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Conserved domains on  [gi|563233200|ref|WP_023659092|]
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MULTISPECIES: sel1 repeat family protein [Pseudomonas]

Protein Classification

SEL1-like repeat protein( domain architecture ID 1000170)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR super family cl34042
TPR repeat [General function prediction only];
47-105 4.47e-08

TPR repeat [General function prediction only];


The actual alignment was detected with superfamily member COG0790:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 48.77  E-value: 4.47e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 563233200  47 AGHLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790  122 ALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
47-105 4.47e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 48.77  E-value: 4.47e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 563233200  47 AGHLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790  122 ALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
47-105 4.47e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 48.77  E-value: 4.47e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 563233200  47 AGHLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790  122 ALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
TPR COG0790
TPR repeat [General function prediction only];
47-105 3.49e-06

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 43.76  E-value: 3.49e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 563233200  47 AGHLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790   86 ALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLL 144
TPR COG0790
TPR repeat [General function prediction only];
49-105 8.54e-06

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.61  E-value: 8.54e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 563233200  49 HLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790  160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRL 216
TPR COG0790
TPR repeat [General function prediction only];
46-105 9.64e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 39.53  E-value: 9.64e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 563233200  46 FAGHLLKQPARAGVVVAQSRLGQLMCRECGNARDRRIGHELLRQAARAGDRIAQRELGQI 105
Cdd:COG0790   49 AAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAEAQYNLGLM 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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