|
Name |
Accession |
Description |
Interval |
E-value |
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
12-252 |
1.84e-132 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 373.93 E-value: 1.84e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEE 91
Cdd:COG0410 1 MPMLEVENLHAGYGG-IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP-----PRSGSIRFDGEDITGLPPHR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVRSGIFQVMEGRRIVEDMTVIENLRLGAFTRND-NEVEKDIEMVFDYFPRLKERTG-LAGYLSGGEQQMLAIGRALMAR 169
Cdd:COG0410 75 IARLGIGYVPEGRRIFPSLTVEENLLLGAYARRDrAEVRADLERVYELFPRLKERRRqRAGTLSGGEQQMLAIGRALMSR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 170 PKMILLDEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFY 249
Cdd:COG0410 155 PKLLLLDEPSLGLAPLIVEEIFEIIRRLN-REGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAY 233
|
...
gi 559777052 250 LGG 252
Cdd:COG0410 234 LGV 236
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
15-242 |
3.31e-114 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 327.47 E-value: 3.31e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLPPHERAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKERTG-LAGYLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKqLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
13-252 |
3.31e-74 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 226.68 E-value: 3.31e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkteDGEVTRGEITFMGERIDNKSPEEI 92
Cdd:PRK11614 4 VMLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG-----DPRATSGRIVFDGKDITDWQTAKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKER-TGLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERrIQRAGTMSGGEQQMLAIGRALMSQPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFYLG 251
Cdd:PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
.
gi 559777052 252 G 252
Cdd:PRK11614 237 G 237
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
15-248 |
8.65e-73 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 222.40 E-value: 8.65e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:TIGR03410 1 LEVSNLNVYYGQS-HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLPPHERAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEvEKDIEMVFDYFPRLKE-RTGLAGYLSGGEQQMLAIGRALMARPKMI 173
Cdd:TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS-RKIPDEIYELFPVLKEmLGRRGGDLSGGQQQQLAIARALVTRPKLL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHElLNNEDVKEF 248
Cdd:TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE-LDEDKVRRY 227
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
11-256 |
7.70e-63 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 197.95 E-value: 7.70e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLV-AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYR-----PTSGRILFDGRDITGLPPH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGI---FQVMegrRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLK----------ERTGLAGY------ 151
Cdd:COG0411 75 RIARLGIartFQNP---RLFPELTVLENVLVAAHARLGRGLLAALLRLPRARREEReareraeellERVGLADRadepag 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 -LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:COG0411 152 nLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRV 231
|
250 260
....*....|....*....|....*.
gi 559777052 231 VLDGTKHELLNNEDVKEFYLGGGDEE 256
Cdd:COG0411 232 IAEGTPAEVRADPRVIEAYLGEEAAA 257
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
15-245 |
1.49e-56 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 181.10 E-value: 1.49e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03219 1 LEVRGLTKRFGGL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLPPHEIAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGI---FQVMegrRIVEDMTVIENLRLGAFTR-----NDNEVEKDIEMVFDYFPRLKERTGL-------AGYLSGGEQQM 159
Cdd:cd03219 75 LGIgrtFQIP---RLFPELTVLENVMVAAQARtgsglLLARARREEREARERAEELLERVGLadladrpAGELSYGQQRR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 160 LAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
....*.
gi 559777052 240 LNNEDV 245
Cdd:cd03219 231 RNNPRV 236
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
15-245 |
1.60e-47 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 157.92 E-value: 1.60e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEeiVR 94
Cdd:COG1131 1 IEVRGLTKRYGDKT-ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLR-----PTSGEVRVLGEDVARDPAE--VR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRL--GAFTRNDNEVEKDIEMVFDYFpRLKERTG-LAGYLSGGEQQMLAIGRALMARPK 171
Cdd:COG1131 73 RRIGYVPQEPALYPDLTVRENLRFfaRLYGLPRKEARERIDELLELF-GLTDAADrKVGTLSGGMKQRLGLALALLHDPE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN--EDV 245
Cdd:COG1131 152 LLILDEPTSGLDPEARRELWELLREL-AAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARllEDV 226
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
14-249 |
1.91e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 158.28 E-value: 1.91e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIV 93
Cdd:COG1120 1 MLEAENLSVGYGGRP-VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLK-----PSSGEVLLDGRDLASLSRRELA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RS-GIfqVMEGRRIVEDMTVIENLRLGAF---TRNDNEVEKDIEMVFDYFprlkERTGLAGY-------LSGGEQQMLAI 162
Cdd:COG1120 75 RRiAY--VPQEPPAPFGLTVRELVALGRYphlGLFGRPSAEDREAVEEAL----ERTGLEHLadrpvdeLSGGERQRVLI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 163 GRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:COG1120 149 ARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTP 228
|
....*..
gi 559777052 243 EDVKEFY 249
Cdd:COG1120 229 ELLEEVY 235
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
15-244 |
2.92e-47 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 157.11 E-value: 2.92e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:COG1122 1 IELENLSFSYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLK-----PTSGEVLVDGKDITKKNLRELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 S-GI-FQ------VMEgrrivedmTVIENLrlgAFT-RN----DNEVEKDIEMVFdyfprlkERTGLAGY-------LSG 154
Cdd:COG1122 76 KvGLvFQnpddqlFAP--------TVEEDV---AFGpENlglpREEIRERVEEAL-------ELVGLEHLadrppheLSG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:COG1122 138 GQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNK-EGKTVIIVTHDLDLVAELADRVIVLDDGRIVADG 216
|
250
....*....|
gi 559777052 235 TKHELLNNED 244
Cdd:COG1122 217 TPREVFSDYE 226
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
15-251 |
6.12e-46 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 153.85 E-value: 6.12e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03218 1 LRAENLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLPMHKRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDN--EVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKM 172
Cdd:cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSkkEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 173 ILLDEPSMGLSPLLVKEVFSIIeKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFYLG 251
Cdd:cd03218 155 LLLDEPFAGVDPIAVQDIQKII-KILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
15-249 |
1.19e-43 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 148.10 E-value: 1.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEI-- 92
Cdd:cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-----EPTSGSVLIDGTDINKLKGKALrq 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNevekdIEMVFDYFPR--------LKERTGL-------AGYLSGGEQ 157
Cdd:cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRST-----WRSLFGLFPKeekqralaALERVGLldkayqrADQLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
|
250
....*....|..
gi 559777052 238 ElLNNEDVKEFY 249
Cdd:cd03256 231 E-LTDEVLDEIY 241
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
15-251 |
1.17e-42 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 145.49 E-value: 1.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrgeITFMGERIDNKSPEEIVR 94
Cdd:TIGR04406 2 LVAENLIKSYKKR-KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGK-----ILIDGQDITHLPMHERAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRND---NEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:TIGR04406 76 LGIGYLPQEASIFRKLTVEENIMAVLEIRKDldrAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFYLG 251
Cdd:TIGR04406 156 FILLDEPFAGVDPIAVGDIKKIIKHL-KERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLG 234
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
15-251 |
1.15e-40 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 140.55 E-value: 1.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKS------ 88
Cdd:COG1137 4 LEAENLVKSYGKRT-VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGRIFLDGEDITHLPmhkrar 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 ------PEEivrSGIFQvmegrriveDMTVIENLR--LGAFTRNDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQML 160
Cdd:COG1137 78 lgigylPQE---ASIFR---------KLTVEDNILavLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 161 AIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELL 240
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHL-KERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEIL 224
|
250
....*....|.
gi 559777052 241 NNEDVKEFYLG 251
Cdd:COG1137 225 NNPLVRKVYLG 235
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
10-248 |
5.67e-40 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 138.57 E-value: 5.67e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSP 89
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRV-VLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLR-----PDSGEILVDGQDITGLSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEI--VRSGI---FQvmegrrivE-----DMTVIEN--LRLGAFTRNDnevEKDI-EMVfdyfpRLK-ERTGLAGY---- 151
Cdd:COG1127 75 KELyeLRRRIgmlFQ--------GgalfdSLTVFENvaFPLREHTDLS---EAEIrELV-----LEKlELVGLPGAadkm 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 ---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESG 228
Cdd:COG1127 139 pseLSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADG 218
|
250 260
....*....|....*....|..
gi 559777052 229 KIVLDGTKHELLNNED--VKEF 248
Cdd:COG1127 219 KIIAEGTPEELLASDDpwVRQF 240
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
14-241 |
9.34e-40 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 138.40 E-value: 9.34e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYD---EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:COG1124 1 MLEVRNLSVSYGqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLER-----PWSGEVTFDGRPVTRRRRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVR--SGIFQ----VMEGRRIVEDmTVIENLRLGAFTRNDNEVEKDIEMV------FDYFPRlkertglagYLSGGEQQ 158
Cdd:COG1124 76 AFRRrvQMVFQdpyaSLHPRHTVDR-ILAEPLRIHGLPDREERIAELLEQVglppsfLDRYPH---------QLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 159 MLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHE 238
Cdd:COG1124 146 RVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVAD 225
|
...
gi 559777052 239 LLN 241
Cdd:COG1124 226 LLA 228
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
15-230 |
1.17e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 137.24 E-value: 1.17e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEE 91
Cdd:cd03255 1 IELKNLSKTYgggGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVR------SGIFQvmeGRRIVEDMTVIENLRLGAF--TRNDNEVEKDIEmvfdyfpRLKERTGLAGY-------LSGGE 156
Cdd:cd03255 76 LAAfrrrhiGFVFQ---SFNLLPDLTALENVELPLLlaGVPKKERRERAE-------ELLERVGLGDRlnhypseLSGGQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKI 230
Cdd:cd03255 146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
14-250 |
5.11e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 136.53 E-value: 5.11e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEeiV 93
Cdd:COG4555 1 MIEVENLSKKYGKV-PALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLK-----PDSGSILIDGEDVRKEPRE--A 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLR-LGAFTRN-DNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:COG4555 73 RRQIGVLPDERGLYDRLTVRENIRyFAELYGLfDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELL---NNEDVKEF 248
Cdd:COG4555 153 VLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELReeiGEENLEDA 231
|
..
gi 559777052 249 YL 250
Cdd:COG4555 232 FV 233
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
30-230 |
5.33e-39 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 135.35 E-value: 5.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktedGEVTRGEITFMGERIDNKSPE-EIVRSGIFQVMEGRRIVE 108
Cdd:cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----EEPDSGTIIIDGLKLTDDKKNiNELRQKVGMVFQQFNLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRLG---AFTRNDNEVEKDIEmvfdyfpRLKERTGLA-------GYLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:cd03262 90 HLTVLENITLApikVKGMSKAEAEERAL-------ELLEKVGLAdkadaypAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 559777052 179 SMGLSPLLVKEVFSIIEKINKDqGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:cd03262 163 TSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
15-230 |
6.87e-39 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 133.68 E-value: 6.87e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGEriDNKSPEEIVR 94
Cdd:cd03230 1 IEVRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGK--DIKKEPEEVK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLgaftrndnevekdiemvfdyfprlkertglagylSGGEQQMLAIGRALMARPKMIL 174
Cdd:cd03230 73 RRIGYLPEEPSLYENLTVRENLKL----------------------------------SGGMKQRLALAQALLHDPELLI 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:cd03230 119 LDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
14-248 |
1.31e-38 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 135.12 E-value: 1.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEdgEVTRGEITFMGERIDNKSPE-EI 92
Cdd:COG1126 1 MIEIENLHKSFGDL-EVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLL---E--EPDSGTITVDGEDLTDSKKDiNK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGI---FQvmegrriveD------MTVIENLRLGAFT---RNDNEVEKDIEmvfdyfpRLKERTGLAGY-------LS 153
Cdd:COG1126 75 LRRKVgmvFQ---------QfnlfphLTVLENVTLAPIKvkkMSKAEAEERAM-------ELLERVGLADKadaypaqLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 154 GGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLD 233
Cdd:COG1126 139 GGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDL-AKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEE 217
|
250
....*....|....*...
gi 559777052 234 GTKHELLNN---EDVKEF 248
Cdd:COG1126 218 GPPEEFFENpqhERTRAF 235
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
16-229 |
1.77e-38 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 134.13 E-value: 1.77e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03225 1 ELKNLSFSYpDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----TSGEVLVDGKDLTKLSLKELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 -SG-IFQ------VMEgrrivedmTVIENLrlgAFT-RNDNEVEKDIEMVFDyfpRLKERTGLAGY-------LSGGEQQ 158
Cdd:cd03225 76 kVGlVFQnpddqfFGP--------TVEEEV---AFGlENLGLPEEEIEERVE---EALELVGLEGLrdrspftLSGGQKQ 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 159 MLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGK 229
Cdd:cd03225 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
16-234 |
4.94e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 129.09 E-value: 4.94e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEEIVR- 94
Cdd:cd03214 1 EVENLSVGYGGRT-VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-----SGEILLDGKDLASLSPKELARk 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 -SGIFQVMEgrrivedMTVIENLRlgaftrndnevEKDIEMvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03214 75 iAYVPQALE-------LLGLAHLA-----------DRPFNE-----------------LSGGERQRVLLARALAQEPPIL 119
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
15-234 |
5.95e-37 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 129.95 E-value: 5.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEeivR 94
Cdd:cd03259 1 LELKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-----RPDSGEILIDGRDVTGVPPE---R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMvfdyfPRLKERTGLAGY-------LSGGEQQMLAIGRALM 167
Cdd:cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARV-----RELLELVGLEGLlnrypheLSGGQQQRVALARALA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
12-231 |
1.64e-36 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 129.39 E-value: 1.64e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKS 88
Cdd:COG1136 2 SPLLELRNLTKSYgtgEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVLIDGQDISSLS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 PEEIVRsgifqvMEGRRI---------VEDMTVIENLRLGAFTRN--DNEVEKDIEmvfdyfpRLKERTGLAGY------ 151
Cdd:COG1136 77 ERELAR------LRRRHIgfvfqffnlLPELTALENVALPLLLAGvsRKERRERAR-------ELLERVGLGDRldhrps 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 -LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKI 230
Cdd:COG1136 144 qLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
.
gi 559777052 231 V 231
Cdd:COG1136 223 V 223
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
15-248 |
2.25e-36 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 129.16 E-value: 2.25e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEE--- 91
Cdd:cd03261 1 IELRGLTKSFGGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----DSGEVLIDGEDISGLSEAElyr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 -IVRSGI-FQvmeGRRIVEDMTVIEN--LRLGAFTRNDNE-----VEKDIEMVfdyfprlkertGLAGY-------LSGG 155
Cdd:cd03261 75 lRRRMGMlFQ---SGALFDSLTVFENvaFPLREHTRLSEEeireiVLEKLEAV-----------GLRGAedlypaeLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 156 EQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGT 235
Cdd:cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
250
....*....|....*
gi 559777052 236 KHELLN--NEDVKEF 248
Cdd:cd03261 221 PEELRAsdDPLVRQF 235
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-242 |
2.35e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 135.03 E-value: 2.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVVYD----EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFM 80
Cdd:COG1123 251 APAAAAAEPLLEVRNLSKRYPvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLR-----PTSGSILFD 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 81 GERIDNKSPEEIVRSG-----IFQVMEG----RRIVEDmTVIENLRL-GAFTRndNEVEKDIEMVFDYF---PRLKERtg 147
Cdd:COG1123 326 GKDLTKLSRRSLRELRrrvqmVFQDPYSslnpRMTVGD-IIAEPLRLhGLLSR--AERRERVAELLERVglpPDLADR-- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 lagY---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYI 224
Cdd:COG1123 401 ---YpheLSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAV 477
|
250
....*....|....*...
gi 559777052 225 MESGKIVLDGTKHELLNN 242
Cdd:COG1123 478 MYDGRIVEDGPTEEVFAN 495
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
28-251 |
2.50e-36 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 129.72 E-value: 2.50e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRRIV 107
Cdd:PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-----TGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIENL-----------------RLGAFTRNDNEVekdiemvFDYFPRLKERTGL-------AGYLSGGEQQMLAIG 163
Cdd:PRK11300 93 REMTVIENLlvaqhqqlktglfsgllKTPAFRRAESEA-------LDRAATWLERVGLlehanrqAGNLAYGQQRRLEIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
....*...
gi 559777052 244 DVKEFYLG 251
Cdd:PRK11300 246 DVIKAYLG 253
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
12-242 |
1.03e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 133.49 E-value: 1.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtEDGEVTrGEITFMGERIDNKSPE 90
Cdd:COG1123 2 TPLLEVRDLSVRYpGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLP-HGGRIS-GEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVR--SGIFQ----VMEGRRIVEDmtVIENLRLGAFTRNdnEVEKDIEmvfdyfpRLKERTGLAGY-------LSGGEQ 157
Cdd:COG1123 80 LRGRriGMVFQdpmtQLNPVTVGDQ--IAEALENLGLSRA--EARARVL-------ELLEAVGLERRldryphqLSGGQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:COG1123 149 QRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPE 228
|
....*
gi 559777052 238 ELLNN 242
Cdd:COG1123 229 EILAA 233
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
15-231 |
1.26e-35 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 125.23 E-value: 1.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03216 1 LELRGITKRFGGVK-ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSFASPRDARR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGifqvmegrrivedmtvienlrlgaftrndnevekdIEMVFDyfprlkertglagyLSGGEQQMLAIGRALMARPKMIL 174
Cdd:cd03216 75 AG-----------------------------------IAMVYQ--------------LSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIV 231
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
15-229 |
1.62e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 125.38 E-value: 1.62e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERID---NKSPEE 91
Cdd:cd03229 1 LELKNVSKRYGQKT-VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-----EPDSGSILIDGEDLTdleDELPPL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVRSG-IFQvmEGRrIVEDMTVIENLRLGaftrndnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRALMARP 170
Cdd:cd03229 75 RRRIGmVFQ--DFA-LFPHLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 171 KMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGK 229
Cdd:cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
15-230 |
1.97e-35 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 126.08 E-value: 1.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:COG4619 1 LELEGLSFRVGGKPI-LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLD-----PPTSGEIYLDGKPLSAMPPPEWRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 --------SGIFqvmegrriveDMTVIENLRLGAFTRNDNEVEKDIEMVFDYF---PRLKERTglAGYLSGGEQQMLAIG 163
Cdd:COG4619 75 qvayvpqePALW----------GGTVRDNLPFPFQLRERKFDRERALELLERLglpPDILDKP--VERLSGGERQRLALI 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
16-229 |
2.05e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 124.28 E-value: 2.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEiVRS 95
Cdd:cd00267 1 EIENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAKLPLEE-LRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 96 GIFQVMEgrrivedmtvienlrlgaftrndnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMILL 175
Cdd:cd00267 74 RIGYVPQ-------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 559777052 176 DEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFALHAADYGYIMESGK 229
Cdd:cd00267 105 DEPTSGLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
11-242 |
2.43e-35 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 129.45 E-value: 2.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPE 90
Cdd:COG3842 2 AMPALELENVSKRYGDVT-ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFE-----TPDSGRILLDGRDVTGLPPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 E----IVrsgiFQvmegrriveD------MTVIEN----LRLGAFTRndNEVEKDI-EMVfdyfprlkERTGLAGY---- 151
Cdd:COG3842 76 KrnvgMV----FQ---------DyalfphLTVAENvafgLRMRGVPK--AEIRARVaELL--------ELVGLEGLadry 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 ---LSGGEQQMLAIGRALMARPKMILLDEPsmgLSPL-------LVKEVFSIIekinKDQGITMLLV-----EqnanfAL 216
Cdd:COG3842 133 phqLSGGQQQRVALARALAPEPRVLLLDEP---LSALdaklreeMREELRRLQ----RELGITFIYVthdqeE-----AL 200
|
250 260
....*....|....*....|....*.
gi 559777052 217 HAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:COG3842 201 ALADRIAVMNDGRIEQVGTPEEIYER 226
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
15-239 |
3.57e-35 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 125.76 E-value: 3.57e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEI-V 93
Cdd:cd03260 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLeL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGI---FQvmegRRIVEDMTVIENLRLGAFTRN-------DNEVEKDIEMVfDYFPRLKERTGlAGYLSGGEQQMLAIG 163
Cdd:cd03260 80 RRRVgmvFQ----KPNPFPGSIYDNVAYGLRLHGiklkeelDERVEEALRKA-ALWDEVKDRLH-ALGLSGGQQQRLCLA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
10-249 |
6.61e-35 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 125.59 E-value: 6.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSP 89
Cdd:COG1121 2 MMMPAIELENLTVSYGGR-PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLP-----PTSGTVRLFGKPPRRARR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 -------------------EEIVRSGIFQvmegrrivedmtvienlRLGAFTRNDnevEKDIEMVFDYFprlkERTGLAG 150
Cdd:COG1121 76 rigyvpqraevdwdfpitvRDVVLMGRYG-----------------RRGLFRRPS---RADREAVDEAL----ERVGLED 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 151 Y-------LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGY 223
Cdd:COG1121 132 LadrpigeLSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRR-EGKTILVVTHDLGAVREYFDRVL 210
|
250 260
....*....|....*....|....*.
gi 559777052 224 IMeSGKIVLDGTKHELLNNEDVKEFY 249
Cdd:COG1121 211 LL-NRGLVAHGPPEEVLTPENLSRAY 235
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
15-239 |
2.96e-34 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 123.38 E-value: 2.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVI-LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIdnKSPEEIV 93
Cdd:cd03263 1 LQIRNLTKTYKKGTkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSI--RTDRKAA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLRLgaFTR----NDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMAR 169
Cdd:cd03263 74 RQSLGYCPQFDALFDELTVREHLRF--YARlkglPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 170 PKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
17-239 |
5.59e-34 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 122.48 E-value: 5.59e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEeiVRSG 96
Cdd:cd03265 3 VENLVKKYGDFEAV-RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVREPRE--VRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 97 IFQVMEGRRIVEDMTVIENL----RLGAFTRNdnEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKM 172
Cdd:cd03265 75 IGIVFQDLSVDDELTGWENLyihaRLYGVPGA--ERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 173 ILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
10-208 |
2.95e-33 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 121.74 E-value: 2.95e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDN 86
Cdd:COG1116 3 AAAPALELRGVSKRFptgGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEK-----PTSGEVLVDGKPVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 87 KSPEeivRSGIFQvmegrrivED-----MTVIENLRLGAFTRNDNEVEKDiEMVFDYFprlkERTGLAGY-------LSG 154
Cdd:COG1116 78 PGPD---RGVVFQ--------EPallpwLTVLDNVALGLELRGVPKAERR-ERARELL----ELVGLAGFedayphqLSG 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPsmglspllvkevFS------------IIEKINKDQGITMLLV 208
Cdd:COG1116 142 GMRQRVAIARALANDPEVLLMDEP------------FGaldaltrerlqdELLRLWQETGKTVLFV 195
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
11-208 |
6.90e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 125.52 E-value: 6.90e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:COG1129 1 AEPLLEMRGISKSFGGV-KALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQ-----PDSGEILLDGEPVRFRSPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGIFQVMEGRRIVEDMTVIENLRLGAFTR-----NDNEVEKDIEMVFDYF-PRLKERTgLAGYLSGGEQQMLAIGR 164
Cdd:COG1129 75 DAQAAGIAIIHQELNLVPNLSVAENIFLGREPRrggliDWRAMRRRARELLARLgLDIDPDT-PVGDLSVAQQQLVEIAR 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLV 208
Cdd:COG1129 154 ALSRDARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYI 196
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
19-236 |
1.30e-32 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 119.00 E-value: 1.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 19 NIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEI--VRSG 96
Cdd:COG2884 6 NVSKRYPGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEER-----PTSGQVLVNGQDLSRLKRREIpyLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 97 I---FQvmeGRRIVEDMTVIENLRLG--AFTRNDNEVEKDIEMVFDYFprlkertGLAGY-------LSGGEQQMLAIGR 164
Cdd:COG2884 81 IgvvFQ---DFRLLPDRTVYENVALPlrVTGKSRKEIRRRVREVLDLV-------GLSDKakalpheLSGGEQQRVAIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTK 236
Cdd:COG2884 151 ALVNRPELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVRDEAR 221
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
16-221 |
1.53e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 118.79 E-value: 1.53e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNK-------- 87
Cdd:cd03235 1 EVEDLTVSYGGHP-VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----TSGSIRVFGKPLEKErkrigyvp 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 88 -----------SPEEIVRSGIFQvmegrrivedmtvienlRLGAFTRNDNEVEKDIEmvfdyfpRLKERTGLAGY----- 151
Cdd:cd03235 75 qrrsidrdfpiSVRDVVLMGLYG-----------------HKGLFRRLSKADKAKVD-------EALERVGLSELadrqi 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 152 --LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDqGITMLLVEQNANFALHAADY 221
Cdd:cd03235 131 geLSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDR 201
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
14-231 |
3.42e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.99 E-value: 3.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDE---VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:cd03257 1 LLEVKNLSVSFPTgggSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKLSRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 --EIVRSGI---FQ---------------VMEGRRIVEDMTVIENLRLGAFtRNDNEVEKDIEmVFDYFPRlkErtglag 150
Cdd:cd03257 76 lrKIRRKEIqmvFQdpmsslnprmtigeqIAEPLRIHGKLSKKEARKEAVL-LLLVGVGLPEE-VLNRYPH--E------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 151 yLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:cd03257 146 -LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
.
gi 559777052 231 V 231
Cdd:cd03257 225 V 225
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
15-251 |
1.61e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 116.39 E-value: 1.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLrgvSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEivR 94
Cdd:COG3840 2 LRLDDLTYRYGDFPLRF---DLTIAAGERVAILGPSGAGKSTLLNLIAGFL-----PPDSGRILWNGQDLTALPPAE--R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 --SGIFQvmegrrivED-----MTVIENLRLG---AFTRNDNEVEKDIEMVfdyfprlkERTGLAGY-------LSGGEQ 157
Cdd:COG3840 72 pvSMLFQ--------ENnlfphLTVAQNIGLGlrpGLKLTAEQRAQVEQAL--------ERVGLAGLldrlpgqLSGGQR 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRAL-MARPkMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTK 236
Cdd:COG3840 136 QRVALARCLvRKRP-ILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPT 214
|
250
....*....|....*..
gi 559777052 237 HELLNNEDVKEF--YLG 251
Cdd:COG3840 215 AALLDGEPPPALaaYLG 231
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
31-178 |
2.44e-31 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 113.51 E-value: 2.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIdNKSPEEIVRSGIFQVMEGRRIVEDM 110
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP-----TEGTILLDGQDL-TDDERKSLRKEIGYVFQDPQLFPRL 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 111 TVIENLRLGA--FTRNDNEVEKDIEMVFDYFPR---LKERTGLAGY-LSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:pfam00005 75 TVRENLRLGLllKGLSKREKDARAEEALEKLGLgdlADRPVGERPGtLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
30-253 |
3.75e-31 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 115.76 E-value: 3.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEitfmgERIDNKSPEEIVRSGIFQVMEGRRIVED 109
Cdd:PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD-----EDISLLPLHARARRGIGYLPQEASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGAFTRND--NEVEKD-IEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:PRK10895 93 LSVYDNLMAVLQIRDDlsAEQREDrANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 187 VKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFYLGGG 253
Cdd:PRK10895 173 VIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGED 238
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
15-234 |
4.78e-31 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 115.44 E-value: 4.78e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkTEDGEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:TIGR01978 1 LKIKDLHVSVEDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG---HPSYEVTSGTILFKGQDLLELEPDERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMvFDYFPRLKERTGLAGY------------LSGGEQQMLAI 162
Cdd:TIGR01978 77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDL-LDFEKLLKEKLALLDMdeeflnrsvnegFSGGEKKRNEI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 163 GRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNAN-FALHAADYGYIMESGKIVLDG 234
Cdd:TIGR01978 156 LQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL-REPDRSFLIITHYQRlLNYIKPDYVHVLLDGRIVKSG 227
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
14-182 |
1.45e-30 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 113.34 E-value: 1.45e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDnkSPEEIV 93
Cdd:COG4133 2 MLEAENLSCRRGER-LLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLP-----PSAGEVLWNGEPIR--DAREDY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYF--PRLKERtgLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:COG4133 74 RRRLAYLGHADGLKPELTVRENLRFWAALYGLRADREAIDEALEAVglAGLADL--PVRQLSAGQKRRVALARLLLSPAP 151
|
170
....*....|.
gi 559777052 172 MILLDEPSMGL 182
Cdd:COG4133 152 LWLLDEPFTAL 162
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
29-243 |
2.36e-30 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 119.55 E-value: 2.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEiVRSGIFQVMEGRRIVE 108
Cdd:COG2274 489 PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLY-----EPTSGRILIDGIDLRQIDPAS-LRRQIGVVLQDVFLFS 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DmTVIENLRLGAFTRNDNEVEKDIEM--VFDYFPRLKErtglaGY----------LSGGEQQMLAIGRALMARPKMILLD 176
Cdd:COG2274 563 G-TIRENITLGDPDATDEEIIEAARLagLHDFIEALPM-----GYdtvvgeggsnLSGGQRQRLAIARALLRNPRILILD 636
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 177 EPSMGLSPLLVKEVFSIIEKInkDQGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:COG2274 637 EATSALDAETEAIILENLRRL--LKGRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEELLARK 700
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
15-231 |
6.42e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 111.79 E-value: 6.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEE 91
Cdd:cd03293 1 LEVRNVSKTYgggGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTGPGPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVrsgIFQvmegrrivED-----MTVIENLRLGA-FTRNDNEVEKDIEMvfdyfpRLKERTGLAGY-------LSGGEQQ 158
Cdd:cd03293 76 GY---VFQ--------QDallpwLTVLDNVALGLeLQGVPKAEARERAE------ELLELVGLSGFenayphqLSGGMRQ 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 159 MLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMES--GKIV 231
Cdd:cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
30-234 |
8.48e-30 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 111.15 E-value: 8.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPeeiVRSGIFQVMEGRRIVED 109
Cdd:cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----DSGEITFDGKSYQKNIE---ALRRIGALIEAPGFYPN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGA--FTRNDNEVEKDIEMVfdyfpRLKERTGL-AGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:cd03268 87 LTARENLRLLArlLGIRKKRIDEVLDVV-----GLKDSAKKkVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 187 VKEVFSIIEKInKDQGITMLL-------VEQnanfalhAADYGYIMESGKIVLDG 234
Cdd:cd03268 162 IKELRELILSL-RDQGITVLIsshllseIQK-------VADRIGIINKGKLIEEG 208
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-233 |
1.80e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 112.10 E-value: 1.80e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY-----DEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSP 89
Cdd:COG1101 2 LELKNLSKTFnpgtvNEKR-ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLP-----PDSGSILIDGKDVTKLPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEIVR--SGIFQ-VMEGrrIVEDMTVIENLRLgAFTR----------NDNEVE------KDIEMVFDYfpRLKERTGLag 150
Cdd:COG1101 76 YKRAKyiGRVFQdPMMG--TAPSMTIEENLAL-AYRRgkrrglrrglTKKRRElfrellATLGLGLEN--RLDTKVGL-- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 151 yLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALhaaDYG---YIMES 227
Cdd:COG1101 149 -LSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQAL---DYGnrlIMMHE 224
|
....*.
gi 559777052 228 GKIVLD 233
Cdd:COG1101 225 GRIILD 230
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
10-243 |
2.87e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 116.01 E-value: 2.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSP 89
Cdd:COG4988 332 AGPPSIELEDVSFSYPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFL-----PPYSGSILINGVDLSDLDP 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEI------V--RSGIFQvmegrrivedMTVIENLRLGAFTRNDNEVEKDIEMVF--DYFPRLKE----RTGLAGY-LSG 154
Cdd:COG4988 407 ASWrrqiawVpqNPYLFA----------GTIRENLRLGRPDASDEELEAALEAAGldEFVAALPDgldtPLGEGGRgLSG 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANfALHAADYGYIMESGKIVLDG 234
Cdd:COG4988 477 GQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLA-LLAQADRILVLDDGRIVEQG 553
|
....*....
gi 559777052 235 TKHELLNNE 243
Cdd:COG4988 554 THEELLAKN 562
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
30-248 |
8.90e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 109.41 E-value: 8.90e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDnkspEEIVRSGIFQVMEGRRIVED 109
Cdd:PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD----ERLIRQEAGMVFQQFYLFPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGAF-TRNDNEVEKDiEMVFDYFPR--LKERTG-LAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPL 185
Cdd:PRK09493 92 LTALENVMFGPLrVRGASKEEAE-KQARELLAKvgLAERAHhYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 186 LVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN---EDVKEF 248
Cdd:PRK09493 171 LRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNppsQRLQEF 235
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
10-243 |
1.19e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 114.09 E-value: 1.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKS 88
Cdd:COG4987 329 PGGPSLELEDVSFRYpGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFL-----DPQSGSITLGGVDLRDLD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 PEEIV--------RSGIFqvmegrriveDMTVIENLRLGAFTRNDNEVEKDIEMV--FDYFPRLKE----RTGLAGY-LS 153
Cdd:COG4987 404 EDDLRrriavvpqRPHLF----------DTTLRENLRLARPDATDEELWAALERVglGDWLAALPDgldtWLGEGGRrLS 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 154 GGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANfALHAADYGYIMESGKIVLD 233
Cdd:COG4987 474 GGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRLA-GLERMDRILVLEDGRIVEQ 550
|
250
....*....|
gi 559777052 234 GTKHELLNNE 243
Cdd:COG4987 551 GTHEELLAQN 560
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
11-208 |
1.45e-28 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 107.13 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVvydevILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:cd03215 1 GEPVLEVRGLSV-----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRRSPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGIFQVMEGRR---IVEDMTVIENLRLGAFtrndnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRALM 167
Cdd:cd03215 71 DAIRAGIAYVPEDRKregLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWLA 120
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLV 208
Cdd:cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLI 160
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
15-236 |
1.62e-28 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 107.61 E-value: 1.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEDGEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03217 1 LEIKDLHVSVGGK-EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH---PKYEVTEGEILFKGEDITDLPPEERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFqvMEGRRIVEdmtvIENLRLGAFTRNDNEvekdiemvfdyfprlkertGlagyLSGGEQQMLAIGRALMARPKMIL 174
Cdd:cd03217 77 LGIF--LAFQYPPE----IPGVKNADFLRYVNE-------------------G----FSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALH-AADYGYIMESGKIVLDGTK 236
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYiKPDRVHVLYDGRIVKSGDK 189
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
12-249 |
1.77e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.02 E-value: 1.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLL-KTedgevTRGEITFMGERIDNKSPE 90
Cdd:COG1119 1 DPLLELRNVTVRRGGKT-ILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPT-----YGNDVRLFGERRGGEDVW 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRS-GIFQVMEGRRIVEDMTVIENLRLGAF---TRNDNEVEKDIEMVFdyfpRLKERTGLA-------GYLSGGEQQM 159
Cdd:COG1119 75 ELRKRiGLVSPALQLRFPRDETVLDVVLSGFFdsiGLYREPTDEQRERAR----ELLELLGLAhladrpfGTLSQGEQRR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 160 LAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLV-----EQNANFAlHAAdygyIMESGKIVLDG 234
Cdd:COG1119 151 VLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVthhveEIPPGIT-HVL----LLKDGRVVAAG 225
|
250
....*....|....*
gi 559777052 235 TKHELLNNEDVKEFY 249
Cdd:COG1119 226 PKEEVLTSENLSEAF 240
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
15-248 |
1.86e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 108.58 E-value: 1.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEviLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEeivR 94
Cdd:cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-----SGKILLNGKDITNLPPE---K 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKD-----------IEMVFDYFPRLkertglagyLSGGEQQMLAIG 163
Cdd:cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIErkvleiaemlgIDHLLNRKPET---------LSGGEQQRVAIA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN-- 241
Cdd:cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKkp 221
|
....*...
gi 559777052 242 -NEDVKEF 248
Cdd:cd03299 222 kNEFVAEF 229
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
14-242 |
2.44e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 110.14 E-value: 2.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktEDGEVTRGEITFMGERIDNKSPE 90
Cdd:COG0444 1 LLEVRNLKVYFptrRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLL--PPPGITSGEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EI--VR----SGIFQ--------VMEGRRIVEdmtviENLRL-GAFTRNDNEvEKDIEMVfdyfprlkERTGLAG----- 150
Cdd:COG0444 79 ELrkIRgreiQMIFQdpmtslnpVMTVGDQIA-----EPLRIhGGLSKAEAR-ERAIELL--------ERVGLPDperrl 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 151 --Y---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIM 225
Cdd:COG0444 145 drYpheLSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVM 224
|
250
....*....|....*..
gi 559777052 226 ESGKIVLDGTKHELLNN 242
Cdd:COG0444 225 YAGRIVEEGPVEELFEN 241
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
16-231 |
6.14e-28 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 106.19 E-value: 6.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSpeeiVRS 95
Cdd:cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-----SSGSILLNGKPIKAKE----RRK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 96 GIFQVME--GRRIVEDmTVIENLRLGAftRNDNEVEKDIEMVFDYFP--RLKERTGLAgyLSGGEQQMLAIGRALMARPK 171
Cdd:cd03226 72 SIGYVMQdvDYQLFTD-SVREELLLGL--KELDAGNEQAETVLKDLDlyALKERHPLS--LSGGQKQRLAIAAALLSGKD 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIV 231
Cdd:cd03226 147 LLIFDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
15-208 |
1.42e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 108.62 E-value: 1.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEivR 94
Cdd:COG3839 4 LELENVSKSYGGVE-ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLE-----DPTSGEILIGGRDVTDLPPKD--R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 sGI---FQvmegrriveD------MTVIEN----LRLGAFTRndNEVEKDIEmvfdyfpRLKERTGLAGY-------LSG 154
Cdd:COG3839 76 -NIamvFQ---------SyalyphMTVYENiafpLKLRKVPK--AEIDRRVR-------EAAELLGLEDLldrkpkqLSG 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPsmgLS---PLLVKEVFSIIEKINKDQGITMLLV 208
Cdd:COG3839 137 GQRQRVALGRALVREPKVFLLDEP---LSnldAKLRVEMRAEIKRLHRRLGTTTIYV 190
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
15-231 |
2.85e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 104.64 E-value: 2.85e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEivr 94
Cdd:cd03301 1 VELENVTKRFGNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-----EPTSGRIYIGGRDVTDLPPKD--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKD-----------IEMVFDYFPRlkertglagYLSGGEQQMLAIG 163
Cdd:cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDervrevaellqIEHLLDRKPK---------QLSGGQRQRVALG 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIV 231
Cdd:cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
15-248 |
3.15e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 105.46 E-value: 3.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-----EPTSGEIFIDGEDIREQDPVELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SgIFQVMEGRRIVEDMTVIENLRL------GAFTRNDNEVEKDIEMVfdyfpRLKERTGLAGY---LSGGEQQMLAIGRA 165
Cdd:cd03295 76 K-IGYVIQQIGLFPHMTVEENIALvpkllkWPKEKIRERADELLALV-----GLDPAEFADRYpheLSGGQQQRVGVARA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN---N 242
Cdd:cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRspaN 229
|
....*.
gi 559777052 243 EDVKEF 248
Cdd:cd03295 230 DFVAEF 235
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-239 |
5.98e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 105.96 E-value: 5.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKS------ 88
Cdd:COG4152 2 LELKGLTKRFGDKT-AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAP-----DSGEVLWDGEPLDPEDrrrigy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 -PEEivrsgifqvmegRRIVEDMTVIENLRlgaftrndnevekdiemvfdYFPRLK---------------ERTGLAGY- 151
Cdd:COG4152 76 lPEE------------RGLYPKMKVGEQLV--------------------YLARLKglskaeakrradewlERLGLGDRa 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 ------LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPL---LVKEVfsIIEKinKDQGIT-------MLLVEQnanfa 215
Cdd:COG4152 124 nkkveeLSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVnveLLKDV--IREL--AAKGTTvifsshqMELVEE----- 194
|
250 260
....*....|....*....|....
gi 559777052 216 LhaADYGYIMESGKIVLDGTKHEL 239
Cdd:COG4152 195 L--CDRIVIINKGRKVLSGSVDEI 216
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
30-242 |
7.83e-27 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 104.83 E-value: 7.83e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEI--VRSGIFQVMEGRRIV 107
Cdd:PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIrqLRQHVGFVFQNFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIENLRLGAFTRNDNEVEKDIEMVfdyfPRLKERTGLAG-------YLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:PRK11264 98 PHRTVLENIIEGPVIVKGEPKEEATARA----RELLAKVGLAGketsyprRLSGGQQQRVAIARALAMRPEVILFDEPTS 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 181 GLSPLLVKEVFSIIEKINKDQGiTMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK11264 174 ALDPELVGEVLNTIRQLAQEKR-TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
27-234 |
1.13e-26 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 103.60 E-value: 1.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 27 VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRgeitfmgERID-NKSPEEiVRSGIFQVMEGRR 105
Cdd:cd03266 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV-------DGFDvVKEPAE-ARRRLGFVSDSTG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 IVEDMTVIENLRL--GAFTRNDNEVEKDIEMVFDYF---PRLKERTglaGYLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:cd03266 89 LYDRLTARENLEYfaGLYGLKGDELTARLEELADRLgmeELLDRRV---GGFSTGMRQKVAIARALVHDPPVLLLDEPTT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 559777052 181 GLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03266 166 GLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
15-242 |
3.21e-26 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 102.70 E-value: 3.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktedGEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:cd03300 1 IELENVSKFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----ETPTSGEILLDGKDITNLPPHKRPV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQvmeGRRIVEDMTVIEN----LRLGAFTRND--NEVEKDIEMVfdyfprlkertGLAGY-------LSGGEQQMLA 161
Cdd:cd03300 75 NTVFQ---NYALFPHLTVFENiafgLRLKKLPKAEikERVAEALDLV-----------QLEGYanrkpsqLSGGQQQRVA 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 162 IGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220
|
.
gi 559777052 242 N 242
Cdd:cd03300 221 E 221
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
15-237 |
3.44e-26 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 102.79 E-value: 3.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDeVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISgLLktedgEVTR-GEITFMGERID---NKSPE 90
Cdd:PRK11124 3 IQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-LL-----EMPRsGTLNIAGNHFDfskTPSDK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EI--VRSGIFQVMEGRRIVEDMTVIENL-----RLGAFTRNDNEVEKDiemvfdyfpRLKERTGLAGY-------LSGGE 156
Cdd:PRK11124 76 AIreLRRNVGMVFQQYNLWPHLTVQQNLieapcRVLGLSKDQALARAE---------KLLERLRLKPYadrfplhLSGGQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTK 236
Cdd:PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
.
gi 559777052 237 H 237
Cdd:PRK11124 226 S 226
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
15-250 |
5.56e-26 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 102.01 E-value: 5.56e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISgLLKTEDGevtrGEITFMGERID---NKSPEE 91
Cdd:COG4161 3 IQLKNINCFYGSH-QALFDINLECPSGETLVLLGPSGAGKSSLLRVLN-LLETPDS----GQLNIAGHQFDfsqKPSEKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 I--VRSGIFQVMEGRRIVEDMTVIENL-----RLGAFTRNDnEVEKDIEmvfdyfprLKERTGLAGY-------LSGGEQ 157
Cdd:COG4161 77 IrlLRQKVGMVFQQYNLWPHLTVMENLieapcKVLGLSKEQ-AREKAMK--------LLARLRLTDKadrfplhLSGGQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTkH 237
Cdd:COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-A 225
|
250
....*....|....*
gi 559777052 238 ELLNNEDVKEF--YL 250
Cdd:COG4161 226 SHFTQPQTEAFahYL 240
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
11-208 |
6.62e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 105.88 E-value: 6.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPE 90
Cdd:COG3845 2 MPPALELRGITKRFGGVV-ANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQ-----PDSGEILIDGKPVRIRSPR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGI---FQ-VMegrrIVEDMTVIENLRLGA-----FTRNDNEVEKDIEmvfdyfpRLKERTGLA-------GYLSG 154
Cdd:COG3845 76 DAIALGIgmvHQhFM----LVPNLTVAENIVLGLeptkgGRLDRKAARARIR-------ELSERYGLDvdpdakvEDLSV 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLV 208
Cdd:COG3845 145 GEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFI 197
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
14-249 |
7.59e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 102.12 E-value: 7.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIV 93
Cdd:COG4559 1 MLEAENLSVRLGGRTL-LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTP-----SSGEVRLNGRPLAAWSPWELA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RsgifqvmegRRIVedM----------TVIENLRLG--AFTRNDNEVEKDIEMVFdyfprlkERTGLAGY-------LSG 154
Cdd:COG4559 75 R---------RRAV--LpqhsslafpfTVEEVVALGraPHGSSAAQDRQIVREAL-------ALVGLAHLagrsyqtLSG 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 155 GEQQ--MLAigRAL-------MARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIM 225
Cdd:COG4559 137 GEQQrvQLA--RVLaqlwepvDGGPRWLFLDEPTSALDLAHQHAVLRLARQL-ARRGGGVVAVLHDLNLAAQYADRILLL 213
|
250 260
....*....|....*....|....
gi 559777052 226 ESGKIVLDGTKHELLNNEDVKEFY 249
Cdd:COG4559 214 HQGRLVAQGTPEEVLTDELLERVY 237
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
15-242 |
8.28e-26 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 104.07 E-value: 8.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERID-NKSPEEiv 93
Cdd:COG1118 3 IEVRNISKRFGSFTL-LDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETP-----DSGRIVLNGRDLFtNLPPRE-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 rsgifqvmegRRI--V-------EDMTVIENLrlgAF-----TRNDNEVEKDIEmvfdyfpRLKERTGLAGY-------L 152
Cdd:COG1118 75 ----------RRVgfVfqhyalfPHMTVAENI---AFglrvrPPSKAEIRARVE-------ELLELVQLEGLadrypsqL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 153 SGGEQQMLAIGRALMARPKMILLDEPsMG-----LSPLLVKEVFSIIEkinkDQGITMLLVEQNANFALHAADYGYIMES 227
Cdd:COG1118 135 SGGQRQRVALARALAVEPEVLLLDEP-FGaldakVRKELRRWLRRLHD----ELGGTTVFVTHDQEEALELADRVVVMNQ 209
|
250
....*....|....*
gi 559777052 228 GKIVLDGTKHELLNN 242
Cdd:COG1118 210 GRIEQVGTPDEVYDR 224
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
15-234 |
1.02e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 100.82 E-value: 1.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitfmgeRIDNKSPEEIVR 94
Cdd:cd03269 1 LEVENVTKRFGRVT-ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV----------LFDGKPLDIAAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDN--EVEKDIEmvfdyfpRLKERTGLAGY-------LSGGEQQMLAIGRA 165
Cdd:cd03269 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKkeEARRRID-------EWLERLELSEYankrveeLSKGNQQKVQFIAA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
31-249 |
1.31e-25 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 101.63 E-value: 1.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEIVRSG-----IFQVMEgrr 105
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRantgyIFQQFN--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 IVEDMTVIENLRLGA-----FTRNdnevekdiemVFDYFPRLKE--------RTGLAGY-------LSGGEQQMLAIGRA 165
Cdd:PRK09984 97 LVNRLSVLENVLIGAlgstpFWRT----------CFSWFTREQKqralqaltRVGMVHFahqrvstLSGGQQQRVAIARA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHElLNNEDV 245
Cdd:PRK09984 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ-FDNERF 245
|
....
gi 559777052 246 KEFY 249
Cdd:PRK09984 246 DHLY 249
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-240 |
1.31e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 105.10 E-value: 1.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVVYdevilVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERI 84
Cdd:COG1129 247 KRAAAPGEVVLEVEGLSVGG-----VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADP-----ADSGEIRLDGKPV 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEIVRSGIFQVMEGRR---IVEDMTVIENL---RLGAFTRN---DNEVEKdiEMVFDYFPRLKERTG----LAGY 151
Cdd:COG1129 317 RIRSPRDAIRAGIAYVPEDRKgegLVLDLSIRENItlaSLDRLSRGgllDRRRER--ALAEEYIKRLRIKTPspeqPVGN 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGlspllV-----KEVFSIIEKInKDQGITMLLV-----EqnanfALHAADY 221
Cdd:COG1129 395 LSGGNQQKVVLAKWLATDPKVLILDEPTRG-----IdvgakAEIYRLIREL-AAEGKAVIVIsselpE-----LLGLSDR 463
|
250 260
....*....|....*....|....
gi 559777052 222 GYIMESGKIV--LDG---TKHELL 240
Cdd:COG1129 464 ILVMREGRIVgeLDReeaTEEAIM 487
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
15-229 |
1.43e-25 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 98.99 E-value: 1.43e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIV 93
Cdd:cd03228 1 IEFKNVSFSYpGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-----DPTSGEILIDGVDLRDLDLESLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 R--------SGIFqvmegrriveDMTVIENLrlgaftrndnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRA 165
Cdd:cd03228 76 KniayvpqdPFLF----------SGTIRENI-----------------------------------LSGGQRQRIAIARA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKInkDQGITMLLVEQNANfALHAADYGYIMESGK 229
Cdd:cd03228 111 LLRDPPILILDEATSALDPETEALILEALRAL--AKGKTVIVIAHRLS-TIRDADRIIVLDDGR 171
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
13-249 |
2.07e-25 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 101.00 E-value: 2.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEI 92
Cdd:PRK13548 1 AMLEARNLSVRLGGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-----DSGEVRLNGRPLADWSPAEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRsgifqvmegRRIVE--------DMTVIENLRLGAFTRNDNEVEKD--IEMVFdyfprlkERTGLAGY-------LSGG 155
Cdd:PRK13548 75 AR---------RRAVLpqhsslsfPFTVEEVVAMGRAPHGLSRAEDDalVAAAL-------AQVDLAHLagrdypqLSGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 156 EQQMLAIGRALM------ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGK 229
Cdd:PRK13548 139 EQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGR 218
|
250 260
....*....|....*....|
gi 559777052 230 IVLDGTKHELLNNEDVKEFY 249
Cdd:PRK13548 219 LVADGTPAEVLTPETLRRVY 238
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
34-254 |
2.10e-25 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 101.38 E-value: 2.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEEI--VRSGIFQVMEGRRIVEDMT 111
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-----HGEILFDGENIPAMSRSRLytVRKRMSMLFQSGALFTDMN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 112 VIENLR--LGAFTRNDNEVEKDIEMVfdyfpRLkERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:PRK11831 101 VFDNVAypLREHTQLPAPLLHSTVMM-----KL-EAVGLRGAaklmpseLSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 183 SPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNED--VKEFYLGGGD 254
Cdd:PRK11831 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDprVRQFLDGIAD 248
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
31-242 |
2.36e-25 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 100.49 E-value: 2.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEivrSGIFQVMEGRRIVEDM 110
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----DSGTILFGGEDATDVPVQE---RNVGFVFQHYALFRHM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGAFTRNDNEV--EKDIEMVFDYFPRLKERTGLA----GYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSP 184
Cdd:cd03296 90 TVFDNVAFGLRVKPRSERppEAEIRAKVHELLKLVQLDWLAdrypAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 185 LLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:cd03296 170 KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
14-242 |
8.08e-25 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 98.81 E-value: 8.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEV---ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPE 90
Cdd:cd03258 1 MIELKNVSKVFGDTggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----TSGSVLVDGTDLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIV--RSGIFQVMEGRRIVEDMTVIEN----LRLGAFTRNdnEVEKDIEmvfdyfpRLKERTGLAG----Y---LSGGEQ 157
Cdd:cd03258 76 ELRkaRRRIGMIFQHFNLLSSRTVFENvalpLEIAGVPKA--EIEERVL-------ELLELVGLEDkadaYpaqLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVE 226
|
....*
gi 559777052 238 ELLNN 242
Cdd:cd03258 227 EVFAN 231
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
15-208 |
1.11e-24 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 97.94 E-value: 1.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktEDGEVTRGEITFMGERIDNKSPEEiVR 94
Cdd:COG4136 2 LSLENLTITLGGRPLL-APLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTL--SPAFSASGEVLLNGRRLTALPAEQ-RR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGI-FQvmegrriveD------MTVIENLRLG---AFTRND--NEVEKDIEMVfdyfprlkertGLAGY-------LSGG 155
Cdd:COG4136 78 IGIlFQ---------DdllfphLSVGENLAFAlppTIGRAQrrARVEQALEEA-----------GLAGFadrdpatLSGG 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 156 EQQMLAIGRALMARPKMILLDEPSMGLSPLL---VKE-VFSIIekinKDQGITMLLV 208
Cdd:COG4136 138 QRARVALLRALLAEPRALLLDEPFSKLDAALraqFREfVFEQI----RQRGIPALLV 190
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
14-245 |
1.13e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 99.38 E-value: 1.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERI--DNKSPEE 91
Cdd:PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----TSGEVLIKGEPIkyDKKSLLE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVRS-GI-FQVMEGRRIVEdmTVIENLRLGAFTR--NDNEVEKdiemvfdyfpRLKE---RTGLAGY-------LSGGEQ 157
Cdd:PRK13639 76 VRKTvGIvFQNPDDQLFAP--TVEEDVAFGPLNLglSKEEVEK----------RVKEalkAVGMEGFenkpphhLSGGQK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
....*...
gi 559777052 238 ELLNNEDV 245
Cdd:PRK13639 223 EVFSDIET 230
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
30-242 |
2.44e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 98.12 E-value: 2.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGE--VTRGEITFMGE-----RIDNKSPEEIVRSGIFQVME 102
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSivVNGQTINLVRDkdgqlKVADKNQLRLLRTRLTMVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 103 GRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRL----KERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PRK10619 100 HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVgideRAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 179 SMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK10619 180 TSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
7-244 |
3.26e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 101.44 E-value: 3.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 7 DIEPAEILLSVNNIEVVYDEVIL-VLRGVSLEVPKGQIVTLLGANGAGKSTTLkaisGLLkTEDGEVTRGEITFMGERID 85
Cdd:PRK11160 331 TAAADQVSLTLNNVSFTYPDQPQpVLKGLSLQIKAGEKVALLGRTGCGKSTLL----QLL-TRAWDPQQGEILLNGQPIA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 86 NKSpEEIVRSGIfQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMV-FDYFprLKERTGLAGY-------LSGGEQ 157
Cdd:PRK11160 406 DYS-EAALRQAI-SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVgLEKL--LEDDKGLNAWlgeggrqLSGGEQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANfALHAADYGYIMESGKIVLDGTKH 237
Cdd:PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRLT-GLEQFDRICVMDNGQIIEQGTHQ 558
|
....*..
gi 559777052 238 ELLNNED 244
Cdd:PRK11160 559 ELLAQQG 565
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-208 |
1.33e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 99.74 E-value: 1.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 2 SELARDIEPAEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmG 81
Cdd:TIGR02868 322 APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLD-----G 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 82 ERIDNKSPEEIVRsgIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMV--FDYFPRLKErtGL-------AGYL 152
Cdd:TIGR02868 397 VPVSSLDQDEVRR--RVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVglADWLRALPD--GLdtvlgegGARL 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 153 SGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInkDQGITMLLV 208
Cdd:TIGR02868 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLI 526
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
15-233 |
2.87e-23 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 95.13 E-value: 2.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmgeridnKSPEEIVR 94
Cdd:PRK11247 13 LLLNAVSKRYGERT-VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----------TAPLAEAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVfdyfpRLKERTG-LAGYLSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----GLADRANeWPAALSGGQKQRVALARALIHRPGLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLD 233
Cdd:PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
34-244 |
3.53e-23 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 96.72 E-value: 3.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGE-VTRGEITFMGERIDNKSPEEIVRSGIFQvmeGRRIVEDMTV 112
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEiVLNGRTLFDSRKGIFLPPEKRRIGYVFQ---EARLFPHLSV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 113 IENLRLG-----AFTRNDNEvEKDIEMVfdYFPRLKERtgLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLV 187
Cdd:TIGR02142 93 RGNLRYGmkrarPSERRISF-ERVIELL--GIGHLLGR--LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 188 KEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNED 244
Cdd:TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
31-208 |
3.84e-23 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 93.85 E-value: 3.84e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEI--VRSGIFQVMEGRRIVE 108
Cdd:TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----SRGQVRIAGEDVNRLRGRQLplLRRRIGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIEN--LRLGAFTRNDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:TIGR02673 93 DRTVYENvaLPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
|
170 180
....*....|....*....|..
gi 559777052 187 VKEVFSIIEKINKdQGITMLLV 208
Cdd:TIGR02673 173 SERILDLLKRLNK-RGTTVIVA 193
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
34-234 |
5.14e-23 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 93.51 E-value: 5.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPkGQIVTLLGANGAGKSTTLKAISGLLKTEDGE-VTRGEITFMGERIDNKSPEEIVRSGIFQVMEgrrIVEDMTV 112
Cdd:cd03297 17 IDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTiVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA---LFPHLNV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 113 IENLRLGAFTRNDNEVEKDIEMVFDYF--PRLKERTglAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEV 190
Cdd:cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLglDHLLNRY--PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 559777052 191 FSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03297 171 LPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
14-245 |
6.47e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 94.87 E-value: 6.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIV 93
Cdd:PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----TSGSVLIRGEPITKENIREVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 R--SGIFQVMEGRriVEDMTVIENLRLGAFTRNDNE--VEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMAR 169
Cdd:PRK13652 78 KfvGLVFQNPDDQ--IFSPTVEQDIAFGPINLGLDEetVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAME 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 170 PKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDV 245
Cdd:PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
34-244 |
8.80e-23 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 95.55 E-value: 8.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVT-RGEITFMGERidnkspeeivrsGIFQVMEGRRI--V--E 108
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRlGGEVLQDSAR------------GIFLPPHRRRIgyVfqE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 D-----MTVIENLRLGA-FTRNDNEVEKdiemvfdyFPRLKERTGLA-------GYLSGGEQQMLAIGRALMARPKMILL 175
Cdd:COG4148 86 ArlfphLSVRGNLLYGRkRAPRAERRIS--------FDEVVELLGIGhlldrrpATLSGGERQRVAIGRALLSSPRLLLM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 176 DEPsmgLSPLLVK---EVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNED 244
Cdd:COG4148 158 DEP---LAALDLArkaEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPD 226
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
7-230 |
9.67e-23 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 97.00 E-value: 9.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 7 DIEPAEILLSVNNIEVvydeviLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDN 86
Cdd:PRK10762 250 DKAPGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 87 KSPEEIVRSGIFQVMEGRR---IVEDMTVIENLRLGA---FTRNDNEVEKDIE-MVFDYFPRL-----KERTGLAGYLSG 154
Cdd:PRK10762 319 RSPQDGLANGIVYISEDRKrdgLVLGMSVKENMSLTAlryFSRAGGSLKHADEqQAVSDFIRLfniktPSMEQAIGLLSG 398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF-KAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-252 |
1.50e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 93.44 E-value: 1.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIdNKSPEEIVRSGIFQVMEGRRIVED 109
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI-FKMDVIELRRRVQMVFQIPNPIPN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGA----FTRNDNEVEKDIEMVFD---YFPRLKERTGL-AGYLSGGEQQMLAIGRALMARPKMILLDEPSMG 181
Cdd:PRK14247 97 LSIFENVALGLklnrLVKSKKELQERVRWALEkaqLWDEVKDRLDApAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 182 LSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN--EDVKEFYLGG 252
Cdd:PRK14247 177 LDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNprHELTEKYVTG 247
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
5-242 |
1.52e-22 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 96.77 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERI 84
Cdd:COG1132 330 AVPLPPVRGEIEFENVSFSYPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFY-----DPTSGRILIDGVDI 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEiVRSGI---FQvmegrrivE----DMTVIENLRLGAFTRNDNEVEKDIEMVF--DYFPRLKErtglaGY---- 151
Cdd:COG1132 405 RDLTLES-LRRQIgvvPQ--------DtflfSGTIRENIRYGRPDATDEEVEEAAKAAQahEFIEALPD-----GYdtvv 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 ------LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdqGITMLLVeqnanfA-----LHAAD 220
Cdd:COG1132 471 gergvnLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVI------AhrlstIRNAD 542
|
250 260
....*....|....*....|..
gi 559777052 221 YGYIMESGKIVLDGTKHELLNN 242
Cdd:COG1132 543 RILVLDDGRIVEQGTHEELLAR 564
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
14-245 |
1.64e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 93.76 E-value: 1.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRgeitfmgeridNKSPEEIV 93
Cdd:PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF-----------DGKPIDYS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIV-ED-------MTVIENLRLGAFTRN--DNEVEKDIEmvfdyfpRLKERTGLA-------GYLSGGE 156
Cdd:PRK13636 74 RKGLMKLRESVGMVfQDpdnqlfsASVYQDVSFGAVNLKlpEDEVRKRVD-------NALKRTGIEhlkdkptHCLSFGQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTK 236
Cdd:PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
|
....*....
gi 559777052 237 HELLNNEDV 245
Cdd:PRK13636 227 KEVFAEKEM 235
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
15-255 |
2.04e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 94.10 E-value: 2.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEEIVR 94
Cdd:PRK13537 8 IDFRNVEKRYGDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-----AGSISLCGEPVPSRARHARQR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIfqVMEGRRIVEDMTVIENLRLGA--FTRNDNEVEKDIEMVFDyFPRLKERT-GLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:PRK13537 82 VGV--VPQFDNLDPDFTVRENLLVFGryFGLSAAAARALVPPLLE-FAKLENKAdAKVGELSGGMKRRLTLARALVNDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 172 MILLDEPSMGLSP----LLVKEVFSIIEKinkdqGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNE---D 244
Cdd:PRK13537 159 VLVLDEPTTGLDPqarhLMWERLRSLLAR-----GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEigcD 233
|
250
....*....|.
gi 559777052 245 VKEFYlggGDE 255
Cdd:PRK13537 234 VIEIY---GPD 241
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
29-234 |
2.42e-22 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 91.95 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktEDGEVTRGEITFMGERIdnkSPEEiVRSGIFQVMEGRRIVE 108
Cdd:cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV--EGGGTTSGQILFNGQPR---KPDQ-FQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKE------RTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:cd03234 95 GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDlaltriGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 559777052 183 SPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
15-240 |
2.62e-22 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 92.44 E-value: 2.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEDGEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:COG0396 1 LEIKNLHVSVEGKE-ILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGH---PKYEVTSGSILLDGEDILELSPDERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGI---FQ---------VMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRlkertGLAGYLSGGEQQMLAI 162
Cdd:COG0396 77 AGIflaFQypveipgvsVSNFLRTALNARRGEELSAREFLKLLKEKMKELGLDEDFLDR-----YVNEGFSGGEKKRNEI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 163 GRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANF-ALHAADYGYIMESGKIVLDGTKhELL 240
Cdd:COG0396 152 LQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKL-RSPDRGILIITHYQRIlDYIKPDFVHVLVDGRIVKSGGK-ELA 228
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
15-178 |
2.90e-22 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 92.62 E-value: 2.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYD---EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEe 91
Cdd:COG4525 4 LTVRHVSVRYPgggQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFL-----APSSGEITLDGVPVTGPGAD- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 ivRSGIFQvmegrrivED-----MTVIEN----LRLGAFTRNDNEVEKDiemvfdyfpRLKERTGLAGY-------LSGG 155
Cdd:COG4525 78 --RGVVFQ--------KDallpwLNVLDNvafgLRLRGVPKAERRARAE---------ELLALVGLADFarrriwqLSGG 138
|
170 180
....*....|....*....|...
gi 559777052 156 EQQMLAIGRALMARPKMILLDEP 178
Cdd:COG4525 139 MRQRVGIARALAADPRFLLMDEP 161
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
29-242 |
4.07e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 92.84 E-value: 4.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitfMGERIDNKSPEEI--VRSG---IFQVMEG 103
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-------YVDGLDTSDEENLwdIRNKagmVFQNPDN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 104 R---RIVEDMTVI--ENLRLGAF---TRNDNEVEK-DIEMVFDYFPRLkertglagyLSGGEQQMLAIGRALMARPKMIL 174
Cdd:PRK13633 97 QivaTIVEEDVAFgpENLGIPPEeirERVDESLKKvGMYEYRRHAPHL---------LSGGQKQRVAIAGILAMRPECII 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK13633 168 FDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
31-247 |
4.69e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 92.49 E-value: 4.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIdNKSPEEIVRSG---IFQVMEGRriV 107
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREV-NAENEKWVRSKvglVFQDPDDQ--V 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIE-------NLRLGAftrndNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:PRK13647 93 FSSTVWDdvafgpvNMGLDK-----DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 181 GLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKhELLNNEDVKE 247
Cdd:PRK13647 168 YLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDEDIVE 232
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
31-248 |
1.32e-21 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 91.17 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGE---RIDNKSPEEIVRSGIFQVMEGRRIV 107
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-----EPTSGKVLIDGQdiaAMSRKELRELRRKKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIENLRLGAFTRNDNEVE---KDIEMVfdyfprlkERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:cd03294 115 PHRTVLENVAFGLEVQGVPRAEreeRAAEAL--------ELVGLEGWehkypdeLSGGMQQRVGLARALAVDPDILLMDE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 178 PSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN---EDVKEF 248
Cdd:cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNpanDYVREF 260
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
6-208 |
1.45e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.51 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEIL-LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERI 84
Cdd:TIGR02857 312 APVTAAPASsLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-----DPTEGSIAVNGVPL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEIvRSGIFQVMEGRRIVEDmTVIENLRLGAFTRNDNEVEKDIEMV-FDYFPR-----LKERTGLAGY-LSGGEQ 157
Cdd:TIGR02857 387 ADADADSW-RDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAgLDEFVAalpqgLDTPIGEGGAgLSGGQA 464
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINkdQGITMLLV 208
Cdd:TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLV 513
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
26-234 |
1.82e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 90.08 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 26 EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVRSGifqVMEGRR 105
Cdd:cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----TSGEVRVAGLVPWKRRKKFLRRIG---VVFGQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 --IVEDMTVIENLRL---------GAFTRNDNEVEK--DIEMVFDYFPRlkertglagYLSGGEQQMLAIGRALMARPKM 172
Cdd:cd03267 104 tqLWWDLPVIDSFYLlaaiydlppARFKKRLDELSEllDLEELLDTPVR---------QLSLGQRMRAEIAAALLHEPEI 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 173 ILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03267 175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
18-240 |
2.40e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.59 E-value: 2.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 18 NNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIdNKSPEEIVRSGI 97
Cdd:cd03254 6 ENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-----DPQKGQILIDGIDI-RDISRKSLRSMI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 98 FQVMEGRRIVEDmTVIENLRLGAFTRNDNEVEKDIEMV-FDYFPR---------LKERtglAGYLSGGEQQMLAIGRALM 167
Cdd:cd03254 80 GVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAgAHDFIMklpngydtvLGEN---GGNLSQGERQLLAIARAML 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdqGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELL 240
Cdd:cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
19-220 |
2.45e-21 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 89.00 E-value: 2.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 19 NIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERI----DNKSPeeIVR 94
Cdd:cd03292 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----TSGTIRVNGQDVsdlrGRAIP--YLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIEN--LRLGAFTRNDNEVEKDIEMVFDYFP-RLKERTgLAGYLSGGEQQMLAIGRALMARPK 171
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENvaFALEVTGVPPREIRKRVPAALELVGlSHKHRA-LPAELSGGEQQRVAIARAIVNSPT 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 559777052 172 MILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLveqnanfALHAAD 220
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVV-------ATHAKE 197
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
9-182 |
2.62e-21 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 92.78 E-value: 2.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKS 88
Cdd:COG3845 252 EPGEVVLEVENLSVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRP-----PASGSIRLDGEDITGLS 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 PEEIVRSGIFQVMEGRR---IVEDMTVIENLRLGAFTR---------NDNEVEKDIEMVFDyfpRLKERTG----LAGYL 152
Cdd:COG3845 327 PRERRRLGVAYIPEDRLgrgLVPDMSVAENLILGRYRRppfsrggflDRKAIRAFAEELIE---EFDVRTPgpdtPARSL 403
|
170 180 190
....*....|....*....|....*....|
gi 559777052 153 SGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:COG3845 404 SGGNQQKVILARELSRDPKLLIAAQPTRGL 433
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
30-211 |
3.49e-21 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 88.44 E-value: 3.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAIsGLLKTEDgevtRGEITFMGE---RIDNKSPEEIVRSGIFQVMEGRRI 106
Cdd:TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFD----SGQVYLNGQetpPLNSKKASKFRREKLGYLFQNFAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 VEDMTVIENLRLGAFTRNDNEVEKDIEMVfdyfpRLKERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:TIGR03608 88 IENETVEENLDLGLKYKKLSKKEKREKKK-----EALEKVGLNLKlkqkiyeLSGGEQQRVALARAILKPPPLILADEPT 162
|
170 180 190
....*....|....*....|....*....|..
gi 559777052 180 MGLSPLLVKEVFSIIEKINkDQGITMLLVEQN 211
Cdd:TIGR03608 163 GSLDPKNRDEVLDLLLELN-DEGKTIIIVTHD 193
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
35-234 |
4.90e-21 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 88.32 E-value: 4.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 35 SLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEI--TFMgeridnkSPEEIVRSGIFQvmeGRRIVEDMTV 112
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVdvTAA-------PPADRPVSMLFQ---ENNLFAHLTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 113 IENLRLGAFTR-NDNEVEKD-IEMVFdyfprlkERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDEPSMGLS 183
Cdd:cd03298 88 EQNVGLGLSPGlKLTAEDRQaIEVAL-------ARVGLAGLekrlpgeLSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 559777052 184 PLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
14-243 |
5.00e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 88.87 E-value: 5.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEviLVLRgVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEEIV 93
Cdd:PRK10771 1 MLKLTDITWLYHH--LPMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNGQDHTTTPPSRRP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQvmegrrivED-----MTVIENLRLG-----AFTRNDNEVEKDI-EMVF--DYFPRLkertglAGYLSGGEQQML 160
Cdd:PRK10771 73 VSMLFQ--------ENnlfshLTVAQNIGLGlnpglKLNAAQREKLHAIaRQMGieDLLARL------PGQLSGGQRQRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 161 AIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELL 240
Cdd:PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
...
gi 559777052 241 NNE 243
Cdd:PRK10771 219 SGK 221
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-242 |
5.07e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 89.33 E-value: 5.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDeVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdGEV-TRGEITFMGERI-DNKSPEEI 92
Cdd:PRK14258 8 IKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVrVEGRVEFFNQNIyERRVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGIFQVMEGRRIVEdMTVIENLRLGAFT---RNDNEVEKDIEMVF---DYFPRLKERTGLAGY-LSGGEQQMLAIGRA 165
Cdd:PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIvgwRPKLEIDDIVESALkdaDLWDEIKHKIHKSALdLSGGQQQRLCIARA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMES-----GKIVLDGTKHELL 240
Cdd:PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIF 244
|
..
gi 559777052 241 NN 242
Cdd:PRK14258 245 NS 246
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
30-239 |
6.49e-21 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 90.55 E-value: 6.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSpeeIVRSGIFQVMEGRRIVED 109
Cdd:PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----TEGQIFIDGEDVTHRS---IQQRDICMVFQSYALFPH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLG--AFTRNDNEVEKdiemvfdyfpRLKER---TGLAGY-------LSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK11432 93 MSLGENVGYGlkMLGVPKEERKQ----------RVKEAlelVDLAGFedryvdqISGGQQQRVALARALILKPKVLLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 178 PsmgLSPLLVKEVFSIIEKINKDQ---GITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK11432 163 P---LSNLDANLRRSMREKIRELQqqfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
15-242 |
8.19e-21 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 90.14 E-value: 8.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEdgEVTRGEITFMGERIDNKSPEE 91
Cdd:COG1135 2 IELENLSKTFptkGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLL---E--RPTSGSVLVDGVDLTALSERE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 I--VRSGI---FQ---VMEGRrivedmTVIEN----LRLGAFTRNDNE--VEKDIEMVfdyfprlkertGLAG----Y-- 151
Cdd:COG1135 77 LraARRKIgmiFQhfnLLSSR------TVAENvalpLEIAGVPKAEIRkrVAELLELV-----------GLSDkadaYps 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 -LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLL-------VEQNANfalHAAdygy 223
Cdd:COG1135 140 qLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLithemdvVRRICD---RVA---- 212
|
250
....*....|....*....
gi 559777052 224 IMESGKIVLDGTKHELLNN 242
Cdd:COG1135 213 VLENGRIVEQGPVLDVFAN 231
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
11-239 |
9.23e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 88.92 E-value: 9.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVI-LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFmgeridnkSP 89
Cdd:PRK13635 2 KEEIIRVEHISFRYPDAAtYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL--------SE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEI--VRSGIFQVME-------GRRIVEDMtvienlrlgAFTRNDNEVEKDiEMVfdyfPRLKE---RTGLAGY------ 151
Cdd:PRK13635 74 ETVwdVRRQVGMVFQnpdnqfvGATVQDDV---------AFGLENIGVPRE-EMV----ERVDQalrQVGMEDFlnreph 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 -LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALhAADYGYIMESGKI 230
Cdd:PRK13635 140 rLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEI 218
|
....*....
gi 559777052 231 VLDGTKHEL 239
Cdd:PRK13635 219 LEEGTPEEI 227
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
12-247 |
1.36e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 88.51 E-value: 1.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYD-EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPE 90
Cdd:PRK13632 5 SVMIKVENVSFSYPnSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----QSGEIKIDGITISKENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIvRSG---IFQVMEGRRI---VEDMTV--IENLRLgaftrnDNEVEKDIemVFDYfprlKERTGLAGY-------LSGG 155
Cdd:PRK13632 80 EI-RKKigiIFQNPDNQFIgatVEDDIAfgLENKKV------PPKKMKDI--IDDL----AKKVGMEDYldkepqnLSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 156 EQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKIVLDGT 235
Cdd:PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGK 225
|
250
....*....|..
gi 559777052 236 KHELLNNEDVKE 247
Cdd:PRK13632 226 PKEILNNKEILE 237
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
15-208 |
1.45e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 90.74 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkteDGEVTRGEITFMGERIDNKSPEEIVR 94
Cdd:PRK11288 5 LSFDGIGKTFPGV-KALDDISFDCRAGQVHALMGENGAGKSTLLKILSG-----NYQPDAGSILIDGQEMRFASTTAALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKD--IEMVFDYFPRLKER----TGLaGYLSGGEQQMLAIGRALMA 168
Cdd:PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRllNYEAREQLEHLGVDidpdTPL-KYLSIGQRQMVEIAKALAR 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 559777052 169 RPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLV 208
Cdd:PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIREL-RAEGRVILYV 196
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-252 |
1.58e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 87.98 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEI-VRSGIFQVMEGRRIVE 108
Cdd:PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIeVRREVGMVFQYPNPFP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIEN----LRLGAFTRNDNEVEKDIEMVFD---YFPRLKER-TGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:PRK14267 99 HLTIYDNvaigVKLNGLVKSKKELDERVEWALKkaaLWDEVKDRlNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 181 GLSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN--EDVKEFYLGG 252
Cdd:PRK14267 179 NIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENpeHELTEKYVTG 250
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
18-241 |
1.76e-20 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 87.29 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 18 NNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAisgLLKTEDgeVTRGEITFMGERIDNKSPEEiVRSGI 97
Cdd:cd03253 4 ENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRL---LFRFYD--VSSGSILIDGQDIREVTLDS-LRRAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 98 FQVMEGRRIVEDmTVIENLRLGAFTRNDNEV----------EKDIEMVFDYFPRLKERtGLagYLSGGEQQMLAIGRALM 167
Cdd:cd03253 78 GVVPQDTVLFND-TIGYNIRYGRPDATDEEVieaakaaqihDKIMRFPDGYDTIVGER-GL--KLSGGEKQRVAIARAIL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdqGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLN 241
Cdd:cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
15-234 |
2.28e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 85.44 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDE-VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEItfmgeridNKSPEEIV 93
Cdd:cd03247 1 LSINNVSFSYPEqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV--------PVSDLEKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLrlgaftrndnevekdiemvfdyfprlKERtglagyLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03247 73 LSSLISVLNQRPYLFDTTLRNNL--------------------------GRR------FSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANfALHAADYGYIMESGKIVLDG 234
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLT-GIEHMDKILFLENGKIIMQG 178
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
9-235 |
2.90e-20 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 86.72 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERID 85
Cdd:COG4181 3 SSSAPIIELRGLTKTVgtgAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLD-----RPTSGTVRLAGQDLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 86 NKSPEEI--VRS---GI----FQVMEGrrivedMTVIENLRLGAFTRNDNEVEKDIEmvfdyfpRLKERTGLA------- 149
Cdd:COG4181 78 ALDEDARarLRArhvGFvfqsFQLLPT------LTALENVMLPLELAGRRDARARAR-------ALLERVGLGhrldhyp 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 150 GYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGK 229
Cdd:COG4181 145 AQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGR 223
|
....*.
gi 559777052 230 IVLDGT 235
Cdd:COG4181 224 LVEDTA 229
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
17-234 |
4.15e-20 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 86.10 E-value: 4.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDEV-ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitfmgeRIDNKSPEEI--- 92
Cdd:cd03245 5 FRNVSFSYPNQeIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV----------LLDGTDIRQLdpa 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 -VRSGIFQVMEGRRIVEDmTVIENLRLGAFTRNDNEVEKDIEM--VFDYFPR----LKERTGLAGY-LSGGEQQMLAIGR 164
Cdd:cd03245 75 dLRRNIGYVPQDVTLFYG-TLRDNITLGAPLADDERILRAAELagVTDFVNKhpngLDLQIGERGRgLSGGQRQAVALAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANFaLHAADYGYIMESGKIVLDG 234
Cdd:cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
15-247 |
5.01e-20 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 86.61 E-value: 5.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmGERIDNKSPEEIVR 94
Cdd:PRK11231 3 LRTENLTVGYGTKR-ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG-----DKPISMLSSRQLAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIF--QVM---EG---RRIVEDMTVIENLRLGAFTRNDNE-VEKDIEMVfdYFPRLKERtgLAGYLSGGEQQMLAIGRA 165
Cdd:PRK11231 77 RLALlpQHHltpEGitvRELVAYGRSPWLSLWGRLSAEDNArVNQAMEQT--RINHLADR--RLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 166 LMARPKMILLDEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDV 245
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELN-TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLL 231
|
..
gi 559777052 246 KE 247
Cdd:PRK11231 232 RT 233
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
15-184 |
6.09e-20 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 85.32 E-value: 6.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGqIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIdNKSPEEIvR 94
Cdd:cd03264 1 LQLENLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----SSGTIRIDGQDV-LKQPQKL-R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVEDMTVIENLRLGAFTR--NDNEVEKDIEMVF---DYFPRLKERtglAGYLSGGEQQMLAIGRALMAR 169
Cdd:cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKgiPSKEVKARVDEVLelvNLGDRAKKK---IGSLSGGMRRRVGIAQALVGD 148
|
170
....*....|....*
gi 559777052 170 PKMILLDEPSMGLSP 184
Cdd:cd03264 149 PSILIVDEPTAGLDP 163
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
11-204 |
1.25e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 88.06 E-value: 1.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrGEITFMGERIDNKSPE 90
Cdd:PRK13549 2 MEYLLEMKNITKTFGGVK-ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGIFQVMEGRRIVEDMTVIENLRLGaftrndNEVEK----DIEMVFDYFPRLKERTGLA-------GYLSGGEQQM 159
Cdd:PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLG------NEITPggimDYDAMYLRAQKLLAQLKLDinpatpvGNLGLGQQQL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 559777052 160 LAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGIT 204
Cdd:PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIA 195
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
9-242 |
1.46e-19 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 87.82 E-value: 1.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIEVVYD----------EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtrGEIT 78
Cdd:COG4172 270 PDAPPLLEARDLKVWFPikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPSE------GEIR 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 79 FMGERIDNKSPEEI--VRSGI---FQ----VMEGRRIVEDmTVIENLRLGAFTRNDNEVEKDIEMVFdyfprlkERTGLA 149
Cdd:COG4172 344 FDGQDLDGLSRRALrpLRRRMqvvFQdpfgSLSPRMTVGQ-IIAEGLRVHGPGLSAAERRARVAEAL-------EEVGLD 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 150 G-----Y---LSGGEQQMLAIGRALMARPKMILLDEPSmglSPLLV---KEVFSIIEKINKDQGITMLL-------VEqn 211
Cdd:COG4172 416 PaarhrYpheFSGGQRQRIAIARALILEPKLLVLDEPT---SALDVsvqAQILDLLRDLQREHGLAYLFishdlavVR-- 490
|
250 260 270
....*....|....*....|....*....|.
gi 559777052 212 anfALhaADYGYIMESGKIVLDGTKHELLNN 242
Cdd:COG4172 491 ---AL--AHRVMVMKDGKVVEQGPTEQVFDA 516
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
30-238 |
1.58e-19 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 86.92 E-value: 1.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktedGEVTRGEITFMGERIDNKSPEEIVRSGIFQvmeGRRIVED 109
Cdd:PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----ETPDSGRIMLDGQDITHVPAENRHVNTVFQ---SYALFPH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIEN----LRLGAFTRNDNE--VEKDIEMVfdyfpRLKErtgLAGY----LSGGEQQMLAIGRALMARPKMILLDEPs 179
Cdd:PRK09452 101 MTVFENvafgLRMQKTPAAEITprVMEALRMV-----QLEE---FAQRkphqLSGGQQQRVAIARAVVNKPKVLLLDES- 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 180 mgLSPL---LVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHE 238
Cdd:PRK09452 172 --LSALdykLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
31-228 |
1.98e-19 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 84.44 E-value: 1.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVrsgifqVMEGRRIVEDM 110
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----TSGGVILEGKQITEPGPDRMV------VFQNYSLLPWL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGA----FTRNDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:TIGR01184 70 TVRENIALAVdrvlPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 559777052 187 VKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESG 228
Cdd:TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
31-247 |
2.07e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 85.48 E-value: 2.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEIVrsGI-FQVMEgRRIVED 109
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV--GLvFQYPE-YQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 mTVIENLRLGAFTRNDNE------VEKDIEMVFDYFPRLKERTGLAgyLSGGEQQMLAIGRALMARPKMILLDEPSMGLS 183
Cdd:PRK13637 100 -TIEKDIAFGPINLGLSEeeienrVKRAMNIVGLDYEDYKDKSPFE--LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 184 PLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKE 247
Cdd:PRK13637 177 PKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLE 240
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
16-249 |
2.23e-19 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 84.75 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 16 SVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEE---- 91
Cdd:COG4604 3 EIKNVSKRYGGK-VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLL-----PPDSGEVLVDGLDVATTPSRElakr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 --IVRSGIFQVMegrRIvedmTVIENLRLGAF-------TRNDNEVekdIEMVFDYFprlkERTGLAG-Y---LSGGEQQ 158
Cdd:COG4604 77 laILRQENHINS---RL----TVRELVAFGRFpyskgrlTAEDREI---IDEAIAYL----DLEDLADrYldeLSGGQRQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 159 mlaigRALMArpkM--------ILLDEPsmgLSPLLVK---EVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMES 227
Cdd:COG4604 143 -----RAFIA---MvlaqdtdyVLLDEP---LNNLDMKhsvQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKD 211
|
250 260
....*....|....*....|..
gi 559777052 228 GKIVLDGTKHELLNNEDVKEFY 249
Cdd:COG4604 212 GRVVAQGTPEEIITPEVLSDIY 233
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
14-245 |
2.28e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 87.41 E-value: 2.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLkTEDGevtrGEITFMGERIDNKSPEEIV 93
Cdd:PRK15439 11 LLCARSISKQYSGVE-VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDS----GTLEIGGNPCARLTPAKAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEvEKDIEMVFDYFPRLKERTgLAGYLSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK15439 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASM-QKMKQLLAALGCQLDLDS-SAGSLEVADRQIVEILRGLMRDSRIL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHElLNNEDV 245
Cdd:PRK15439 163 ILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD-LSTDDI 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
14-242 |
3.18e-19 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 86.66 E-value: 3.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLkTEDGEVTRGEITFMGERIDNKSPE 90
Cdd:COG4172 6 LLSVEDLSVAFgqgGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLL-PDPAAHPSGSILFDGQDLLGLSER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EI--VRSG----IFQvmegrrivEDMT-----------VIENLRL-GAFTRNDNEvEKDIEmvfdyfprLKERTG----- 147
Cdd:COG4172 85 ELrrIRGNriamIFQ--------EPMTslnplhtigkqIAEVLRLhRGLSGAAAR-ARALE--------LLERVGipdpe 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 --LAGY---LSGGEQQ--MLAIgrALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAAD 220
Cdd:COG4172 148 rrLDAYphqLSGGQRQrvMIAM--ALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFAD 225
|
250 260
....*....|....*....|..
gi 559777052 221 YGYIMESGKIVLDGTKHELLNN 242
Cdd:COG4172 226 RVAVMRQGEIVEQGPTAELFAA 247
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
28-243 |
3.78e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 83.74 E-value: 3.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTlkaISGLLKTEDgeVTRGEITFMGERIDNKSPEEiVRSGIfqvmegrRIV 107
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTV---VSLLERFYD--PTSGEILLDGVDIRDLNLRW-LRSQI-------GLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 E------DMTVIENLRLGAFTRNDNEVEKDIEMVFDY-----FP-RLKERTGLAGY-LSGGEQQMLAIGRALMARPKMIL 174
Cdd:cd03249 83 SqepvlfDGTIAENIRYGKPDATDEEVEEAAKKANIHdfimsLPdGYDTLVGERGSqLSGGQKQRIAIARALLRNPKILL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKINKdqGITMLLVEQNANfALHAADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:cd03249 163 LDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDELMAQK 228
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
29-251 |
3.83e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 84.69 E-value: 3.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERiDNKSPEEIVRS-GI-FQVMEGRRI 106
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGK-KNKKLKPLRKKvGIvFQFPEHQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 VEdmTVIENLRLGA--FTRNDNEVEKdiemvfdyfpRLKERTGLAGY-----------LSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK13634 100 EE--TVEKDICFGPmnFGVSEEDAKQ----------KAREMIELVGLpeellarspfeLSGGQMRRVAIAGVLAMEPEVL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL-LNNEDVKEFYLG 251
Cdd:PRK13634 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIfADPDELEAIGLD 246
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
15-182 |
6.21e-19 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 85.66 E-value: 6.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVR 94
Cdd:PRK09536 4 IDVSDLSVEFGDTT-VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----TAGTVLVAGDDVEALSARAASR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SgIFQVMEGRRIVEDMTVIENLRLGA---FTRNDNEVEKDIEMVfdyfPRLKERTGLAGY-------LSGGEQQMLAIGR 164
Cdd:PRK09536 78 R-VASVPQDTSLSFEFDVRQVVEMGRtphRSRFDTWTETDRAAV----ERAMERTGVAQFadrpvtsLSGGERQRVLLAR 152
|
170
....*....|....*...
gi 559777052 165 ALMARPKMILLDEPSMGL 182
Cdd:PRK09536 153 ALAQATPVLLLDEPTASL 170
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
26-242 |
6.98e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 84.37 E-value: 6.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 26 EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMG-----ERIDNKSpeeivRSGIfqV 100
Cdd:COG4586 33 REVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVP-----TSGEVRVLGyvpfkRRKEFAR-----RIGV--V 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 101 MeGRR--IVEDMTVIENLRL-GAFTR-NDNEVEKDIEMvfdyfprLKERTGLAGY-------LSGGeQQMLA-IGRALMA 168
Cdd:COG4586 101 F-GQRsqLWWDLPAIDSFRLlKAIYRiPDAEYKKRLDE-------LVELLDLGELldtpvrqLSLG-QRMRCeLAAALLH 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 169 RPKMILLDEPSMGLSpLLVKE-VFSIIEKINKDQGITMLL-------VEQNANFALhaadygyIMESGKIVLDGTKHELL 240
Cdd:COG4586 172 RPKILFLDEPTIGLD-VVSKEaIREFLKEYNRERGTTILLtshdmddIEALCDRVI-------VIDHGRIIYDGSLEELK 243
|
..
gi 559777052 241 NN 242
Cdd:COG4586 244 ER 245
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
30-269 |
7.86e-19 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 84.50 E-value: 7.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSpeEIVRSGIFQVMEGRRIVED 109
Cdd:PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-----AGKITVLGVPVPARA--RLARARIGVVPQFDNLDLE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGA--FTRNDNEVEKDIEMVFDyFPRLKERTGL-AGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSP-- 184
Cdd:PRK13536 129 FTVRENLLVFGryFGMSTREIEAVIPSLLE-FARLESKADArVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPha 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 185 --LLVKEVFSIIEKinkdqGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNE---DVKEFYlGGGDEERKS 259
Cdd:PRK13536 208 rhLIWERLRSLLAR-----GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHigcQVIEIY-GGDPHELSS 281
|
250
....*....|
gi 559777052 260 FknLKSYKRR 269
Cdd:PRK13536 282 L--VKPYARR 289
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
34-244 |
9.82e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 83.63 E-value: 9.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEIVRSG-IFQVMEGRRIVEdmTV 112
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGvVFQFPESQLFEE--TV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 113 IENLRLGA--FTRNDNEVEK----DIEMVfDYFPRLKERTGLAgyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:PRK13643 103 LKDVAFGPqnFGIPKEKAEKiaaeKLEMV-GLADEFWEKSPFE--LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 187 VKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNED 244
Cdd:PRK13643 180 RIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
19-239 |
1.04e-18 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 84.70 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 19 NIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEDgeVTRGEITFMGERIDNKSPEEivrSGIF 98
Cdd:PRK11000 8 NVTKAYGDV-VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ED--ITSGDLFIGEKRMNDVPPAE---RGVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 99 QVMEGRRIVEDMTVIENLRLG---AFTrNDNEVEKDIEMVFDYF--PRLKERTGLAgyLSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK11000 79 MVFQSYALYPHLSVAENMSFGlklAGA-KKEEINQRVNQVAEVLqlAHLLDRKPKA--LSGGQRQRVAIGRTLVAEPSVF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
29-244 |
1.10e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 83.26 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVRS-GI-FQVME---- 102
Cdd:PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITDDNFEKLRKHiGIvFQNPDnqfv 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 103 GRRIVEDMTV-IENLRL--GAFTRNDNEVEKDIEMV--FDYFPRlkertglagYLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK13648 98 GSIVKYDVAFgLENHAVpyDEMHRRVSEALKQVDMLerADYEPN---------ALSGGQKQRVAIAGVLALNPSVIILDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 178 PSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNNED 244
Cdd:PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
10-215 |
1.39e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.13 E-value: 1.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEDGevTRGEITFMGE---R 83
Cdd:PRK10584 2 PAENIVEVHHLKKSVgqgEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL---DDG--SSGEVSLVGQplhQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 IDNKSPEEIVRSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVfdyfpRLKERTGLA-------GYLSGGE 156
Cdd:PRK10584 77 MDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK-----ALLEQLGLGkrldhlpAQLSGGE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFA 215
Cdd:PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA 210
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
17-239 |
1.95e-18 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 83.59 E-value: 1.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVRSG 96
Cdd:PRK10851 5 IANIKKSFGRT-QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----TSGHIRFHGTDVSRLHARDRKVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 97 IFQVMEGRRiveDMTVIENLRLG--AFTRN--------DNEVEKDIEMVfdYFPRLKERtgLAGYLSGGEQQMLAIGRAL 166
Cdd:PRK10851 79 VFQHYALFR---HMTVFDNIAFGltVLPRRerpnaaaiKAKVTQLLEMV--QLAHLADR--YPAQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 167 MARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
14-213 |
2.73e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.11 E-value: 2.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrGEITFMGERIDNKSPEEIV 93
Cdd:TIGR02633 1 LLEMKGIVKTFGGVK-ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWD---GEIYWSGSPLKASNIRDTE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKE-------RTGLAGYLSGGEQQMLAIGRAL 166
Cdd:TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRElqldadnVTRPVGDYGGGQQQLVEIAKAL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 559777052 167 MARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNAN 213
Cdd:TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLN 202
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
14-239 |
3.13e-18 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 83.35 E-value: 3.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIV 93
Cdd:PRK11607 19 LLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----TAGQIMLDGVDLSHVPPYQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQvmeGRRIVEDMTVIENLRLG----AFTRND--NEVEKDIEMV-FDYFPRLKERTglagyLSGGEQQMLAIGRAL 166
Cdd:PRK11607 93 INMMFQ---SYALFPHMTVEQNIAFGlkqdKLPKAEiaSRVNEMLGLVhMQEFAKRKPHQ-----LSGGQRQRVALARSL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 167 MARPKMILLDEPsMG-----LSPLLVKEVFSIIEKInkdqGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK11607 165 AKRPKLLLLDEP-MGaldkkLRDRMQLEVVDILERV----GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
14-251 |
3.87e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 81.57 E-value: 3.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-TRGeitfmgerIDNKSPEEI 92
Cdd:PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVlVSG--------IDTGDFSKL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 --VRS--GI-FQVME----GRRIVEDMTV-IENLRLGAFtrndnEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAI 162
Cdd:PRK13644 73 qgIRKlvGIvFQNPEtqfvGRTVEEDLAFgPENLCLPPI-----EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 163 GRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANfALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
....*....
gi 559777052 243 EDVKefYLG 251
Cdd:PRK13644 226 VSLQ--TLG 232
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
30-208 |
4.38e-18 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 79.97 E-value: 4.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRG---EITFMGER--IDNKSP---EEIVRSGIFQvm 101
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAggaRVAYVPQRseVPDSLPltvRDLVAMGRWA-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 102 egrrivedmtvienlRLGAFTRNDNEVEKDIEmvfdyfpRLKERTGLAGY-------LSGGEQQMLAIGRALMARPKMIL 174
Cdd:NF040873 85 ---------------RRGLWRRLTRDDRAAVD-------DALERVGLADLagrqlgeLSGGQRQRALLAQGLAQEADLLL 142
|
170 180 190
....*....|....*....|....*....|....
gi 559777052 175 LDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLV 208
Cdd:NF040873 143 LDEPTTGLDAESRERIIALLAEE-HARGATVVVV 175
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
13-178 |
5.23e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 83.19 E-value: 5.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEiTfmgeridnkspeei 92
Cdd:COG0488 314 KVLELEGLSKSYGDK-TLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGE-T-------------- 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGIF-QvmEGRRIVEDMTVIENLRLGAftrnDNEVEKDI-----------EMVFDYfprlkertglAGYLSGGEQQML 160
Cdd:COG0488 378 VKIGYFdQ--HQEELDPDKTVLDELRDGA----PGGTEQEVrgylgrflfsgDDAFKP----------VGVLSGGEKARL 441
|
170
....*....|....*...
gi 559777052 161 AIGRALMARPKMILLDEP 178
Cdd:COG0488 442 ALAKLLLSPPNVLLLDEP 459
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
31-235 |
5.85e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 81.33 E-value: 5.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRG--EITFMGERIDNKSPEEIVrSGIFQVMEGRriVE 108
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDdtLITSTSKNKDIKQIRKKV-GLVFQFPESQ--LF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRLGA--FTRNDNEVEKdiemvfdyfpRLKERTGLAGY-----------LSGGEQQMLAIGRALMARPKMILL 175
Cdd:PRK13649 100 EETVLKDVAFGPqnFGVSQEEAEA----------LAREKLALVGIseslfeknpfeLSGGQMRRVAIAGILAMEPKILVL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 176 DEPSMGLSPLLVKEVFSIIEKINKDqGITMLLVEQNANFALHAADYGYIMESGKIVLDGT 235
Cdd:PRK13649 170 DEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
31-241 |
8.77e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 80.98 E-value: 8.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITfmgerIDNKSPEEIVRS------GIFQVMEGR 104
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDIT-----ITHKTKDKYIRPvrkrigMVFQFPESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 105 rIVEDmTVIENLRLGAftRNDNeveKDIEMVFDYFPRLKERTGLAG--------YLSGGEQQMLAIGRALMARPKMILLD 176
Cdd:PRK13646 98 -LFED-TVEREIIFGP--KNFK---MNLDEVKNYAHRLLMDLGFSRdvmsqspfQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 177 EPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
15-242 |
9.41e-18 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 80.13 E-value: 9.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIeVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedG-EVTRGEITFMGERIdnkSPEEIV 93
Cdd:PRK10418 5 IELRNI-ALQAAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA--GvRQTAGRVLLDGKPV---APCALR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFQVMEGRRI----VEDMT--VIENLRLGAFTRNDNEVEKDIEMV-FDYFPRLKERtgLAGYLSGGEQQMLAIGRAL 166
Cdd:PRK10418 78 GRKIATIMQNPRSafnpLHTMHthARETCLALGKPADDATLTAALEAVgLENAARVLKL--YPFEMSGGMLQRMMIALAL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 167 MARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-184 |
9.79e-18 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 80.08 E-value: 9.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 1 MSELARDIEPAeilLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFM 80
Cdd:COG1117 1 MTAPASTLEPK---IEVRNLNVYYGDK-QALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEILLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 81 GERIDNKS--PEEiVRSGI---FQvmegrrivedMTVIEN----LRL-GAFTRND---------------NEVeKDiemv 135
Cdd:COG1117 77 GEDIYDPDvdVVE-LRRRVgmvFQkpn----pfpKSIYDNvaygLRLhGIKSKSEldeiveeslrkaalwDEV-KD---- 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 559777052 136 fdyfpRLKERtGLAgyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSP 184
Cdd:COG1117 147 -----RLKKS-ALG--LSGGQQQRLCIARALAVEPEVLLMDEPTSALDP 187
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
31-249 |
1.20e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 79.88 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLkteDGEvtrGEITFMGERIDNKSPEEIVRsgifqvmegRRI---- 106
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL---PGQ---GEILLNGRPLSDWSAAELAR---------HRAylsq 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 ----VEDMTVIENLRLGAftrNDNEVEKDIEMVFDYfprLKERTGLA-------GYLSGGEQQ-------MLAIGRALMA 168
Cdd:COG4138 77 qqspPFAMPVFQYLALHQ---PAGASSEAVEQLLAQ---LAEALGLEdklsrplTQLSGGEWQrvrlaavLLQVWPTINP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 169 RPKMILLDEPSMGL-----SPL--LVKEVfsiiekinKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:COG4138 151 EGQLLLLDEPMNSLdvaqqAALdrLLREL--------CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMT 222
|
....*...
gi 559777052 242 NEDVKEFY 249
Cdd:COG4138 223 PENLSEVF 230
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
11-245 |
1.25e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 81.05 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDE----VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEItFMGERIDN 86
Cdd:PRK13631 18 DDIILRVKNLYCVFDEkqenELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI-YIGDKKNN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 87 KSPEEIVRS-GIFQVMEGRRIVEDMTVIENLRLGAFTrndneVEKDIEM------VFDYFPRLK-----ERTGLaGY--- 151
Cdd:PRK13631 97 HELITNPYSkKIKNFKELRRRVSMVFQFPEYQLFKDT-----IEKDIMFgpvalgVKKSEAKKLakfylNKMGL-DDsyl 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 ------LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIeKINKDQGITMLLVEQNANFALHAADYGYIM 225
Cdd:PRK13631 171 erspfgLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI-LDAKANNKTVFVITHTMEHVLEVADEVIVM 249
|
250 260
....*....|....*....|
gi 559777052 226 ESGKIVLDGTKHELLNNEDV 245
Cdd:PRK13631 250 DKGKILKTGTPYEIFTDQHI 269
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
14-221 |
1.34e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 78.84 E-value: 1.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDnKSPEEIV 93
Cdd:PRK13540 1 MLDVIELDFDYHDQPL-LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-----KGEILFERQSIK-KDLCTYQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIFqVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKERTGLagyLSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK13540 74 KQLCF-VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGL---LSSGQKRQVALLRLWMSKAKLW 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQnaNFALHAADY 221
Cdd:PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ--DLPLNKADY 195
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
26-250 |
1.39e-17 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 79.74 E-value: 1.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 26 EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-TRGEITfmgeridnkSPEEIvrSGIFQvmegr 104
Cdd:COG1134 37 EEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVeVNGRVS---------ALLEL--GAGFH----- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 105 rivEDMTVIENLRLGA----FTRND-NEVEKDIEmvfdyfprlkERTGLAGYL-------SGGEQQMLAIGRALMARPKM 172
Cdd:COG1134 101 ---PELTGRENIYLNGrllgLSRKEiDEKFDEIV----------EFAELGDFIdqpvktySSGMRARLAFAVATAVDPDI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 173 ILLDEpsmGLSpllV------KEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKhellnnEDVK 246
Cdd:COG1134 168 LLVDE---VLA---VgdaafqKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP------EEVI 234
|
....
gi 559777052 247 EFYL 250
Cdd:COG1134 235 AAYE 238
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
31-203 |
1.43e-17 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 82.08 E-value: 1.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDgevtrGEITFMGERIDNKSPEEIVRSGIFQVMEGRRIVEDM 110
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS-----GSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGAFTR-----NDNEVEKDIEMVFDYF-----PRLKERTglagyLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:PRK10982 89 SVMDNMWLGRYPTkgmfvDQDKMYRDTKAIFDELdididPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163
|
170 180
....*....|....*....|...
gi 559777052 181 GLSPLLVKEVFSIIEKInKDQGI 203
Cdd:PRK10982 164 SLTEKEVNHLFTIIRKL-KERGC 185
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
30-243 |
1.51e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 80.23 E-value: 1.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRgeITFMGERIDNKSPEEIV-RSGI-FQVMEGRRIv 107
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK--ITVDGITLTAKTVWDIReKVGIvFQNPDNQFV- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 eDMTVIENLRLGAFTRN--DNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPL 185
Cdd:PRK13640 99 -GATVGDDVAFGLENRAvpRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 186 LVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:PRK13640 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKV 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
17-178 |
1.70e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 81.65 E-value: 1.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEitfmGERI----------DN 86
Cdd:COG0488 1 LENLSKSFGGRPL-LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----GLRIgylpqeppldDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 87 KSPEEIVRSGifqVMEGRRIVEDMTVIEnlRLGAFTRNDNEVEKDIEMVFDYF------PRLKE---RTGLAGY------ 151
Cdd:COG0488 76 LTVLDTVLDG---DAELRALEAELEELE--AKLAEPDEDLERLAELQEEFEALggweaeARAEEilsGLGFPEEdldrpv 150
|
170 180
....*....|....*....|....*....
gi 559777052 152 --LSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:COG0488 151 seLSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-234 |
1.77e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 80.69 E-value: 1.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitfMGERIDNKSpeeivRSGIFQVMEGRRI---VED- 109
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV------LNGRVLFDA-----EKGICLPPEKRRIgyvFQDa 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 -----MTVIENLRLGAFTRNDNEVEK-----DIEMVFDYFPrlkertglaGYLSGGEQQMLAIGRALMARPKMILLDEPs 179
Cdd:PRK11144 86 rlfphYKVRGNLRYGMAKSMVAQFDKivallGIEPLLDRYP---------GSLSGGEKQRVAIGRALLTAPELLLMDEP- 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 180 mgLSPLLV---KEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:PRK11144 156 --LASLDLprkRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
31-245 |
2.08e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 80.05 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEIVRSG--IFQVMEGRRIVE 108
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIglVFQFPEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 dmTVIENLRLGA--FTRNDNEVEKDIEMVFDYFPRLKERTGLAGY-LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPL 185
Cdd:PRK13645 107 --TIEKDIAFGPvnLGENKQEAYKKVPELLKLVQLPEDYVKRSPFeLSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 186 LVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDV 245
Cdd:PRK13645 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQEL 244
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
30-241 |
2.18e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 81.33 E-value: 2.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIvrsgifqvmeGRRI--- 106
Cdd:COG4618 347 ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPP-----TAGSVRLDGADLSQWDREEL----------GRHIgyl 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 ---VE--DMTVIENL-RLGAFtrNDNEVEK-----DI-EMVFdyfpRLKErtglaGY----------LSGGEQQMLAIGR 164
Cdd:COG4618 412 pqdVElfDGTIAENIaRFGDA--DPEKVVAaaklaGVhEMIL----RLPD-----GYdtrigeggarLSGGQRQRIGLAR 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANfALHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:COG4618 481 ALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEVLA 555
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
29-251 |
2.97e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 80.85 E-value: 2.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMG---ERIDNKSPEEIVRSGIFQVMEGRR 105
Cdd:PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-----EPTRGQVLIDGvdiAKISDAELREVRRKKIAMVFQSFA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 IVEDMTVIENLRLGAFTRNDNEVEKDiEMVFDYFPRLKERTGLAGY---LSGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERR-EKALDALRQVGLENYAHSYpdeLSGGMRQRVGLARALAINPDILLMDEAFSAL 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 183 SPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN---NEDVKEFYLG 251
Cdd:PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNnpaNDYVRTFFRG 267
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
14-240 |
4.78e-17 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 78.69 E-value: 4.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIL--------VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGE--- 82
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGLfgakqrapVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----AQGTVSFRGQdly 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 83 RIDNKSPEEIVRS--GIFQVMEG----RR-----IVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKERtglagy 151
Cdd:TIGR02769 77 QLDRKQRRAFRRDvqLVFQDSPSavnpRMtvrqiIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ------ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIV 231
Cdd:TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
....*....
gi 559777052 232 LDGTKHELL 240
Cdd:TIGR02769 231 EECDVAQLL 239
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
31-259 |
1.08e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 77.95 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERID----NKSPEEIVR--SGIFQVMEGR 104
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-----SSGTITIAGYHITpetgNKNLKKLRKkvSLVFQFPEAQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 105 RIVEdmTVIENLRLGA--FTRNDNEVEkdiEMVFDYFPRLKERTGLAGY----LSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PRK13641 98 LFEN--TVLKDVEFGPknFGFSEDEAK---EKALKWLKKVGLSEDLISKspfeLSGGQMRRVAIAGVMAYEPEILCLDEP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 179 SMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNED-VKEFYLgggDEER 257
Cdd:PRK13641 173 AAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEwLKKHYL---DEPA 248
|
..
gi 559777052 258 KS 259
Cdd:PRK13641 249 TS 250
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
11-221 |
1.56e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 77.13 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNK--S 88
Cdd:PRK14243 7 TETVLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPdvD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 PEEiVRSGIFQVMEgRRIVEDMTVIENLRLGAFTRN-----DNEVEKDI------EMVFDyfpRLKErTGLAgyLSGGEQ 157
Cdd:PRK14243 86 PVE-VRRRIGMVFQ-KPNPFPKSIYDNIAYGARINGykgdmDELVERSLrqaalwDEVKD---KLKQ-SGLS--LSGGQQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADY 221
Cdd:PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDM 219
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
30-249 |
1.62e-16 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 76.95 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitFMGERIDNKSPEEIVRSgIFQVMEGRRIVED 109
Cdd:PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW-----LDGEHIQHYASKEVARR-IGLLAQNATTPGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLG------AFTRNDNEVEKDIEMVFdyfpRLKERTGLAGY----LSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:PRK10253 96 ITVQELVARGryphqpLFTRWRKEDEEAVTKAM----QATGITHLADQsvdtLSGGQRQRAWIAMVLAQETAIMLLDEPT 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 180 MGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFY 249
Cdd:PRK10253 172 TWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
6-209 |
2.06e-16 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 78.62 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEILLSVNNIEVVYDEVIlvlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERID 85
Cdd:PRK10982 242 KENKPGEVILEVRNLTSLRQPSI---RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-----EKSAGTITLHGKKIN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 86 NKSPEEIVRSGIFQVMEGRRI--------VEDMTVIENLR--LGAFTRNDNE-VEKDIEMVFDYFpRLK---ERTGLaGY 151
Cdd:PRK10982 314 NHNANEAINHGFALVTEERRStgiyayldIGFNSLISNIRnyKNKVGLLDNSrMKSDTQWVIDSM-RVKtpgHRTQI-GS 391
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFS-IIEKINKDQGITMLLVE 209
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQlIAELAKKDKGIIIISSE 450
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
10-239 |
2.38e-16 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 77.46 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 10 PAEILLSVNNIEVVYD----------EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITF 79
Cdd:COG4608 3 MAEPLLEVRDLKKHFPvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLE-----EPTSGEILF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 80 MGERIDNKSPEEI--VRSG---IFQ----VMEGRRIVEDmTVIENLRL-GAFTRNDNEvEKDIEMVfdyfprlkERTGLA 149
Cdd:COG4608 78 DGQDITGLSGRELrpLRRRmqmVFQdpyaSLNPRMTVGD-IIAEPLRIhGLASKAERR-ERVAELL--------ELVGLR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 150 GY--------LSGGEQQMLAIGRALMARPKMILLDEPsmgLSPLLVkevfSI-------IEKINKDQGITMLLVEQNANF 214
Cdd:COG4608 148 PEhadrypheFSGGQRQRIGIARALALNPKLIVCDEP---VSALDV----SIqaqvlnlLEDLQDELGLTYLFISHDLSV 220
|
250 260
....*....|....*....|....*
gi 559777052 215 ALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:COG4608 221 VRHISDRVAVMYLGKIVEIAPRDEL 245
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-251 |
2.51e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 76.62 E-value: 2.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-TRGEITFMGERIDNKSPEEIvRSGIFQVMEGRRIVE 108
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIkVDGKVLYFGKDIFQIDAIKL-RKEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRLGAFT---RNDNEVEKDIEMVFDYFPRLKE----RTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMG 181
Cdd:PRK14246 104 HLSIYDNIAYPLKShgiKEKREIKKIVEECLRKVGLWKEvydrLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 182 LSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN---NEDVKEFYLG 251
Cdd:PRK14246 184 IDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTspkNELTEKYVIG 254
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
28-239 |
2.97e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 77.15 E-value: 2.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNKSPEEIVRS----G-IFQ--- 99
Cdd:PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-----TSGRVLVDGQDLTALSEKELRKArrqiGmIFQhfn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 100 VMEGRrivedmTVIEN----LRLGAFTRNdnEVEKDIEmvfdyfpRLKERTGLAG----Y---LSGGEQQMLAIGRALMA 168
Cdd:PRK11153 93 LLSSR------TVFDNvalpLELAGTPKA--EIKARVT-------ELLELVGLSDkadrYpaqLSGGQKQRVAIARALAS 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 169 RPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGT--------KHEL 239
Cdd:PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshpKHPL 236
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
9-247 |
3.04e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.05 E-value: 3.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIeVVYDEV---ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevTRGEITFMGERID 85
Cdd:PRK13549 254 TIGEVILEVRNL-TAWDPVnphIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR----WEGEIFIDGKPVK 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 86 NKSPEEIVRSGIFQVMEGRR---IVEDMTVIENLRLGAFTR-------NDNEVEKDIEmvfDYFPRLKERTG---LA-GY 151
Cdd:PRK13549 329 IRNPQQAIAQGIAMVPEDRKrdgIVPVMGVGKNITLAALDRftggsriDDAAELKTIL---ESIQRLKVKTAspeLAiAR 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIv 231
Cdd:PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKL- 483
|
250
....*....|....*.
gi 559777052 232 ldgtKHELLNNEDVKE 247
Cdd:PRK13549 484 ----KGDLINHNLTQE 495
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
17-244 |
3.28e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 76.66 E-value: 3.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDE----VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgEITFMGERIDNKSP--E 90
Cdd:PRK13651 5 VKNIVKIFNKklptELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI---EWIFKDEKNKKKTKekE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVRSGIFQVMEGRRI--VEDM------------------TVIENLRLGAFTRNDNEVE------KDIEMV---FDYFPR 141
Cdd:PRK13651 82 KVLEKLVIQKTRFKKIkkIKEIrrrvgvvfqfaeyqlfeqTIEKDIIFGPVSMGVSKEEakkraaKYIELVgldESYLQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 142 LKERtglagyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADY 221
Cdd:PRK13651 162 SPFE------LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKR 234
|
250 260
....*....|....*....|...
gi 559777052 222 GYIMESGKIVLDGTKHELLNNED 244
Cdd:PRK13651 235 TIFFKDGKIIKDGDTYDILSDNK 257
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
30-234 |
3.82e-16 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 74.51 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedGEVTRGEITFMGERIDNKSPEEIVRsgifQVMEGRRIVED 109
Cdd:cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT---GLGVSGEVLINGRPLDKRSFRKIIG----YVPQDDILHPT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGAFTRNdnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKE 189
Cdd:cd03213 97 LTVRETLMFAAKLRG---------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 559777052 190 VFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03213 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
13-215 |
3.90e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 75.62 E-value: 3.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEVIL---VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktedGEVTRGEITFMGERIDNKSP 89
Cdd:PRK11629 4 ILLQCDNLCKRYQEGSVqtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----DTPTSGDVIFNGQPMSKLSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 E---EIVRSGIFQVMEGRRIVEDMTVIEN----LRLGAFTRNDNEvEKDIEMV--FDYFPRLKERTGlagYLSGGEQQML 160
Cdd:PRK11629 79 AakaELRNQKLGFIYQFHHLLPDFTALENvampLLIGKKKPAEIN-SRALEMLaaVGLEHRANHRPS---ELSGGERQRV 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 161 AIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFA 215
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
34-239 |
4.52e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 77.56 E-value: 4.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRR---IVEDM 110
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK----FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKrhgIVPIL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGAF------TRNDNEVEKDIemVFDYFPRLKERTGLA----GYLSGGEQQMLAIGRALMARPKMILLDEPSM 180
Cdd:TIGR02633 355 GVGKNITLSVLksfcfkMRIDAAAELQI--IGSAIQRLKVKTASPflpiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 181 GLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:TIGR02633 433 GVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
12-242 |
6.12e-16 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 76.28 E-value: 6.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYD------------EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITF 79
Cdd:PRK15079 6 KVLLEVADLKVHFDikdgkqwfwqppKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----TDGEVAW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 80 MGERIDNKSPEEI--VRSG---IFQ----VMEGRRIVEDMtVIENLRLGAFTRNDNEVE---KDIEMVFDYFPRLKERtg 147
Cdd:PRK15079 81 LGKDLLGMKDDEWraVRSDiqmIFQdplaSLNPRMTIGEI-IAEPLRTYHPKLSRQEVKdrvKAMMLKVGLLPNLINR-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 lagY---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYI 224
Cdd:PRK15079 158 ---YpheFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234
|
250
....*....|....*...
gi 559777052 225 MESGKIVLDGTKHELLNN 242
Cdd:PRK15079 235 MYLGHAVELGTYDEVYHN 252
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
31-246 |
7.13e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 77.13 E-value: 7.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRRIVEDM 110
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-----EPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGAF-TR--------NDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMG 181
Cdd:PRK09700 96 TVLENLYIGRHlTKkvcgvniiDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 182 LSPLLVKEVFSIIEKINKDqGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVK 246
Cdd:PRK09700 176 LTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
34-238 |
9.60e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 76.49 E-value: 9.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRR---IVEDM 110
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKaegIIPVH 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIEN---------LRLGAFTRNDNEVEKDIEmvfdYFPRLKERT----GLAGYLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK11288 347 SVADNinisarrhhLRAGCLINNRWEAENADR----FIRSLNIKTpsreQLIMNLSGGNQQKAILGRWLSEDMKVILLDE 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 178 PSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHE 238
Cdd:PRK11288 423 PTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
15-248 |
9.80e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 76.76 E-value: 9.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkTEDGEVTRGEI----------------- 77
Cdd:TIGR03269 1 IEVKNLTKKFDGKE-VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG---MDQYEPTSGRIiyhvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 78 -----------TFMGERIDNKSPEEIVRSGIFQ---VMEGRR--IVEDMTVIENLrLGAFTRNDNEVEKDIEMVFDYFP- 140
Cdd:TIGR03269 77 kvgepcpvcggTLEPEEVDFWNLSDKLRRRIRKriaIMLQRTfaLYGDDTVLDNV-LEALEEIGYEGKEAVGRAVDLIEm 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 141 -RLKER-TGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHA 218
Cdd:TIGR03269 156 vQLSHRiTHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
|
250 260 270
....*....|....*....|....*....|..
gi 559777052 219 ADYGYIMESGKIVLDGTKHELLNN--EDVKEF 248
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPDEVVAVfmEGVSEV 267
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
14-241 |
2.02e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 75.51 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPE 90
Cdd:PRK15134 5 LLAIENLSVAFrqqQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EI--VR----SGIFQvmegrrivEDMTVIENLrlgaftrndNEVEKDIEMVFDYFPRLK------------ERTG----- 147
Cdd:PRK15134 85 TLrgVRgnkiAMIFQ--------EPMVSLNPL---------HTLEKQLYEVLSLHRGMRreaargeilnclDRVGirqaa 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 --LAGY---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYG 222
Cdd:PRK15134 148 krLTDYphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV 227
|
250
....*....|....*....
gi 559777052 223 YIMESGKIVLDGTKHELLN 241
Cdd:PRK15134 228 AVMQNGRCVEQNRAATLFS 246
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
6-240 |
2.52e-15 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 75.52 E-value: 2.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEILLSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERI 84
Cdd:TIGR02203 322 RAIERARGDVEFRNVTFRYpGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-----EPDSGQILLDGHDL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEIvRSGIFQVMEGRRIVEDmTVIENLRLGAF-TRNDNEVEKDIEMVF--DYFPRLKErtGL-------AGYLSG 154
Cdd:TIGR02203 397 ADYTLASL-RRQVALVSQDVVLFND-TIANNIAYGRTeQADRAEIERALAAAYaqDFVDKLPL--GLdtpigenGVLLSG 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINkdQGITMLLVEQNANfALHAADYGYIMESGKIVLDG 234
Cdd:TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS-TIEKADRIVVMDDGRIVERG 549
|
....*.
gi 559777052 235 TKHELL 240
Cdd:TIGR02203 550 THNELL 555
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
15-241 |
2.73e-15 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 75.55 E-value: 2.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmGERIDNKSpEEIVR 94
Cdd:TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN-----GFSLKDID-RHTLR 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIFQVMEGRRIVeDMTVIENLRLGA---FTRND-------NEVEKDIE-MVFDYFPRLKERtglAGYLSGGEQQMLAIG 163
Cdd:TIGR01193 548 QFINYLPQEPYIF-SGSILENLLLGAkenVSQDEiwaaceiAEIKDDIEnMPLGYQTELSEE---GSSISGGQKQRIALA 623
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 164 RALMARPKMILLDEPSMGLSPLLVKEvfsIIEKINKDQGITMLLVEQNANFAlHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKK---IVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELLD 697
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
31-207 |
2.77e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 72.99 E-value: 2.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrgeITFMGERIDNKSPEEI--VRSGIFQVMEGRRIVE 108
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK-----IWFSGHDITRLKNREVpfLRRQIGMIFQDHHLLM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRL-----GAftrNDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLS 183
Cdd:PRK10908 93 DRTVYDNVAIpliiaGA---SGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180
....*....|....*....|....
gi 559777052 184 PLLVKEVFSIIEKINKdQGITMLL 207
Cdd:PRK10908 170 DALSEGILRLFEEFNR-VGVTVLM 192
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
13-240 |
2.97e-15 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 73.57 E-value: 2.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEVIL--------VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERI 84
Cdd:PRK10419 2 TLLNVSGLSHHYAHGGLsgkhqhqtVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-----SQGNVSWRGEPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 D--NKSPEEIVRSGI---FQVMEG----RRIVEDMtVIENLR-LGAFTRNDNE--VEKDIEMVfDYFPRLKERtgLAGYL 152
Cdd:PRK10419 77 AklNRAQRKAFRRDIqmvFQDSISavnpRKTVREI-IREPLRhLLSLDKAERLarASEMLRAV-DLDDSVLDK--RPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 153 SGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVL 232
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
....*...
gi 559777052 233 DGTKHELL 240
Cdd:PRK10419 233 TQPVGDKL 240
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
30-249 |
3.42e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 73.28 E-value: 3.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISgllktEDGEVTRGEITFMGERIDNKSPEEIVRSGIF--QVMEGrriV 107
Cdd:PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-----RHQPPSEGEILLDAQPLESWSSKAFARKVAYlpQQLPA---A 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIENLR---------LGAFTRNDNE-VEKDIEMVfDYFPrLKERtgLAGYLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK10575 98 EGMTVRELVAigrypwhgaLGRFGAADREkVEEAISLV-GLKP-LAHR--LVDSLSGGERQRAWIAMLVAQDSRCLLLDE 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 178 PSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFY 249
Cdd:PRK10575 174 PTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
12-241 |
3.87e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 72.89 E-value: 3.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEE 91
Cdd:PRK14239 3 EPILQVSDLSVYYNKK-KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 I-VRSGIFQVMEGRRIVEdMTVIEN----LRLGAF---TRNDNEVEKDI------EMVFDyfpRLKERtglAGYLSGGEQ 157
Cdd:PRK14239 82 VdLRKEIGMVFQQPNPFP-MSIYENvvygLRLKGIkdkQVLDEAVEKSLkgasiwDEVKD---RLHDS---ALGLSGGQQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAAD-YGYIMESGKIVLDGTK 236
Cdd:PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD--YTMLLVTRSMQQASRISDrTGFFLDGDLIEYNDTK 232
|
....*
gi 559777052 237 HELLN 241
Cdd:PRK14239 233 QMFMN 237
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
12-202 |
5.44e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 74.27 E-value: 5.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVYDEViLVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLkTEDGevtrGEITFMGERIDNKSPEE 91
Cdd:PRK10762 2 QALLQLKGIDKAFPGV-KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDA----GSILYLGKEVTFNGPKS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVRSGIFQVMEGRRIVEDMTVIENLRLG-----AFTRNDNEvekdiEMvFDYFPRLKERTG-------LAGYLSGGEQQM 159
Cdd:PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGrefvnRFGRIDWK-----KM-YAEADKLLARLNlrfssdkLVGELSIGEQQM 149
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 559777052 160 LAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQG 202
Cdd:PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL-KSQG 191
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
13-236 |
6.07e-15 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 72.37 E-value: 6.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEvILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkTEDGEVTRGEITFMGERIDNKSPEEI 92
Cdd:CHL00131 6 PILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG---HPAYKILEGDILFKGESILDLEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 VRSGIFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFdYFPRLKERTGLAGY------------LSGGEQQML 160
Cdd:CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE-FLEIINEKLKLVGMdpsflsrnvnegFSGGEKKRN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 161 AIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKI-NKDQGITMLLVEQNAnFALHAADYGYIMESGKIVLDGTK 236
Cdd:CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLmTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGDA 236
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
15-234 |
6.60e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.61 E-value: 6.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNK------- 87
Cdd:PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQAlqknlva 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 88 ---SPEEIVRSgiFQVMegrriVEDMTVIEnlRLGAFTRNDNEVEKDIEMVFDYFPR---LKERTGLAGYLSGGEQQMLA 161
Cdd:PRK15056 82 yvpQSEEVDWS--FPVL-----VEDVVMMG--RYGHMGWLRRAKKRDRQIVTAALARvdmVEFRHRQIGELSGGQKKRVF 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 162 IGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGyIMESGKIVLDG 234
Cdd:PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASG 223
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
30-249 |
7.50e-15 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 72.55 E-value: 7.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLL---KTEDGEVTRGEITFMGE---RIDNKS--------PEEIVRS 95
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLtggGAPRGARVTGDVTLNGEplaAIDAPRlarlravlPQAAQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 96 GIFQVmegRRIVEDMTVIENLRLGAFTRNDNEVEkdiemvfDYFPRLKERTGLAG----YLSGGEQQMLAIGRAL----- 166
Cdd:PRK13547 96 FAFSA---REIVLLGRYPHARRAGALTHRDGEIA-------WQALALAGATALVGrdvtTLSGGELARVQFARVLaqlwp 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 167 ----MARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK13547 166 phdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTP 245
|
....*..
gi 559777052 243 EDVKEFY 249
Cdd:PRK13547 246 AHIARCY 252
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
15-240 |
1.12e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 71.49 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYD-EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIV 93
Cdd:cd03251 1 VEFKNVTFRYPgDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-----DVDSGRILIDGHDVRDYTLASLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSgiFQVMEGRRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVF--DYFPRLKErtglaGY----------LSGGEQQMLA 161
Cdd:cd03251 76 RQ--IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANahEFIMELPE-----GYdtvigergvkLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 162 IGRALMARPKMILLDEPSMGL---SPLLVKEVfsiIEKINKDQgiTMLLVEQNANFALHaADYGYIMESGKIVLDGTKHE 238
Cdd:cd03251 149 IARALLKDPPILILDEATSALdteSERLVQAA---LERLMKNR--TTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222
|
..
gi 559777052 239 LL 240
Cdd:cd03251 223 LL 224
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
30-240 |
1.51e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 71.58 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERID-NKSPEEIVR---SGIFQVMEGRR 105
Cdd:PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-----KGAVLWQGKPLDySKRGLLALRqqvATVFQDPEQQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 IVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPL 185
Cdd:PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 186 LVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELL 240
Cdd:PRK13638 171 GRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
30-182 |
1.93e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 70.21 E-value: 1.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitfMGERIDNKSPEEIVRS----GIFQVMEGRr 105
Cdd:cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL------LNGGPLDFQRDSIARGllylGHAPGIKTT- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 ivedMTVIENLRlgaFTRNDNEVEKdIEMVFDyfprlkeRTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:cd03231 88 ----LSVLENLR---FWHADHSDEQ-VEEALA-------RVGLNGFedrpvaqLSAGQQRRVALARLLLSGRPLWILDEP 152
|
....
gi 559777052 179 SMGL 182
Cdd:cd03231 153 TTAL 156
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
27-206 |
2.32e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 70.54 E-value: 2.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 27 VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeITFMGERID--NKSPEEIV---RSGIFQVM 101
Cdd:COG4778 23 RLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSIL---VRHDGGWVDlaQASPREILalrRRTIGYVS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 102 EGRRIV-----EDmTVIENLRLGAFTRndNEVEKDIEMVFDYFpRLKER-------TglagyLSGGEQQMLAIGRALMAR 169
Cdd:COG4778 100 QFLRVIprvsaLD-VVAEPLLERGVDR--EEARARARELLARL-NLPERlwdlppaT-----FSGGEQQRVNIARGFIAD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 559777052 170 PKMILLDEPSMGLSP---LLVKEVfsIIEKinKDQGITML 206
Cdd:COG4778 171 PPLLLLDEPTASLDAanrAVVVEL--IEEA--KARGTAII 206
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
15-185 |
2.72e-14 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 71.80 E-value: 2.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLlktEdgEVTRGEITFMGERIDNKSPEEivR 94
Cdd:PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL---E--RITSGEIWIGGRVVNELEPAD--R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 sGIFQVMEGRRIVEDMTVIENLRLGAFTRN------DNEVEK-----DIEMVFDYFPRlkertglagYLSGGEQQMLAIG 163
Cdd:PRK11650 77 -DIAMVFQNYALYPHMSVRENMAYGLKIRGmpkaeiEERVAEaarilELEPLLDRKPR---------ELSGGQRQRVAMG 146
|
170 180
....*....|....*....|..
gi 559777052 164 RALMARPKMILLDEPsmgLSPL 185
Cdd:PRK11650 147 RAIVREPAVFLFDEP---LSNL 165
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
14-250 |
3.26e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 70.89 E-value: 3.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILV--LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEE 91
Cdd:PRK13642 4 ILEVENLVFKYEKESDVnqLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-----EEFEGKVKIDGELLTAENVWN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVRS--GIFQVMEGRRIveDMTVIENLRLGAFTRN--DNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALM 167
Cdd:PRK13642 79 LRRKigMVFQNPDNQFV--GATVEDDVAFGMENQGipREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALhAADYGYIMESGKIVLDGTKHELL-NNEDVK 246
Cdd:PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFaTSEDMV 235
|
....
gi 559777052 247 EFYL 250
Cdd:PRK13642 236 EIGL 239
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
15-179 |
3.79e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 68.78 E-value: 3.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIv 93
Cdd:cd03246 1 LEVENVSFRYpGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWDPNEL- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 rsgifqvmeGRRIvedMTVIENLRLGAFTRNDNevekdiemvfdyfprlkertglagYLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03246 75 ---------GDHV---GYLPQDDELFSGSIAEN------------------------ILSGGQRQRLGLARALYGNPRIL 118
|
....*.
gi 559777052 174 LLDEPS 179
Cdd:cd03246 119 VLDEPN 124
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
29-182 |
3.81e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 69.52 E-value: 3.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtRGEITFMGERIDNKSPEEIV-----RSGifqvmeg 103
Cdd:PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-----AGTIKLDGGDIDDPDVAEAChylghRNA------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 104 rrIVEDMTVIENLRLGAFTRNDNEVekDIEMVFdyfprlkERTGL-------AGYLSGGEQQMLAIGRALMARPKMILLD 176
Cdd:PRK13539 84 --MKPALTVAENLEFWAAFLGGEEL--DIAAAL-------EAVGLaplahlpFGYLSAGQKRRVALARLLVSNRPIWILD 152
|
....*.
gi 559777052 177 EPSMGL 182
Cdd:PRK13539 153 EPTAAL 158
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
26-182 |
5.55e-14 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 71.68 E-value: 5.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 26 EVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISgllktedGEVTRGEITfMGERIDNKSPeeivRSGIFQvmegRR 105
Cdd:TIGR00956 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA-------ERVTTGVIT-GGDRLVNGRP----LDSSFQ----RS 837
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 I---------VEDMTVIENLRLGAFTRNDNEVEKDIEMVF-DYFPRLKERTGLAGYLSG--GE------QQMLAIGRALM 167
Cdd:TIGR00956 838 IgyvqqqdlhLPTSTVRESLRFSAYLRQPKSVSKSEKMEYvEEVIKLLEMESYADAVVGvpGEglnveqRKRLTIGVELV 917
|
170
....*....|....*.
gi 559777052 168 ARPKMIL-LDEPSMGL 182
Cdd:TIGR00956 918 AKPKLLLfLDEPTSGL 933
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
11-220 |
6.47e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.97 E-value: 6.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPE 90
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAK-ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-----SPTSGTLLFEGEDISTLKPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVR--SGIFQ--VMEGRrivedmTVIENLRLGAFTRNDNEVEKDIEMVFDYFpRLKERTGLAGY--LSGGEQQMLAIGR 164
Cdd:PRK10247 78 IYRQqvSYCAQtpTLFGD------TVYDNLIFPWQIRNQQPDPAIFLDDLERF-ALPDTILTKNIaeLSGGEKQRISLIR 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAAD 220
Cdd:PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADK 206
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-240 |
8.50e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 70.99 E-value: 8.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 1 MSELARDIEPAEILLSVNNIEVVYDE----VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgE 76
Cdd:TIGR03269 266 EVEKECEVEVGEPIIKVRNVSKRYISvdrgVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV---N 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 77 ITFMGERIDNKSPEEIVRS------GI----FQVMEGRRIVEDMT---------------VIENLRLGAFTrndnevEKD 131
Cdd:TIGR03269 343 VRVGDEWVDMTKPGPDGRGrakryiGIlhqeYDLYPHRTVLDNLTeaiglelpdelarmkAVITLKMVGFD------EEK 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 132 IEMVFDYFPRlkertglagYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQN 211
Cdd:TIGR03269 417 AEEILDKYPD---------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
|
250 260
....*....|....*....|....*....
gi 559777052 212 ANFALHAADYGYIMESGKIVLDGTKHELL 240
Cdd:TIGR03269 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
15-229 |
1.01e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 66.70 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmgeridnkspeeivr 94
Cdd:cd03221 1 IELENLSKTYGGKLL-LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 sgifqvmegrrivedmtviENLRLGaftrndnevekdiemvfdYFPRlkertglagyLSGGEQQMLAIGRALMARPKMIL 174
Cdd:cd03221 61 -------------------STVKIG------------------YFEQ----------LSGGEKMRLALAKLLLENPNLLL 93
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 175 LDEPSMGLSpllVKEVFSIIEKINKDQGiTMLLVEQNANFALHAADYGYIMESGK 229
Cdd:cd03221 94 LDEPTNHLD---LESIEALEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
31-240 |
1.34e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 70.46 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedGEVTRGEITFMGERIDnkSPEEIVRSGIfqVMEGRRIVEDM 110
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK--GVKGSGSVLLNGMPID--AKEMRAISAY--VQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGAFTRNDNEVEKD--IEMVFDYFPRL------KERTGLAGY---LSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:TIGR00955 115 TVREHLMFQAHLRMPRRVTKKekRERVDEVLQALglrkcaNTRIGVPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPT 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 180 MGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELL 240
Cdd:TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
14-218 |
1.87e-13 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 69.75 E-value: 1.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVY---DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTtLKAISGLLKtedgEVTRGEITFMGERIDNKSPE 90
Cdd:PRK10535 4 LLELKDIRRSYpsgEEQVEVLKGISLDIYAGEMVAIVGASGSGKST-LMNILGCLD----KPTSGTYRVAGQDVATLDAD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 91 EIVR------SGIFQVMEgrrIVEDMTVIENLRLGAF---TRNDNEVEKDIEmvfdyfprLKERTGLA-------GYLSG 154
Cdd:PRK10535 79 ALAQlrrehfGFIFQRYH---LLSHLTAAQNVEVPAVyagLERKQRLLRAQE--------LLQRLGLEdrveyqpSQLSG 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHA 218
Cdd:PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQA 210
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
15-177 |
2.18e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 69.45 E-value: 2.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTR---GEITFMGER-------- 83
Cdd:COG4178 363 LALEDLTLRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpagARVLFLPQRpylplgtl 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 ---------IDNKSPEEIVrsgifqvmegrrivedmTVIENLRLGAFTrndnevekdiemvfdyfPRLKERTGLAGYLSG 154
Cdd:COG4178 443 reallypatAEAFSDAELR-----------------EALEAVGLGHLA-----------------ERLDEEADWDQVLSL 488
|
170 180
....*....|....*....|...
gi 559777052 155 GEQQMLAIGRALMARPKMILLDE 177
Cdd:COG4178 489 GEQQRLAFARLLLHKPDWLFLDE 511
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
40-241 |
2.28e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 70.04 E-value: 2.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 40 KGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitfmGERIDNKSpeEIVRSGIFQVMEGRRIVEDMTVIENLRLG 119
Cdd:TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG-----GKDIETNL--DAVRQSLGMCPQHNILFHHLTVAEHILFY 1027
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 120 AFTRNDNEVEKDIEMvfdyfPRLKERTGL-------AGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFS 192
Cdd:TIGR01257 1028 AQLKGRSWEEAQLEM-----EAMLEDTGLhhkrneeAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 559777052 193 IIEKINkdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLN 241
Cdd:TIGR01257 1103 LLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
30-178 |
2.51e-13 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 67.80 E-value: 2.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEeivRSGIFQ---VMEGRRI 106
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-----PYQHGSITLDGKPVEGPGAE---RGVVFQnegLLPWRNV 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 107 VEDmtVIENLRLGAFTRNDNEvEKDIEMVfdyfprlkERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PRK11248 88 QDN--VAFGLQLAGVEKMQRL-EIAHQML--------KKVGLEGAekryiwqLSGGQRQRVGIARALAANPQLLLLDEP 155
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
29-243 |
2.84e-13 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 67.51 E-value: 2.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitFMGERIDNKSPEEIvRSGIFQVMEgRRIVE 108
Cdd:cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL-----VDGHDLALADPAWL-RRQVGVVLQ-ENVLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLrlgAFTRNDNEVEKDIEMV-----FDYFPRLKErtglaGY----------LSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03252 89 NRSIRDNI---ALADPGMSMERVIEAAklagaHDFISELPE-----GYdtivgeqgagLSGGQRQRIAIARALIHNPRIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKdqGITMLLVEQNANfALHAADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:cd03252 161 IFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
32-247 |
2.88e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 69.04 E-value: 2.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 32 RGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRR------ 105
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngffp 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 ---IVEDMTVIENLRLGAFTR-----NDNEVEKDIEmvfdyfprlKERTGLA----------GYLSGGEQQMLAIGRALM 167
Cdd:PRK09700 355 nfsIAQNMAISRSLKDGGYKGamglfHEVDEQRTAE---------NQRELLAlkchsvnqniTELSGGNQQKVLISKWLC 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 168 ARPKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHAADYGYIMESGKIvldgtKHELLNNEDVKE 247
Cdd:PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIAVFCEGRL-----TQILTNRDDMSE 499
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
14-178 |
5.31e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 65.98 E-value: 5.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitFMGERIdNKSPEEIV 93
Cdd:PRK13538 1 MLEARNLACERDERIL-FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL-----WQGEPI-RRQRDEYH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 R--------SGIfqvmegrriVEDMTVIENLRlgAFTRNDNEVekDIEMVFDYFprlkERTGLAGY-------LSGGEQQ 158
Cdd:PRK13538 74 QdllylghqPGI---------KTELTALENLR--FYQRLHGPG--DDEALWEAL----AQVGLAGFedvpvrqLSAGQQR 136
|
170 180
....*....|....*....|
gi 559777052 159 MLAIGRALMARPKMILLDEP 178
Cdd:PRK13538 137 RVALARLWLTRAPLWILDEP 156
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
15-229 |
7.50e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 65.57 E-value: 7.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEV----ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVT----------------- 73
Cdd:cd03250 1 ISVEDASFTWDSGeqetSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSvpgsiayvsqepwiqng 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 74 --RGEITFmGERIDNKSPEEIVRSGI----FQVMEGRriveDMTVIenlrlGaftrndnevEKDIEmvfdyfprlkertg 147
Cdd:cd03250 81 tiRENILF-GKPFDEERYEKVIKACAlepdLEILPDG----DLTEI-----G---------EKGIN-------------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 lagyLSGGEQQMLAIGRALMARPKMILLDEPsmgLSPL-------LVKEVFSIIEKINKdqgiTMLLVEQNANFALHaAD 220
Cdd:cd03250 128 ----LSGGQKQRISLARAVYSDADIYLLDDP---LSAVdahvgrhIFENCILGLLLNNK----TRILVTHQLQLLPH-AD 195
|
....*....
gi 559777052 221 YGYIMESGK 229
Cdd:cd03250 196 QIVVLDNGR 204
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
15-239 |
8.84e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 67.95 E-value: 8.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTedgevtRGEITFMGERIDNKSPEEIvR 94
Cdd:PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY------QGSLKINGIELRELDPESW-R 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 SGIF------QVMEGrrivedmTVIENLRLGAFTRNDNEVEKDIEM--VFDYFPRLKErtGL-------AGYLSGGEQQM 159
Cdd:PRK11174 423 KHLSwvgqnpQLPHG-------TLRDNVLLGNPDASDEQLQQALENawVSEFLPLLPQ--GLdtpigdqAAGLSVGQAQR 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 160 LAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLV----EQnanfaLHAADYGYIMESGKIVLDGT 235
Cdd:PRK11174 494 LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVthqlED-----LAQWDQIWVMQDGQIVQQGD 566
|
....
gi 559777052 236 KHEL 239
Cdd:PRK11174 567 YAEL 570
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
5-199 |
9.23e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 68.01 E-value: 9.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVVYDEV-ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtrGEITFMGER 83
Cdd:TIGR01271 1208 AQKCWPSGGQMDVQGLTAKYTEAgRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE------GEIQIDGVS 1281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 IDNKSPEEIVRSgiFQVMEGRRIVEDMTVIENLRLGAfTRNDNEV-----EKDIEMVFDYFP-RLKERTGLAGY-LSGGE 156
Cdd:TIGR01271 1282 WNSVTLQTWRKA--FGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIwkvaeEVGLKSVIEQFPdKLDFVLVDGGYvLSNGH 1358
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSMGLSPLlvkeVFSIIEKINK 199
Cdd:TIGR01271 1359 KQLMCLARSILSKAKILLLDEPSAHLDPV----TLQIIRKTLK 1397
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
14-239 |
9.84e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 66.68 E-value: 9.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDE--VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDgevtrGEITFMGERIDNKSPEE 91
Cdd:PRK13650 4 IIEVKNLTFKYKEdqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES-----GQIIIDGDLLTEENVWD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 IVR--SGIFQVMEGRRI---VEDMTV--IENLRLgAFTRNDNEVEKDIEMV--FDYFPRLKERtglagyLSGGEQQMLAI 162
Cdd:PRK13650 79 IRHkiGMVFQNPDNQFVgatVEDDVAfgLENKGI-PHEEMKERVNEALELVgmQDFKEREPAR------LSGGQKQRVAI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 163 GRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNAN-FALhaADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDeVAL--SDRVLVMKNGQVESTSTPREL 227
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
12-240 |
1.99e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 65.58 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 12 EILLSVNNIEVVY--------DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-------TRGE 76
Cdd:PRK15112 2 ETLLEVRNLSKTFryrtgwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELliddhplHFGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 77 ITFMGERI----DNKSPEEIVRSGIFQVMegrriveDMTVIENLRLGAFTRND--NEVEKDIEMVFD---YFPRLkertg 147
Cdd:PRK15112 82 YSYRSQRIrmifQDPSTSLNPRQRISQIL-------DFPLRLNTDLEPEQREKqiIETLRQVGLLPDhasYYPHM----- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 148 lagyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMES 227
Cdd:PRK15112 150 ----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225
|
250
....*....|...
gi 559777052 228 GKIVLDGTKHELL 240
Cdd:PRK15112 226 GEVVERGSTADVL 238
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
34-184 |
2.04e-12 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 67.07 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSpeeivrsgifqvMEGRRIV------ 107
Cdd:NF033858 285 VSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLL-----PASEGEAWLFGQPVDAGD------------IATRRRVgymsqa 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 ----EDMTVIENLRLGA--FTRNDNEVEKDI-EMVfdyfprlkERTGLAGY-------LSGGEQQMLAIGRALMARPKMI 173
Cdd:NF033858 348 fslyGELTVRQNLELHArlFHLPAAEIAARVaEML--------ERFDLADVadalpdsLPLGIRQRLSLAVAVIHKPELL 419
|
170
....*....|.
gi 559777052 174 LLDEPSMGLSP 184
Cdd:NF033858 420 ILDEPTSGVDP 430
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
34-242 |
2.32e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 66.80 E-value: 2.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrgeITFMGERIDNKSPEEI--VRSG---IFQ----VMEGR 104
Cdd:PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGE-----IIFNGQRIDTLSPGKLqaLRRDiqfIFQdpyaSLDPR 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 105 RIVEDmTVIENLRLGAFTRNDNEVEKDIEMVfdyfprlkERTGL--------AGYLSGGEQQMLAIGRALMARPKMILLD 176
Cdd:PRK10261 418 QTVGD-SIMEPLRVHGLLPGKAAAARVAWLL--------ERVGLlpehawryPHEFSGGQRQRICIARALALNPKVIIAD 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 177 EPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
14-208 |
2.91e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 64.75 E-value: 2.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGE---ITFMGERI--DNKS 88
Cdd:PRK09544 4 LVSLENVSVSFGQRR-VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGklrIGYVPQKLylDTTL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 89 PeeivrsgifqvmegrrivedMTVIENLRLGAFTRNDnevekdiemvfDYFPRLKERTglAGY--------LSGGEQQML 160
Cdd:PRK09544 83 P--------------------LTVNRFLRLRPGTKKE-----------DILPALKRVQ--AGHlidapmqkLSGGETQRV 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 559777052 161 AIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLV 208
Cdd:PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV 177
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
34-249 |
3.52e-12 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 64.57 E-value: 3.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLkteDGEvtrGEITFMGERIDNKSPEE--IVRSGIFQvmeGRRIVEDMT 111
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL---PGS---GSIQFAGQPLEAWSAAElaRHRAYLSQ---QQTPPFAMP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 112 VIENLRLgafTRNDNEVEKDIEMVFDYfprLKERTGL-------AGYLSGGEQQ-------MLAIGRALMARPKMILLDE 177
Cdd:PRK03695 86 VFQYLTL---HQPDKTRTEAVASALNE---VAEALGLddklgrsVNQLSGGEWQrvrlaavVLQVWPDINPAGQLLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 178 PSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNNEDVKEFY 249
Cdd:PRK03695 160 PMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
30-208 |
7.78e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 63.05 E-value: 7.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedGEVTRGEITFMGERIDNKSP--EEIVRSGIF-QVMEgrri 106
Cdd:COG2401 45 VLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALK---GTPVAGCVDVPDNQFGREASliDAIGRKGDFkDAVE---- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 vedmtvienlRLGAFTRNDnevekdiemVFDYFPRLKErtglagyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLL 186
Cdd:COG2401 118 ----------LLNAVGLSD---------AVLWLRRFKE-------LSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQT 171
|
170 180
....*....|....*....|..
gi 559777052 187 VKEVFSIIEKINKDQGITMLLV 208
Cdd:COG2401 172 AKRVARNLQKLARRAGITLVVA 193
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-242 |
9.44e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 63.58 E-value: 9.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSpeeivrsgifQVMEGRRIVE- 108
Cdd:PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR----------DVLEFRRRVGm 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 --------DMTVIENLRLGAFT------RNDNEVEKDIEMVFDYFPRLKERTGLAGY-LSGGEQQMLAIGRALMARPKMI 173
Cdd:PRK14271 106 lfqrpnpfPMSIMDNVLAGVRAhklvprKEFRGVAQARLTEVGLWDAVKDRLSDSPFrLSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 174 LLDEPSMGLSPLLVKEVFSIIEKINKDqgITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
31-240 |
1.72e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 63.99 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVRSGI-FqvME---GRRI 106
Cdd:NF033858 17 LDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARK-----IQQGRVEVLGGDMADARHRRAVCPRIaY--MPqglGKNL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 VEDMTVIENL----RLgaFTRNDNEVEKDIEmvfdyfpRLKERTGL-------AGYLSGGEQQMLAIGRALMARPKMILL 175
Cdd:NF033858 90 YPTLSVFENLdffgRL--FGQDAAERRRRID-------ELLRATGLapfadrpAGKLSGGMKQKLGLCCALIHDPDLLIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 559777052 176 DEPSMGLSPLLVKEVFSIIEKINKDQ-GITmLLV-----EQNANFALHAAdygyiMESGKIVLDGTKHELL 240
Cdd:NF033858 161 DEPTTGVDPLSRRQFWELIDRIRAERpGMS-VLVataymEEAERFDWLVA-----MDAGRVLATGTPAELL 225
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
18-234 |
2.47e-11 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 61.78 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 18 NNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTR-GEItfmgeridnkspeeivrSG 96
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVrGRV-----------------SS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 97 IFQVMEGrrIVEDMTVIENLRLGA----FTRndneveKDIEMVFDYFprlKERTGLAGYL-------SGGEQQMLAIGRA 165
Cdd:cd03220 88 LLGLGGG--FNPELTGRENIYLNGrllgLSR------KEIDEKIDEI---IEFSELGDFIdlpvktySSGMKARLAFAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 166 LMARPKMILLDepsmglspllvkEVFSI---------IEKIN--KDQGITMLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03220 157 TALEPDILLID------------EVLAVgdaafqekcQRRLRelLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
28-242 |
2.49e-11 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 63.00 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtEDGEVTRGEITFMGERIDNKSPEE---IVR---SGIFQ-- 99
Cdd:COG4170 20 VKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITK-DNWHVTADRFRWNGIDLLKLSPRErrkIIGreiAMIFQep 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 100 -------VMEGRRIVEdmtVIENLRLG------AFTRNDNEVE-------KDIEMVFDYFPRlkertglagYLSGGEQQ- 158
Cdd:COG4170 99 sscldpsAKIGDQLIE---AIPSWTFKgkwwqrFKWRKKRAIEllhrvgiKDHKDIMNSYPH---------ELTEGECQk 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 159 -MLAIgrALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:COG4170 167 vMIAM--AIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTE 244
|
....*
gi 559777052 238 ELLNN 242
Cdd:COG4170 245 QILKS 249
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
15-204 |
3.78e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 60.25 E-value: 3.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV---TRGEITFMGERidnksPee 91
Cdd:cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIgmpEGEDLLFLPQR-----P-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 ivrsgifqvmegrrivedmtvienlrlgaftrndnevekdiemvfdYFPRLKERTGLAgY-----LSGGEQQMLAIGRAL 166
Cdd:cd03223 74 ----------------------------------------------YLPLGTLREQLI-YpwddvLSGGEQQRLAFARLL 106
|
170 180 190
....*....|....*....|....*....|....*...
gi 559777052 167 MARPKMILLDEPSMGLSPLLVKEVFSIIekinKDQGIT 204
Cdd:cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLL----KELGIT 140
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
9-208 |
5.14e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 62.42 E-value: 5.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIEVVY-----------DEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgevTRGEI 77
Cdd:PRK15134 270 EPASPLLDVEQLQVAFpirkgilkrtvDHNV-VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEI 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 78 TFMGERIDNKSPEEI--VRSGI---FQ----VMEGRRIVEDMtVIENLR-----LGAFTRNDNEVEKDIEMVFDyfPRLK 143
Cdd:PRK15134 343 WFDGQPLHNLNRRQLlpVRHRIqvvFQdpnsSLNPRLNVLQI-IEEGLRvhqptLSAAQREQQVIAVMEEVGLD--PETR 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 144 ERtgLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLV 208
Cdd:PRK15134 420 HR--YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFI 482
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
38-206 |
7.57e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 62.34 E-value: 7.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 38 VPKGQIVTLLGANGAGKSTTLKAISGllkteDGEVTRGEITFMGERIDNKSPEeiVRSGIFQVMEGRRIVEDMTVIENLR 117
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTG-----DTTVTSGDATVAGKSILTNISD--VHQNMGYCPQFDAIDDLLTGREHLY 2034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 118 LGAFTRN--DNEVEKDIEMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIE 195
Cdd:TIGR01257 2035 LYARLRGvpAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114
|
170
....*....|.
gi 559777052 196 KINKDQGITML 206
Cdd:TIGR01257 2115 SIIREGRAVVL 2125
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
15-179 |
8.65e-11 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 60.20 E-value: 8.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITfmgerIDNKSPEEI- 92
Cdd:cd03244 3 IEFKNVSLRYrPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-----ELSSGSIL-----IDGVDISKIg 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 ---VR---SGIFQ---VMEGrrivedmTVIENLR-LGAFTrnDNEVEKDIEMVfdyfpRLKERTGLAGY----------- 151
Cdd:cd03244 73 lhdLRsriSIIPQdpvLFSG-------TIRSNLDpFGEYS--DEELWQALERV-----GLKEFVESLPGgldtvveegge 138
|
170 180
....*....|....*....|....*....
gi 559777052 152 -LSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:cd03244 139 nLSVGQRQLLCLARALLRKSKILVLDEAT 167
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
30-177 |
1.13e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 61.37 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEiVRSGIfqvmeGrrIVED 109
Cdd:COG5265 373 ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFY-----DVTSGRILIDGQDIRDVTQAS-LRAAI-----G--IVPQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVI------ENLRLGAFTRNDNEVEKDIEMVF--DYFPRLKErtglaGY----------LSGGEQQMLAIGRALMARPK 171
Cdd:COG5265 440 DTVLfndtiaYNIAYGRPDASEEEVEAAARAAQihDFIESLPD-----GYdtrvgerglkLSGGEKQRVAIARTLLKNPP 514
|
....*.
gi 559777052 172 MILLDE 177
Cdd:COG5265 515 ILIFDE 520
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
29-230 |
1.94e-10 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 59.41 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-------TRGEITFMGERIDNKSPEEIVRSGIFQ-- 99
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVlldgkpiSQYEHKYLHSKVSLVGQEPVLFARSLQdn 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 100 VMEGRRIVEDMTVIEnlrlGAFTRNDNEVEKdiEMVFDYFPRLKERTGLagyLSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:cd03248 108 IAYGLQSCSFECVKE----AAQKAHAHSFIS--ELASGYDTEVGEKGSQ---LSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 559777052 180 MGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANFALHaADYGYIMESGKI 230
Cdd:cd03248 179 SALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
6-245 |
2.26e-10 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 60.80 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEILLSVNNIEVVYDEV-ILVLRGVSLEVPKGQIVTLLGANGAGKSTtlkaISGLLkTEDGEVTRGEITFMGERI 84
Cdd:PRK11176 333 RVIERAKGDIEFRNVTFTYPGKeVPALRNINFKIPAGKTVALVGRSGSGKST----IANLL-TRFYDIDEGEILLDGHDL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEIvRSGIFQVMEGRRIVEDmTVIENLrlgAFTRNDN----EVEKDIEMVF--DYFPRLKErtGL-------AGY 151
Cdd:PRK11176 408 RDYTLASL-RNQVALVSQNVHLFND-TIANNI---AYARTEQysreQIEEAARMAYamDFINKMDN--GLdtvigenGVL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQgiTMLLVEQNANfALHAADYGYIMESGKIV 231
Cdd:PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLS-TIEKADEILVVEDGEIV 557
|
250
....*....|....
gi 559777052 232 LDGTKHELLNNEDV 245
Cdd:PRK11176 558 ERGTHAELLAQNGV 571
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
28-234 |
2.27e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 58.81 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllKTEDGEVTRGEITFMGerIDNKSPEEIVRSGIFQVMEGRRIV 107
Cdd:cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN--RTEGNVSVEGDIHYNG--IPYKEFAEKYPGEIIYVSEEDVHF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDMTVIENLRLGAFTRNDNEVEKdiemvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLV 187
Cdd:cd03233 96 PTLTVRETLDFALRCKGNEFVRG---------------------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 559777052 188 KEVFSIIEKINKDQGIT-MLLVEQNANFALHAADYGYIMESGKIVLDG 234
Cdd:cd03233 155 LEILKCIRTMADVLKTTtFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
14-239 |
2.65e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 59.76 E-value: 2.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILVLRGV---SLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdGEVTRGEITFMGE---RIDNK 87
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVdriSYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQdlqRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 88 SPEEIVRSG---IFQ---------VMEGRRIVEDMTVIE--NLRlgafTRNDNEVE-------KDIEMVFDYFPRlkert 146
Cdd:PRK11022 82 ERRNLVGAEvamIFQdpmtslnpcYTVGFQIMEAIKVHQggNKK----TRRQRAIDllnqvgiPDPASRLDVYPH----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 147 glagYLSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIME 226
Cdd:PRK11022 153 ----QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228
|
250
....*....|...
gi 559777052 227 SGKIVLDGTKHEL 239
Cdd:PRK11022 229 AGQVVETGKAHDI 241
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
15-177 |
2.81e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 60.50 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitfmgeRIDNKSPEE--- 91
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI----------RLDGRPLSSlsh 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 92 -IVRSGIFQVMEGRRIVEDmTVIENLRLGaftRNDNE--VEKDIEMV-----FDYFPR-LKERTGLAG-YLSGGEQQMLA 161
Cdd:PRK10790 411 sVLRQGVAMVQQDPVVLAD-TFLANVTLG---RDISEeqVWQALETVqlaelARSLPDgLYTPLGEQGnNLSVGQKQLLA 486
|
170
....*....|....*.
gi 559777052 162 IGRALMARPKMILLDE 177
Cdd:PRK10790 487 LARVLVQTPQILILDE 502
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
15-241 |
2.88e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 59.48 E-value: 2.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEV-ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEdgevtrGEITFMGERIDNKSPEEIV 93
Cdd:cd03289 3 MTVKDLTAKYTEGgNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE------GDIQIDGVSWNSVPLQKWR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSgiFQVMEGRRIVEDMTVIENLRLGAfTRNDNEV-----EKDIEMVFDYFP-RLKERTGLAGY-LSGGEQQMLAIGRAL 166
Cdd:cd03289 77 KA--FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIwkvaeEVGLKSVIEQFPgQLDFVLVDGGCvLSHGHKQLMCLARSV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 559777052 167 MARPKMILLDEPSMGLSPLlvkeVFSIIEKINKD--QGITMLLVEQNANFALHAADYgYIMESGKIVLDGTKHELLN 241
Cdd:cd03289 154 LSKAKILLLDEPSAHLDPI----TYQVIRKTLKQafADCTVILSEHRIEAMLECQRF-LVIEENKVRQYDSIQKLLN 225
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
32-230 |
4.39e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 59.68 E-value: 4.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 32 RGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedgeVTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRR---IVE 108
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQssgLYL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENL------RLGAFTRNDNEvekdiEMVFDYFPR-----LKERTGLAGYLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK15439 355 DAPLAWNVcalthnRRGFWIKPARE-----NAVLERYRRalnikFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 559777052 178 PSMGLSPLLVKEVFSIIEKINKdQGITMLLVEQNANFALHAADYGYIMESGKI 230
Cdd:PRK15439 430 PTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
34-241 |
5.81e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 59.05 E-value: 5.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 34 VSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtEDGEVTRGEITFmgERID--NKSPEEIVR------SGIFQVME--- 102
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-DNWRVTADRMRF--DDIDllRLSPRERRKlvghnvSMIFQEPQscl 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 103 ------GRRIVEDMT------------------VIENL-RLGAftrndnEVEKDIEMVFDYfprlkertglagYLSGGEQ 157
Cdd:PRK15093 103 dpservGRQLMQNIPgwtykgrwwqrfgwrkrrAIELLhRVGI------KDHKDAMRSFPY------------ELTEGEC 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKH 237
Cdd:PRK15093 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSK 244
|
....
gi 559777052 238 ELLN 241
Cdd:PRK15093 245 ELVT 248
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
14-182 |
5.92e-10 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 58.40 E-value: 5.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-------TRGEITFMGE---- 82
Cdd:PRK11701 6 LLSVRGLTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhyrmrdgQLRDLYALSEaerr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 83 ---RID----NKSPEEIVRSgifQVMEGRRIVED-MTVIE----NLRLGAfTRNDNEVEKDIEMVfDYFPRLkertglag 150
Cdd:PRK11701 85 rllRTEwgfvHQHPRDGLRM---QVSAGGNIGERlMAVGArhygDIRATA-GDWLERVEIDAARI-DDLPTT-------- 151
|
170 180 190
....*....|....*....|....*....|..
gi 559777052 151 yLSGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:PRK11701 152 -FSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
8-179 |
6.15e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 59.18 E-value: 6.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 8 IEPAEIL----LSVNNIEVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMG-- 81
Cdd:TIGR03719 312 IPPGPRLgdkvIEAENLTKAFGDKLLI-DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVKLAyv 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 82 ----ERID-NKSPEEIVRSGIFQVMEGRRIVedmtvieNLR--LGAFTRNDNEVEKdiemvfdyfprlkertgLAGYLSG 154
Cdd:TIGR03719 391 dqsrDALDpNKTVWEEISGGLDIIKLGKREI-------PSRayVGRFNFKGSDQQK-----------------KVGQLSG 446
|
170 180
....*....|....*....|....*
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPS 179
Cdd:TIGR03719 447 GERNRVHLAKTLKSGGNVLLLDEPT 471
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
15-177 |
9.41e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 57.04 E-value: 9.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVY-DEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIdNKSPEEIV 93
Cdd:cd03369 7 IEVENLSVRYaPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-----EAEEGKIEIDGIDI-STIPLEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 94 RSGIfQVMEGRRIVEDMTVIENLrlgaftrnDNEVEKDIEMVFDYFpRLKErTGLAgyLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03369 81 RSSL-TIIPQDPTLFSGTIRSNL--------DPFDEYSDEEIYGAL-RVSE-GGLN--LSQGQRQLLCLARALLKRPRVL 147
|
....
gi 559777052 174 LLDE 177
Cdd:cd03369 148 VLDE 151
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
31-182 |
1.64e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 56.10 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllKTEDGEVTrGEITFMGERIdnksPEEIVR-SGIFQVMEgrrIVED 109
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVIT-GEILINGRPL----DKNFQRsTGYVEQQD---VHSP 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 110 M-TVIENLRLGAFTRNdnevekdiemvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMILLDEPSMGL 182
Cdd:cd03232 93 NlTVREALRFSALLRG---------------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
152-244 |
1.68e-09 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 58.30 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMARPKMI--LLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVE---QNANFALHAADYG--YI 224
Cdd:PRK00635 477 LSGGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEhdeQMISLADRIIDIGpgAG 555
|
90 100
....*....|....*....|
gi 559777052 225 MESGKIVLDGTKHELLNNED 244
Cdd:PRK00635 556 IFGGEVLFNGSPREFLAKSD 575
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
14-98 |
2.00e-09 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 56.72 E-value: 2.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGllkTEDGEVTRGEITFMGERIDNKSPEEIV 93
Cdd:PRK09580 1 MLSIKDLHVSVEDKA-ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG---REDYEVTGGTVEFKGKDLLELSPEDRA 76
|
....*
gi 559777052 94 RSGIF 98
Cdd:PRK09580 77 GEGIF 81
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
31-242 |
2.65e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 56.90 E-value: 2.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTlkaisGLLKTEDGEVTRGEITFMGERIDNKSPEEI--VRSGI---FQVMEG-- 103
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPEAQklLRQKIqivFQNPYGsl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 104 --RR----IVEDMTVIeNLRLGAFTRndneVEKDIEMV---------FDYFPRLkertglagyLSGGEQQMLAIGRALMA 168
Cdd:PRK11308 106 npRKkvgqILEEPLLI-NTSLSAAER----REKALAMMakvglrpehYDRYPHM---------FSGGQRQRIAIARALML 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 169 RPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PRK11308 172 DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
31-240 |
3.46e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 57.26 E-value: 3.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVT-RGEITFMGER--IDNKSPEEIVRSG-------IFQV 100
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHmKGSVAYVPQQawIQNDSLRENILFGkalnekyYQQV 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 101 MEGRRIVEDMTVIEnlrlgafTRNDNEV-EKDIEmvfdyfprlkertglagyLSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:TIGR00957 734 LEACALLPDLEILP-------SGDRTEIgEKGVN------------------LSGGQKQRVSLARAVYSNADIYLFDDPL 788
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 559777052 180 MGLSPLLVKEVFsiiEKINKDQGI----TMLLVEQNANFaLHAADYGYIMESGKIVLDGTKHELL 240
Cdd:TIGR00957 789 SAVDAHVGKHIF---EHVIGPEGVlknkTRILVTHGISY-LPQVDVIIVMSGGKISEMGSYQELL 849
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
31-177 |
6.90e-09 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 56.12 E-value: 6.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLkaisGLL-KTEDGEVtrGEITFMGERIDNKSPEEIVRS--GIFQvmegrriv 107
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLI----NLLqRVFDPQS--GRILIDGTDIRTVTRASLRRNiaVVFQ-------- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 108 EDM----TVIENLRLGAFTRNDNEVEKDIEM--VFDYFPR----LKERTGLAG-YLSGGEQQMLAIGRALMARPKMILLD 176
Cdd:PRK13657 417 DAGlfnrSIEDNIRVGRPDATDEEMRAAAERaqAHDFIERkpdgYDTVVGERGrQLSGGERQRLAIARALLKDPPILILD 496
|
.
gi 559777052 177 E 177
Cdd:PRK13657 497 E 497
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
6-209 |
9.65e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 55.59 E-value: 9.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEILLSVNNIEVVYDevilvlrGVSLEVPKGQI-----VTLLGANGAGKSTTLKAISGLLKTEDGEVTRgeitfm 80
Cdd:PRK13409 332 RDESERETLVEYPDLTKKLG-------DFSLEVEGGEIyegevIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP------ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 81 GERIDNKsPEEIvrsgifqvmegrRIVEDMTVIENLR--LGAFTRN--DNEVEK--DIEMVFDYfpRLKErtglagyLSG 154
Cdd:PRK13409 399 ELKISYK-PQYI------------KPDYDGTVEDLLRsiTDDLGSSyyKSEIIKplQLERLLDK--NVKD-------LSG 456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 155 GEQQMLAIGRALMARPKMILLDEPSmglSPLLVKE---VFSIIEKINKDQGITMLLVE 209
Cdd:PRK13409 457 GELQRVAIAACLSRDADLYLLDEPS---AHLDVEQrlaVAKAIRRIAEEREATALVVD 511
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
6-239 |
1.51e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 55.25 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 6 RDIEPAEILLSVNNIEVVYDE---VILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFmge 82
Cdd:PRK10261 4 SDELDARDVLAVENLNIAFMQeqqKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLL--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 83 ridNKSPEEIVRSGIFQVMEGRRI---------VEDMT-----------VIENLRL-GAFTRNDN--EVEKDIEMVfdyf 139
Cdd:PRK10261 81 ---RRRSRQVIELSEQSAAQMRHVrgadmamifQEPMTslnpvftvgeqIAESIRLhQGASREEAmvEAKRMLDQV---- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 140 pRLKE-RTGLAGY---LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFA 215
Cdd:PRK10261 154 -RIPEaQTILSRYphqLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV 232
|
250 260
....*....|....*....|....
gi 559777052 216 LHAADYGYIMESGKIVLDGTKHEL 239
Cdd:PRK10261 233 AEIADRVLVMYQGEAVETGSVEQI 256
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
30-245 |
1.75e-08 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 55.11 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERI---DNKSPEEIVRS-GIFQVMEGRr 105
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-----QPTGGQVLLDGVPLvqyDHHYLHRQVALvGQEPVLFSG- 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 106 ivedmTVIENLRLGAFTRNDNEVEKDIEMVF----------DYFPRLKERTGLagyLSGGEQQMLAIGRALMARPKMILL 175
Cdd:TIGR00958 570 -----SVRENIAYGLTDTPDEEIMAAAKAANahdfimefpnGYDTEVGEKGSQ---LSGGQKQRIAIARALVRKPRVLIL 641
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 559777052 176 DEPSMGLSpllvKEVFSIIEKINKDQGITMLLVEQNanfaLHA---ADYGYIMESGKIVLDGTKHELLNNEDV 245
Cdd:TIGR00958 642 DEATSALD----AECEQLLQESRSRASRTVLLIAHR----LSTverADQILVLKKGSVVEMGTHKQLMEDQGC 706
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
5-209 |
1.81e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 54.79 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVVYDEVIL-VLRGvslEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitFMGER 83
Cdd:COG1245 332 PRREKEEETLVEYPDLTKSYGGFSLeVEGG---EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV------DEDLK 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 IDNKsPEEIVRSgifqvmegrrivEDMTVIENLRLGAFTRND-----NEVEK--DIEMVFDyfPRLKErtglagyLSGGE 156
Cdd:COG1245 403 ISYK-PQYISPD------------YDGTVEEFLRSANTDDFGssyykTEIIKplGLEKLLD--KNVKD-------LSGGE 460
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 157 QQMLAIGRALMARPKMILLDEPSmglSPLLVKE---VFSIIEKINKDQGITMLLVE 209
Cdd:COG1245 461 LQRVAIAACLSRDADLYLLDEPS---AHLDVEQrlaVAKAIRRFAENRGKTAMVVD 513
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
11-178 |
2.64e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 54.17 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 11 AEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMG------ERI 84
Cdd:TIGR03719 1 AQYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPGIKVGylpqepQLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 DNKSPEEIVRSGifqVMEGRRIV--------------EDMTVI--ENLRLGAF--TRNDNEVEKDIEMVFDYFpRLKERT 146
Cdd:TIGR03719 81 PTKTVRENVEEG---VAEIKDALdrfneisakyaepdADFDKLaaEQAELQEIidAADAWDLDSQLEIAMDAL-RCPPWD 156
|
170 180 190
....*....|....*....|....*....|..
gi 559777052 147 GLAGYLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
28-228 |
2.71e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.10 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 28 ILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-----TRGEITFMGERIDNKSPEEIVRSgifqvme 102
Cdd:cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVhwsnkNESEPSFEATRSRNRYSVAYAAQ------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 103 gRRIVEDMTVIENLRLGA-FTRNDNE-------VEKDIEMV-FDYFPRLKERtGLAgyLSGGEQQMLAIGRALMARPKMI 173
Cdd:cd03290 87 -KPWLLNATVEENITFGSpFNKQRYKavtdacsLQPDIDLLpFGDQTEIGER-GIN--LSGGQRQRICVARALYQNTNIV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 174 LLDEP----SMGLSPLLVKEVfsiIEKINKDQGITMLLVEQNANFALHaADYGYIMESG 228
Cdd:cd03290 163 FLDDPfsalDIHLSDHLMQEG---ILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
100-239 |
2.90e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.97 E-value: 2.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 100 VMEGRRivEDMTVIENL----RLGAFTRNDNEVEKDieMVFDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMILL 175
Cdd:NF000106 93 VR*GRR--ESFSGRENLymigR*LDLSRKDARARAD--ELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYL 168
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 559777052 176 DEPSMGLSPLLVKEVFSIIEKINKDqGITMLLVEQNANFALHAADYGYIMESGKIVLDGTKHEL 239
Cdd:NF000106 169 DEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
17-179 |
4.12e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.58 E-value: 4.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 17 VNNIEVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMG------ERID-NKSP 89
Cdd:PRK11819 327 AENLSKSFGDRLLI-DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAyvdqsrDALDpNKTV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEIVRSGIFQVMEGRRIVedmtvieNLR--LGAFTRNDNEVEKdiemvfdyfprlkertgLAGYLSGGEQQMLAIGRALM 167
Cdd:PRK11819 406 WEEISGGLDIIKVGNREI-------PSRayVGRFNFKGGDQQK-----------------KVGVLSGGERNRLHLAKTLK 461
|
170
....*....|..
gi 559777052 168 ARPKMILLDEPS 179
Cdd:PRK11819 462 QGGNVLLLDEPT 473
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
31-183 |
5.97e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 53.25 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEvtrGEITFMGERIDNKSPEEIVRSGIFQVMEGRRIVEDM 110
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSYE---GEILFDGEVCRFKDIRDSEALGIVIIHQELALIPYL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 TVIENLRLGaftrndNEVEK----DIEMVFDYFPRLKERTGLA-------GYLSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:NF040905 94 SIAENIFLG------NERAKrgviDWNETNRRARELLAKVGLDespdtlvTDIGVGKQQLVEIAKALSKDVKLLILDEPT 167
|
....
gi 559777052 180 MGLS 183
Cdd:NF040905 168 AALN 171
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
23-182 |
8.56e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 52.93 E-value: 8.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 23 VYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKA---------------ISGLLKTEDgevTRGEITFMGERIDNK 87
Cdd:PLN03140 888 VTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVlagrktggyiegdirISGFPKKQE---TFARISGYCEQNDIH 964
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 88 SPEeivrsgifqvmegrrivedMTVIENLRLGAFTRNDNEVEKDIEMVF-DYFPRLKER-------TGLAGY--LSGGEQ 157
Cdd:PLN03140 965 SPQ-------------------VTVRESLIYSAFLRLPKEVSKEEKMMFvDEVMELVELdnlkdaiVGLPGVtgLSTEQR 1025
|
170 180
....*....|....*....|....*
gi 559777052 158 QMLAIGRALMARPKMILLDEPSMGL 182
Cdd:PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGL 1050
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
30-268 |
9.06e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 52.99 E-value: 9.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTR-GEITFmgeridnkSPEeivrsgIFQVMEGrrive 108
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHsGRISF--------SPQ------TSWIMPG----- 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 dmTVIENLRLGA------FTR--NDNEVEKDIEMvfdyFPRlKERTGLAG---YLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:TIGR01271 502 --TIKDNIIFGLsydeyrYTSviKACQLEEDIAL----FPE-KDKTVLGEggiTLSGGQRARISLARAVYKDADLYLLDS 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 178 PSMGLSPLLVKEVF-SIIEKINKDQgiTMLLVEQNANFaLHAADYGYIMESGKIVLDGTKHELLNNE-DVKEFYLGGgde 255
Cdd:TIGR01271 575 PFTHLDVVTEKEIFeSCLCKLMSNK--TRILVTSKLEH-LKKADKILLLHEGVCYFYGTFSELQAKRpDFSSLLLGL--- 648
|
250
....*....|...
gi 559777052 256 erKSFKNLKSYKR 268
Cdd:TIGR01271 649 --EAFDNFSAERR 659
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
30-243 |
1.46e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 52.29 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTrgeitfmgerIDNKspeEIVRSGIFQVMEGRRIVED 109
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM----------IDDC---DVAKFGLTDLRRVLSIIPQ 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIEN----LRLGAFTR-NDNEVEKDIEM--VFDYFPR----LKERTGLAG-YLSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PLN03232 1318 SPVLFSgtvrFNIDPFSEhNDADLWEALERahIKDVIDRnpfgLDAEVSEGGeNFSVGQRQLLSLARALLRRSKILVLDE 1397
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 559777052 178 PSMGLSpllvKEVFSIIEKINKDQ--GITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:PLN03232 1398 ATASVD----VRTDSLIQRTIREEfkSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-181 |
1.57e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 51.71 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 5 ARDIEPAEILLSVNNIEVvYDEVI---LVLRGVSLEVPKGQIVTLLGANGAGKsTTLkAISGLLKTEdGEVTRGEITFMG 81
Cdd:NF040905 248 ERTPKIGEVVFEVKNWTV-YHPLHperKVVDDVSLNVRRGEIVGIAGLMGAGR-TEL-AMSVFGRSY-GRNISGTVFKDG 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 82 ERIDNKSPEEIVRSGIFQVMEGRR---IVEDMTVIENL---RLGAFTR----NDNEVEKDIEmvfDYFPRLKERTG---- 147
Cdd:NF040905 324 KEVDVSTVSDAIDAGLAYVTEDRKgygLNLIDDIKRNItlaNLGKVSRrgviDENEEIKVAE---EYRKKMNIKTPsvfq 400
|
170 180 190
....*....|....*....|....*....|....
gi 559777052 148 LAGYLSGGEQQMLAIGRALMARPKMILLDEPSMG 181
Cdd:NF040905 401 KVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRG 434
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
19-210 |
3.04e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 51.29 E-value: 3.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 19 NIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVT---RGEITFMGER------------ 83
Cdd:TIGR00954 456 NIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTkpaKGKLFYVPQRpymtlgtlrdqi 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 IDNKSPEEIVRSGIfqvmeGRRIVEDMtvIENLRLgaftrnDNEVEKdiEMVFDYFPRLKErtglagYLSGGEQQMLAIG 163
Cdd:TIGR00954 536 IYPDSSEDMKRRGL-----SDKDLEQI--LDNVQL------THILER--EGGWSAVQDWMD------VLSGGEKQRIAMA 594
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 559777052 164 RALMARPKMILLDEPSMGLSPllvkEVFSIIEKINKDQGITMLLVEQ 210
Cdd:TIGR00954 595 RLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITLFSVSH 637
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
8-242 |
3.74e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 51.13 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 8 IEPAEILLSVNNIEVVYDEVIL--VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLK-TEDGEVT-RGEITFMGEr 83
Cdd:PLN03232 608 LQPGAPAISIKNGYFSWDSKTSkpTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELShAETSSVViRGSVAYVPQ- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 84 idnkspeeivRSGIFqvmegrriveDMTVIENLRLGAftrnDNEVEK-----DIEMV---FDYFP-RLKERTGLAGY-LS 153
Cdd:PLN03232 687 ----------VSWIF----------NATVRENILFGS----DFESERywraiDVTALqhdLDLLPgRDLTEIGERGVnIS 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 154 GGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEKiNKDQGITMLLVEQNANFaLHAADYGYIMESGKIVLD 233
Cdd:PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK-DELKGKTRVLVTNQLHF-LPLMDRIILVSEGMIKEE 820
|
....*....
gi 559777052 234 GTKHELLNN 242
Cdd:PLN03232 821 GTFAELSKS 829
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
30-182 |
7.31e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 49.88 E-value: 7.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKtedGEVTRGEITfmgerIDNKSPEEIVRSGIFQVMEGRRIVED 109
Cdd:PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTIL-----ANNRKPTKQILKRTGFVTQDDILYPH 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIENLRLGAFTRNDNEVEKDI-----EMVFDYFPRLKERTGLAGY-----LSGGEQQMLAIGRALMARPKMILLDEPS 179
Cdd:PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEkilvaESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPT 234
|
...
gi 559777052 180 MGL 182
Cdd:PLN03211 235 SGL 237
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
31-221 |
8.25e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.09 E-value: 8.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAIsgllktedgevtrgeITFMGERIDNKSPEEIVRSGIFQVMEGRRIVedm 110
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG---------------LYASGKARLISFLPKFSRNKLIFIDQLQFLI--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 111 tvieNLRLGAFTRNDNevekdiemvfdyfprlkertglAGYLSGGEQQMLAIGRALMARPK--MILLDEPSMGLSPllvK 188
Cdd:cd03238 73 ----DVGLGYLTLGQK----------------------LSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQ---Q 123
|
170 180 190
....*....|....*....|....*....|....*
gi 559777052 189 EVFSIIEKINK--DQGITMLLVEQNANFaLHAADY 221
Cdd:cd03238 124 DINQLLEVIKGliDLGNTVILIEHNLDV-LSSADW 157
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
31-242 |
1.17e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 49.74 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKT-EDGEVT-RGEITFMGERidnkspeeivrSGIFqvmegrrive 108
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrSDASVViRGTVAYVPQV-----------SWIF---------- 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLRLGAfTRNDNEVEKDIEMV-----FDYFP-----RLKERtGLAgyLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PLN03130 692 NATVRDNILFGS-PFDPERYERAIDVTalqhdLDLLPggdltEIGER-GVN--ISGGQKQRVSMARAVYSNSDVYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 179 SMGLSPLLVKEVFsiiEKINKD--QGITMLLVEQNANFaLHAADYGYIMESGKIVLDGTKHELLNN 242
Cdd:PLN03130 768 LSALDAHVGRQVF---DKCIKDelRGKTRVLVTNQLHF-LSQVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
97-244 |
1.23e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.64 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 97 IFQVMEGRRIVEDMTVIENLRLGA--FTRNDNEVEKDIEMVFDYFPRL--KERTGLAGY---LSGGEQQMLAIGRALMAR 169
Cdd:PTZ00265 1297 LFSIVSQEPMLFNMSIYENIKFGKedATREDVKRACKFAAIDEFIESLpnKYDTNVGPYgksLSGGQKQRIAIARALLRE 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 170 PKMILLDEPSMGLSP----LLVKEVFSIIEKINKdqgiTMLLVeqnanfalhAADYGYIMESGKIVL------------- 232
Cdd:PTZ00265 1377 PKILLLDEATSSLDSnsekLIEKTIVDIKDKADK----TIITI---------AHRIASIKRSDKIVVfnnpdrtgsfvqa 1443
|
170
....*....|..
gi 559777052 233 DGTKHELLNNED 244
Cdd:PTZ00265 1444 HGTHEELLSVQD 1455
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
35-240 |
2.21e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 48.47 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 35 SLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGeitFmgERIDNKSPEEIvrsgifqvmegRRIVEDmtvie 114
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQ---F--SHITRLSFEQL-----------QKLVSD----- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 115 nlrlgAFTRNDN----EVEKDI-----EMVFDYFP------RLKERTGLAG-------YLSGGEQQMLAIGRALMARPKM 172
Cdd:PRK10938 82 -----EWQRNNTdmlsPGEDDTgrttaEIIQDEVKdparceQLAQQFGITAlldrrfkYLSTGETRKTLLCQALMSEPDL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 173 ILLDEPSMGLSPLLVKEVFSIIEKINKdQGITMLLV----EQNANFALHAAdygyIMESGKIVLDGTKHELL 240
Cdd:PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVlnrfDEIPDFVQFAG----VLADCTLAETGEREEIL 223
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
30-177 |
2.92e-06 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 48.17 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIvRSGIFQVMEGRRIVED 109
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-----DVSEGDIRFHDIPLTKLQLDSW-RSRLAVVSQTPFLFSD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 mTVIENLRLGAFTRNDNEVEKDIEM--VFDYFPRLKErtglaGY----------LSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PRK10789 404 -TVANNIALGRPDATQQEIEHVARLasVHDDILRLPQ-----GYdtevgergvmLSGGQKQRISIARALLLNAEILILDD 477
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
149-252 |
4.06e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 47.70 E-value: 4.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 149 AGYLSGGEQQMLA----IGRALMArpKMILLDEPSMGLSPllvKEVFSIIEKIN--KDQGITMLLVEQNANfALHAADY- 221
Cdd:TIGR00630 486 AGTLSGGEAQRIRlatqIGSGLTG--VLYVLDEPSIGLHQ---RDNRRLINTLKrlRDLGNTLIVVEHDED-TIRAADYv 559
|
90 100 110
....*....|....*....|....*....|....*..
gi 559777052 222 -----GYIMESGKIVLDGTKHELLNNED-VKEFYLGG 252
Cdd:TIGR00630 560 idigpGAGEHGGEVVASGTPEEILANPDsLTGQYLSG 596
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
30-234 |
1.06e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.70 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVtrgeitfMGERIDNKSPEE------IVRSGIFQVMEg 103
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------WAERSIAYVPQQawimnaTVRGNILFFDE- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 104 rrivEDMTvienlRLGAFTRNdNEVEKDIEMVFDyfpRLKERTGLAGY-LSGGEQQMLAIGRALMARPKMILLDEPsmgL 182
Cdd:PTZ00243 747 ----EDAA-----RLADAVRV-SQLEADLAQLGG---GLETEIGEKGVnLSGGQKARVSLARAVYANRDVYLLDDP---L 810
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 183 SPL-------LVKEVFsiiekINKDQGITMLLveqnANFALHA---ADYGYIMESGKIVLDG 234
Cdd:PTZ00243 811 SALdahvgerVVEECF-----LGALAGKTRVL----ATHQVHVvprADYVVALGDGRVEFSG 863
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
35-209 |
1.08e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 46.34 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 35 SLEVPK-GQIVTLLGANGAGKSTTLKAISGLLK----TEDGEVTRGEIT--FMG-------ERIDNKS------PEEI-- 92
Cdd:PRK13409 92 GLPIPKeGKVTGILGPNGIGKTTAVKILSGELIpnlgDYEEEPSWDEVLkrFRGtelqnyfKKLYNGEikvvhkPQYVdl 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 --------VRSGIFQVMEgRRIVEDmtVIENLRLgaftrnDNEVEKDIEmvfdyfprlkertglagYLSGGEQQMLAIGR 164
Cdd:PRK13409 172 ipkvfkgkVRELLKKVDE-RGKLDE--VVERLGL------ENILDRDIS-----------------ELSGGELQRVAIAA 225
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 559777052 165 ALMARPKMILLDEPSmglSPLLVKE---VFSIIEKINKDQgiTMLLVE 209
Cdd:PRK13409 226 ALLRDADFYFFDEPT---SYLDIRQrlnVARLIRELAEGK--YVLVVE 268
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
14-178 |
1.09e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.48 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRgEITFMGERIDNKSPEEI- 92
Cdd:PRK11147 3 LISIHGAWLSFSDAPL-LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY-EQDLIVARLQQDPPRNVe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 ------VRSGIFQVME--------GRRIVEDMT------------VIENLRLGAFTRNDNEVEKDIEmvfdyfprLKERT 146
Cdd:PRK11147 81 gtvydfVAEGIEEQAEylkryhdiSHLVETDPSeknlnelaklqeQLDHHNLWQLENRINEVLAQLG--------LDPDA 152
|
170 180 190
....*....|....*....|....*....|..
gi 559777052 147 GLAGyLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PRK11147 153 ALSS-LSGGWLRKAALGRALVSNPDVLLLDEP 183
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
35-209 |
1.11e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 46.32 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 35 SLEVPK-GQIVTLLGANGAGKSTTLKAISGLLKTE----DGEVTRGEI--TFMG-------ERIDNKS------PEEI-- 92
Cdd:COG1245 92 GLPVPKkGKVTGILGPNGIGKSTALKILSGELKPNlgdyDEEPSWDEVlkRFRGtelqdyfKKLANGEikvahkPQYVdl 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 93 ---VRSG-IFQVMEG---RRIVEDmtVIENLRLgaftrnDNEVEKDIemvfdyfprlkertglaGYLSGGEQQMLAIGRA 165
Cdd:COG1245 172 ipkVFKGtVRELLEKvdeRGKLDE--LAEKLGL------ENILDRDI-----------------SELSGGELQRVAIAAA 226
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 559777052 166 LMARPKMILLDEPSmglSPLLVKE---VFSIIEKINKDqGITMLLVE 209
Cdd:COG1245 227 LLRDADFYFFDEPS---SYLDIYQrlnVARLIRELAEE-GKYVLVVE 269
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
29-190 |
1.23e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.31 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 29 LVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITFMGERIDNKSPEEIVRSgiFQVMEGRRIVE 108
Cdd:PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-----EVCGGEIRVNGREIGAYGLRELRRQ--FSMIPQDPVLF 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 109 DMTVIENLR--LGAftrNDNEVEKDIEMVfdyfpRLKERT-------------GLAGYlSGGEQQMLAIGRALMAR-PKM 172
Cdd:PTZ00243 1397 DGTVRQNVDpfLEA---SSAEVWAALELV-----GLRERVasesegidsrvleGGSNY-SVGQRQLMCMARALLKKgSGF 1467
|
170
....*....|....*...
gi 559777052 173 ILLDEPSMGLSPLLVKEV 190
Cdd:PTZ00243 1468 ILMDEATANIDPALDRQI 1485
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
14-179 |
1.98e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 14 LLSVNNIEVVYDEVIlVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV-----------TRGEITFMge 82
Cdd:PRK10636 312 LLKMEKVSAGYGDRI-ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIglakgiklgyfAQHQLEFL-- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 83 RIDNKSPEEIVRSGIfQVMEgrrivedmtviENLR--LGAFTRNDNEVekdiemvfdyfprlkerTGLAGYLSGGEQQML 160
Cdd:PRK10636 389 RADESPLQHLARLAP-QELE-----------QKLRdyLGGFGFQGDKV-----------------TEETRRFSGGEKARL 439
|
170
....*....|....*....
gi 559777052 161 AIGRALMARPKMILLDEPS 179
Cdd:PRK10636 440 VLALIVWQRPNLLLLDEPT 458
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
9-178 |
2.52e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.11 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 9 EPAEILLSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEitfmGERI---- 84
Cdd:PRK11819 1 MMAQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----GIKVgylp 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 85 ------DNKSPEEIVRSGIFQVME--------GRRIVEDMTVIENL--RLGAF-----TRNDNEVEKDIEMVFDYFpRLK 143
Cdd:PRK11819 77 qepqldPEKTVRENVEEGVAEVKAaldrfneiYAAYAEPDADFDALaaEQGELqeiidAADAWDLDSQLEIAMDAL-RCP 155
|
170 180 190
....*....|....*....|....*....|....*
gi 559777052 144 ERTGLAGYLSGGEQQMLAIGRALMARPKMILLDEP 178
Cdd:PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
43-183 |
2.63e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 44.09 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 43 IVTLLGANGAGKSTTLKAISGLLKTedgevTRGEITFMGERIDNkspeeIVRSGIFQVMEGRRIVEDMTVIENLRLGAFT 122
Cdd:PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQP-----SSGNIYYKNCNINN-----IAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 559777052 123 RNDNEVekdIEMVFDYFpRLKERTGLAGY-LSGGEQQMLAIGRALMARPKMILLDEPSMGLS 183
Cdd:PRK13541 98 YNSAET---LYAAIHYF-KLHDLLDEKCYsLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
31-201 |
2.65e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 44.99 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGqIVTLLGANGAGKSTTLKAISGLL--------------KTEDGEVTRGEITF---------MGERIDNK 87
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLgpsssrkfdeedfyLGDDPDLPEIEIELtfgsllsrlLRLLLKEE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 88 SPEEI----------VRSGIFQVMEG-RRIVEDMTVIENLRLGAFTRNDNEVEKDIEMVFDYFPRLKERtglagYLSGGE 156
Cdd:COG3593 93 DKEELeealeelneeLKEALKALNELlSEYLKELLDGLDLELELSLDELEDLLKSLSLRIEDGKELPLD-----RLGSGF 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 559777052 157 QQM--LAIGRALM-----ARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQ 201
Cdd:COG3593 168 QRLilLALLSALAelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKP 219
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
30-273 |
4.60e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 44.73 E-value: 4.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLktedgEVTRGEITfmgerIDNKspeEIVRSGIFQVMEGRRIVED 109
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-----ELERGRIL-----IDGC---DISKFGLMDLRKVLGIIPQ 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 110 MTVIEN----LRLGAFTR-NDNEVEKDIEMVF--DYFPR----LKERTGLAGY-LSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:PLN03130 1321 APVLFSgtvrFNLDPFNEhNDADLWESLERAHlkDVIRRnslgLDAEVSEAGEnFSVGQRQLLSLARALLRRSKILVLDE 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 178 PS----MGLSPLLVKevfSIIEKInkdQGITMLLVEQNANFALHaADYGYIMESGKIVLDGTKHELLNNEDvKEF----- 248
Cdd:PLN03130 1401 ATaavdVRTDALIQK---TIREEF---KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG-SAFskmvq 1472
|
250 260 270
....*....|....*....|....*....|....*..
gi 559777052 249 --------YL----GGGDEERKSFKNLKSYKRRKRWL 273
Cdd:PLN03130 1473 stgaanaqYLrslvFGGDEDRLAREESKALDGQRKWL 1509
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
30-239 |
5.93e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 43.69 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 30 VLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTR-GEITFmGERIDNKSPEEIVRSGIFQVM--EGRRi 106
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHsGRISF-SSQFSWIMPGTIKENIIFGVSydEYRY- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 107 vedMTVIENLRLgaftrndnevEKDIEMvfdyFPRlKERTGLAG---YLSGGEQQMLAIGRALMARPKMILLDEPSMGLS 183
Cdd:cd03291 130 ---KSVVKACQL----------EEDITK----FPE-KDNTVLGEggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 559777052 184 PLLVKEVF-SIIEKI--NKDQGITMLLVEQnanfaLHAADYGYIMESGKIVLDGTKHEL 239
Cdd:cd03291 192 VFTEKEIFeSCVCKLmaNKTRILVTSKMEH-----LKKADKILILHEGSSYFYGTFSEL 245
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
13-214 |
6.80e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.79 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 13 ILLSVNNIEVVYDEVILVlRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRG---EITFMGERIDNKSP 89
Cdd:PRK11147 318 IVFEMENVNYQIDGKQLV-KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGtklEVAYFDQHRAELDP 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 90 EEivrsgifqvmegrrivedmTVIENLRLGaftRNDNEVEKDIEMVFDY-----FPRLKERTGLAGyLSGGEQQMLAIGR 164
Cdd:PRK11147 397 EK-------------------TVMDNLAEG---KQEVMVNGRPRHVLGYlqdflFHPKRAMTPVKA-LSGGERNRLLLAR 453
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 559777052 165 ALMARPKMILLDEPSMGLSpllvKEVFSIIEKINKD-QGiTMLLVEQNANF 214
Cdd:PRK11147 454 LFLKPSNLLILDEPTNDLD----VETLELLEELLDSyQG-TVLLVSHDRQF 499
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
15-178 |
7.33e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 43.73 E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILvLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEeivr 94
Cdd:PRK15064 320 LEVENLTKGFDNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD---- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 sgiFQvmegrrivEDMTVIEnlRLGAFTRndnevEKDIE-MVFDYFPRL----KERTGLAGYLSGGEQQMLAIGRALMAR 169
Cdd:PRK15064 395 ---FE--------NDLTLFD--WMSQWRQ-----EGDDEqAVRGTLGRLlfsqDDIKKSVKVLSGGEKGRMLFGKLMMQK 456
|
....*....
gi 559777052 170 PKMILLDEP 178
Cdd:PRK15064 457 PNVLVMDEP 465
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
31-221 |
9.90e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 42.63 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKST----TLKA---------ISGLLKTEDGEVTRGEItfmgERIDNKSPEEIVRSGI 97
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSlafdTIYAegqrryvesLSAYARQFLGQMDKPDV----DSIEGLSPAIAIDQKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 98 FQVmEGRRIVEDMTVIEN-LRLgAFTRND--NEVEKDIEMVFDYFpRLkERTglAGYLSGGEQQMLA----IGRALMArp 170
Cdd:cd03270 87 TSR-NPRSTVGTVTEIYDyLRL-LFARVGirERLGFLVDVGLGYL-TL-SRS--APTLSGGEAQRIRlatqIGSGLTG-- 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 559777052 171 KMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANFALHaADY 221
Cdd:cd03270 159 VLYVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRA-ADH 207
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
149-243 |
1.59e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.09 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 149 AGYLSGGEQQMLAIGRALMARPKMILLDEPSmglSPLLVKEVFSIIEKINKDQG----ITMLLVEQ-------NANFALH 217
Cdd:PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEAT---SSLDNKSEYLVQKTINNLKGnenrITIIIAHRlstiryaNTIFVLS 653
|
90 100
....*....|....*....|....*.
gi 559777052 218 AADYGYIMESGKIVLDGTKHELLNNE 243
Cdd:PTZ00265 654 NRERGSTVDVDIIGEDPTKDNKENNN 679
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
152-207 |
2.00e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 42.31 E-value: 2.00e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 559777052 152 LSGGEQQMLAIGRALMARPKMILLDEPSMGLSPLLVKEVFSIIEkINKDQGITMLL 207
Cdd:PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVD-VLISEGETQLL 456
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
36-209 |
2.26e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 41.58 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 36 LEVPK-GQIVTLLGANGAGKSTTLKAISGLLKTEdgevtrgeitfMGERIDNKSPEEIV---RSGIFQVMEGRRIVEDMT 111
Cdd:cd03236 20 LPVPReGQVLGLVGPNGIGKSTALKILAGKLKPN-----------LGKFDDPPDWDEILdefRGSELQNYFTKLLEGDVK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 112 VIE-----NLRLGAFTRNDNEV--EKDIEMVFDYfprLKERTGLAGY-------LSGGEQQMLAIGRALMARPKMILLDE 177
Cdd:cd03236 89 VIVkpqyvDLIPKAVKGKVGELlkKKDERGKLDE---LVDQLELRHVldrnidqLSGGELQRVAIAAALARDADFYFFDE 165
|
170 180 190
....*....|....*....|....*....|....*
gi 559777052 178 PSmglSPLLVKEVFS---IIEKINKDqGITMLLVE 209
Cdd:cd03236 166 PS---SYLDIKQRLNaarLIRELAED-DNYVLVVE 196
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
152-239 |
2.58e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.31 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMAR---PKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITMLLVEQNANfALHAADygYIME-- 226
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRL-VDKGNTVVVIEHNLD-VIKTAD--YIIDlg 905
|
90
....*....|....*....
gi 559777052 227 ------SGKIVLDGTKHEL 239
Cdd:TIGR00630 906 peggdgGGTVVASGTPEEV 924
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
31-221 |
3.88e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 41.06 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKST----TL-KAISGLL---KTEDGEVTRGEITfmgERID-----NKSPeeIVRS-- 95
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSlindTLyPALARRLhlkKEQPGNHDRIEGL---EHIDkviviDQSP--IGRTpr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 96 -------GIF--------QVMEGRRI----------------VEDMTVIENLRLgaftrndnevekdiemvFDYFPRLKE 144
Cdd:cd03271 86 snpatytGVFdeirelfcEVCKGKRYnretlevrykgksiadVLDMTVEEALEF-----------------FENIPKIAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 145 R------TGLaGY---------LSGGEQQMLAIGRALMAR---PKMILLDEPSMGLSPLLVKEVFSIIEKInKDQGITML 206
Cdd:cd03271 149 KlqtlcdVGL-GYiklgqpattLSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFHDVKKLLEVLQRL-VDKGNTVV 226
|
250
....*....|....*...
gi 559777052 207 LVEQNanfaLH---AADY 221
Cdd:cd03271 227 VIEHN----LDvikCADW 240
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
31-72 |
5.18e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 41.03 E-value: 5.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 559777052 31 LRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDGEV 72
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
149-244 |
7.32e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 40.78 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 149 AGYLSGGEQQ--MLA--IGRALMArpkmIL--LDEPSMGLSP-----LLvkevfSIIEKInKDQGITMLLVEqnanfalH 217
Cdd:COG0178 483 AGTLSGGEAQriRLAtqIGSGLVG----VLyvLDEPSIGLHQrdndrLI-----ETLKRL-RDLGNTVIVVE-------H 545
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 559777052 218 ------AADY-----------GyimesGKIVLDGTKHELLNNED 244
Cdd:COG0178 546 dedtirAADYiidigpgagehG-----GEVVAQGTPEEILKNPD 584
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
152-228 |
9.77e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.58 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 152 LSGGEQQMLAIGRALMA---RPKMILLDEPSMGLSPLLVKEVFSIIEKINkDQGITMLLVEQNANFaLHAADygYIMESG 228
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNMHV-VKVAD--YVLELG 885
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
15-248 |
2.54e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 38.80 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 15 LSVNNIEVVYDEVILVLRGVSLEVPKGQIVTLLGANGAGKSTTLKAISGLLKTEDgevtrGEITFMGERIDNKSPEEIVR 94
Cdd:PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS-----GEILLDGKPVTAEQPEDYRK 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 95 --SGIFQvmegrriveDMTVIENLrLGaftrNDNEvEKDIEMVFDYFPRLK--ERTGLAGY------LSGGEQQMLAIGR 164
Cdd:PRK10522 398 lfSAVFT---------DFHLFDQL-LG----PEGK-PANPALVEKWLERLKmaHKLELEDGrisnlkLSKGQKKRLALLL 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 165 ALMARPKMILLDEPSMGLSPLLVKEVFSIIEKINKDQGITMLLVEQNANFALHaADYGYIMESGKIV-LDGTKHELLNNE 243
Cdd:PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQLSeLTGEERDAASRD 541
|
....*
gi 559777052 244 DVKEF 248
Cdd:PRK10522 542 AVART 546
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
40-119 |
2.81e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 37.35 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 559777052 40 KGQIVTLLGANGAGKSTTLKAISGLLKTEDGEVTRGEITFMGERIDNKSPEEIVRSGIFQVMEGRRIVEDMTVIENLRLG 119
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
|
|
| |
