTWRSLFGLFPKEEKQRAL-AALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRInrEEGITVIVSLHQVDLAREYADRIVGLKDG 221
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
3-216 |
7.75e-52 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 170.61 E-value: 7.75e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGYLP 77
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRrelarRIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNF-FHwMTARET-----LTFMGQLSGLKKEELSKsIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:COG1120 82 QEPPApFG-LTVRELvalgrYPHLGLFGRPSAEDREA-VEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:COG1120 160 LLDEPTSHLDLAHQLEVLELLRRLARErgRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-221 |
6.80e-51 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 175.09 E-value: 6.80e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTA---GEVLLNGIKISKMK-----SE 72
Cdd:COG1123 5 LEVRDLSVRYPGgdVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSealrgRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:COG1123 85 IGMVFQDPmTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRE 221
Cdd:COG1123 165 IADEPTTALDVTTQAEILDLLRELQRErgTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQA 236
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
3-205 |
6.91e-51 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 165.82 E-value: 6.91e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-------IGY 75
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDElpplrrrIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTFmgqlsglkkeelsksipkmlekvGLkeeenakvstfSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL-----------------------GL-----------SGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAQlgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
3-216 |
1.20e-50 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 169.22 E-value: 1.20e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS----KMKSEIGYLPQ 78
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPsrarHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 159 ALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK13537 168 GLDPQARHLMWERLRSLlARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
3-204 |
1.21e-50 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 166.39 E-value: 1.21e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIG 74
Cdd:cd03266 2 ITADALTKRFRDVkktvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKepaeARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALgKCILFSTHIMQEVERLCDRVVVLHRG 212
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-192 |
1.57e-50 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 165.73 E-value: 1.57e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYL 76
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDaredYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELskSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADRE--AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEP 158
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 157 VSALDPIGRREVLNLIKE-IKKDTTILLSTHILSDAE 192
Cdd:COG4133 159 FTALDAAGVALLAELIAAhLARGGAVLLTTHQPLELA 195
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
3-204 |
1.63e-50 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 166.42 E-value: 1.63e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-KMKSEIGYLPQYPN 81
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTrKDLHKIGSLIESPP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 82 FFHWMTARETLTFMGQLSGLKKEElsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:TIGR03740 81 LYENLTARENLKVHTTLLGLPDSR----IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 162 PIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:TIGR03740 157 PIGIQELRELIRSFPEQgITVILSSHILSEVQQLADHIGIISEG 200
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-202 |
6.67e-50 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 164.24 E-value: 6.67e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQYPNfF 83
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS-I 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 HW---MTARET-----LTFMGQLSGLKKEELSKsIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03235 80 DRdfpISVRDVvlmglYGHKGLFRRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIK 202
Cdd:cd03235 159 PFAGVDPKTQEDIYELLRELRREgMTILVVTHDLGLVLEYFDRVLLLN 206
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-216 |
1.45e-49 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 164.59 E-value: 1.45e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF----KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EI 73
Cdd:COG1124 2 LEVRNLSVSYgqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRkafrrRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYP----NFFHwmTARETLTFMGQLSGLKKEElsKSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:COG1124 82 QMVFQDPyaslHPRH--TVDRILAEPLRIHGLPDRE--ERIAELLEQVGLPPSFlDRYPHQLSGGQRQRVAIARALILEP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:COG1124 158 ELLLLDEPTSALDVSVQAEILNLLKDLREErgLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLL 227
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
3-217 |
3.93e-48 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 160.53 E-value: 3.93e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE--------IG 74
Cdd:COG1127 6 IEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelyelrrrIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:COG1127 86 MLFQGGALFDSLTVFENVAFpLREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLY 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLH 217
Cdd:COG1127 166 DEPTAGLDPITSAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-218 |
4.46e-48 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 162.92 E-value: 4.46e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF---KGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP---TAGEVLLNGIKISKMK----- 70
Cdd:COG0444 2 LEVRNLKVYFptrRGVVkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSekelr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 ----SEIGYLPQYPnffhwMTA-----------RETLTFMGqlsGLKKEELSKSIPKMLEKVGLKEEENAKVS---TFSG 132
Cdd:COG0444 82 kirgREIQMIFQDP-----MTSlnpvmtvgdqiAEPLRIHG---GLSKAEARERAIELLERVGLPDPERRLDRyphELSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 133 GMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDT 210
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRelGLAILFITHDLGVVAEIADRVAVMYAGRIVEEG 233
|
....*...
gi 558693083 211 TITELLHR 218
Cdd:COG0444 234 PVEELFEN 241
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
3-216 |
4.83e-47 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 157.74 E-value: 4.83e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-------- 70
Cdd:cd03258 2 IELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkelrkar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDINRELglTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
3-209 |
5.86e-47 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 157.34 E-value: 5.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVI---SDITN--PTAGEVLLNG-------IKISKMK 70
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLnrlNDLIPgaPDEGEVLLDGkdiydldVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYPNFFHwMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEEEN--AKVSTFSGGMKQRLGIAQALLHK 147
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKlKEELDERVEEALRKAALWDEVKdrLHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIED 209
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
3-233 |
7.27e-47 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 157.46 E-value: 7.27e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG-KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-----KMKSEIGYL 76
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIReqdpvELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAK--VSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADryPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 155 EPVSALDPIGR----REVLNLIKEIKKdtTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLhRNRENKLIIEITA 230
Cdd:cd03295 161 EPFGALDPITRdqlqEEFKRLQQELGK--TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL-RSPANDFVAEFVG 237
|
...
gi 558693083 231 KDQ 233
Cdd:cd03295 238 ADR 240
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
4-205 |
7.61e-47 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 154.71 E-value: 7.61e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLPQ 78
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEelrrrIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 ypnffhwmtaretltfmgqlsglkkeelsksipkmlekvglkeeenakvstFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 558693083 159 ALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd00267 110 GLDPASRERLLELLRELaEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
3-208 |
2.42e-46 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 159.49 E-value: 2.42e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---IGYLPQ- 78
Cdd:COG3842 6 LELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEkrnVGMVFQd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHwMTARETLTFmG-QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:COG3842 86 YALFPH-LTVAENVAF-GlRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 158 SALDPIGRREVLNLIKEIKKD--TTILLSTHilsDAEE---ICERFVIIKDGtKIE 208
Cdd:COG3842 164 SALDAKLREEMREELRRLQRElgITFIYVTH---DQEEalaLADRIAVMNDG-RIE 215
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
3-218 |
3.91e-46 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 158.32 E-value: 3.91e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS------- 71
Cdd:COG1135 2 IELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSErelraar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 -EIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:COG1135 82 rKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:COG1135 162 LLCDEATSALDPETTRSILDLLKDINRELglTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFAN 231
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
3-205 |
4.72e-46 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 154.20 E-value: 4.72e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-----SEIGYLP 77
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPppewrRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHwMTARETLTFMGQLSGLKKEElsKSIPKMLEKVGLKEE-ENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG4619 81 QEPALWG-GTVRDNLPFPFQLRERKFDR--ERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPDVLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 157 VSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:COG4619 158 TSALDPENTRRVEELLREYlaEEGRAVLWVSHDPEQIERVADRVLTLEAGR 208
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-205 |
7.53e-46 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 152.97 E-value: 7.53e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGYLPQ 78
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPkelarKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 ypnffhwmtaretltfmgqlsglkkeelsksipkMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03214 81 ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 159 ALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03214 127 HLDIAHQIELLELLRRLARERgkTVVMVLHDLNLAARYADRVILLKDGR 175
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
3-210 |
2.32e-45 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 152.90 E-value: 2.32e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE--------I 73
Cdd:COG2884 2 IRFENVSKRYPgGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRReipylrrrI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 154 DEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHilsdAEEICERF----VIIKDGTKIEDT 210
Cdd:COG2884 162 DEPTGNLDPETSWEIMELLEEInRRGTTVLIATH----DLELVDRMpkrvLELEDGRLVRDE 219
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
3-204 |
3.21e-45 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 152.30 E-value: 3.21e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK-------ISKMKSEIGY 75
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKltddkknINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEgMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
3-211 |
4.71e-45 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 152.46 E-value: 4.71e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------KMKSEIGY 75
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskkdinKLRRKVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTfMGQLS--GLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:COG1126 82 VFQQFNLFPHLTVLENVT-LAPIKvkKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLF 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTT 211
Cdd:COG1126 161 DEPTSALDPELVGEVLDVMRDLAKEgMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGP 219
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-214 |
6.12e-45 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 152.21 E-value: 6.12e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGYL 76
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHeiarlgIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETL----------TFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLH 146
Cdd:cd03219 81 FQIPRLFPELTVLENVmvaaqartgsGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITE 214
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELReRGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
3-217 |
9.83e-45 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 151.43 E-value: 9.83e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGYL 76
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHeraragIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTfMGqLSGLKKEELSKSIPKMLEKV-GLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03224 81 PEGRRIFPELTVEENLL-LG-AYARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLH 217
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDEgVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
3-207 |
2.74e-44 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 151.34 E-value: 2.74e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGYL 76
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHriarlgIART 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETL----------TFMGQLSGLKK-----EELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIA 141
Cdd:COG0411 85 FQNPRLFPELTVLENVlvaaharlgrGLLAALLRLPRarreeREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:COG0411 165 RALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErgITILLIEHDMDLVMGLADRIVVLDFGRVI 232
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
3-204 |
9.15e-43 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 144.45 E-value: 9.15e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI--AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGY 75
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLEslrknIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLtfmgqlsglkkeelsksipkmlekvglkeeenakvstFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03228 81 VPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAeEICERFVIIKDG 204
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTI-RDADRIIVLDDG 170
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-297 |
1.75e-42 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 148.31 E-value: 1.75e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKI---------------------AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLN 62
Cdd:COG4586 3 EVENLSKTYRVYEkepglkgalkglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 63 GIKISKMKSE----IG-----------YLPqypnffhwmtARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKV 127
Cdd:COG4586 83 GYVPFKRRKEfarrIGvvfgqrsqlwwDLP----------AIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 128 STFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:COG4586 153 RQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYnrERGTTILLTSHDMDDIEALCDRVIVIDHGR 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 206 KIEDTTITELLHRNRENKLIIEITAKDQNWIEVVkklPYVKNVEVVGLKIKVKVESiEINKNMLLQNALEHkVDIVKFKM 285
Cdd:COG4586 233 IIYDGSLEELKERFGPYKTIVLELAEPVPPLELP---RGGEVIEREGNRVRLEVDP-RESLAEVLARLLAR-YPVRDLTI 307
|
330
....*....|..
gi 558693083 286 SNDTLEEIFLKL 297
Cdd:COG4586 308 EEPPIEEVIRRI 319
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
3-216 |
4.05e-42 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 144.99 E-value: 4.05e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM------KSEIGYL 76
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpmhkraRLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 157 VSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:cd03218 161 FAGVDPIAVQDIQKIIKILKdRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
18-156 |
4.26e-42 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 142.02 E-value: 4.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIGYLPQYPNFFHWMTARETL 92
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDerkslRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 93 TFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKV----STFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
3-216 |
6.33e-42 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 144.85 E-value: 6.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFkGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-------EIG 74
Cdd:PRK09493 2 IEFKNVSKHF-GPTQVlHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVderlirqEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTFmG--QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIV 152
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMF-GplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 153 MDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEgMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-219 |
1.33e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 151.07 E-value: 1.33e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGY 75
Cdd:COG4987 334 LELEDVSFRYPGagRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDdlrrrIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFM-GQLSglkKEELSKsipkMLEKVGLKE-------------EENAkvSTFSGGMKQRLGIA 141
Cdd:COG4987 414 VPQRPHLFD-TTLRENLRLArPDAT---DEELWA----ALERVGLGDwlaalpdgldtwlGEGG--RRLSGGERRRLALA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRN 219
Cdd:COG4987 484 RALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHEELLAQN 560
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
3-219 |
1.36e-41 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 152.30 E-value: 1.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-----SEIGY 75
Cdd:COG2274 474 IELENVSFRYPGdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDpaslrRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFMG------------QLSGLkkEELSKSIPKMLE-KVGlkeeENAkvSTFSGGMKQRLGIAQ 142
Cdd:COG2274 554 VLQDVFLFS-GTIRENITLGDpdatdeeiieaaRLAGL--HDFIEALPMGYDtVVG----EGG--SNLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 143 ALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAeEICERFVIIKDGTKIEDTTITELLHRN 219
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEELLARK 700
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
3-204 |
1.43e-41 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 143.98 E-value: 1.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI--------KISKMKSEI 73
Cdd:TIGR02315 2 LEVENLSKVYpNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTditklrgkKLRKLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARETL--------TFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALL 145
Cdd:TIGR02315 82 GMIFQHYNLIERLTVLENVlhgrlgykPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRInkEDGITVIINLHQVDLAKKYADRIVGLKAG 222
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
20-204 |
1.58e-41 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 142.82 E-value: 1.58e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELQ---AGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG---------IKISKMKSEIGYLPQYPNFFHWMT 87
Cdd:cd03297 12 DFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsrkkINLPPQQRKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 88 ARETLTFmgqlsGLKKEELSK---SIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIG 164
Cdd:cd03297 92 VRENLAF-----GLKRKRNREdriSVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 558693083 165 RREVLNLIKEIKKDTTI--LLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03297 167 RLQLLPELKQIKKNLNIpvIFVTHDLSEAEYLADRIVVMEDG 208
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
2-216 |
1.69e-41 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 144.32 E-value: 1.69e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFkgkIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---------KSE 72
Cdd:cd03294 27 KEEILKKTGQT---VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMsrkelrelrRKK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIV 152
Cdd:cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 153 MDEPVSALDPIGRRE----VLNLIKEIKKdtTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:cd03294 184 MDEAFSALDPLIRREmqdeLLRLQAELQK--TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
3-216 |
1.88e-41 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 143.57 E-value: 1.88e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM------KSEIGYL 76
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLpmheraRLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSG-LKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMAVLEIRKdLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 156 PVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:TIGR04406 162 PFAGVDPIAVGDIKKIIKHLKeRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIV 223
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-219 |
3.66e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 149.91 E-value: 3.66e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYL 76
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAswrrqIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHwMTARETLTfMG-------------QLSGLkkEELSKSIPKMLE-KVGlkeeENAkvSTFSGGMKQRLGIAQ 142
Cdd:COG4988 417 PQNPYLFA-GTIRENLR-LGrpdasdeeleaalEAAGL--DEFVAALPDGLDtPLG----EGG--RGLSGGQAQRLALAR 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 143 ALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRN 219
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-204 |
4.93e-41 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 142.09 E-value: 4.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM------KSEIG 74
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpmhkraRLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:COG1137 162 EPFAGVDPIAVADIQKIIRHLKeRGIGVLITDHNVRETLGICDRAYIISEG 212
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
3-216 |
4.95e-41 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 142.20 E-value: 4.95e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAvnNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLPQY 79
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALppaERPVSMLFQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFmGQLSGLK--KEELSKsIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:COG3840 80 NNLFPHLTVAQNIGL-GLRPGLKltAEQRAQ-VEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 158 SALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:COG3840 158 SALDPALRQEMLDLVDELCRERglTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
4-214 |
4.56e-40 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 142.63 E-value: 4.56e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-------- 71
Cdd:PRK11153 3 ELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEkelrkarr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 EIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITE 214
Cdd:PRK11153 163 LCDEATSALDPATTRSILELLKDINRElgLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-215 |
4.73e-40 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 145.55 E-value: 4.73e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI---SKMKSE---IGYL 76
Cdd:COG1129 5 LEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVrfrSPRDAQaagIAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLtFMGQLSG----LKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIV 152
Cdd:COG1129 85 HQELNLVPNLSVAENI-FLGREPRrgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 153 MDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:COG1129 164 LDEPTASLTEREVERLFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
3-218 |
2.15e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 138.72 E-value: 2.15e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK------ISKMKSEIG 74
Cdd:TIGR04520 1 IEVENVSFSYPEseKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDtldeenLWEIRKKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:TIGR04520 81 MVFQNPdNQFVGATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHR 218
Cdd:TIGR04520 161 DEATSMLDPKGRKEVLETIRKLNKEEgiTVISITHDMEEAVL-ADRVIVMNKGKIVAEGTPREIFSQ 226
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-220 |
3.94e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 137.04 E-value: 3.94e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTkSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGY 75
Cdd:COG0410 4 LEVENLH-AGYGGIhVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHriarlgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTfMGQLSGLKKEELSKSIPKMLE---KvgLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIV 152
Cdd:COG0410 83 VPEGRRIFPSLTVEENLL-LGAYARRDRAEVRADLERVYElfpR--LKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 153 MDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNR 220
Cdd:COG0410 160 LDEPSLGLAPLIVEEIFEIIRRLNREgVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPE 228
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-208 |
2.57e-38 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 137.97 E-value: 2.57e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG----IKISKMKSEIGYL 76
Cdd:COG1118 1 MSIEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGrdlfTNLPPRERRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFmgqlsGLKKEELSKS-----IPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:COG1118 81 FQHYALFPHMTVAENIAF-----GLRVRPPSKAeirarVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 152 VMDEPVSALD----PIGRREVLNLIKEIKkdTTILLSTHILSDAEEICERFVIIKDGtKIE 208
Cdd:COG1118 156 LLDEPFGALDakvrKELRRWLRRLHDELG--GTTVFVTHDQEEALELADRVVVMNQG-RIE 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
3-208 |
3.87e-38 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 134.67 E-value: 3.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLPQ- 78
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLpphKRPVNTVFQn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03300 81 YALFPH-LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 159 ALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGtKIE 208
Cdd:cd03300 160 ALDLKLRKDMQLELKRLQKElgITFVFVTHDQEEALTMSDRIAVMNKG-KIQ 210
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
3-216 |
9.74e-38 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 134.89 E-value: 9.74e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KG----KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS--------KM 69
Cdd:TIGR04521 1 IKLKNVSYIYqPGtpfeKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITakkkkklkDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYP--NFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLkEEENAKVSTF--SGGMKQRLGIAQALL 145
Cdd:TIGR04521 81 RKKVGLVFQFPehQLFE-ETVYKDIAFGPKNLGLSEEEAEERVKEALELVGL-DEEYLERSPFelSGGQMRRVAIAGVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:TIGR04521 159 MEPEVLILDEPTAGLDPKGRKEILDLFKRLhkEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVF 231
|
|
| ABC_ATP_SaoA |
NF040729 |
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC ... |
2-227 |
1.07e-37 |
|
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC transporter in which both the permease subunit SaoP, and the substrate-binding protein SaoB, are nearly always selenoproteins that were unrecognized as such until recently (2022). The SAO system is found in Clostridium difficile and various other anaerobic heterotrophs.
Pssm-ID: 468693 [Multi-domain] Cd Length: 248 Bit Score: 134.10 E-value: 1.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVN----NFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLP 77
Cdd:NF040729 1 KLKIQNISKTFINNKKENevlkDISFDVEEGEFVSLLGPSGCGKTTLLTIIAGFQNATSGEILVNGNEVTKPGPDRGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:NF040729 81 QNYALFPWMTVKENIEYPMKQQKMPKQEREKRLNELLEMAQLTGKENLYPHQISGGMKQRTAVIRALACKPEVLLMDEPL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 158 SALDpIGRREVLNLIKE---IKKDTTILLSTHILSDAEEICERFVII--KDGTKIEDTTITELLHRNRENKLIIE 227
Cdd:NF040729 161 GAVD-FQMRQILQEELEsiwLKDKTTVLMVTHDVDEAVYLSDRVIVMsrDKGKILEDLKIDLPRPRNRESEKYLE 234
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-207 |
1.12e-37 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 131.01 E-value: 1.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISkmkseigylpqypnf 82
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHwmtaretltfmgqlsglkkeelsksipkmlekvGLKEEENAKVST---FSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:cd03216 66 FA---------------------------------SPRDARRAGIAMvyqLSVGERQMVEIARALARNARLLILDEPTAA 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 160 LDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:cd03216 113 LTPAEVERLFKVIRRLRAQgVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
10-231 |
1.22e-37 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 136.91 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 10 KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---------KSEIGYLPQYP 80
Cdd:TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQspvelrevrRKKIGMVFQQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSAL 160
Cdd:TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 161 DPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLhRNRENKLIIEITAK 231
Cdd:TIGR01186 161 DPLIRDSMQDELKKLQATlqKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL-RNPANEYVEEFIGK 232
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
3-204 |
2.27e-37 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 132.15 E-value: 2.27e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS--------EI 73
Cdd:cd03292 1 IEFINVTKTYPNGTaALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGraipylrrKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 154 DEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKInKAGTTVVVATHAKELVDTTRHRVIALERG 212
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
12-209 |
3.56e-37 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 132.07 E-value: 3.56e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 12 FKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----IGYLPQYPNFFHW-M 86
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKflrrIGVVFGQKTQLWWdL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 87 TARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRR 166
Cdd:cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 558693083 167 EVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIED 209
Cdd:cd03267 191 NIRNFLKEYNRErgTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
3-218 |
3.59e-37 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 135.20 E-value: 3.59e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---IGYLPQ- 78
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKdrnIAMVFQs 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 ---YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:COG3839 84 yalYPH----MTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 156 PVSALDPIGRREvlnLIKEIKK-----DTTILLSTHilsDAEE---ICERFVIIKDGtKIE--DTTiTELLHR 218
Cdd:COG3839 160 PLSNLDAKLRVE---MRAEIKRlhrrlGTTTIYVTH---DQVEamtLADRIAVMNDG-RIQqvGTP-EELYDR 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-208 |
1.73e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 130.54 E-value: 1.73e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLP 77
Cdd:cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVpvqERNVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHWMTARETLTFmgqlsGLK---------KEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:cd03296 81 QHYALFRHMTVFDNVAF-----GLRvkprserppEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGtKIE 208
Cdd:cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELhvTTVFVTHDQEEALEVADRVVVMNKG-RIE 216
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
3-204 |
4.09e-36 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 128.53 E-value: 4.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---IGYLPQ- 78
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKdrdIAMVFQn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 ---YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03301 81 yalYPH----MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 156 PVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:cd03301 157 PLSNLDAKLRVQMRAELKRLQQrlGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-193 |
8.70e-36 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 129.21 E-value: 8.70e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKG----KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYL 76
Cdd:COG4525 2 SMLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADRGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG4525 82 FQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEP 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDT--TILLSTHilsDAEE 193
Cdd:COG4525 162 FGALDALTREQMQELLLDVWQRTgkGVFLITH---SVEE 197
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
3-218 |
2.46e-35 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 127.51 E-value: 2.46e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK----------------------GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVL 60
Cdd:COG1134 5 IEVENVSKSYRlyhepsrslkelllrrrrtrreEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 61 LNGiKISkmkS--EI--GYLPQypnffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQ 136
Cdd:COG1134 85 VNG-RVS---AllELgaGFHPE-------LTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 137 RLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:COG1134 154 RLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESgRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEV 233
|
...
gi 558693083 216 LHR 218
Cdd:COG1134 234 IAA 236
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
5-204 |
3.03e-35 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 135.14 E-value: 3.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFK--GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYLPQ 78
Cdd:TIGR01257 931 VKNLVKIFEpsGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETnldaVRQSLGMCPQ 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:TIGR01257 1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 159 ALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:TIGR01257 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
3-216 |
3.79e-35 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 127.61 E-value: 3.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF--------KGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE- 72
Cdd:TIGR02769 3 LEVRDVTHTYrtgglfgaKQRAPVlTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 ---------IGYLPQYPNFFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKV-STFSGGMKQRLGIA 141
Cdd:TIGR02769 83 rrafrrdvqLVFQDSPSAVNPRMTVRQIIGEpLRHLTSLDESEQKARIAELLDMVGLRSEDADKLpRQLSGGQLQRINIA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:TIGR02769 163 RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfgTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
3-218 |
8.25e-35 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 125.91 E-value: 8.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKgKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---IGYLPQY 79
Cdd:cd03299 1 LKVENLSKDWK-EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEkrdISYVPQN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 160 LDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:cd03299 160 LDVRTKEKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1-214 |
1.26e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 127.09 E-value: 1.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVT-----KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI-------KISK 68
Cdd:PRK13637 1 MSIKIENLThiymeGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVditdkkvKLSD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 69 MKSEIGYLPQYPNF-FHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTF--SGGMKQRLGIAQALL 145
Cdd:PRK13637 81 IRKKVGLVFQYPEYqLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFelSGGQKRRVAIAGVVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITE 214
Cdd:PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
3-208 |
1.65e-34 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 125.63 E-value: 1.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------------KM 69
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDtarslsqqkglirQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHWMTARETLtFMG--QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:PRK11264 84 RQHVGFVFQNFNLFPHRTVLENI-IEGpvIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIKKDT-TILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKrTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
4-205 |
2.89e-34 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 123.52 E-value: 2.89e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK--SEIGYLPQYP 80
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKErrKSIGYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NF-FHWMTARETLTFMGQLSGLKKEElsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:cd03226 81 DYqLFTDSVREELLLGLKELDAGNEQ----AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 558693083 160 LDPIGRREVLNLIKEIKK-DTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03226 157 LDYKNMERVGELIRELAAqGKAVIVITHDYEFLAKVCDRVLLLANGA 203
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-215 |
3.01e-34 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 130.15 E-value: 3.01e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISK----MKSEIG 74
Cdd:COG3845 4 PALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSprdaIALGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTfMGQLSG----LKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:COG3845 84 MVHQHFMLVPNLTVAENIV-LGLEPTkggrLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKI-----EDTTITEL 215
Cdd:COG3845 163 LILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVMAIADRVTVLRRGKVVgtvdtAETSEEEL 233
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
2-204 |
7.87e-34 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 127.14 E-value: 7.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSF------------KGK------------IAVNNFSMELQAGE-CVgLIGPNGAGKSTLIKVISDITNPTA 56
Cdd:COG4175 3 KIEVRNLYKIFgkrperalklldQGKskdeilektgqtVGVNDASFDVEEGEiFV-IMGLSGSGKSTLVRCLNRLIEPTA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 57 GEVLLNGIKISKMKSE---------IGYLPQypNF--FHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENA 125
Cdd:COG4175 82 GEVLIDGEDITKLSKKelrelrrkkMSMVFQ--HFalLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWEDS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 126 KVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRR----EVLNLIKEIKKdtTILLSTHILSDAEEICERFVII 201
Cdd:COG4175 160 YPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRRemqdELLELQAKLKK--TIVFITHDLDEALRLGDRIAIM 237
|
...
gi 558693083 202 KDG 204
Cdd:COG4175 238 KDG 240
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
3-204 |
8.26e-34 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 121.55 E-value: 8.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGY 75
Cdd:cd03246 1 LEVENVSFRYPGaePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNelgdhVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQypnffhwmtarETLTFMGQLSglkkeelsksipkmlekvglkeeENakvsTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03246 81 LPQ-----------DDELFSGSIA-----------------------EN----ILSGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 558693083 156 PVSALDPIGRREVLNLIKEIKK-DTTILLSTHILSdAEEICERFVIIKDG 204
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAaGATRIVIAHRPE-TLASADRILVLEDG 171
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-216 |
9.57e-34 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 123.66 E-value: 9.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVL------LNGIKISKMKSEIGY- 75
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrlfgerRGGEDVWELRKRIGLv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 ---LPQYpnFFHWMTARETLtfmgqLSGL----------KKEELSKSIpKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQ 142
Cdd:COG1119 84 spaLQLR--FPRDETVLDVV-----LSGFfdsiglyrepTDEQRERAR-ELLELLGLAHLADRPFGTLSQGEQRRVLIAR 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 143 ALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHilsDAEEI--C-ERFVIIKDGTKIEDTTITELL 216
Cdd:COG1119 156 ALVKDPELLILDEPTAGLDLGARELLLALLDKLaaEGAPTLVLVTH---HVEEIppGiTHVLLLKDGRVVAAGPKEEVL 231
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-209 |
2.78e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 121.54 E-value: 2.78e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIG 74
Cdd:cd03245 2 RIEFRNVSFSYPNqeIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLdpadlRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFhWMTARETLTFMGQ------------LSGLkkEELSKSIPKMLE-KVGlkeeENAkvSTFSGGMKQRLGIA 141
Cdd:cd03245 82 YVPQDVTLF-YGTLRDNITLGAPladderilraaeLAGV--TDFVNKHPNGLDlQIG----ERG--RGLSGGQRQAVALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSdAEEICERFVIIKDGTKIED 209
Cdd:cd03245 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRIVAD 219
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
3-193 |
1.21e-32 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 120.96 E-value: 1.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQYPNF 82
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP 162
Cdd:PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
170 180 190
....*....|....*....|....*....|...
gi 558693083 163 IGRREVLNLIKEIKKDT--TILLSTHilsDAEE 193
Cdd:PRK11248 162 FTREQMQTLLLKLWQETgkQVLLITH---DIEE 191
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-221 |
1.41e-32 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 121.28 E-value: 1.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIG 74
Cdd:PRK13635 5 IIRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEetvwdVRRQVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK13635 85 MVFQNPdNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIK--KDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRNRE 221
Cdd:PRK13635 165 DEATSMLDPRGRREVLETVRQLKeqKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHM 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
3-204 |
2.31e-32 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 123.02 E-value: 2.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLPQY 79
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVppyQRPINMMFQS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 160 LDPIGRR----EVLNLIKEIkkDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK11607 180 LDKKLRDrmqlEVVDILERV--GVTCVMVTHDQEEAMTMAGRIAIMNRG 226
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
3-209 |
3.08e-32 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 118.79 E-value: 3.08e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF----------------------KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVL 60
Cdd:cd03220 1 IELENVSKSYptykggssslkklgilgrkgevGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 61 LNGIKISKMKSEIGYLPQypnffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGI 140
Cdd:cd03220 81 VRGRVSSLLGLGGGFNPE-------LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAF 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 141 AQALLHKPSLIVMDEPVSALDPIGRREVLNLIKE-IKKDTTILLSTHILSDAEEICERFVIIKDGTKIED 209
Cdd:cd03220 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRElLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
21-205 |
3.17e-32 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 118.36 E-value: 3.17e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 21 FSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM---KSEIGYLPQYPNFFHWMTArETLTFMGQ 97
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAppaDRPVSMLFQENNLFAHLTV-EQNVGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 98 LSGLK-KEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK 176
Cdd:cd03298 96 SPGLKlTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175
|
170 180 190
....*....|....*....|....*....|.
gi 558693083 177 KDT--TILLSTHILSDAEEICERFVIIKDGT 205
Cdd:cd03298 176 AETkmTVLMVTHQPEDAKRLAQRVVFLDNGR 206
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
3-205 |
5.11e-32 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 125.51 E-value: 5.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI--AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG----IKISKMKSEIGYL 76
Cdd:TIGR01257 1938 LRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGksilTNISDVHQNMGYC 2017
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 558693083 157 VSALDPIGRREVLNLIKE-IKKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:TIGR01257 2098 TTGMDPQARRMLWNTIVSiIREGRAVVLTSHSMEECEALCTRLAIMVKGA 2147
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
3-219 |
6.56e-32 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 124.12 E-value: 6.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVtkSF---KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IG 74
Cdd:COG1132 340 IEFENV--SFsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLEslrrqIG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHwMTARETLTFmgqlsGLKK---EELSKSipkmLEKVGLKE-------------EENAkvSTFSGGMKQRL 138
Cdd:COG1132 418 VVPQDTFLFS-GTIRENIRY-----GRPDatdEEVEEA----AKAAQAHEfiealpdgydtvvGERG--VNLSGGQRQRI 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 139 GIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITEL 215
Cdd:COG1132 486 AIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHRLStirNADRI----LVLDDGRIVEQGTHEEL 561
|
....
gi 558693083 216 LHRN 219
Cdd:COG1132 562 LARG 565
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-156 |
8.56e-32 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 123.25 E-value: 8.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLL-NGIKiskmkseIGYLPQYPNFF 83
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIpKGLR-------IGYLPQEPPLD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 HWMTARETLtFMG--QLSGLKKE--ELSKSIP-----------------------------KMLEKVGLKEEE-NAKVST 129
Cdd:COG0488 74 DDLTVLDTV-LDGdaELRALEAEleELEAKLAepdedlerlaelqeefealggweaearaeEILSGLGFPEEDlDRPVSE 152
|
170 180
....*....|....*....|....*..
gi 558693083 130 FSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG0488 153 LSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
3-209 |
3.25e-31 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 114.72 E-value: 3.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYL 76
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDlekaLSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFhwmtaretltfmgqlsglkkeelSKSIpkmLEKVGLKeeenakvstFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:cd03247 81 NQRPYLF-----------------------DTTL---RNNLGRR---------FSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEIcERFVIIKDGTKIED 209
Cdd:cd03247 126 TVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQ 177
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
3-197 |
3.76e-31 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 118.68 E-value: 3.76e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF--KGKI---------AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS 71
Cdd:COG4608 8 LEVRDLKKHFpvRGGLfgrtvgvvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 EigYLPQY----------------PNffhwMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEE-------Enakv 127
Cdd:COG4608 88 R--ELRPLrrrmqmvfqdpyaslnPR----MTVGDIIAEPLRIHGLAsKAERRERVAELLELVGLRPEhadryphE---- 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 128 stFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICER 197
Cdd:COG4608 158 --FSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDElgLTYLFISHDLSVVRHISDR 227
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-182 |
3.94e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 116.75 E-value: 3.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMkSE-------IGY 75
Cdd:COG4674 11 LYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGL-DEheiarlgIGR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETL------------TFMGQLSGLKKEElsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQA 143
Cdd:COG4674 90 KFQKPTVFEELTVFENLelalkgdrgvfaSLFARLTAEERDR----IEEVLETIGLTDKADRLAGLLSHGQKQWLEIGML 165
|
170 180 190
....*....|....*....|....*....|....*....
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTIL 182
Cdd:COG4674 166 LAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVV 204
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
3-205 |
1.01e-30 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 114.84 E-value: 1.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-----GKI--AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLN----GIKISKM-- 69
Cdd:COG4778 5 LEVENLSKTFTlhlqgGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQAsp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 -------KSEIGYLPQypnFFHWM---TARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEE-ENAKVSTFSGGMKQRL 138
Cdd:COG4778 85 reilalrRRTIGYVSQ---FLRVIprvSALDVVAEPLLERGVDREEARARARELLARLNLPERlWDLPPATFSGGEQQRV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 139 GIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:COG4778 162 NIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARgTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-208 |
1.07e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 120.17 E-value: 1.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLnGIKIskmksEIGYLPQYPNF 82
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV-----KIGYFDQHQEE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHwmtarETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:COG0488 390 LD-----PDKTVLDELRDGAPGGTEQEVRGYLGRFLFSGDDaFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLD 464
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 558693083 162 PIGRREVLNLIKEIkkDTTILLSTHilsD---AEEICERFVIIKDGTKIE 208
Cdd:COG0488 465 IETLEALEEALDDF--PGTVLLVSH---DryfLDRVATRILEFEDGGVRE 509
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
13-225 |
1.15e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 116.34 E-value: 1.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 13 KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK------SEIGYLPQYP-NFFHW 85
Cdd:PRK13633 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEnlwdirNKAGMVFQNPdNQIVA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGR 165
Cdd:PRK13633 101 TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 166 REVLNLIKEIKKD--TTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRNRENKLI 225
Cdd:PRK13633 181 REVVNTIKELNKKygITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
21-216 |
1.27e-30 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 115.06 E-value: 1.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 21 FSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI---KISKMKSEIGYLPQYPNFFHWMTARETLTfMGQ 97
Cdd:PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdhtTTPPSRRPVSMLFQENNLFSHLTVAQNIG-LGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 98 LSGLK-KEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI- 175
Cdd:PRK10771 97 NPGLKlNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVc 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 558693083 176 -KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK10771 177 qERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-186 |
2.24e-30 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 114.75 E-value: 2.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVI---SDITnPTA---GEVLLNGIKISKMK----- 70
Cdd:COG1117 11 KIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmNDLI-PGArveGEILLDGEDIYDPDvdvve 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 --SEIGYLPQYPNFFHwMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEE------ENAkvSTFSGGMKQRLGIA 141
Cdd:COG1117 90 lrRRVGMVFQKPNPFP-KSIYDNVAYGLRLHGIKsKSELDEIVEESLRKAALWDEvkdrlkKSA--LGLSGGQQQRLCIA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTH 186
Cdd:COG1117 167 RALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTH 211
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
3-204 |
2.51e-30 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 114.77 E-value: 2.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQYPNF 82
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWMTARETLTFmgqlsGLKKEELSKSIpKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP 162
Cdd:PRK11247 93 LPWKKVIDNVGL-----GLKGQWRDAAL-QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 163 IGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK11247 167 LTRIEMQDLIESLwqQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
18-204 |
3.79e-30 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 113.71 E-value: 3.79e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLPQYPNFFHWMTARET--LTFM 95
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENiaLAVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 96 GQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI 175
Cdd:TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160
|
170 180 190
....*....|....*....|....*....|.
gi 558693083 176 KKDT--TILLSTHILSDAEEICERFVIIKDG 204
Cdd:TIGR01184 161 WEEHrvTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
3-215 |
5.32e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 114.40 E-value: 5.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------KMKSEIG 74
Cdd:PRK13639 2 LETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkksllEVRKTVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK13639 82 IVFQNPdDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 154 DEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:PRK13639 162 DEPTSGLDPMGASQIMKLLYDLnKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
3-208 |
6.28e-30 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 113.72 E-value: 6.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDIT--NP---TAGEVLLNGIKI-------SKMK 70
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlNPevtITGSIVYNGHNIysprtdtVDLR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYPNFFHwMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEEENAKVST----FSGGMKQRLGIAQALL 145
Cdd:PRK14239 86 KEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKdKQVLDEAVEKSLKGASIWDEVKDRLHDsalgLSGGQQQRVCIARVLA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
3-216 |
6.61e-30 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 113.45 E-value: 6.61e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS------KMKSEIGYL 76
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllplhaRARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQL-SGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 156 PVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRdSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
3-193 |
7.11e-30 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 112.19 E-value: 7.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP---TAGEVLLNGIKISKMKSE---IGYL 76
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPAEqrrIGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFmGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:COG4136 82 FQDDLLFPHLSVGENLAF-ALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEP 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDTTI--LLSTHILSDAEE 193
Cdd:COG4136 161 FSKLDAALRAQFREFVFEQIRQRGIpaLLVTHDEEDAPA 199
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
3-221 |
7.48e-30 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 113.55 E-value: 7.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----SKMKSEIGYLPQ 78
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeglpGHQIARMGVVRT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPN--FFHWMTARETLTF-------MGQLSGLKK---------EELSKSIpKMLEKVGLKEEENAKVSTFSGGMKQRLGI 140
Cdd:PRK11300 86 FQHvrLFREMTVIENLLVaqhqqlkTGLFSGLLKtpafrraesEALDRAA-TWLERVGLLEHANRQAGNLAYGQQRRLEI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 141 AQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELlhR 218
Cdd:PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhnVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI--R 242
|
...
gi 558693083 219 NRE 221
Cdd:PRK11300 243 NNP 245
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
3-208 |
9.44e-30 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 115.81 E-value: 9.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYL----PQ 78
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVntvfQS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK09452 95 YALFPH-MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 159 ALDPIGRREVLNLIKEIKKDT--TILLSTHilsDAEE---ICERFVIIKDGtKIE 208
Cdd:PRK09452 174 ALDYKLRKQMQNELKALQRKLgiTFVFVTH---DQEEaltMSDRIVVMRDG-RIE 224
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-208 |
9.71e-30 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 115.57 E-value: 9.71e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS---EIGYLP 77
Cdd:PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHArdrKVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHWMTARETLTFmgqlsGLK---------KEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:PRK10851 81 QHYALFRHMTVFDNIAF-----GLTvlprrerpnAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 149 SLIVMDEPVSALDPIGRRE----VLNLIKEIKkdTTILLSTHILSDAEEICERFVIIKDGtKIE 208
Cdd:PRK10851 156 QILLLDEPFGALDAQVRKElrrwLRQLHEELK--FTSVFVTHDQEEAMEVADRVVVMSQG-NIE 216
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
11-194 |
1.64e-29 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 110.79 E-value: 1.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 11 SFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGikiskmKSEIGYLPQ-------YPnff 83
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG------GARVAYVPQrsevpdsLP--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 hwMTARETLTfMGQ-----LSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:NF040873 72 --LTVRDLVA-MGRwarrgLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 159 ALDPIGRREVLNLIKEIKKD-TTILLSTHilsDAEEI 194
Cdd:NF040873 149 GLDAESRERIIALLAEEHARgATVVVVTH---DLELV 182
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-216 |
2.08e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 112.17 E-value: 2.08e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGY 75
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAelarrRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPnffhwmtareTLTF---------MGQLS-GLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALL 145
Cdd:PRK13548 81 LPQHS----------SLSFpftveevvaMGRAPhGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 146 ------HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK13548 151 qlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHErgLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
2-186 |
4.95e-29 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 110.44 E-value: 4.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGK----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS---DITNPTAGEVLLNG--IKISKMKSE 72
Cdd:cd03234 3 VLPWWDVGLKAKNWnkyaRILNDVSLHVESGQVMAILGSSGSGKTTLLDAISgrvEGGGTTSGQILFNGqpRKPDQFQKC 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYPNFFHWMTARETLTFMGQLSG---LKKEELSKSIPKMLEK-VGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLprkSSDAIRKKRVEDVLLRdLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
|
170 180 190
....*....|....*....|....*....|....*....
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTH 186
Cdd:cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLaRRNRIVILTIH 201
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
22-218 |
6.06e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 113.28 E-value: 6.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 22 SMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG---------IKISKMKSEIGYLPQYPNFFHWMTARETL 92
Cdd:TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlfdsrkgIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 93 TFmgqlsGLKK---EELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVL 169
Cdd:TIGR02142 97 RY-----GMKRarpSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 170 NLIKEIKKDTTI--LLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:TIGR02142 172 PYLERLHAEFGIpiLYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
4-219 |
8.96e-29 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 110.32 E-value: 8.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSF---KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIGY 75
Cdd:cd03249 2 EFKNVSFRYpsrPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLnlrwlRSQIGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFmGQLSG--------LKKEELSKSIPKMLEkvGLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:cd03249 82 VSQEPVLFD-GTIAENIRY-GKPDAtdeeveeaAKKANIHDFIMSLPD--GYDTLVGERGSQLSGGQKQRIAIARALLRN 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEICerfvIIKDGTKIEDTTITELLHRN 219
Cdd:cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLStirNADLIA----VLQNGQVVEQGTHDELMAQK 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
3-213 |
1.09e-28 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 109.91 E-value: 1.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKI---AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS------- 71
Cdd:PRK11629 6 LQCDNLCKRYQeGSVqtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaakaelr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 --EIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:PRK11629 86 nqKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEIcERFVIIKDGTKIEDTTIT 213
Cdd:PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELnrLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSLM 230
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
14-205 |
1.84e-28 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 114.46 E-value: 1.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 14 GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLPQYPNFFHwMTA 88
Cdd:COG4618 344 KRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREelgrhIGYLPQDVELFD-GTI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 89 RETLTFMGQLSGlkkeelsksipkmlEKVglkeEENAKV----------------------STFSGGMKQRLGIAQALLH 146
Cdd:COG4618 423 AENIARFGDADP--------------EKV----VAAAKLagvhemilrlpdgydtrigeggARLSGGQRQRIGLARALYG 484
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTH---ILSdaeeICERFVIIKDGT 205
Cdd:COG4618 485 DPRLVVLDEPNSNLDDEGEAALAAAIRALKARgATVVVITHrpsLLA----AVDKLLVLRDGR 543
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
3-207 |
4.87e-28 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 110.58 E-value: 4.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG---IKISKMKSEIGYLPQ- 78
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGedvTHRSIQQRDICMVFQs 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK11432 87 YALFPH-MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 159 ALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGtKI 207
Cdd:PRK11432 166 NLDANLRRSMREKIRELQQqfNITSLYVTHDQSEAFAVSDTVIVMNKG-KI 215
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-219 |
5.32e-28 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 107.70 E-value: 5.32e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-----SEIGY 75
Cdd:cd03254 2 EIEFENVNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISrkslrSMIGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKV-----GLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:cd03254 82 VLQDTFLFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFImklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLStikNADKI----LVLDDGKIIEEGTHDELLAKK 228
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
3-219 |
5.89e-28 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 107.70 E-value: 5.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF--KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI-----KISKMKSEIGY 75
Cdd:cd03251 1 VEFKNVTFRYpgDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHdvrdyTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFmgQLSGLKKEELSKS---------IPKMLEKVGLKEEENAkvSTFSGGMKQRLGIAQALLH 146
Cdd:cd03251 81 VSQDVFLFN-DTVAENIAY--GRPGATREEVEEAaraanahefIMELPEGYDTVIGERG--VKLSGGQRQRIAIARALLK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLStieNADRI----VVLEDGKIVERGTHEELLAQG 227
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
18-217 |
6.52e-28 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 108.62 E-value: 6.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----------------IGYL-PQYp 80
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAqrkafrrdiqmvfqdsISAVnPRK- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 nffhwmTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKV-STFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK10419 107 ------TVREIIREpLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRpPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 159 ALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLH 217
Cdd:PRK10419 181 NLDLVLQAGVIRLLKKLQQqfGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
20-186 |
8.43e-28 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 106.35 E-value: 8.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELqaGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------KMKSEIGYLPQYPN--FFHwMTARE 90
Cdd:TIGR01166 12 NFAAER--GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDysrkgllERRQRVGLVFQDPDdqLFA-ADVDQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 91 TLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN 170
Cdd:TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
|
170
....*....|....*..
gi 558693083 171 LIKEIKKD-TTILLSTH 186
Cdd:TIGR01166 169 ILRRLRAEgMTVVISTH 185
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-193 |
9.16e-28 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 112.38 E-value: 9.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK-IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGYL 76
Cdd:TIGR02857 322 LEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAdswrdQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHwMTARETLTF------------MGQLSGLkkEELSKSIPKMLE-KVGlkeeENAkvSTFSGGMKQRLGIAQA 143
Cdd:TIGR02857 402 PQHPFLFA-GTIAENIRLarpdasdaeireALERAGL--DEFVAALPQGLDtPIG----EGG--AGLSGGQAQRLALARA 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEE 193
Cdd:TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAAL 522
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-207 |
1.07e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 106.10 E-value: 1.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKG------KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTA--GEVLLNGIKISKM--K 70
Cdd:cd03213 2 VTLSFRNLTVTVKSspsksgKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPLDKRsfR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYPNFFHWMTARETLTFMGQLSGLkkeelsksipkmlekvglkeeenakvstfSGGMKQRLGIAQALLHKPSL 150
Cdd:cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSL 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILS-DAEEICERFVIIKDGTKI 207
Cdd:cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTgRTIICSIHQPSsEIFELFDKLLLLSQGRVI 191
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
3-194 |
1.17e-27 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 106.29 E-value: 1.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----IGYLPQ 78
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEphenILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKkeelSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHGGA----QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTT 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 558693083 159 ALDPIGRREVLNLIKE-IKKDTTILLSTHI---LSDAEEI 194
Cdd:TIGR01189 157 ALDKAGVALLAGLLRAhLARGGIVLLTTHQdlgLVEAREL 196
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-216 |
2.14e-27 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 107.02 E-value: 2.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGY 75
Cdd:PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRqlarrLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARET--------LTFMGQLSGLKKEELSKSipkmLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:PRK11231 81 LPQHHLTPEGITVRELvaygrspwLSLWGRLSAEDNARVNQA----MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNtQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
3-221 |
2.37e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 107.51 E-value: 2.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG---KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIG 74
Cdd:PRK13650 5 IEVKNLTFKYKEdqeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEenvwdIRHKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK13650 85 MVFQNPdNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIIL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILsDAEEICERFVIIKDGtKIEDT-TITELLHRNRE 221
Cdd:PRK13650 165 DEATSMLDPEGRLELIKTIKGIRDDyqMTVISITHDL-DEVALSDRVLVMKNG-QVESTsTPRELFSRGND 233
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1-263 |
2.74e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 107.86 E-value: 2.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKI-----AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAG------------------ 57
Cdd:PRK13651 1 MQIKVKNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiewifkdeknkkktkek 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 58 EVLLNGIKISKMKS-----------EIGYLPQYPNFFHWMTARETLTFMGQLS-GLKKEELSKSIPKMLEKVGLkEEENA 125
Cdd:PRK13651 81 EKVLEKLVIQKTRFkkikkikeirrRVGVVFQFAEYQLFEQTIEKDIIFGPVSmGVSKEEAKKRAAKYIELVGL-DESYL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 126 KVSTF--SGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIK 202
Cdd:PRK13651 160 QRSPFelSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLnKQGKTIILVTHDLDNVLEWTKRTIFFK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 203 DGTKIEDTTITELLhrnRENKLIIEitakdqNWIEVVKKLPYVKNVEVVGLKIKvKVESIE 263
Cdd:PRK13651 240 DGKIIKDGDTYDIL---SDNKFLIE------NNMEPPKLLNFVNKLEKKGIDVP-KVTSIE 290
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-204 |
3.44e-27 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 106.64 E-value: 3.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS-----DITNPTAGEVLLNGIK--------ISKM 69
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSglitgDKSAGSHIELLGRTVQregrlardIRKS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHWMTARETL------------TFMGQLSGLKKEELSKSipkmLEKVGLKEEENAKVSTFSGGMKQR 137
Cdd:PRK09984 85 RANTGYIFQQFNLVNRLSVLENVligalgstpfwrTCFSWFTREQKQRALQA----LTRVGMVHFAHQRVSTLSGGQQQR 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 138 LGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdgITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
4-232 |
3.55e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 106.61 E-value: 3.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYL 76
Cdd:PRK13632 9 KVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKenlkeIRKKIGII 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:PRK13632 89 FQNPdNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKDT--TILLSTHilsDAEEI--CERFVIIKDGTKIEDTTITELLhrnrENKLIIEITAK 231
Cdd:PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRkkTLISITH---DMDEAilADKVIVFSEGKLIAQGKPKEIL----NNKEILEKAKI 241
|
.
gi 558693083 232 D 232
Cdd:PRK13632 242 D 242
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
3-216 |
4.64e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 106.86 E-value: 4.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------KMKSEIG 74
Cdd:PRK13636 6 LKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDysrkglmKLRESVG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK13636 86 MVFQDPdNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-208 |
5.74e-27 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 109.62 E-value: 5.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK-------------ISKM 69
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEmrfasttaalaagVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQypnffhwMTARETLtFMGQLSG----LKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALL 145
Cdd:PRK11288 85 YQELHLVPE-------MTVAENL-YLGQLPHkggiVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 146 HKPSLIVMDEPVSALDpigRREVLNL---IKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK11288 157 RNARVIAFDEPTSSLS---AREIEQLfrvIRELRAEgRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
3-217 |
7.36e-27 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 107.10 E-value: 7.36e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK-------------IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM 69
Cdd:PRK15079 9 LEVADLKVHFDIKdgkqwfwqppktlKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 K--------SEIGYLPQYP--NFFHWMT-----ARETLTFMGQLSglkKEELSKSIPKMLEKVGLKEEE-NAKVSTFSGG 133
Cdd:PRK15079 89 KddewravrSDIQMIFQDPlaSLNPRMTigeiiAEPLRTYHPKLS---RQEVKDRVKAMMLKVGLLPNLiNRYPHEFSGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 134 MKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIEDTT 211
Cdd:PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMglSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245
|
....*.
gi 558693083 212 ITELLH 217
Cdd:PRK15079 246 YDEVYH 251
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
3-202 |
8.03e-27 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 104.78 E-value: 8.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-----KGKI--AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLN---------GIKI 66
Cdd:TIGR02324 2 LEVEDLSKTFtlhqqGGVRlpVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRhegawvdlaQASP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 67 SKM----KSEIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEE-ENAKVSTFSGGMKQRLGIA 141
Cdd:TIGR02324 82 REVlevrRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERlWHLPPATFSGGEQQRVNIA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSthILSDAE---EICERFVIIK 202
Cdd:TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIG--IFHDEEvreLVADRVMDVT 223
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-216 |
8.26e-27 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 109.53 E-value: 8.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK--IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGY 75
Cdd:PRK11160 339 LTLNNVSFTYPDQpqPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADyseaaLRQAISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFMGQLSGlkKEELSKsipkMLEKVGLKE--EENAKVSTF--------SGGMKQRLGIAQALL 145
Cdd:PRK11160 419 VSQRVHLFS-ATLRDNLLLAAPNAS--DEALIE----VLQQVGLEKllEDDKGLNAWlgeggrqlSGGEQRRLGIARALL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEIcERFVIIKDGTKIEDTTITELL 216
Cdd:PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQELL 561
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
24-218 |
1.23e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 107.11 E-value: 1.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 24 ELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG---------IKISKMKSEIGYLPQYPNFFHWMTARETLTF 94
Cdd:COG4148 21 TLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlqdsargIFLPPHRRRIGYVFQEARLFPHLSVRGNLLY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 95 mgqlsGLKKEELSKSIPKMLEKV---GLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNL 171
Cdd:COG4148 101 -----GRKRAPRAERRISFDEVVellGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPY 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 172 IKEIKKDTTI--LLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:COG4148 176 LERLRDELDIpiLYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSR 224
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
3-204 |
1.47e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 105.20 E-value: 1.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYL 76
Cdd:PRK13647 5 IEVEDLHFRYKdGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAenekwVRSKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPN--FFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK13647 85 FQDPDdqVFS-STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQgKTVIVATHDVDLAAEWADQVIVLKEG 214
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-220 |
1.87e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 104.22 E-value: 1.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITN-----PTAGEVLLNGIKISKM-----KS 71
Cdd:PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIFKMdvielRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 EIGYLPQYPNFFHWMTARETLTFMGQLSGL--KKEELSKSIPKMLEKVGLKEEE----NAKVSTFSGGMKQRLGIAQALL 145
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLWDEVkdrlDAPAGKLSGGQQQRLCIARALA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNR 220
Cdd:PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1-217 |
2.19e-26 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 107.04 E-value: 2.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSF------------KG------------KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTA 56
Cdd:PRK10070 3 IKLEIKNLYKIFgehpqrafkyieQGlskeqilektglSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 57 GEVLLNGIKISKM---------KSEIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKV 127
Cdd:PRK10070 83 GQVLIDGVDIAKIsdaelrevrRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 128 STFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN-LIK-EIKKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDeLVKlQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242
|
250
....*....|..
gi 558693083 206 KIEDTTITELLH 217
Cdd:PRK10070 243 VVQVGTPDEILN 254
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
3-219 |
2.37e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 103.85 E-value: 2.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYL 76
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvtldsLRRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHwMTARETLTFmGQLS--------GLKKEELSKSIPKMLE----KVGlkeEENAKVStfsGGMKQRLGIAQAL 144
Cdd:cd03253 81 PQDTVLFN-DTIGYNIRY-GRPDatdeevieAAKAAQIHDKIMRFPDgydtIVG---ERGLKLS---GGEKQRVAIARAI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLStivNADKI----IVLKDGRIVERGTHEELLAKG 226
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-224 |
2.92e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 103.77 E-value: 2.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDIT--NPTA---GEVLLNGIKIS-------KMK 70
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelNEEArveGEVRLFGRNIYspdvdpiEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 SEIGYLPQYPNFFHWMTARETLTFMGQLSGL--KKEELSKSIPKMLEKVGLKEEE----NAKVSTFSGGMKQRLGIAQAL 144
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVkdrlNDYPSNLSGGQRQRLVIARAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIEdTTITELLHRNRENKL 224
Cdd:PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVFENPEHEL 243
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
3-215 |
3.43e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 104.06 E-value: 3.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIA--VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-----KMKSEIGY 75
Cdd:PRK13648 8 IVFKNVSFQYQSDASftLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITddnfeKLRKHIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK13648 88 VFQNPdNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 155 EPVSALDPIGRREVLNLIKEIK--KDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITEL 215
Cdd:PRK13648 168 EATSMLDPDARQNLLDLVRKVKseHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
5-216 |
4.87e-26 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 103.71 E-value: 4.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGYLPQY 79
Cdd:PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSkafarKVAYLPQQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTF--------MGQLSGLKKEELSKSIpkmlEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK10575 94 LPAAEGMTVRELVAIgrypwhgaLGRFGAADREKVEEAI----SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLsqERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1-208 |
4.99e-26 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 102.78 E-value: 4.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK-----------ISKM 69
Cdd:COG4161 1 MSIQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkpsekaIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHWMTARETLTFMG-QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:COG4161 81 RQKVGMVFQQYNLWPHLTVMENLIEAPcKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIKK-DTTILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:COG4161 161 QVLLFDEPTAALDPEITAQVVEIIRELSQtGITQVIVTHEVEFARKVASQVVYMEKGRIIE 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-207 |
6.21e-26 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 106.79 E-value: 6.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM------KSEIGYL 76
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLdhklaaQLGIGII 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLtFMGQLSGLKK--------EELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:PRK09700 86 YQELSVIDELTVLENL-YIGRHLTKKVcgvniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
18-205 |
7.15e-26 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 107.05 E-value: 7.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLPQYPNFFHWmTARETL 92
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDREtfgkhIGYLPQDVELFPG-TVAENI 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 93 TFMGQ------------LSGLkkEELSKSIPKmlekvGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSAL 160
Cdd:TIGR01842 413 ARFGEnadpekiieaakLAGV--HELILRLPD-----GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 161 DPIGRREVLNLIKEIKK-DTTILLSTH---ILSDAEEIcerfVIIKDGT 205
Cdd:TIGR01842 486 DEEGEQALANAIKALKArGITVVVITHrpsLLGCVDKI----LVLQDGR 530
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
17-218 |
8.60e-26 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 102.06 E-value: 8.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP----TAGEVLLNGIKISKMK---SEIGYLPQYP----NFFHW 85
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSirgRHIATIMQNPrtafNPLFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MT--ARETLTFMGQLSGLKKEELSKSipkmLEKVGLKE-EENAKVSTF--SGGMKQRLGIAQALLHKPSLIVMDEPVSAL 160
Cdd:TIGR02770 81 MGnhAIETLRSLGKLSKQARALILEA----LEAVGLPDpEEVLKKYPFqlSGGMLQRVMIALALLLEPPFLIADEPTTDL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 161 DPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:TIGR02770 157 DVVNQARVLKLLRELRQLfgTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
3-162 |
1.20e-25 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 102.12 E-value: 1.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLP 77
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWelarrRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYP--NF-FhwmTARETLTfMGQLSGLKKEELSKSIP-KMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALL-------H 146
Cdd:COG4559 82 QHSslAFpF---TVEEVVA-LGRAPHGSSAAQDRQIVrEALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepvdG 157
|
170
....*....|....*.
gi 558693083 147 KPSLIVMDEPVSALDP 162
Cdd:COG4559 158 GPRWLFLDEPTSALDL 173
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
3-186 |
1.36e-25 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 101.49 E-value: 1.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS--------EI 73
Cdd:PRK10908 2 IRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNrevpflrrQI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
170 180 190
....*....|....*....|....*....|....
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKK-DTTILLSTH 186
Cdd:PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRvGVTVLMATH 195
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-204 |
2.05e-25 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 101.01 E-value: 2.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVN---NFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK-----SEI 73
Cdd:cd03248 11 IVKFQNVTFAYPTRPDTLvlqDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEhkylhSKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHwMTARETLTF-MGQLS-GLKKEELSKS-----IPKMleKVGLKEEENAKVSTFSGGMKQRLGIAQALLH 146
Cdd:cd03248 91 SLVGQEPVLFA-RSLQDNIAYgLQSCSfECVKEAAQKAhahsfISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDG 204
Cdd:cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGG 224
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-218 |
3.56e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 101.32 E-value: 3.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KG----KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE----- 72
Cdd:COG1101 2 LELKNLSKTFnPGtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYkraky 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYP------NffhwMTARETLTfMGQLSGlKKEELSKSIPK--------MLEKVGLKEEE--NAKVSTFSGGMKQ 136
Cdd:COG1101 82 IGRVFQDPmmgtapS----MTIEENLA-LAYRRG-KRRGLRRGLTKkrrelfreLLATLGLGLENrlDTKVGLLSGGQRQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 137 RLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIED----- 209
Cdd:COG1101 156 ALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIveENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILDvsgee 235
|
250
....*....|..
gi 558693083 210 ---TTITELLHR 218
Cdd:COG1101 236 kkkLTVEDLLEL 247
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-208 |
3.96e-25 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 99.88 E-value: 3.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFK--GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIG 74
Cdd:cd03244 2 DIEFKNVSLRYRpnLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIglhdlRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHwMTARETLTFMGQLSglkKEELSKSipkmLEKVGLKEEENAKV-----------STFSGGMKQRLGIAQA 143
Cdd:cd03244 82 IIPQDPVLFS-GTIRSNLDPFGEYS---DEELWQA----LERVGLKEFVESLPggldtvveeggENLSVGQRQLLCLARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTH----ILSdaeeiCERFVIIKDGTKIE 208
Cdd:cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHrldtIID-----SDRILVLDKGRVVE 217
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-207 |
5.41e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 104.24 E-value: 5.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITnPTA---GEVLLNG-------IK------I 66
Cdd:PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGtyeGEIIFEGeelqasnIRdteragI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 67 SKMKSEIGYLPQypnffhwMTARETLtFMGqlsglkkEELSKS-----------IPKMLEKVGLKEEENAKVSTFSGGMK 135
Cdd:PRK13549 85 AIIHQELALVKE-------LSVLENI-FLG-------NEITPGgimdydamylrAQKLLAQLKLDINPATPVGNLGLGQQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 136 QRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKaHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-186 |
6.71e-25 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 103.98 E-value: 6.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG-KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYL 76
Cdd:TIGR02868 335 LELRDLSAGYPGaPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDevrrrVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHwMTARETLTF-MGQLSGlkkEELSKsipkMLEKVGLK---EEENAKVST--------FSGGMKQRLGIAQAL 144
Cdd:TIGR02868 415 AQDAHLFD-TTVRENLRLaRPDATD---EELWA----ALERVGLAdwlRALPDGLDTvlgeggarLSGGERQRLALARAL 486
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTH 186
Cdd:TIGR02868 487 LADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
3-186 |
7.01e-25 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 98.72 E-value: 7.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-------IGY 75
Cdd:PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEyhqdllyLGH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQ-YPNffhwMTARETLTFMGQLSGLKKEElskSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK13538 82 QPGiKTE----LTALENLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154
|
170 180 190
....*....|....*....|....*....|...
gi 558693083 155 EPVSALDPIGRREVLNLIKE-IKKDTTILLSTH 186
Cdd:PRK13538 155 EPFTAIDKQGVARLEALLAQhAEQGGMVILTTH 187
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-208 |
8.17e-25 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 99.70 E-value: 8.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK-----------ISKM 69
Cdd:PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdfsktpsdkaIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHWMTARETLTFMG-QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKP 148
Cdd:PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPcRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIkKDTTI--LLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIREL-AETGItqVIVTHEVEVARKTASRVVYMENGHIVE 221
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-218 |
9.30e-25 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 103.61 E-value: 9.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG----KIAVNNFSMELQAGECVGLIGPNGAGKS----TLIKVISDITNPTAGEVLLNGIKISKMK---- 70
Cdd:COG4172 7 LSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSerel 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 -----SEIGYLPQYPnffhwMTA-----------RETLTFMGqlsGLKKEELSKSIPKMLEKVGLKEEENaKVSTF---- 130
Cdd:COG4172 87 rrirgNRIAMIFQEP-----MTSlnplhtigkqiAEVLRLHR---GLSGAAARARALELLERVGIPDPER-RLDAYphql 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 131 SGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:COG4172 158 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELgmALLLITHDLGVVRRFADRVAVMRQGEIVE 237
|
250
....*....|
gi 558693083 209 DTTITELLHR 218
Cdd:COG4172 238 QGPTAELFAA 247
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
3-205 |
1.25e-24 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 96.36 E-value: 1.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngikISKMKSEIGYLPQypnf 82
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------TWGSTVKIGYFEQ---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 fhwmtaretltfmgqlsglkkeelsksipkmlekvglkeeenakvstFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP 162
Cdd:cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 163 IGRREVLNLIKEIKKdtTILLSTHilsDAE---EICERFVIIKDGT 205
Cdd:cd03221 104 ESIEALEEALKEYPG--TVILVSH---DRYfldQVATKIIELEDGK 144
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-186 |
1.62e-24 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 98.99 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITN--PTAGEVLLNGIKISKMKSE------IG 74
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDILELSPDeraragIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP---------NFFHwmTARETLTfmgqLSGLKKEELSKSIPKMLEKVGLKEE-------ENakvstFSGGMKQRL 138
Cdd:COG0396 81 LAFQYPveipgvsvsNFLR--TALNARR----GEELSAREFLKLLKEKMKELGLDEDfldryvnEG-----FSGGEKKRN 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 139 GIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTH 186
Cdd:COG0396 150 EILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRsPDRGILIITH 198
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-248 |
5.23e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 98.63 E-value: 5.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNF---SMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-----KMKSEIG 74
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQLngvSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTaenvwNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK13642 85 MVFQNPdNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLhrnrenkliieitAK 231
Cdd:PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKyqLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELF-------------AT 230
|
250
....*....|....*..
gi 558693083 232 DQNWIEVVKKLPYVKNV 248
Cdd:PRK13642 231 SEDMVEIGLDVPFSSNL 247
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
3-192 |
5.60e-24 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 96.41 E-value: 5.60e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK----SEIGYLPQ 78
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRdsiaRGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGlkkeelSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:cd03231 81 APGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 558693083 159 ALDPIGRREVLNLIK-EIKKDTTILLSTHI-LSDAE 192
Cdd:cd03231 155 ALDKAGVARFAEAMAgHCARGGMVVLTTHQdLGLSE 190
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-208 |
5.72e-24 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 101.30 E-value: 5.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK-----------IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDItNPTAGEVLLNGIKISKMKS 71
Cdd:COG4172 276 LEARDLKVWFPIKrglfrrtvghvKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGQDLDGLSR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 72 E----------------IGYL-PQypnffhwMTARETLT--FMGQLSGLKKEELSKSIPKMLEKVGLKEE-------Ena 125
Cdd:COG4172 355 RalrplrrrmqvvfqdpFGSLsPR-------MTVGQIIAegLRVHGPGLSAAERRARVAEALEEVGLDPAarhryphE-- 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 126 kvstFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKD 203
Cdd:COG4172 426 ----FSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLqrEHGLAYLFISHDLAVVRALAHRVMVMKD 501
|
....*
gi 558693083 204 GTKIE 208
Cdd:COG4172 502 GKVVE 506
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-216 |
6.32e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 97.81 E-value: 6.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKV------ISDITNPTAGEVLLNG-----IKISKMKSEIGYLPQYPNFF 83
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVlnrlieIYDSKIKVDGKVLYFGkdifqIDAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 HWMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEEE----NAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKeKREIKKIVEECLRKVGLWKEVydrlNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 159 ALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
3-218 |
6.53e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 97.95 E-value: 6.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYL 76
Cdd:PRK13652 4 IETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKenireVRKFVGLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLS-GLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHR 218
Cdd:PRK13652 164 PTAGLDPQGVKELIDFLNDLPETygMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-186 |
7.17e-24 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 101.04 E-value: 7.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVT-KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGikiskmKSEIGYLPQYPn 81
Cdd:COG4178 363 LALEDLTlRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPA------GARVLFLPQRP- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 82 FFHWMTARETLTFMGQLSGLKKEELSKsipkMLEKVGLK------EEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:COG4178 436 YLPLGTLREALLYPATAEAFSDAELRE----ALEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDE 511
|
170 180 190
....*....|....*....|....*....|.
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKDTTILLSTH 186
Cdd:COG4178 512 ATSALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-191 |
8.08e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 97.55 E-value: 8.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITN--PTA---GEVLLNGIKI-------SKM 69
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDliPGFrveGKVTFHGKNLyapdvdpVEV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHwMTARETLTFMGQLSGLKKEeLSKSIPKMLEKVGLKEEENAKV----STFSGGMKQRLGIAQALL 145
Cdd:PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGD-MDELVERSLRQAALWDEVKDKLkqsgLSLSGGQQQRLCIARAIA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDA 191
Cdd:PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA 213
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-186 |
1.49e-23 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 100.51 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDiTNPT----AGEVLLNGIKI--SKMKSEIGYLPQYPNFFHWMTA 88
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF-RSPKgvkgSGSVLLNGMPIdaKEMRAISAYVQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 89 RETLTFMGQL---SGLKKEELSKSIPKMLEKVGLKEEENAKVST------FSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:TIGR00955 117 REHLMFQAHLrmpRRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSG 196
|
170 180
....*....|....*....|....*...
gi 558693083 160 LDPIGRREVLNLIKEI-KKDTTILLSTH 186
Cdd:TIGR00955 197 LDSFMAYSVVQVLKGLaQKGKTIICTIH 224
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
3-208 |
1.52e-23 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 98.26 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK---GKI-AVNNFSMELQAGECVGLIGPNGAGKS----TLIKVISDiTNPTAGEVLLNGIKI-------- 66
Cdd:PRK09473 13 LDVKDLRVTFStpdGDVtAVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLAA-NGRIGGSATFNGREIlnlpekel 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 67 SKMKSE-IGYLPQYP--NFFHWMTARETLTFMGQL-SGLKKEELSKSIPKMLEKVGLKEEE---NAKVSTFSGGMKQRLG 139
Cdd:PRK09473 92 NKLRAEqISMIFQDPmtSLNPYMRVGEQLMEVLMLhKGMSKAEAFEESVRMLDAVKMPEARkrmKMYPHEFSGGMRQRVM 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 140 IAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITHDLGVVAGICDKVLVMYAGRTME 242
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
2-208 |
1.70e-23 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 96.41 E-value: 1.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFkGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS------------- 67
Cdd:COG4598 8 ALEVRDLHKSF-GDLEVlKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgelvpad 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 68 -----KMKSEIGYLPQypNFFHW--MTARETLTFMG-QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLG 139
Cdd:COG4598 87 rrqlqRIRTRLGMVFQ--SFNLWshMTVLENVIEAPvHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 140 IAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGtKIE 208
Cdd:COG4598 165 IARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEgRTMLVVTHEMGFARDVSSHVVFLHQG-RIE 233
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-194 |
1.75e-23 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 95.94 E-value: 1.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLP 77
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEiyrqqVSYCA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHwMTARETLTFMGQLSGLKKEElsKSIPKMLEKVGLKEEENAK-VSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:PRK10247 88 QTPTLFG-DTVYDNLIFPWQIRNQQPDP--AIFLDDLERFALPDTILTKnIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 558693083 157 VSALDPIGRREVLNLIKEIKKDTTI--LLSTHilsDAEEI 194
Cdd:PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIavLWVTH---DKDEI 201
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-194 |
1.79e-23 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 97.73 E-value: 1.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK--------MKSEIGYLPQYPnfFHWMTA 88
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKadpeaqklLRQKIQIVFQNP--YGSLNP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 89 RETLtfmGQL--------SGLKKEELSKSIPKMLEKVGLKEEENAKVS-TFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:PRK11308 108 RKKV---GQIleepllinTSLSAAERREKALAMMAKVGLRPEHYDRYPhMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 160 LDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEI 194
Cdd:PRK11308 185 LDVSVQAQVLNLMMDLQQElgLSYVFISHDLSVVEHI 221
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
3-211 |
1.89e-23 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 95.96 E-value: 1.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK---GKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMkSE------ 72
Cdd:COG4181 9 IELRGLTKTVGtgaGELTIlKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAL-DEdararl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 ----IGYLPQYpnfFHW---MTARETLTFMGQLSGLKK-EELSKsipKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQAL 144
Cdd:COG4181 88 rarhVGFVFQS---FQLlptLTALENVMLPLELAGRRDaRARAR---ALLERVGLGHRLDHYPAQLSGGEQQRVALARAF 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEiCERFVIIKDGTKIEDTT 211
Cdd:COG4181 162 ATEPAILFADEPTGNLDAATGEQIIDLLFELNRErgTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTA 229
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-219 |
2.68e-23 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 99.41 E-value: 2.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIG 74
Cdd:TIGR02203 330 DVEFRNVTFRYPGrdRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADytlasLRRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHwMTARETLTFmGQLSGLKKEELSKSI--PKMLEKV-----GLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:TIGR02203 410 LVSQDVVLFN-DTIANNIAY-GRTEQADRAEIERALaaAYAQDFVdklplGLDTPIGENGVLLSGGQRQRLAIARALLKD 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRN 219
Cdd:TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERGTHNELLARN 558
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
3-215 |
3.66e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 96.02 E-value: 3.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG--KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGE---VLLNGIKISK-----MKSE 72
Cdd:PRK13640 6 VEFKHVSFTYPDskKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAktvwdIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYP-NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK13640 86 VGIVFQNPdNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAeEICERFVIIKDGTKIEDTTITEL 215
Cdd:PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKKNnlTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEI 230
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-185 |
4.45e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 99.04 E-value: 4.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEV-LLNGikisKMKSE---------I 73
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVeVLGG----DMADArhrravcprI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQ------YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:NF033858 79 AYMPQglgknlYPT----LSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHD 154
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKEIKKDT---TILLST 185
Cdd:NF033858 155 PDLLILDEPTTGVDPLSRRQFWELIDRIRAERpgmSVLVAT 195
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
3-210 |
8.38e-23 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 94.18 E-value: 8.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFkGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK------MKSEIGY 75
Cdd:PRK11614 6 LSFDKVSAHY-GKIqALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwqtakiMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTFMGQLSglKKEELSKSIPKMLEKVG-LKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG-TKIEDT 210
Cdd:PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQgMTIFLVEQNANQALKLADRGYVLENGhVVLEDT 220
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-209 |
8.65e-23 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 94.65 E-value: 8.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEIGYLP---- 77
Cdd:PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKvadk 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 --------------QYPNFFHWMTARETLTFMG-QLSGLKKEELSKSIPKMLEKVGLKEEENAKVST-FSGGMKQRLGIA 141
Cdd:PRK10619 85 nqlrllrtrltmvfQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVhLSGGQQQRVSIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGtKIED 209
Cdd:PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSSHVIFLHQG-KIEE 232
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
3-219 |
8.89e-23 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 94.09 E-value: 8.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK--GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGY 75
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALadpawLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHwMTARETLTFMGQLSGLKK-EELSKS------IPKMLEKVGLKEEENAkvSTFSGGMKQRLGIAQALLHKP 148
Cdd:cd03252 81 VLQENVLFN-RSIRDNIALADPGMSMERvIEAAKLagahdfISELPEGYDTIVGEQG--AGLSGGQRQRIAIARALIHNP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRN 219
Cdd:cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAEN 227
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
5-188 |
8.93e-23 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 94.41 E-value: 8.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGikiskmKSEIGYLPQYPNffh 84
Cdd:PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------KLRIGYVPQKLY--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 85 wMTARETLT---FMGQLSGLKKEElsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PRK09544 78 -LDTTLPLTvnrFLRLRPGTKKED----ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
170 180
....*....|....*....|....*....
gi 558693083 162 PIGRREVLNLIKEIKK--DTTILLSTHIL 188
Cdd:PRK09544 153 VNGQVALYDLIDQLRRelDCAVLMVSHDL 181
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-194 |
1.42e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 92.63 E-value: 1.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISKMKSEIGYL-P 77
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGgdIDDPDVAEACHYLgH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QypNFFH-WMTARETLTFMGQLSGlkKEELskSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEP 156
Cdd:PRK13539 81 R--NAMKpALTVAENLEFWAAFLG--GEEL--DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 558693083 157 VSALDPIGRREVLNLIKE-IKKDTTILLSTHI---LSDAEEI 194
Cdd:PRK13539 155 TAALDAAAVALFAELIRAhLAQGGIVIAATHIplgLPGAREL 196
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
3-225 |
1.60e-22 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 97.00 E-value: 1.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAG-------EVLLNGIK------ISKM 69
Cdd:PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGsilylgkEVTFNGPKssqeagIGII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYP---NFFhwmTAREtltFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLH 146
Cdd:PRK10762 85 HQELNLIPQLTiaeNIF---LGRE---FVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELlhrnRENKLI 225
Cdd:PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKsQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL----TEDSLI 234
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
3-219 |
2.02e-22 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 97.12 E-value: 2.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYL 76
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDidrhtLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFH-------WMTARETLTFMGQLSGLKKEELSKSIPKMleKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:TIGR01193 554 PQEPYIFSgsilenlLLGAKENVSQDEIWAACEIAEIKDDIENM--PLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEIkKDTTILLSTHILSDAEEIcERFVIIKDGTKIEDTTITELLHRN 219
Cdd:TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLDRN 699
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-209 |
2.66e-22 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 96.72 E-value: 2.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF---KGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------ 72
Cdd:PRK10535 5 LELKDIRRSYpsgEEQVEVlKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADalaqlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 ---IGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:PRK10535 85 rehFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTH---ILSDAEEICErfviIKDGTKIED 209
Cdd:PRK10535 165 VILADEPTGALDSHSGEEVMAILHQLRdRGHTVIIVTHdpqVAAQAERVIE----IRDGEIVRN 224
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-218 |
4.40e-22 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 96.33 E-value: 4.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAV---NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEI 73
Cdd:TIGR00958 478 LIEFQDVSFSYPNRPDVpvlKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQydhhyLHRQV 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 GYLPQYPNFFHwMTARETLTF------MGQLSGLKKEELSKSIPKMLEKvGLKEEENAKVSTFSGGMKQRLGIAQALLHK 147
Cdd:TIGR00958 558 ALVGQEPVLFS-GSVRENIAYgltdtpDEEIMAAAKAANAHDFIMEFPN-GYDTEVGEKGSQLSGGQKQRIAIARALVRK 635
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 148 PSLIVMDEPVSALDPIGRREVLNLIKeiKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHR 218
Cdd:TIGR00958 636 PRVLILDEATSALDAECEQLLQESRS--RASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-215 |
4.82e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 96.07 E-value: 4.82e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKN-VTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITnPTAGEVLLNGIKISKM-----KSEIGYL 76
Cdd:PRK11174 350 IEAEDlEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELdpeswRKHLSWV 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHwMTARETLTfmgqlsgLKKEELSKS-IPKMLEKVGLKE--------------EENAKVStfsGGMKQRLGIA 141
Cdd:PRK11174 429 GQNPQLPH-GTLRDNVL-------LGNPDASDEqLQQALENAWVSEflpllpqgldtpigDQAAGLS---VGQAQRLALA 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITEL 215
Cdd:PRK11174 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAEL 570
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-216 |
5.29e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 92.85 E-value: 5.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 7 NVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAG-----EVLLNGIKIS------KMKSEIGY 75
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFnyrdvlEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVST----FSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK14271 106 LFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-204 |
5.37e-22 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 94.91 E-value: 5.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKS-----EIGY 75
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAraasrRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARETLTfMGQLSGLKK-----EELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVE-MGRTPHRSRfdtwtETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDgKTAVAAIHDLDLAARYCDELVLLADG 215
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-218 |
6.10e-22 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 95.28 E-value: 6.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDI--TNPTAGEVLLNG--IKISKMKSE----IG 74
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGspLKASNIRDTeragIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLtFMGQ---LSG--LKKEELSKSIPKMLEKVGLKEEENAK-VSTFSGGMKQRLGIAQALLHKP 148
Cdd:TIGR02633 82 IIHQELTLVPELSVAENI-FLGNeitLPGgrMAYNAMYLRAKNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 149 SLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTHILSDAEEICERFVIIKDGTKI---------EDTTITELLHR 218
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKaHGVACVYISHKLNEVKAVCDTICVIRDGQHVatkdmstmsEDDIITMMVGR 240
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1-215 |
7.32e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 92.54 E-value: 7.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSF-KG----KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------- 67
Cdd:PRK13646 1 MTIRFDNVSYTYqKGtpyeHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThktkdkyi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 68 -KMKSEIGYLPQYP--NFFHWMTARETLtFMGQLSGLKKEELSKSIPKMLEKVGLkEEENAKVSTF--SGGMKQRLGIAQ 142
Cdd:PRK13646 81 rPVRKRIGMVFQFPesQLFEDTVEREII-FGPKNFKMNLDEVKNYAHRLLMDLGF-SRDVMSQSPFqmSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 143 ALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLqtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-216 |
7.52e-22 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 92.16 E-value: 7.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKI---------AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS----KM 69
Cdd:PRK15112 5 LEVRNLSKTFRYRTgwfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSE-IGYLPQYPNffhwmTARETLTFMGQL--------SGLKKEELSKSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLG 139
Cdd:PRK15112 85 RSQrIRMIFQDPS-----TSLNPRQRISQIldfplrlnTDLEPEQREKQIIETLRQVGLLPDHaSYYPHMLAPGQKQRLG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 140 IAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELqeKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
15-205 |
8.37e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 92.78 E-value: 8.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAG------EVLLNGIKISKMKS---EIGYLPQYPNffHW 85
Cdd:PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGtvtigeRVITAGKKNKKLKPlrkKVGIVFQFPE--HQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 M---TARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKvSTF--SGGMKQRLGIAQALLHKPSLIVMDEPVSAL 160
Cdd:PRK13634 98 LfeeTVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR-SPFelSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 558693083 161 DPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:PRK13634 177 DPKGRKEMMEMFYKLhkEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
3-208 |
9.45e-22 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 91.82 E-value: 9.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEV--------LLNGIKISK------ 68
Cdd:TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAtyimrsgaELELYQLSEaerrrl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 69 MKSEIGYLPQYPNFFHWMTAR------ETLTFMGQLsglKKEELSKSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLGIA 141
Cdd:TIGR02323 84 MRTEWGFVHQNPRDGLRMRVSaganigERLMAIGAR---HYGNIRATAQDWLEEVEIDPTRiDDLPRAFSGGMQQRLQIA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTI--LLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLavIIVTHDLGVARLLAQRLLVMQQGRVVE 229
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
3-215 |
9.65e-22 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 93.65 E-value: 9.65e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLiKVISDITNPTAGE----VLLNGIKISKMKSEIG-YLP 77
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRrpwrF*TWCANRRALRRTIG*HRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:NF000106 93 VR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 158 SALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRDgATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-197 |
1.19e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 94.81 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS----KMKSEIGYLPQY 79
Cdd:NF033858 268 EARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDagdiATRRRVGYMSQA 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:NF033858 348 FSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSG 427
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 558693083 160 LDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEiCER 197
Cdd:NF033858 428 VDPVARDMFWRLLIELsrEDGVTIFISTHFMNEAER-CDR 466
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
4-162 |
1.50e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 90.91 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLPQ 78
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRelakrLAILRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTF------MGQLSglkkEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIV 152
Cdd:COG4604 83 ENHINSRLTVRELVAFgrfpysKGRLT----AEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVL 158
|
170
....*....|
gi 558693083 153 MDEPVSALDP 162
Cdd:COG4604 159 LDEPLNNLDM 168
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
17-217 |
1.59e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 91.72 E-value: 1.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI---------KISKMKSEIGYLPQYP--NFFHw 85
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIvvsstskqkEIKPVRKKVGVVFQFPesQLFE- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVS-TFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIG 164
Cdd:PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 558693083 165 RREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLH 217
Cdd:PRK13643 180 RIEMMQLFESIHQSgQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-214 |
2.30e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 93.71 E-value: 2.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF----KGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLL----NGIKISK----- 68
Cdd:TIGR03269 280 IKVRNVSKRYisvdRGVVkAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKpgpdg 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 69 ---MKSEIGYLPQYPNFFHWMTARETLTfmgQLSGLkkeELSKSIPKM-----LEKVGLKEEENAKV-----STFSGGMK 135
Cdd:TIGR03269 360 rgrAKRYIGILHQEYDLYPHRTVLDNLT---EAIGL---ELPDELARMkavitLKMVGFDEEKAEEIldkypDELSEGER 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 136 QRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGtKIEDTTIT 213
Cdd:TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmeQTFIIVSHDMDFVLDVCDRAALMRDG-KIVKIGDP 512
|
.
gi 558693083 214 E 214
Cdd:TIGR03269 513 E 513
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1-207 |
2.41e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 91.34 E-value: 2.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKS------FKGKiAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI---SKMK- 70
Cdd:PRK13649 1 MGINLQNVSYTyqagtpFEGR-ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItstSKNKd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 -----SEIGYLPQYP--NFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKvSTF--SGGMKQRLGIA 141
Cdd:PRK13649 80 ikqirKKVGLVFQFPesQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK-NPFelSGGQMRRVAIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICErFVIIKDGTKI 207
Cdd:PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSgMTIVLVTHLMDDVANYAD-FVYVLEKGKL 223
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
3-204 |
2.60e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 91.20 E-value: 2.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI------KISKMKSEIGY 75
Cdd:PRK13644 2 IRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgdfsKLQGIRKLVGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNF-FHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK13644 82 VFQNPETqFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 155 EPVSALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAeEICERFVIIKDG 204
Cdd:PRK13644 162 EVTSMLDPDSGIAVLERIKKLhEKGKTIVYITHNLEEL-HDADRIIVMDRG 211
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1-237 |
4.51e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 90.66 E-value: 4.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVTKSFK-----GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-------- 67
Cdd:PRK13641 1 MSIKFENVDYIYSpgtpmEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnknl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 68 -KMKSEIGYLPQYP--NFFHwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKvSTF--SGGMKQRLGIAQ 142
Cdd:PRK13641 81 kKLRKKVSLVFQFPeaQLFE-NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-SPFelSGGQMRRVAIAG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 143 ALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT-TILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLhrnre 221
Cdd:PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGhTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF----- 233
|
250
....*....|....*.
gi 558693083 222 nkliieitaKDQNWIE 237
Cdd:PRK13641 234 ---------SDKEWLK 240
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
3-205 |
5.02e-21 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 92.81 E-value: 5.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK----SEIG-YL- 76
Cdd:PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTpakaHQLGiYLv 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFmgqlsGL-KKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:PRK15439 92 PQEPLLFPNLSVKENILF-----GLpKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 558693083 156 PVSALDPIgrrEVLNLIKEIK----KDTTILLSTHILSDAEEICERFVIIKDGT 205
Cdd:PRK15439 167 PTASLTPA---ETERLFSRIRellaQGVGIVFISHKLPEIRQLADRISVMRDGT 217
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
3-186 |
6.01e-21 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 89.24 E-value: 6.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS--DITNPTAGEVLLNGIKISKMKSE------IG 74
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAghPSYEVTSGTILFKGQDLLELEPDeraragLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP---------NFFHwmTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEE-ENAKVST-FSGGMKQRLGIAQA 143
Cdd:TIGR01978 81 LAFQYPeeipgvsnlEFLR--SALNARRSARGEEPLDLLDFEKLLKEKLALLDMDEEfLNRSVNEgFSGGEKKRNEILQM 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTH 186
Cdd:TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLRePDRSFLIITH 202
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-224 |
9.30e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 89.33 E-value: 9.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDItNPTAGEVLLNG-------------IKISKM 69
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEVRVEGrveffnqniyerrVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHwMTARETLTFMGQLSGLK-KEELSKSIPKMLEKVGLKEEENAKVST----FSGGMKQRLGIAQAL 144
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRpKLEIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIARAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIK--EIKKDTTILLSTHILSDAEEICERFVIIKDgtkiEDTTITELLHRNREN 222
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQslRLRSELTMVIVSHNLHQVSRLSDFTAFFKG----NENRIGQLVEFGLTK 241
|
..
gi 558693083 223 KL 224
Cdd:PRK14258 242 KI 243
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-219 |
9.44e-21 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 91.95 E-value: 9.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLP 77
Cdd:PRK13657 336 EFDDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAslrrnIAVVF 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPNFFHWMTA------RETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAkvSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK13657 416 QDAGLFNRSIEdnirvgRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG--RQLSGGERQRLAIARALLKDPPIL 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLStvrNADRI----LVFDNGRVVESGSFDELVARG 560
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-208 |
9.67e-21 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 92.23 E-value: 9.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI-----SKMKS---EIGYLPQYPnfFHWMTA 88
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlspGKLQAlrrDIQFIFQDP--YASLDP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 89 RET--------LTFMGQLSGlkkEELSKSIPKMLEKVGLKEEENAKVS-TFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:PRK10261 417 RQTvgdsimepLRVHGLLPG---KAAAARVAWLLERVGLLPEHAWRYPhEFSGGQRQRICIARALALNPKVIIADEAVSA 493
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 160 LDPIGRREVLNLIKEIKKDTTI--LLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK10261 494 LDVSIRGQIINLLLDLQRDFGIayLFISHDMAVVERISHRVAVMYLGQIVE 544
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
3-205 |
1.51e-20 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 87.14 E-value: 1.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNF-----SMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGikiskmksEIGYLP 77
Cdd:cd03250 1 ISVEDASFTWDSGEQETSFtlkdiNLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------SIAYVS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QYPnffhW---MTARETLTFmgqLSGLKKEELSKSIP--------KMLEKvGLKEEENAKVSTFSGGMKQRLGIAQALLH 146
Cdd:cd03250 73 QEP----WiqnGTIRENILF---GKPFDEERYEKVIKacalepdlEILPD-GDLTEIGEKGINLSGGQKQRISLARAVYS 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 147 KPSLIVMDEPVSALDP-IGRREVLNLI-KEIKKDTTILLSTHILSDAEEiCERFVIIKDGT 205
Cdd:cd03250 145 DADIYLLDDPLSAVDAhVGRHIFENCIlGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-204 |
2.86e-20 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 88.12 E-value: 2.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYL 76
Cdd:PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKevarrIGLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTAREtLTFMGQ------LSGLKKEElSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:PRK10253 87 AQNATTPGDITVQE-LVARGRyphqplFTRWRKED-EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSThILSDAEEICE---RFVIIKDG 204
Cdd:PRK10253 165 MLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA-VLHDLNQACRyasHLIALREG 220
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
3-219 |
4.21e-20 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 90.08 E-value: 4.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK--IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI-----KISKMKSEIGY 75
Cdd:PRK11176 342 IEFRNVTFTYPGKevPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHdlrdyTLASLRNQVAL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYPNFFHWMTARE-TLTFMGQLSglkKEELSKS---------IPKMleKVGLKEE--ENAkvSTFSGGMKQRLGIAQA 143
Cdd:PRK11176 422 VSQNVHLFNDTIANNiAYARTEQYS---REQIEEAarmayamdfINKM--DNGLDTVigENG--VLLSGGQRQRIAIARA 494
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLStieKADEI----LVVEDGEIVERGTHAELLAQN 569
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
3-184 |
4.95e-20 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 89.95 E-value: 4.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngiKISKmKSEIGYLPQ--YP 80
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-----KWSE-NANIGYYAQdhAY 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NFFHWMTAREtltFMGQLSGLKKEELskSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSA 159
Cdd:PRK15064 394 DFENDLTLFD---WMSQWRQEGDDEQ--AVRGTLGRLLFSQDDiKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468
|
170 180
....*....|....*....|....*..
gi 558693083 160 LD--PIgrrEVLNLIKEIKKDTTILLS 184
Cdd:PRK15064 469 MDmeSI---ESLNMALEKYEGTLIFVS 492
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
5-213 |
6.00e-20 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 87.25 E-value: 6.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFK-GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM--KSEIGYLPQ--- 78
Cdd:PRK15056 9 VNDVTVTWRnGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAlqKNLVAYVPQsee 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 ----YPNFFHWMTARETLTFMGQLSGLKKEElSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK15056 89 vdwsFPVLVEDVVMMGRYGHMGWLRRAKKRD-RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKdGTKI----EDTTIT 213
Cdd:PRK15056 168 EPFTGVDVKTEARIISLLRELRDEgKTMLVSTHNLGSVTEFCDYTVMVK-GTVLasgpTETTFT 230
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
3-186 |
7.29e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 85.27 E-value: 7.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDI--TNPTAGEVLLNGIKISKMKSE------IG 74
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEerarlgIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNffhwmtaretltfmgQLSGLKKEELSKSIpkmleKVGlkeeenakvstFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03217 81 LAFQYPP---------------EIPGVKNADFLRYV-----NEG-----------FSGGEKKRNEILQLLLLEPDLAILD 129
|
170 180 190
....*....|....*....|....*....|...
gi 558693083 155 EPVSALDPIGRREVLNLIKEIK-KDTTILLSTH 186
Cdd:cd03217 130 EPDSGLDIDALRLVAEVINKLReEGKSVLIITH 162
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-220 |
1.02e-19 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 86.29 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIaVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP----TAGEVLLNGIKISKMK---SEIG 74
Cdd:PRK10418 4 QIELRNIALQAAQPL-VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCAlrgRKIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP----NFFHWMT--ARETLTFMGQLSGLKkeelskSIPKMLEKVGLKEEEN-AKVSTF--SGGMKQRLGIAQALL 145
Cdd:PRK10418 83 TIMQNPrsafNPLHTMHthARETCLALGKPADDA------TLTAALEAVGLENAARvLKLYPFemSGGMLQRMMIALALL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 146 HKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNR 220
Cdd:PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIvqKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
5-186 |
1.14e-19 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 89.17 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISD--ITNPTAGEVLLNGIKISK--MKsEIGYLPQYP 80
Cdd:PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGriQGNNFTGTILANNRKPTKqiLK-RTGFVTQDD 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NFFHWMTARETLTFMGQL---SGLKKEELSKSIPKMLEKVGLKEEENAKV-STF----SGGMKQRLGIAQALLHKPSLIV 152
Cdd:PLN03211 150 ILYPHLTVRETLVFCSLLrlpKSLTKQEKILVAESVISELGLTKCENTIIgNSFirgiSGGERKRVSIAHEMLINPSLLI 229
|
170 180 190
....*....|....*....|....*....|....*
gi 558693083 153 MDEPVSALDPIGR-REVLNLIKEIKKDTTILLSTH 186
Cdd:PLN03211 230 LDEPTSGLDATAAyRLVLTLGSLAQKGKTIVTSMH 264
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-214 |
1.74e-19 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 88.31 E-value: 1.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDItNPTA---GEVLLNGiKISKMK----SE--- 72
Cdd:NF040905 2 LEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGV-YPHGsyeGEILFDG-EVCRFKdirdSEalg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 ----------IGYLPQYPNFF-----------HWmtaRETLTfmgqlsglKKEELsksipkmLEKVGLKEEENAKVSTFS 131
Cdd:NF040905 80 iviihqelalIPYLSIAENIFlgnerakrgviDW---NETNR--------RAREL-------LAKVGLDESPDTLVTDIG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 132 GGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLStHILSDAEEICERFVIIKDGTKIE- 208
Cdd:NF040905 142 VGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQgiTSIIIS-HKLNEIRRVADSITVLRDGRTIEt 220
|
250
....*....|
gi 558693083 209 ----DTTITE 214
Cdd:NF040905 221 ldcrADEVTE 230
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
3-208 |
1.93e-19 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 85.36 E-value: 1.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEV--------LLNGIKISK------ 68
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhyrmrdgqLRDLYALSEaerrrl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 69 MKSEIGYLPQYPnffhwmtaRETLTfMGQLSGLKKEE------------LSKSIPKMLEKVglkEEENAKV----STFSG 132
Cdd:PRK11701 87 LRTEWGFVHQHP--------RDGLR-MQVSAGGNIGErlmavgarhygdIRATAGDWLERV---EIDAARIddlpTTFSG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 133 GMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT--TILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELglAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-208 |
1.97e-19 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 88.22 E-value: 1.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF---KG--------KIAVNNFSMELQAGECVGLIGPNGAGKST----LIKVIsditnPTAGEVLLNGIKIS 67
Cdd:PRK15134 276 LDVEQLQVAFpirKGilkrtvdhNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLH 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 68 KM--------KSEIGYLPQYPNffHWMTAR--------ETLTF-MGQLSGLKKEElskSIPKMLEKVGLKEEENAKV-ST 129
Cdd:PRK15134 351 NLnrrqllpvRHRIQVVFQDPN--SSLNPRlnvlqiieEGLRVhQPTLSAAQREQ---QVIAVMEEVGLDPETRHRYpAE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 130 FSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTI--LLSTHILSDAEEICERFVIIKDGTKI 207
Cdd:PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLayLFISHDLHVVRALCHQVIVLRQGEVV 505
|
.
gi 558693083 208 E 208
Cdd:PRK15134 506 E 506
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
5-207 |
2.73e-19 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 86.62 E-value: 2.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIK---ISKMKSEIGYLPQ--- 78
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRmndVPPAERGVGMVFQsya 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 -YPNffhwMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPV 157
Cdd:PRK11000 86 lYPH----LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 558693083 158 SALDPI----GRREVLNLIKEIKKdtTILLSTHILSDAEEICERFVIIkDGTKI 207
Cdd:PRK11000 162 SNLDAAlrvqMRIEISRLHKRLGR--TMIYVTHDQVEAMTLADKIVVL-DAGRV 212
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-204 |
2.84e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 83.25 E-value: 2.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTksfkGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK------MKSEIGYL 76
Cdd:cd03215 5 LEVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRrsprdaIRAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPnffhwmtaRETLTFMGQlsglkkeelskSIpkmlekvglkeEENAKVSTF-SGGMKQRLGIAQALLHKPSLIVMDE 155
Cdd:cd03215 81 PEDR--------KREGLVLDL-----------SV-----------AENIALSSLlSGGNQQKVVLARWLARDPRVLILDE 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 558693083 156 PVSALDPIGRREVLNLIKEIKKD-TTILLsthILSDAEEI---CERFVIIKDG 204
Cdd:cd03215 131 PTRGVDVGAKAEIYRLIRELADAgKAVLL---ISSELDELlglCDRILVMYEG 180
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-208 |
3.89e-19 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 83.62 E-value: 3.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKI--AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIG 74
Cdd:cd03369 6 EIEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTipledLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWmTARETLTFMGQLSglkKEELSKSipkmlekvgLKEEENAkvSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:cd03369 86 IIPQDPTLFSG-TIRSNLDPFDEYS---DEEIYGA---------LRVSEGG--LNLSQGQRQLLCLARALLKRPRVLVLD 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 558693083 155 EPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIE 208
Cdd:cd03369 151 EATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-204 |
4.09e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 86.08 E-value: 4.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 35 GPNGAGKSTLIKVISDITNPTAGEVLLN---------GIKISKMKSEIGYLPQYPNFFHWMTARETLTFmgqlsGLKKEE 105
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRPQKGRIVLNgrvlfdaekGICLPPEKRRIGYVFQDARLFPHYKVRGNLRY-----GMAKSM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 106 LSK--SIPKMLekvGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN----LIKEIKkdT 179
Cdd:PRK11144 106 VAQfdKIVALL---GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPylerLAREIN--I 180
|
170 180
....*....|....*....|....*...
gi 558693083 180 TILLSTHILsdaEEI---CERFVIIKDG 204
Cdd:PRK11144 181 PILYVSHSL---DEIlrlADRVVVLEQG 205
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
19-219 |
6.11e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 86.80 E-value: 6.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 19 NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE-----IGYLPQypnffhwmtarETLT 93
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQAslraaIGIVPQ-----------DTVL 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 94 F-------------------------MGQLsglkkEELSKSIPKMLEKV----GLKeeenakvstFSGGMKQRLGIAQAL 144
Cdd:COG5265 444 FndtiayniaygrpdaseeeveaaarAAQI-----HDFIESLPDGYDTRvgerGLK---------LSGGEKQRVAIARTL 509
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 145 LHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITELLHRN 219
Cdd:COG5265 510 LKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLVIAHRLStivDADEI----LVLEAGRIVERGTHAELLAQG 583
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-221 |
6.12e-19 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 86.87 E-value: 6.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllnGIKISKMKSEIGylpqyPNFFHWMTARETLTFMG 96
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV---DIKGSAALIAIS-----SGLNGQLTGIENIELKG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK 176
Cdd:PRK13545 111 LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 177 -KDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRE 221
Cdd:PRK13545 191 eQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
5-208 |
7.08e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 84.67 E-value: 7.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKI-----AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----------SKM 69
Cdd:PRK13645 9 LDNVSYTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpanlkkikevKRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 70 KSEIGYLPQYPNFFHWMTARETLTFMGQLS-GLKKEELSKSIPKMLEKVGLKEEEnAKVSTF--SGGMKQRLGIAQALLH 146
Cdd:PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNlGENKQEAYKKVPELLKLVQLPEDY-VKRSPFelSGGQKRRVALAGIIAM 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 147 KPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIE 208
Cdd:PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEykKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
18-207 |
2.03e-18 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 81.54 E-value: 2.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTA---GEVLLNGIKISKMKS----EIGYLPQYPNFFHWMTARE 90
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPYKEFAEkypgEIIYVSEEDVHFPTLTVRE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 91 TLTFMGQLSGlkkeelsksipkmlekvglkeeeNAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIgrrEVLN 170
Cdd:cd03233 103 TLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS---TALE 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 558693083 171 LIKEIKKDTTILLSTHILS---DAEEICERF---VIIKDGTKI 207
Cdd:cd03233 157 ILKCIRTMADVLKTTTFVSlyqASDEIYDLFdkvLVLYEGRQI 199
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-217 |
3.05e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 84.76 E-value: 3.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKG----KIAVNNFSMELQAGECVGLIGPNGAGKS-TLIKVISDITNP----TAGEVLLNG---IKISKMK 70
Cdd:PRK15134 6 LAIENLSVAFRQqqtvRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGeslLHASEQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 ------SEIGYLPQYPnffhwMTARETL-TFMGQLS-------GLKKEELSKSIPKMLEKVGLKEEENaKVSTF----SG 132
Cdd:PRK15134 86 lrgvrgNKIAMIFQEP-----MVSLNPLhTLEKQLYevlslhrGMRREAARGEILNCLDRVGIRQAAK-RLTDYphqlSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 133 GMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDT 210
Cdd:PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239
|
....*..
gi 558693083 211 TITELLH 217
Cdd:PRK15134 240 RAATLFS 246
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
3-207 |
6.69e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 82.21 E-value: 6.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGK-----IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS---------- 67
Cdd:PRK13631 22 LRVKNLYCVFDEKqenelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGdkknnhelit 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 68 -----------KMKSEIGYLPQYPNFFHWMTARETLTFMGQLS-GLKKEELSKSIPKMLEKVGLKEEeNAKVSTF--SGG 133
Cdd:PRK13631 102 npyskkiknfkELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAlGVKKSEAKKLAKFYLNKMGLDDS-YLERSPFglSGG 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 134 MKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDT-TILLSTHILSDAEEICErFVIIKDGTKI 207
Cdd:PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNkTVFVITHTMEHVLEVAD-EVIVMDKGKI 254
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
3-174 |
1.12e-17 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 78.35 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVT-KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngikISKMKSEIGYLPQYPn 81
Cdd:cd03223 1 IELENLSlATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI------GMPEGEDLLFLPQRP- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 82 ffhWMTareTLTFMGQLSGLKKEELSksipkmlekvglkeeenakvstfsGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:cd03223 74 ---YLP---LGTLREQLIYPWDDVLS------------------------GGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
170
....*....|...
gi 558693083 162 PIGRREVLNLIKE 174
Cdd:cd03223 124 EESEDRLYQLLKE 136
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-217 |
1.13e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 82.76 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTksfkGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISK----MKSEIGYL 76
Cdd:COG1129 257 LEVEGLS----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSprdaIRAGIAYV 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQ-------YPNffhwMTARE--TLTFMGQLSG---LKKEELSKSIPKMLEKVGLK-EEENAKVSTFSGGMKQRLGIAQA 143
Cdd:COG1129 333 PEdrkgeglVLD----LSIREniTLASLDRLSRgglLDRRRERALAEEYIKRLRIKtPSPEQPVGNLSGGNQQKVVLAKW 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 144 LLHKPSLIVMDEP-----VSAldpigRREVLNLIKEIKKD-TTILLsthILSDAEEI---CERFVIIKDGTKI-----ED 209
Cdd:COG1129 409 LATDPKVLILDEPtrgidVGA-----KAEIYRLIRELAAEgKAVIV---ISSELPELlglSDRILVMREGRIVgeldrEE 480
|
....*...
gi 558693083 210 TTITELLH 217
Cdd:COG1129 481 ATEEAIMA 488
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
28-210 |
1.47e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 79.82 E-value: 1.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 28 GECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---------IGYLPQYPNFFHWMTARETLTFMGQL 98
Cdd:PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEaraklrakhVGFVFQSFMLIPTLNALENVELPALL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 99 SGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD 178
Cdd:PRK10584 116 RGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE 195
|
170 180 190
....*....|....*....|....*....|....
gi 558693083 179 --TTILLSTHILSDAEEiCERFVIIKDGTKIEDT 210
Cdd:PRK10584 196 hgTTLILVTHDLQLAAR-CDRRLRLVNGQLQEEA 228
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
3-186 |
1.67e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 82.55 E-value: 1.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFkgkiavNNFSMELQAG-----ECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNgIKISkmkseigYLP 77
Cdd:PRK13409 341 VEYPDLTKKL------GDFSLEVEGGeiyegEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKIS-------YKP 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QY--PNFFhwMTARETLTFMGQ--LSGLKKEELSK--SIPKMLEKvglkeeenaKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PRK13409 407 QYikPDYD--GTVEDLLRSITDdlGSSYYKSEIIKplQLERLLDK---------NVKDLSGGELQRVAIAACLSRDADLY 475
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 152 VMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTH 186
Cdd:PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIaeEREATALVVDH 512
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
3-215 |
1.92e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 80.19 E-value: 1.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM--------KSEIG 74
Cdd:PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMsrsrlytvRKRMS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYPNFFHWMTARETLTF-MGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK11831 88 MLFQSGALFTDMNVFDNVAYpLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:PRK11831 168 DEPFVGQDPITMGVLVKLISELNSalGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-186 |
4.01e-17 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 81.54 E-value: 4.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLnGIKIskmksEIGYLPQYpnff 83
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----EVAYFDQH---- 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 hwmtaRETL----TFMGQLSGLKKEELSKSIPKMLekVG-----LKEEENAK--VSTFSGGMKQRLGIAQALLhKPS-LI 151
Cdd:PRK11147 391 -----RAELdpekTVMDNLAEGKQEVMVNGRPRHV--LGylqdfLFHPKRAMtpVKALSGGERNRLLLARLFL-KPSnLL 462
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 152 VMDEPVSALDPigrrEVLNLIKEIKKD--TTILLSTH 186
Cdd:PRK11147 463 ILDEPTNDLDV----ETLELLEELLDSyqGTVLLVSH 495
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
3-218 |
5.47e-17 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 81.05 E-value: 5.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK---GKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVL---------------LNG 63
Cdd:PRK10261 13 LAVENLNIAFMqeqQKIaAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQcdkmllrrrsrqvieLSE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 64 IKISKMK----SEIGYLPQYPnffhwMTARETLTFMGQL--------SGLKKEELSKSIPKMLEKVGLKEEEnAKVSTF- 130
Cdd:PRK10261 93 QSAAQMRhvrgADMAMIFQEP-----MTSLNPVFTVGEQiaesirlhQGASREEAMVEAKRMLDQVRIPEAQ-TILSRYp 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 131 ---SGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTT--ILLSTHILSDAEEICERFVIIKDGT 205
Cdd:PRK10261 167 hqlSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQGE 246
|
250
....*....|...
gi 558693083 206 KIEDTTITELLHR 218
Cdd:PRK10261 247 AVETGSVEQIFHA 259
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-216 |
7.83e-17 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 78.74 E-value: 7.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFK--GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNpTAGEVLLNG-----IKISKMKSEIG 74
Cdd:cd03289 2 QMTVKDLTAKYTegGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGvswnsVPLQKWRKAFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQyPNFFHWMTARETLTFMGQLSglkkeelSKSIPKMLEKVGLK---EEENAKVS--------TFSGGMKQRLGIAQA 143
Cdd:cd03289 81 VIPQ-KVFIFSGTFRKNLDPYGKWS-------DEEIWKVAEEVGLKsviEQFPGQLDfvlvdggcVLSHGHKQLMCLARS 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELL 216
Cdd:cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL 224
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
32-204 |
1.13e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 78.13 E-value: 1.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 32 GLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISK-----MKSEIGYLPQYPNFFHWMTARET-LTFMGQLSGLKK 103
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpLDYSKrgllaLRQQVATVFQDPEQQIFYTDIDSdIAFSLRNLGVPE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 104 EELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTIL 182
Cdd:PRK13638 111 AEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIvAQGNHVI 190
|
170 180
....*....|....*....|..
gi 558693083 183 LSTHILSDAEEICERFVIIKDG 204
Cdd:PRK13638 191 ISSHDIDLIYEISDAVYVLRQG 212
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
15-186 |
1.46e-16 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 77.19 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNN----FSMELQAGECVGLIGPNGAGKSTLIKVISDITnPTAGEVLLNGIKISKMK-SEI----GYLPQ--YPNFF 83
Cdd:COG4138 5 DVAVAGrlgpISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSaAELarhrAYLSQqqSPPFA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 hwMTARETLTfMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLH-------KPSLIVMDEP 156
Cdd:COG4138 84 --MPVFQYLA-LHQPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEP 160
|
170 180 190
....*....|....*....|....*....|.
gi 558693083 157 VSALDPIGRREVLNLIKEIK-KDTTILLSTH 186
Cdd:COG4138 161 MNSLDVAQQAALDRLLRELCqQGITVVMSSH 191
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
25-186 |
1.56e-16 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 76.43 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISKMKSEIGYLPQYPNFFHWMTARETLTFMGQLSGLK 102
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGktATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 103 KEELSKSipkMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIK-EIKKDTTI 181
Cdd:PRK13543 114 AKQMPGS---ALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISaHLRGGGAA 190
|
....*
gi 558693083 182 LLSTH 186
Cdd:PRK13543 191 LVTTH 195
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-186 |
2.86e-16 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 78.86 E-value: 2.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISkMKSEIGYLPQYP 80
Cdd:PRK10522 322 TLELRNVTFAYqDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT-AEQPEDYRKLFS 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NFFH--WMtaretltFMGQLSGLKKEELSKSIPKMLEKVGLK---EEENAKVST--FSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK10522 401 AVFTdfHL-------FDQLLGPEGKPANPALVEKWLERLKMAhklELEDGRISNlkLSKGQKKRLALLLALAEERDILLL 473
|
170 180 190
....*....|....*....|....*....|....*..
gi 558693083 154 DEPVSALDPIGRR----EVLNLIKEIKKdtTILLSTH 186
Cdd:PRK10522 474 DEWAADQDPHFRRefyqVLLPLLQEMGK--TIFAISH 508
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-248 |
5.01e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.92 E-value: 5.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS--DITNPTAGEVLLN----------------GI 64
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRgmDQYEPTSGRIIYHvalcekcgyverpskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 65 KISK-----MKSEIGYLPQYPNFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVST---------- 129
Cdd:TIGR03269 81 PCPVcggtlEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVdliemvqlsh 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 130 --------FSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKE--IKKDTTILLSTHILSDAEEICERFV 199
Cdd:TIGR03269 161 rithiardLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDLSDKAI 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 558693083 200 IIKDGTKIEDTTITELLHRNRENkliIEITAKDQNwIEVVKKLPYVKNV 248
Cdd:TIGR03269 241 WLENGEIKEEGTPDEVVAVFMEG---VSEVEKECE-VEVGEPIIKVRNV 285
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
19-186 |
6.00e-16 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 74.59 E-value: 6.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 19 NNFSMELQAGECVGLIGPNGAGKSTLIKVISD--ITNPTAGEVLLNGIKISK-MKSEIGYLPQYPNFFHWMTARETLTFM 95
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLDKnFQRSTGYVEQQDVHSPNLTVREALRFS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 96 GQLSGLKKEElsksipkmlekvglkeeenakvstfsggmKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI 175
Cdd:cd03232 104 ALLRGLSVEQ-----------------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL 154
|
170
....*....|..
gi 558693083 176 KKD-TTILLSTH 186
Cdd:cd03232 155 ADSgQAILCTIH 166
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
2-186 |
7.32e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 77.52 E-value: 7.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGkiavnnFSM-----ELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNgIKISkmkseigYL 76
Cdd:COG1245 341 LVEYPDLTKSYGG------FSLeveggEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED-LKIS-------YK 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETL-----TFMGqlSGLKKEELSK--SIPKMLEKvglkeeenaKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:COG1245 407 PQYISPDYDGTVEEFLrsantDDFG--SSYYKTEIIKplGLEKLLDK---------NVKDLSGGELQRVAIAACLSRDAD 475
|
170 180 190
....*....|....*....|....*....|....*....
gi 558693083 150 LIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTH 186
Cdd:COG1245 476 LYLLDEPSAHLDVEQRLAVAKAIRRFaeNRGKTAMVVDH 514
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-204 |
7.85e-16 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 75.62 E-value: 7.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGiKISKMKSEIGYLPQypnffhwMTARETLTFMG 96
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISAGLSGQ-------LTGIENIEFKM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK 176
Cdd:PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190
|
170 180
....*....|....*....|....*....
gi 558693083 177 -KDTTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK13546 191 eQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-216 |
1.26e-15 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 77.26 E-value: 1.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFK--GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNpTAGEVLLNGIK-----ISKMKSEIG 74
Cdd:TIGR01271 1217 QMDVQGLTAKYTeaGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSwnsvtLQTWRKAFG 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQyPNFFHWMTARETLTFMGQLSglkkeelSKSIPKMLEKVGLK---EEENAKVS--------TFSGGMKQRLGIAQA 143
Cdd:TIGR01271 1296 VIPQ-KVFIFSGTFRKNLDPYEQWS-------DEEIWKVAEEVGLKsviEQFPDKLDfvlvdggyVLSNGHKQLMCLARS 1367
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELL 216
Cdd:TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
3-216 |
1.80e-15 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 75.33 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSF---KGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP----TAGEVLLNGIKISKMK---- 70
Cdd:COG4170 4 LDIRNLTIEIdtpQGRVkAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSprer 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 71 -----SEIGYLPQYPN---------FFHWMTARETLTFMGQLSGLKKEELSKSIpKMLEKVGLKEEE---NAKVSTFSGG 133
Cdd:COG4170 84 rkiigREIAMIFQEPSscldpsakiGDQLIEAIPSWTFKGKWWQRFKWRKKRAI-ELLHRVGIKDHKdimNSYPHELTEG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 134 MKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKK--DTTILLSTHILSDAEEICERFVIIKDGTKIEDTT 211
Cdd:COG4170 163 ECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlqGTSILLISHDLESISQWADTITVLYCGQTVESGP 242
|
....*
gi 558693083 212 ITELL 216
Cdd:COG4170 243 TEQIL 247
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
21-188 |
3.22e-15 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 73.43 E-value: 3.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 21 FSMELQAGECVGLIGPNGAGKSTLIKVISDITnPTAGEVLLNGIKISKMK-SEI----GYLPQY--PNF----FHWMTar 89
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSaAELarhrAYLSQQqtPPFampvFQYLT-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 90 etltfMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLH-KPS------LIVMDEPVSALDp 162
Cdd:PRK03695 92 -----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvWPDinpagqLLLLDEPMNSLD- 165
|
170 180
....*....|....*....|....*...
gi 558693083 163 IGRREVLN-LIKEI-KKDTTILLSTHIL 188
Cdd:PRK03695 166 VAQQAALDrLLSELcQQGIAVVMSSHDL 193
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
3-161 |
4.31e-15 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 75.21 E-value: 4.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEV-LLNGIKiskmkseIGYLPQYPn 81
Cdd:PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIgLAKGIK-------LGYFAQHQ- 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 82 fFHWMTARETLtfMGQLSGLKKEELSKSIPKMLEKVGLKEEENAKVST-FSGGMKQRLGIAQALLHKPSLIVMDEPVSAL 160
Cdd:PRK10636 385 -LEFLRADESP--LQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRrFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461
|
.
gi 558693083 161 D 161
Cdd:PRK10636 462 D 462
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
19-204 |
8.00e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 72.44 E-value: 8.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 19 NNFSMELQAG-----ECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISkmkseigYLPQYPNFFHWMTARETLT 93
Cdd:cd03237 11 GEFTLEVEGGsisesEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKADYEGTVRDLLS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 94 FMGQLSGLK---KEELSKsiPKMLEKVGLKEeenakVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN 170
Cdd:cd03237 84 SITKDFYTHpyfKTEIAK--PLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 558693083 171 LIKEI--KKDTTILLSTHILSDAEEICERfVIIKDG 204
Cdd:cd03237 157 VIRRFaeNNEKTAFVVEHDIIMIDYLADR-LIVFEG 191
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
20-204 |
3.56e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 72.39 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGYLP---QYPNFF-----HW 85
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAqrlargLVYLPedrQSSGLYldaplAW 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MTARETLTFMGQLSGLKKEelSKSIPKMLEKVGLK-EEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIG 164
Cdd:PRK15439 361 NVCALTHNRRGFWIKPARE--NAVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 165 RREVLNLIKEIKKD-TTILLsthILSDAEEI---CERFVIIKDG 204
Cdd:PRK15439 439 RNDIYQLIRSIAAQnVAVLF---ISSDLEEIeqmADRVLVMHQG 479
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
3-216 |
6.53e-14 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 70.99 E-value: 6.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFK---GKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNP----TAGEVLLNGIKISKMkseig 74
Cdd:PRK15093 4 LDIRNLTIEFKtsdGWVkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDnwrvTADRMRFDDIDLLRL----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 ylpqypnffhwmTARE---------TLTFMGQLSGLKKEE-----LSKSIP--------------------KMLEKVGLK 120
Cdd:PRK15093 79 ------------SPRErrklvghnvSMIFQEPQSCLDPSErvgrqLMQNIPgwtykgrwwqrfgwrkrraiELLHRVGIK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 121 EEENAKVS---TFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEIC 195
Cdd:PRK15093 147 DHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNnnTTILLISHDLQMLSQWA 226
|
250 260
....*....|....*....|.
gi 558693083 196 ERFVIIKDGTKIEDTTITELL 216
Cdd:PRK15093 227 DKINVLYCGQTVETAPSKELV 247
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-161 |
8.33e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 71.50 E-value: 8.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEvllngIKISKmKSEIGYLPQypnf 82
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-----IEIGE-TVKLAYVDQ---- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 fhwmtARETLTfmgqlsGLKK--EELSKSIPKMleKVGLKE---------------EENAKVSTFSGGMKQRLGIAQALL 145
Cdd:TIGR03719 393 -----SRDALD------PNKTvwEEISGGLDII--KLGKREipsrayvgrfnfkgsDQQKKVGQLSGGERNRVHLAKTLK 459
|
170
....*....|....*.
gi 558693083 146 HKPSLIVMDEPVSALD 161
Cdd:TIGR03719 460 SGGNVLLLDEPTNDLD 475
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
17-194 |
1.02e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 71.28 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSEigylpqypnffHWmtaRETLTFMG 96
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD-----------SW---RSRLAVVS 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLSGLKKEELSKSI--------PKMLEKV---------------GLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK10789 396 QTPFLFSDTVANNIalgrpdatQQEIEHVarlasvhddilrlpqGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 154 DEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEI 194
Cdd:PRK10789 476 DDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSaltEASEI 519
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
3-195 |
1.33e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 68.05 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK----MKSEIGYLPQ 78
Cdd:PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdlctYQKQLCFVGH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLTFMGQLSGLKKEelsksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVS 158
Cdd:PRK13540 82 RSGINPYLTLRENCLYDIHFSPGAVG-----ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 558693083 159 ALDPIGRREVLNLIKE-IKKDTTILLSTHI-----LSDAEEIC 195
Cdd:PRK13540 157 ALDELSLLTIITKIQEhRAKGGAVLLTSHQdlplnKADYEEYH 199
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
2-161 |
1.40e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 70.26 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKI-AVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMK---SEIGYLP 77
Cdd:PRK11650 3 GLKLQAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEpadRDIAMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 Q----YPnffHwMTARETLTFMGQLSGLKKEELSKSI---PKMLEKVGLKEEenaKVSTFSGGMKQRLGIAQALLHKPSL 150
Cdd:PRK11650 83 QnyalYP---H-MSVRENMAYGLKIRGMPKAEIEERVaeaARILELEPLLDR---KPRELSGGQRQRVAMGRAIVREPAV 155
|
170
....*....|.
gi 558693083 151 IVMDEPVSALD 161
Cdd:PRK11650 156 FLFDEPLSNLD 166
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
3-186 |
4.94e-13 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 67.36 E-value: 4.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS-----DITNptaGEVLLNGIKISKMKSE----- 72
Cdd:CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAghpayKILE---GDILFKGESILDLEPEerahl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 -IGYLPQYP-------NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKE---EENAKvSTFSGGMKQRLGIA 141
Cdd:CHL00131 85 gIFLAFQYPieipgvsNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPsflSRNVN-EGFSGGEKKRNEIL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIK-KDTTILLSTH 186
Cdd:CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMtSENSIILITH 209
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-161 |
5.51e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.81 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLN-GIKiskmkseIGYLPQYPNF 82
Cdd:TIGR03719 7 MNRVSKVVPPKKEIlKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIK-------VGYLPQEPQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWMTARE-----------TLTFMGQLSGLKKEElSKSIPKMLEKVGLKEEE-------------------------NAK 126
Cdd:TIGR03719 80 DPTKTVREnveegvaeikdALDRFNEISAKYAEP-DADFDKLAAEQAELQEIidaadawdldsqleiamdalrcppwDAD 158
|
170 180 190
....*....|....*....|....*....|....*
gi 558693083 127 VSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
17-220 |
7.93e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 67.84 E-value: 7.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKS-TLIKVISDITNP---TAGEVLLNGIKISKMK---------SEIGYLPQYPnff 83
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISekerrnlvgAEVAMIFQDP--- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 hwMTARE---TLTF--MGQLS----GLKKEELSKSIpKMLEKVGLKEEEnAKVSTF----SGGMKQRLGIAQALLHKPSL 150
Cdd:PRK11022 99 --MTSLNpcyTVGFqiMEAIKvhqgGNKKTRRQRAI-DLLNQVGIPDPA-SRLDVYphqlSGGMSQRVMIAMAIACRPKL 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 151 IVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNR 220
Cdd:PRK11022 175 LIADEPTTALDVTIQAQIIELLLELqqKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
29-219 |
8.89e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 68.85 E-value: 8.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 29 ECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYLPQYPNFFHWmTARETLTFMGQ------ 97
Cdd:PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgltdLRRVLSIIPQSPVLFSG-TVRFNIDPFSEhndadl 1341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 98 LSGLKKEELSKSIPKmlEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKK 177
Cdd:PLN03232 1342 WEALERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK 1419
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 558693083 178 DTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELLHRN 219
Cdd:PLN03232 1420 SCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-215 |
2.03e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 67.06 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKI----SK--MKSEIGYLPQ 78
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfksSKeaLENGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHWMTARETLtFMGQ--LSGL--KKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMD 154
Cdd:PRK10982 81 ELNLVLQRSVMDNM-WLGRypTKGMfvDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558693083 155 EPVSALDpigRREVLNLIKEIKK----DTTILLSTHILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:PRK10982 160 EPTSSLT---EKEVNHLFTIIRKlkerGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-59 |
2.14e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 67.07 E-value: 2.14e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEV 59
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-216 |
2.40e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 67.46 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 22 SMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIGYLPQYPNFFHWmTARETLTFMG 96
Cdd:PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFglmdlRKVLGIIPQAPVLFSG-TVRFNLDPFN 1337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLS------GLKKEELSKSIPKmlEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPigRREVL- 169
Cdd:PLN03130 1338 EHNdadlweSLERAHLKDVIRR--NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV--RTDALi 1413
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 558693083 170 -NLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIEDTTITELL 216
Cdd:PLN03130 1414 qKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
14-162 |
3.22e-12 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 66.70 E-value: 3.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 14 GKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITnPTAGEVLlngIKISKMKseIGYLPQYPnFFHWMTARETLT 93
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRL---TKPAKGK--LFYVPQRP-YMTLGTLRDQII 536
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558693083 94 FMGQLSGLKKEELS-KSIPKMLEKVGLKE--EENAKVST-------FSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP 162
Cdd:TIGR00954 537 YPDSSEDMKRRGLSdKDLEQILDNVQLTHilEREGGWSAvqdwmdvLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
28-161 |
3.99e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 66.67 E-value: 3.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 28 GECVGLIGPNGAGKSTLIKVISDITNP---TAGEVLLNGIKI-SKMKSEIGYLPQYPNFFHWMTARETLTF---MGQLSG 100
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRPLdSSFQRSIGYVQQQDLHLPTSTVRESLRFsayLRQPKS 868
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 101 LKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGM----KQRLGIAQALLHKPSLIV-MDEPVSALD 161
Cdd:TIGR00956 869 VSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLLfLDEPTSGLD 934
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-215 |
4.62e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 66.20 E-value: 4.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVT-KSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE------IGY 75
Cdd:COG3845 258 LEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRerrrlgVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQ-------YPNffhwMTARETLTfmgqLSGLKKEELSKSI----PKMLEKV-GLKEE-------ENAKVSTFSGGMKQ 136
Cdd:COG3845 338 IPEdrlgrglVPD----MSVAENLI----LGRYRRPPFSRGGfldrKAIRAFAeELIEEfdvrtpgPDTPARSLSGGNQQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 137 RLGIAQALLHKPSLIVMDEPVSALDpIG-----RREvlnLIKEIKKDTTILLsthILSDAEEI---CERFVIIKDG---- 204
Cdd:COG3845 410 KVILARELSRDPKLLIAAQPTRGLD-VGaiefiHQR---LLELRDAGAAVLL---ISEDLDEIlalSDRIAVMYEGrivg 482
|
250
....*....|..
gi 558693083 205 -TKIEDTTITEL 215
Cdd:COG3845 483 eVPAAEATREEI 494
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-204 |
4.88e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 65.96 E-value: 4.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKiaVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS------KMKSEIGYLP 77
Cdd:PRK09700 267 EVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprspldAVKKGMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 78 QY---PNFFHWMTARETLTFMGQL--SGLK--------KEELsKSIPKMLEKVGLK-EEENAKVSTFSGGMKQRLGIAQA 143
Cdd:PRK09700 345 ESrrdNGFFPNFSIAQNMAISRSLkdGGYKgamglfheVDEQ-RTAENQRELLALKcHSVNQNITELSGGNQQKVLISKW 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 144 LLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD-TTILLSTHILSDAEEICERFVIIKDG 204
Cdd:PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDgKVILMVSSELPEIITVCDRIAVFCEG 485
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
25-207 |
7.16e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 65.90 E-value: 7.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVISDITNPTA----GEVLLNGIKISKMK----SEIGYLPQYPNFFHWMTARETLTFMG 96
Cdd:TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHigveGVITYDGITPEEIKkhyrGDVVYNAETDVHFPHLTVGETLDFAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLS-------GLKKEELSKSIPKMLEKV-GLKEEENAKVST-----FSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPI 163
Cdd:TIGR00956 164 RCKtpqnrpdGVSREEYAKHIADVYMATyGLSHTRNTKVGNdfvrgVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 164 GRREVLNLIKEIKK--DTTILLSthILSDAEEICERF---VIIKDGTKI 207
Cdd:TIGR00956 244 TALEFIRALKTSANilDTTPLVA--IYQCSQDAYELFdkvIVLYEGYQI 290
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-204 |
9.26e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 65.04 E-value: 9.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 4 EIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS-DITNPTAGEVLLNGIK------ISKMKSEIGYL 76
Cdd:PRK10938 262 VLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITgDHPQGYSNDLTLFGRRrgsgetIWDIKKHIGYV 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PqypNFFHW-----MTARETLtfmgqLSGL---------KKEELSKSIPKMLEKVGL-KEEENAKVSTFSGGmKQRLG-I 140
Cdd:PRK10938 342 S---SSLHLdyrvsTSVRNVI-----LSGFfdsigiyqaVSDRQQKLAQQWLDILGIdKRTADAPFHSLSWG-QQRLAlI 412
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558693083 141 AQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTILLSTHILSDAEE-ICERFVIIKDG 204
Cdd:PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLisEGETQLLFVSHHAEDAPAcITHRLEFVPDG 479
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
3-260 |
9.67e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.77 E-value: 9.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIA---VNNFSMELQAGECVGLIGPNGAGKSTLIK-VISDITNPTAGEVLLNGikiskmksEIGYLPQ 78
Cdd:PLN03232 615 ISIKNGYFSWDSKTSkptLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRG--------SVAYVPQ 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 79 YPNFFHwMTARETLTFMgqlSGLKKEELSKSIPKMLEKVGL-------KEEENAKVSTFSGGMKQRLGIAQALLHKPSLI 151
Cdd:PLN03232 687 VSWIFN-ATVRENILFG---SDFESERYWRAIDVTALQHDLdllpgrdLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 152 VMDEPVSALDPIGRREVLN--LIKEIKKDTTILLST--HILSdaeeICERFVIIKDGTKIEDTTITELLHRNRENKLIIE 227
Cdd:PLN03232 763 IFDDPLSALDAHVAHQVFDscMKDELKGKTRVLVTNqlHFLP----LMDRIILVSEGMIKEEGTFAELSKSGSLFKKLME 838
|
250 260 270
....*....|....*....|....*....|...
gi 558693083 228 ITAKDQNWIEVVKKlpyVKNVEVVGLKIKVKVE 260
Cdd:PLN03232 839 NAGKMDATQEVNTN---DENILKLGPTVTIDVS 868
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-189 |
1.38e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 64.97 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 16 IAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGYLPQYPNFFHWmTARE 90
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKiglhdLRFKITIIPQDPVLFSG-SLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 91 TLTFMGQLS------GLKKEELSKSIPKMLEKVGLKEEENAKvsTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDpig 164
Cdd:TIGR00957 1379 NLDPFSQYSdeevwwALELAHLKTFVSALPDKLDHECAEGGE--NLSVGQRQLVCLARALLRKTKILVLDEATAAVD--- 1453
|
170 180
....*....|....*....|....*....
gi 558693083 165 rREVLNLIKEIKK----DTTILLSTHILS 189
Cdd:TIGR00957 1454 -LETDNLIQSTIRtqfeDCTVLTIAHRLN 1481
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
19-186 |
2.43e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.28 E-value: 2.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 19 NNFSMELQAGECVGLIGPNGAGKSTLIKVISDI--TNPTAGEVLLNGIKISKMKSEIGYLPQYPNFfhwMTARETLTFMG 96
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAlkGTPVAGCVDVPDNQFGREASLIDAIGRKGDF---KDAVELLNAVG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 qlsglkkeeLSkSIPKMLekvglkeeenAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP----IGRREVLNLI 172
Cdd:COG2401 124 ---------LS-DAVLWL----------RRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRqtakRVARNLQKLA 183
|
170
....*....|....
gi 558693083 173 KEIKKdtTILLSTH 186
Cdd:COG2401 184 RRAGI--TLVVATH 195
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
13-216 |
1.14e-10 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 61.00 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 13 KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS-DITNPTA-------GEVLLNG-----IKISKMKSEIGYLPQY 79
Cdd:PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAgDLTGGGAprgarvtGDVTLNGeplaaIDAPRLARLRAVLPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 80 PNFFHWMTAREtLTFMGQL-----SGLKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQAL--LHK----- 147
Cdd:PRK13547 92 AQPAFAFSARE-IVLLGRYpharrAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqLWPphdaa 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 148 --PSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSTHILSDAEEICERFVIIKDGTKIEDTTITELL 216
Cdd:PRK13547 171 qpPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwnLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
25-188 |
1.46e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 61.75 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVISDITNPT-----------------AGEVLLNGI-KISKMKSEIGYLPQY----PNF 82
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNlgdyeeepswdevlkrfRGTELQNYFkKLYNGEIKVVHKPQYvdliPKV 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWmTARETLtfmgqlsglKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDp 162
Cdd:PRK13409 176 FKG-KVRELL---------KKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD- 244
|
170 180
....*....|....*....|....*..
gi 558693083 163 IGRR-EVLNLIKEIKKDTTILLSTHIL 188
Cdd:PRK13409 245 IRQRlNVARLIRELAEGKYVLVVEHDL 271
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
6-161 |
2.49e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.90 E-value: 2.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 6 KNVTKSFKGKIAV-NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGE-VLLNGIKiskmkseIGYLPQYPNFF 83
Cdd:PRK11819 10 NRVSKVVPPKKQIlKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEaRPAPGIK-------VGYLPQEPQLD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 HWMTARETL-TFMGQLSGLKKE--ELSK--SIP-----KMLEKVGLKEEE-------------------------NAKVS 128
Cdd:PRK11819 83 PEKTVRENVeEGVAEVKAALDRfnEIYAayAEPdadfdALAAEQGELQEIidaadawdldsqleiamdalrcppwDAKVT 162
|
170 180 190
....*....|....*....|....*....|...
gi 558693083 129 TFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-216 |
3.93e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 60.50 E-value: 3.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSF-KGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK-----MKSEIGY 75
Cdd:PRK10790 340 RIDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSlshsvLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQYP-----NFFHWMT------------ARETLtfmgQLSglkkeELSKSIPKMLEKVgLKEEENakvsTFSGGMKQRL 138
Cdd:PRK10790 420 VQQDPvvladTFLANVTlgrdiseeqvwqALETV----QLA-----ELARSLPDGLYTP-LGEQGN----NLSVGQKQLL 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 139 GIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKDTTILLSTHILS---DAEEIcerfVIIKDGTKIEDTTITEL 215
Cdd:PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLStivEADTI----LVLHRGQAVEQGTHQQL 561
|
.
gi 558693083 216 L 216
Cdd:PRK10790 562 L 562
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
18-219 |
4.55e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.34 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngikisKMKSEIGYLPQYPnffhWM---TARETLTF 94
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--------HMKGSVAYVPQQA----WIqndSLRENILF 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 95 MGQLSGLKKEELSKSIPKM--LEKV--GLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP-IGRREVL 169
Cdd:TIGR00957 722 GKALNEKYYQQVLEACALLpdLEILpsGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAhVGKHIFE 801
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 558693083 170 NLI--KEIKKDTTILLSTHILSDAEEIceRFVIIKDGTKI-EDTTITELLHRN 219
Cdd:TIGR00957 802 HVIgpEGVLKNKTRILVTHGISYLPQV--DVIIVMSGGKIsEMGSYQELLQRD 852
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
25-188 |
4.90e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 60.18 E-value: 4.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVISDITNPTAG---------EVL--LNGI-------KISKMKSEIGYLPQY----PNF 82
Cdd:COG1245 96 PKKGKVTGILGPNGIGKSTALKILSGELKPNLGdydeepswdEVLkrFRGTelqdyfkKLANGEIKVAHKPQYvdliPKV 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWmTARETLtfmgqlsglKKEELSKSIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP 162
Cdd:COG1245 176 FKG-TVRELL---------EKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDI 245
|
170 180
....*....|....*....|....*..
gi 558693083 163 IGRREVLNLIKEI-KKDTTILLSTHIL 188
Cdd:COG1245 246 YQRLNVARLIRELaEEGKYVLVVEHDL 272
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
5-237 |
6.07e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 60.14 E-value: 6.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 5 IKNVTKSFKGKI---AVNNFSMELQAGECVGLIGPNGAGKSTLIK-VISDITNPTAGEVLLNGikiskmksEIGYLPQYP 80
Cdd:PLN03130 617 IKNGYFSWDSKAerpTLSNINLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRG--------TVAYVPQVS 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 81 NFFHwMTARETLTFMGQLSGLKKEelsksipKMLEKVGLKE-----------EENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:PLN03130 689 WIFN-ATVRDNILFGSPFDPERYE-------RAIDVTALQHdldllpggdltEIGERGVNISGGQKQRVSMARAVYSNSD 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 150 LIVMDEPVSALDPIGRREVLN--LIKEIKKDTTILLST--HILSDAEEIcerfVIIKDGTKIEDTTITELLHRNRENKLI 225
Cdd:PLN03130 761 VYIFDDPLSALDAHVGRQVFDkcIKDELRGKTRVLVTNqlHFLSQVDRI----ILVHEGMIKEEGTYEELSNNGPLFQKL 836
|
250
....*....|..
gi 558693083 226 IEITAKDQNWIE 237
Cdd:PLN03130 837 MENAGKMEEYVE 848
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-185 |
6.99e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 59.63 E-value: 6.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSfkgkiAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISK------MKSEIGY 75
Cdd:PRK10762 257 RLKVDNLSGP-----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTrspqdgLANGIVY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 76 LPQ---YPNFFHWMTARE--TLTFMGQLS----GLKKEELSKSI-----------PKMLEKVGLkeeenakvstFSGGMK 135
Cdd:PRK10762 332 ISEdrkRDGLVLGMSVKEnmSLTALRYFSraggSLKHADEQQAVsdfirlfniktPSMEQAIGL----------LSGGNQ 401
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 136 QRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLST 185
Cdd:PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEglSIILVSS 453
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
25-161 |
1.08e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 59.19 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVIsditnptAGEVLL--------NGIKISKMK-------------------SEIG-YL 76
Cdd:PRK11147 26 IEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLddgriiyeQDLIVARLQqdpprnvegtvydfvaegiEEQAeYL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 77 PQYPNFFHWMTARETLTFMGQLSGLKKE-------ELSKSIPKMLEKVGLkeEENAKVSTFSGGMKQRLGIAQALLHKPS 149
Cdd:PRK11147 99 KRYHDISHLVETDPSEKNLNELAKLQEQldhhnlwQLENRINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPD 176
|
170
....*....|..
gi 558693083 150 LIVMDEPVSALD 161
Cdd:PRK11147 177 VLLLDEPTNHLD 188
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-189 |
1.16e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 57.76 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 28 GECVGLIGPNGAGKSTLIKVISDITNPTAG---------EVL-----------LNGIKISKMKSEIGylPQY----PNFF 83
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGkfddppdwdEILdefrgselqnyFTKLLEGDVKVIVK--PQYvdliPKAV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 84 HWmTARETLTfmgqlsglKKEELSKsIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPI 163
Cdd:cd03236 104 KG-KVGELLK--------KKDERGK-LDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173
|
170 180
....*....|....*....|....*..
gi 558693083 164 GRREVLNLIKEIKKDT-TILLSTHILS 189
Cdd:cd03236 174 QRLNAARLIRELAEDDnYVLVVEHDLA 200
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
20-194 |
6.68e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 56.84 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngikisKMKSEIGYLPQYPnffhWM---TARETLTF-- 94
Cdd:TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--------KHSGRISFSPQTS----WImpgTIKDNIIFgl 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 95 ----MGQLSGLKKEELSKSIPKMLEKVGLKEEENAkvSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN 170
Cdd:TIGR01271 512 sydeYRYTSVIKACQLEEDIALFPEKDKTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
|
170 180
....*....|....*....|....*...
gi 558693083 171 --LIKEIKKDTTILLSTHI--LSDAEEI 194
Cdd:TIGR01271 590 scLCKLMSNKTRILVTSKLehLKKADKI 617
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
24-201 |
2.04e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.96 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 24 ELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISkmkseigYLPQYpnffhwmtaretltfmgqlsglkk 103
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-------YKPQY------------------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 104 eelsksipkmlekvglkeeenakvSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI--KKDTTI 181
Cdd:cd03222 70 ------------------------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLseEGKKTA 125
|
170 180
....*....|....*....|
gi 558693083 182 LLSTHILSDAEEICERFVII 201
Cdd:cd03222 126 LVVEHDLAVLDYLSDRIHVF 145
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
35-189 |
2.82e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 52.95 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 35 GPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-KSEIGYLPQYPNFFHWMTARETLTFMGQLSglkkeELSKSIPKM 113
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIaKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----NSAETLYAA 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 114 LEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKeIKKDT--TILLSTHILS 189
Cdd:PRK13541 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV-MKANSggIVLLSSHLES 184
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-223 |
3.64e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 54.65 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVTKSFKGKIAV---NNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLN------GIKISKMKSE 72
Cdd:PTZ00265 382 KIQFKNVRFHYDTRKDVeiyKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINdshnlkDINLKWWRSK 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 73 IGYLPQYPNFF---------HWMTARETLTFM--------------------------GQLSGLKKEELSKSIPKMLEKV 117
Cdd:PTZ00265 462 IGVVSQDPLLFsnsiknnikYSLYSLKDLEALsnyynedgndsqenknkrnscrakcaGDLNDMSNTTDSNELIEMRKNY 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 118 GLKEEEN--------------------------AKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNL 171
Cdd:PTZ00265 542 QTIKDSEvvdvskkvlihdfvsalpdkyetlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 558693083 172 IKEIKKD---TTILLStHILSDAEEICERFVII---KDGTKIEDTTITELLHRNRENK 223
Cdd:PTZ00265 622 INNLKGNenrITIIIA-HRLSTIRYANTIFVLSnreRGSTVDVDIIGEDPTKDNKENN 678
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
22-168 |
3.89e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 54.40 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 22 SMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIS-----KMKSEIGYLPQYPNFFHWMTARETLTFMg 96
Cdd:PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGayglrELRRQFSMIPQDPVLFDGTVRQNVDPFL- 1408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 qlsglkkEELSKSIPKMLEKVGLKEEE-------NAKV----STFSGGMKQRLGIAQALLHKPS-LIVMDEPVSALDPIG 164
Cdd:PTZ00243 1409 -------EASSAEVWAALELVGLRERVasesegiDSRVleggSNYSVGQRQLMCMARALLKKGSgFILMDEATANIDPAL 1481
|
....
gi 558693083 165 RREV 168
Cdd:PTZ00243 1482 DRQI 1485
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
3-161 |
5.94e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 52.49 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVIS--DITNPTAGEVLLNGIKISKMKSE------IG 74
Cdd:PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPEdragegIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 75 YLPQYP-------NFFHWMTARETLTFMGQLSGLKKEELSKSIPKMLEKVGLKEE---ENAKVStFSGGMKQRLGIAQAL 144
Cdd:PRK09580 82 MAFQYPveipgvsNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDlltRSVNVG-FSGGEKKRNDILQMA 160
|
170
....*....|....*..
gi 558693083 145 LHKPSLIVMDEPVSALD 161
Cdd:PRK09580 161 VLEPELCILDESDSGLD 177
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
18-186 |
6.30e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.88 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGEcvgligpngAGKSTLIKvisditnpTAGEVLLNGIKI-----SKMKSEIGYLPQYPNFFHwMTARETL 92
Cdd:PTZ00265 1255 VNEFSLTKEGGS---------GEDSTVFK--------NSGKILLDGVDIcdynlKDLRNLFSIVSQEPMLFN-MSIYENI 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 93 TFMGQ---LSGLKKEELSKSIPKMLEKVGLKEEENAKV--STFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRRE 167
Cdd:PTZ00265 1317 KFGKEdatREDVKRACKFAAIDEFIESLPNKYDTNVGPygKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
|
170 180
....*....|....*....|.
gi 558693083 168 VLNLIKEIKK--DTTILLSTH 186
Cdd:PTZ00265 1397 IEKTIVDIKDkaDKTIITIAH 1417
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-161 |
8.33e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 52.97 E-value: 8.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 7 NVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLL-NGIKiskmkseIGYLPQYPNFFHW 85
Cdd:PRK15064 6 NITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLdPNER-------LGKLRQDQFAFEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 86 MTARETLtFMG--QLSGLKKE-ELSKSIPKMLEKVGLK-------------------------------EEENAKVSTFS 131
Cdd:PRK15064 79 FTVLDTV-IMGhtELWEVKQErDRIYALPEMSEEDGMKvadlevkfaemdgytaearagelllgvgipeEQHYGLMSEVA 157
|
170 180 190
....*....|....*....|....*....|
gi 558693083 132 GGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
25-219 |
8.48e-08 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 52.22 E-value: 8.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 25 LQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKM-----KSEIGYLPQYPNFF----------HWMTAR 89
Cdd:cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLplhtlRSRLSIILQDPILFsgsirfnldpECKCTD 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 90 ETLTFMGQLSGLKKeeLSKSIPKMLEKVGLKEEENakvstFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVL 169
Cdd:cd03288 124 DRLWEALEIAQLKN--MVKSLPGGLDAVVTEGGEN-----FSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 558693083 170 NLIKEIKKDTTILLSTHILSDAEEiCERFVIIKDGTKIE-DTTITELLHRN 219
Cdd:cd03288 197 KVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVEcDTPENLLAQED 246
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
15-161 |
1.47e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 52.48 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGI-KISKMKSEIGYLPQYPNFFHWMTARE--- 90
Cdd:PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwQLAWVNQETPALPQPALEYVIDGDREyrq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 91 ----------------TLTFMGQLSGLKKEELSKSIPKMLEKVGLKEEE-NAKVSTFSGGMKQRLGIAQALLHKPSLIVM 153
Cdd:PRK10636 94 leaqlhdanerndghaIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQlERPVSDFSGGWRMRLNLAQALICRSDLLLL 173
|
....*...
gi 558693083 154 DEPVSALD 161
Cdd:PRK10636 174 DEPTNHLD 181
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-194 |
2.55e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 49.63 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 17 AVNNFSMELQAGECVGLIGPNGAGKSTLikvisditnptagevLLNGIKISKMKSEIGYLPQYPnffhwmtaRETLTFMG 96
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTL---------------VNEGLYASGKARLISFLPKFS--------RNKLIFID 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 97 QLsglkkeelsksipKMLEKVGLKE-EENAKVSTFSGGMKQRLGIAQALL--HKPSLIVMDEPVSALDPIGRREVLNLIK 173
Cdd:cd03238 67 QL-------------QFLIDVGLGYlTLGQKLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQDINQLLEVIK 133
|
170 180
....*....|....*....|....*
gi 558693083 174 EI--KKDTTILLSTH--ILSDAEEI 194
Cdd:cd03238 134 GLidLGNTVILIEHNldVLSSADWI 158
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
28-161 |
3.30e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 51.77 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 28 GECVGLIGPNGAGKSTLIKVISditNPTAGEVLLNGIKISKM--KSEI-----GYLPQypNFFH--WMTARETLTFMGQL 98
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIRISGFpkKQETfarisGYCEQ--NDIHspQVTVRESLIYSAFL 980
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 99 SGLK---KEELSKSIPKMLEKVGLKEEENA-----KVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PLN03140 981 RLPKevsKEEKMMFVDEVMELVELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
18-205 |
3.86e-07 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 50.02 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 18 VNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSE---------IGYLPQYPnffhWM-- 86
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEatrsrnrysVAYAAQKP----WLln 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 87 -TARETLTFMGQLSGLKKEELSKSI---PKM-LEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSAL- 160
Cdd:cd03290 93 aTVEENITFGSPFNKQRYKAVTDACslqPDIdLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALd 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558693083 161 ----DPIGRREVLNLIKEIKKdtTILLSTH---ILSDAEEIcerfVIIKDGT 205
Cdd:cd03290 173 ihlsDHLMQEGILKFLQDDKR--TLVLVTHklqYLPHADWI----IAMKDGS 218
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
33-202 |
4.07e-07 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 48.90 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 33 LIGPNGAGKSTLIKVISditnptagevLLNGIKISKMKSEIGYLPQYPnffhwmTARETLTFMGQLSGLkkeelsksipk 112
Cdd:cd03227 26 ITGPNGSGKSTILDAIG----------LALGGAQSATRRRSGVKAGCI------VAAVSAELIFTRLQL----------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 113 mlekvglkeeenakvstfSGGMKQRLGIAQAL---LHKP-SLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHi 187
Cdd:cd03227 79 ------------------SGGEKELSALALILalaSLKPrPLYILDEIDRGLDPRDGQALAEAILEHlVKGAQVIVITH- 139
|
170
....*....|....*
gi 558693083 188 LSDAEEICERFVIIK 202
Cdd:cd03227 140 LPELAELADKLIHIK 154
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
20-215 |
5.11e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 50.24 E-value: 5.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVllngikisKMKSEIGYLPQypnfFHWM---TARETLTF-- 94
Cdd:cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--------KHSGRISFSSQ----FSWImpgTIKENIIFgv 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 95 ----MGQLSGLKKEELSKSIPKMLEKVGLKEEENAkvSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLN 170
Cdd:cd03291 123 sydeYRYKSVVKACQLEEDITKFPEKDNTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 558693083 171 --LIKEIKKDTTILLSTHI--LSDAEEIcerfVIIKDGTKIEDTTITEL 215
Cdd:cd03291 201 scVCKLMANKTRILVTSKMehLKKADKI----LILHEGSSYFYGTFSEL 245
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
20-161 |
5.86e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 50.63 E-value: 5.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 20 NFSMELQAGecVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGikiskmKSEIGYLPQYPNFFHWMTARETLTFMGQLS 99
Cdd:PLN03073 529 NFGIDLDSR--IAMVGPNGIGKSTILKLISGELQPSSGTVFRSA------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFP 600
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558693083 100 GLKKEELSKSipkmLEKVGLKEEENAK-VSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PLN03073 601 GVPEQKLRAH----LGSFGVTGNLALQpMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
3-161 |
1.62e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 49.47 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIK----------------------VISDITnpTAGEVL 60
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRymamhaidgipkncqilhveqeVVGDDT--TALQCV 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 61 LNGI--KISKMKSEIGYLPQYPNF-FHWMTARETltfMGQLSGLKKEELSK---SIPKMLEKV--------------GLK 120
Cdd:PLN03073 256 LNTDieRTQLLEEEAQLVAQQRELeFETETGKGK---GANKDGVDKDAVSQrleEIYKRLELIdaytaearaasilaGLS 332
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 558693083 121 ---EEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALD 161
Cdd:PLN03073 333 ftpEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-204 |
2.97e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 48.37 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 1 MKLEIKNVtksfKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNG--IKISKMKSEI----- 73
Cdd:PRK11288 256 VRLRLDGL----KGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPRDAIragim 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 74 ---------GYLPQYP-----NffhwMTAR-ETLTFMGQLSGLKKEELSKS-IPKMLEKVGLKEEenaKVSTFSGGMKQR 137
Cdd:PRK11288 332 lcpedrkaeGIIPVHSvadniN----ISARrHHLRAGCLINNRWEAENADRfIRSLNIKTPSREQ---LIMNLSGGNQQK 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 138 LGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIKEIKKD--TTILLSthilSDAEE---ICERFVIIKDG 204
Cdd:PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQgvAVLFVS----SDLPEvlgVADRIVVMREG 472
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
130-218 |
3.31e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 48.00 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 130 FSGGMKQRLGIAQALLH--KPSLIVMDEPVSALDP--IgrREVLNLIKEIKKDTTILLSTH--ILSDAEEICERFVIIKD 203
Cdd:COG4637 259 LSDGTLRFLALLAALLSprPPPLLCIEEPENGLHPdlL--PALAELLREASERTQVIVTTHspALLDALEPEEVLVLERE 336
|
90 100
....*....|....*....|.
gi 558693083 204 G------TKIEDTTITELLHR 218
Cdd:COG4637 337 DdgetriRRLSDLELPEWLEG 357
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
15-205 |
3.73e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 48.24 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 15 KIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLlngikiskMKSEIGYLPQYPnffhWM---TARET 91
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW--------AERSIAYVPQQA----WImnaTVRGN 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 92 LTFMGQlsgLKKEELSKSIP-KMLEK------VGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDP-I 163
Cdd:PTZ00243 741 ILFFDE---EDAARLADAVRvSQLEAdlaqlgGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAhV 817
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 558693083 164 GRREVLNLIKEIKKDTTILLST---HILSDAEEIcerfVIIKDGT 205
Cdd:PTZ00243 818 GERVVEECFLGALAGKTRVLAThqvHVVPRADYV----VALGDGR 858
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-217 |
4.00e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.80 E-value: 4.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 3 LEIKNVTKsfKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKISKMKSeigyLPQYPNF 82
Cdd:PRK10982 251 LEVRNLTS--LRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA----NEAINHG 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 83 FHWMTA-RETLTFMGQLSgLKKEELSKSIPKMLEKVGLKEEENAK--------------------VSTFSGGMKQRLGIA 141
Cdd:PRK10982 325 FALVTEeRRSTGIYAYLD-IGFNSLISNIRNYKNKVGLLDNSRMKsdtqwvidsmrvktpghrtqIGSLSGGNQQKVIIG 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 142 QALLHKPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTHILSDAEEICERFVIIKDG-----TKIEDTTITEL 215
Cdd:PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELaKKDKGIIIISSEMPELLGITDRILVMSNGlvagiVDTKTTTQNEI 483
|
..
gi 558693083 216 LH 217
Cdd:PRK10982 484 LR 485
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-198 |
1.06e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.67 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 28 GECVGLIGPNGAGKSTLIKVISDITNPTAGEVLLNGIKIskmkseigylpqypnffhwmtaretltfmgqlsglkkeels 107
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED----------------------------------------- 40
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 108 ksIPKMLEKVGLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLI-------KEIKKDTT 180
Cdd:smart00382 41 --ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEelrllllLKSEKNLT 118
|
170
....*....|....*...
gi 558693083 181 ILLSTHILSDAEEICERF 198
Cdd:smart00382 119 VILTTNDEKDLGPALLRR 136
|
|
| DUF4162 |
pfam13732 |
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC ... |
211-298 |
2.23e-05 |
|
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC transporter proteins. The function is not known.
Pssm-ID: 463971 [Multi-domain] Cd Length: 82 Bit Score: 42.20 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 211 TITELLHRNRENKLIIEITAkdqnwIEVVKKLPYVKNVEVVGLKIKVKVESIEINKNMLlqNALEHKVDIVKFKMSNDTL 290
Cdd:pfam13732 2 TLEEIKRSYGRNRIEVETAD-----AEELLELPGVEEVEEEGGGLELKLEDEEAANELL--AALLSGGEIRSFEEEEPSL 74
|
....*...
gi 558693083 291 EEIFLKLV 298
Cdd:pfam13732 75 NDIFIEKV 82
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-176 |
2.45e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 44.23 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVtKSFKGKIAVNnFSMELqagecVGLIGPNGAGKSTLI---------------KVISDITNPTAG------EVL 60
Cdd:COG0419 4 RLRLENF-RSYRDTETID-FDDGL-----NLIVGPNGAGKSTILeairyalygkarsrsKLRSDLINVGSEeasvelEFE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 61 LNG--IKISKMKSEIgylpqypNFFHWMTARETLTFMGQLSGLK------------KEELSKSIPKMLEKVGLKEE---- 122
Cdd:COG0419 77 HGGkrYRIERRQGEF-------AEFLEAKPSERKEALKRLLGLEiyeelkerlkelEEALESALEELAELQKLKQEilaq 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 558693083 123 --ENAKVSTFSGGMKQRLGIAQALlhkpsLIVMDepVSALDPIGRREVLNLIKEIK 176
Cdd:COG0419 150 lsGLDPIETLSGGERLRLALADLL-----SLILD--FGSLDEERLERLLDALEELA 198
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
2-215 |
5.05e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 44.22 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNvtksFKGkiaVNNFSMELQAGECVgLIGPNGAGKSTLIKVISDITNPTAGEV---------------------- 59
Cdd:COG3593 5 KIKIKN----FRS---IKDLSIELSDDLTV-LVGENNSGKSSILEALRLLLGPSSSRKfdeedfylgddpdlpeieielt 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 60 -------LLNGIKISKMKSEIGYLPQYPN----------------FFHWMTARETLTFmgQLSGLKKEELSKSIpkmleK 116
Cdd:COG3593 77 fgsllsrLLRLLLKEEDKEELEEALEELNeelkealkalnellseYLKELLDGLDLEL--ELSLDELEDLLKSL-----S 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 117 VGLKEEENAKVSTFSGGMKQRLGIA--QALLH-----KPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTH-- 186
Cdd:COG3593 150 LRIEDGKELPLDRLGSGFQRLILLAllSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKELsEKPNQVIITTHsp 229
|
250 260
....*....|....*....|....*....
gi 558693083 187 ILSDAEEICERFVIIKDGTKIEDTTITEL 215
Cdd:COG3593 230 HLLSEVPLENIRRLRRDSGGTTSTKLIDL 258
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
2-186 |
1.07e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 39.95 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 2 KLEIKNVtKSFKgkiavnNFSMELqaGECVGLIGPNGAGKSTLIKVISDITN-------------PTAGEVLLNGIkisk 68
Cdd:COG4938 3 SISIKNF-GPFK------EAELEL--KPLTLLIGPNGSGKSTLIQALLLLLQsnfiylpaersgpARLYPSLVREL---- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 69 mkSEIGYLPQY-PNFFHWMTAREtltfmgqLSGLKKEELSKSIPKMLEKVGL-------------------KEEENAKVS 128
Cdd:COG4938 70 --SDLGSRGEYtADFLAELENLE-------ILDDKSKELLEQVEEWLEKIFPgkvevdassdlvrlvfrpsGNGKRIPLS 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558693083 129 TFSGGMKQRLGIAQALLH---KPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTH 186
Cdd:COG4938 141 NVGSGVSELLPILLALLSaakPGSLLIIEEPEAHLHPKAQSALAELLAELaNSGVQVIIETH 202
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
130-186 |
1.12e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.07 E-value: 1.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558693083 130 FSGGMKQRLGIAQALL---HKPSLIVMDEPVSALDPIGRREVLNLIKEI-KKDTTILLSTH 186
Cdd:pfam13304 237 LSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELsRNGAQLILTTH 297
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
2-48 |
4.02e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 38.37 E-value: 4.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 558693083 2 KLEIKNVtKSFKgkiavnNFSMELqAGECVgLIGPNGAGKSTLIKVI 48
Cdd:COG4637 4 RIRIKNF-KSLR------DLELPL-GPLTV-LIGANGSGKSNLLDAL 41
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
29-227 |
4.35e-03 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 37.73 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 29 ECVGLIGPNGAGKSTLIKVISDITNPTAGEVLlnGIKISKmkseigyLPQYPNFF--HWMTARETLTFMGQLSGLKKEEL 106
Cdd:PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI--GLRGDA-------LPLGANSFilPGLTGEENARMMASLYGLDGDEF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558693083 107 SKSIPKMLEkvgLKEEENAKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGR-REVLNLIKEIKKDTTILLsT 185
Cdd:PRK15177 85 SHFCYQLTQ---LEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQlRMQAALACQLQQKGLIVL-T 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 558693083 186 HILSDAEEICERFVIIKDG--TKIED-TTITELLHRNRENKLIIE 227
Cdd:PRK15177 161 HNPRLIKEHCHAFGVLLHGkiTMCEDlAQATALFEQYQSNQATIQ 205
|
|
| |
