|
Name |
Accession |
Description |
Interval |
E-value |
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-338 |
0e+00 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 597.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:COG1135 1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:COG1135 161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 241 VQQVTEPVETQETLKHFLEETTSGRTIKLTFVGEAAESPLITQIIRKFDVEVNILQGKISQTQDGAYGSLFIHVDGYENE 320
Cdd:COG1135 241 LPTVLNDELPEELLARLREAAGGGRLVRLTFVGESADEPLLSELARRFGVDVNILSGGIEEIQGTPVGRLIVELEGDDAA 320
|
330
....*....|....*...
gi 564752943 321 VNDVVDFIKSRQVEAEVI 338
Cdd:COG1135 321 IDAALAYLREQGVVVEVL 338
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-341 |
5.99e-180 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 501.25 E-value: 5.99e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 241 VQQvTEPVETQETLKHFLEET---TSGRTIKLTFVGEAAESPLITQIIRKFDVEVNILQGKISQTQDGAYGSLFIHVDGY 317
Cdd:PRK11153 241 IQS-TLHLDLPEDYLARLQAEpttGSGPLLRLEFTGESVDAPLLSETARRFGVDFNILSGQIDYIGGVKFGSLLVELTGD 319
|
330 340
....*....|....*....|....
gi 564752943 318 ENEVNDVVDFIKSRQVEAEVITNV 341
Cdd:PRK11153 320 PGDIQAAIAYLQEHGVKVEVLGYV 343
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-233 |
4.32e-156 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 436.63 E-value: 4.32e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| ABC_MetN |
TIGR02314 |
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ... |
1-341 |
9.68e-114 |
|
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 333.77 E-value: 9.68e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 241 VQ---QVTEPVETQETLKHfLEETTSGRTIKLTFVGEAAESPLITQIIRKFDVEVNILQGKISQTQDGAYGSLFIHVDGY 317
Cdd:TIGR02314 241 IRstlHLSIPEDYQERLQA-TPFADSVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGT 319
|
330 340
....*....|....*....|....
gi 564752943 318 ENEVNDVVDFIKSRQVEAEVITNV 341
Cdd:TIGR02314 320 QQDTQAAIAYLQEHNVKVEVLGYV 343
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-247 |
8.25e-99 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 301.05 E-value: 8.25e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSK-HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRN 79
Cdd:COG1123 260 LLEVRNLSKRYPVRgKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 ARQEISMIFQH----FNLLWsrTVRDNIAFPLEIAGV-SKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIAR 153
Cdd:COG1123 340 LRRRVQMVFQDpyssLNPRM--TVGDIIAEPLRLHGLlSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
250
....*....|....
gi 564752943 234 EEMTKRFVQQVTEP 247
Cdd:COG1123 498 HPYTRALLAAVPSL 511
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-244 |
1.15e-95 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 283.81 E-value: 1.15e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEiKGKKLRNA 80
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTD-SKKDINKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAF-PLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLaPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:COG1126 156 KVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRA 234
|
....*
gi 564752943 240 FVQQV 244
Cdd:COG1126 235 FLSKV 239
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-222 |
5.55e-95 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 281.55 E-value: 5.55e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:COG1136 4 LLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 R-QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG1136 84 RrRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRkICHRVAVMENGKVVEE 222
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAA-RADRVIRLRDGRIVSD 225
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-223 |
4.34e-93 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 276.55 E-value: 4.34e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:COG2884 1 MIRFENVSKRYP---GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:COG2884 78 RRRIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINeRLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEIN-RRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-225 |
3.36e-91 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 273.12 E-value: 3.36e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklrnA 80
Cdd:COG1116 7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTG--------P 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLL-WsRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG1116 79 GPDRGVVFQEPALLpW-LTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMH-VIRkICHRVAVMEN--GKVVEEGDV 225
Cdd:COG1116 158 EVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDeAVF-LADRVVVLSArpGRIVEEIDV 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-219 |
1.65e-88 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 264.74 E-value: 1.65e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR 81
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 -QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRkICHRVAVMENGKV 219
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-241 |
8.69e-88 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 263.76 E-value: 8.69e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:COG1127 5 MIEVRNLTKSF----GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPL-EIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENVAFPLrEHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVlNVFLKPQEEMTKR 239
Cdd:COG1127 161 EILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTP-EELLASDDPWVRQ 239
|
..
gi 564752943 240 FV 241
Cdd:COG1127 240 FL 241
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-244 |
3.84e-87 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 267.35 E-value: 3.84e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIY--------------------RSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSG 60
Cdd:COG4175 3 KIEVRNLYKIFgkrperalklldqgkskdeiLEKTGQTVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 61 TVEVAGRTISEIKGKKLRNARQE-ISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPS 139
Cdd:COG4175 83 EVLIDGEDITKLSKKELRELRRKkMSMVFQHFALLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWEDSYPD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDP------QttDSILgllsDINERLGLTIVLITHEMHVIRKICHRVAV 213
Cdd:COG4175 163 ELSGGMQQRVGLARALATDPDILLMDEAFSALDPlirremQ--DELL----ELQAKLKKTIVFITHDLDEALRLGDRIAI 236
|
250 260 270
....*....|....*....|....*....|.
gi 564752943 214 MENGKVVEEGDVLNVFLKPQEEMTKRFVQQV 244
Cdd:COG4175 237 MKDGRIVQIGTPEEILTNPANDYVADFVEDV 267
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-233 |
1.09e-86 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 263.84 E-value: 1.09e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQP---TSGTVEVAGRTISEIKGKKL 77
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNAR-QEISMIFQH----FNLLWsrTVRDNIAFPLEI-AGVSKAKRLKRVAELIKLVGLEGKE---NAYPSQLSGGQKQR 148
Cdd:COG0444 81 RKIRgREIQMIFQDpmtsLNPVM--TVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPErrlDRYPHELSGGMRQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 149 VGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNV 228
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEEL 238
|
....*
gi 564752943 229 FLKPQ 233
Cdd:COG0444 239 FENPR 243
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-223 |
1.56e-86 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 260.13 E-value: 1.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH----FNLLWsrTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKE---NAYPSQLSGGQKQRVGIAR 153
Cdd:cd03257 81 RKEIQMVFQDpmssLNPRM--TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEevlNRYPHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
14-244 |
4.76e-85 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 257.96 E-value: 4.76e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR-QEISMIFQHFN 92
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRrKKISMVFQSFA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 93 LLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:cd03294 113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 173 PQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQQV 244
Cdd:cd03294 193 PLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGV 264
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-225 |
1.95e-84 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 254.32 E-value: 1.95e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklrnAR 81
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--------PG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLL-WsRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03293 73 PDRGYVFQQDALLpW-LTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMH-VIRkICHRVAVMEN--GKVVEEGDV 225
Cdd:cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDeAVF-LADRVVVLSArpGRIVAEVEV 218
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-242 |
5.57e-84 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 254.34 E-value: 5.57e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNA 80
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGR---PVTRRRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH----FNLLWsrTVRDNIAFPLEIAGVSKAKRlkRVAELIKLVGLEGKE-NAYPSQLSGGQKQRVGIARAL 155
Cdd:COG1124 78 RRRVQMVFQDpyasLHPRH--TVDRILAEPLRIHGLPDREE--RIAELLEQVGLPPSFlDRYPHQLSGGQRQRVAIARAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEE 235
Cdd:COG1124 154 ILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHP 233
|
....*..
gi 564752943 236 MTKRFVQ 242
Cdd:COG1124 234 YTRELLA 240
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-229 |
2.10e-82 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 249.56 E-value: 2.10e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNAR 81
Cdd:COG1122 1 IELENLSFSY---PGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITK---KNLRELR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:COG1122 75 RKVGLVFQNpDDQLFAPTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:COG1122 155 VLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVF 222
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-241 |
5.89e-80 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 247.70 E-value: 5.89e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlRNa 80
Cdd:COG3842 5 ALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK-RN- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:COG3842 79 ---VGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITH------EMhvirkiCHRVAVMENGKVVEEGDVLNVFLKPQE 234
Cdd:COG3842 156 VLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHdqeealAL------ADRIAVMNDGRIEQVGTPEEIYERPAT 229
|
....*..
gi 564752943 235 EMTKRFV 241
Cdd:COG3842 230 RFVADFI 236
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
10-233 |
3.61e-79 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 244.64 E-value: 3.61e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 10 IYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQEISMIFQ 89
Cdd:COG4608 23 LFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPLRRRMQMVFQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 H-FNLLWSR-TVRDNIAFPLEIAGV-SKAKRLKRVAELIKLVGLEgKE--NAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:COG4608 103 DpYASLNPRmTVGDIIAEPLRIHGLaSKAERRERVAELLELVGLR-PEhaDRYPHEFSGGQRQRIGIARALALNPKLIVC 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 165 DEATSALD----PQttdsILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:COG4608 182 DEPVSALDvsiqAQ----VLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELYARPL 250
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-220 |
6.04e-78 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 238.80 E-value: 6.04e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:COG3638 2 MLELRNLSKRYP---GGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNI-------------AFPLeiagVSKAKRLkRVAELIKLVGLEGKENAYPSQLSGGQKQ 147
Cdd:COG3638 79 RRRIGMIFQQFNLVPRLSVLTNVlagrlgrtstwrsLLGL----FPPEDRE-RALEALERVGLADKAYQRADQLSGGQQQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:COG3638 154 RVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-223 |
2.91e-77 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 235.88 E-value: 2.91e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkKLRNARQE 83
Cdd:cd03259 3 LKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT-----GVPPERRN 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-223 |
4.10e-77 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 236.24 E-value: 4.10e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR 81
Cdd:cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPL-EIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLrEHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-225 |
8.15e-77 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 235.34 E-value: 8.15e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIseikGKKLRNAR 81
Cdd:COG1131 1 IEVRGLTKRY----GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDV----ARDPAEVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:COG1131 73 RRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:COG1131 153 LILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTP 215
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-219 |
7.61e-76 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 232.42 E-value: 7.61e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeIKGKKLRNAR 81
Cdd:cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT-DDKKNINELR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAF-PLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03262 76 QKVGMVFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-218 |
3.63e-70 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 217.72 E-value: 3.63e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNARQE 83
Cdd:cd03225 2 LKNLSFSY--PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK---DLTKLSLKELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNL-LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVL 162
Cdd:cd03225 77 VGLVFQNPDDqFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 163 LCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-218 |
6.45e-70 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 215.90 E-value: 6.45e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIkGKKLRNAR 81
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL-EDELPPLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLeiagvskakrlkrvaeliklvglegkenaypsqlSGGQKQRVGIARALANNPKV 161
Cdd:cd03229 76 RRIGMVFQDFALFPHLTVLENIALGL----------------------------------SGGQQQRVALARALAMDPDV 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-232 |
7.72e-70 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 221.49 E-value: 7.72e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlRNa 80
Cdd:COG3839 3 SLELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD-RN- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:COG3839 77 ---IAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHE----MhvirKICHRVAVMENGKVVEEGDVLNVFLKP 232
Cdd:COG3839 154 VFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaM----TLADRIAVMNDGRIQQVGTPEELYDRP 225
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-223 |
8.12e-70 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 217.82 E-value: 8.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR 81
Cdd:cd03256 1 IEVENLSKTYP---NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPL--------EIAG-VSKAKRLkRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIA 152
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRlgrrstwrSLFGlFPKEEKQ-RALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-219 |
8.84e-70 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 216.89 E-value: 8.84e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR 81
Cdd:cd03292 1 IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
10-239 |
1.16e-69 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 226.49 E-value: 1.16e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 10 IYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPTSGTVEVAGRTISEIKGKKLRNARQEISMIFQ 89
Cdd:COG4172 291 LFRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGQDLDGLSRRALRPLRRRMQVVFQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 H-FNLLWSR-TVRDNIAFPLEI--AGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:COG4172 370 DpFGSLSPRmTVGQIIAEGLRVhgPGLSAAERRARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVL 449
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:COG4172 450 DEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRA 524
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-234 |
1.42e-69 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 225.55 E-value: 1.42e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPT---SGTVEVAGRtisEIKGKKL 77
Cdd:COG1123 4 LLEVRDLSVRYP--GGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGR---DLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNARQEISMIFQHF-NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:COG1123 79 ALRGRRIGMVFQDPmTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQE 234
Cdd:COG1123 159 LDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQA 236
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-222 |
4.55e-69 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 215.76 E-value: 4.55e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIS---EIKGKKL 77
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFaldEDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNARqeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKrlKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:COG4181 88 RARH--VGFVFQSFQLLPTLTALENVMLPLELAGRRDAR--ARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFAT 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEE 222
Cdd:COG4181 164 EPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVED 227
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-245 |
1.07e-68 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 214.96 E-value: 1.07e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgKKLRNA 80
Cdd:PRK09493 1 MIEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK-VDERLI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAF-PLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE 234
|
....*.
gi 564752943 240 FVQQVT 245
Cdd:PRK09493 235 FLQHVS 240
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-242 |
4.56e-68 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 213.34 E-value: 4.56e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIS---EIKGKKLR 78
Cdd:COG4161 3 IQLKNINCFY----GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqKPSEKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQHFNLLWSRTVRDN-IAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:COG4161 79 LLRQKVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDvLNVFLKPQeemT 237
Cdd:COG4161 159 EPQVLLFDEPTAALDPEITAQVVEIIRELSQ-TGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQ---T 233
|
....*
gi 564752943 238 KRFVQ 242
Cdd:COG4161 234 EAFAH 238
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-234 |
6.92e-68 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 214.24 E-value: 6.92e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHG-DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:TIGR04521 1 IKLKNVSYIYQPGTPfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQhF--NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEgkENAY---PSQLSGGQKQRVGIARAL 155
Cdd:TIGR04521 81 RKKVGLVFQ-FpeHQLFEETVYKDIAFGPKNLGLSEEEAEERVKEALELVGLD--EEYLersPFELSGGQMRRVAIAGVL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQE 234
Cdd:TIGR04521 158 AMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVDE 236
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-243 |
7.04e-68 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 212.93 E-value: 7.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:cd03295 1 IEFENVTKRYGGGK---KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENA--YPSQLSGGQKQRVGIARALANNP 159
Cdd:cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFAdrYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
....
gi 564752943 240 FVQQ 243
Cdd:cd03295 235 FVGA 238
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-242 |
1.43e-67 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 212.18 E-value: 1.43e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI---SEIKGKKLR 78
Cdd:PRK11124 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQHFNLLWSRTVRDN-IAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVlNVFLKPQeemT 237
Cdd:PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA-SCFTQPQ---T 233
|
....*
gi 564752943 238 KRFVQ 242
Cdd:PRK11124 234 EAFKN 238
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-241 |
9.45e-67 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 209.79 E-value: 9.45e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrnaR 81
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK----R 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03300 73 P-VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFV 241
Cdd:cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-233 |
3.11e-65 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 209.62 E-value: 3.11e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKiyrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNar 81
Cdd:COG1118 3 IEVRNISK----RFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPRERR-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:COG1118 77 --VGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:COG1118 155 LLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPA 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-239 |
7.63e-65 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 213.78 E-value: 7.63e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKS----SLIRLLNGLEQPTSGTVEVAGRTISEIKGKK 76
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRNAR-QEISMIFQH----FNLLWsrTVRDNIAFPLEI-AGVSKAKRLKRVAELIKLVGL---EGKENAYPSQLSGGQKQ 147
Cdd:COG4172 86 LRRIRgNRIAMIFQEpmtsLNPLH--TIGKQIAEVLRLhRGLSGAAARARALELLERVGIpdpERRLDAYPHQLSGGQRQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLN 227
Cdd:COG4172 164 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAE 243
|
250
....*....|..
gi 564752943 228 VFLKPQEEMTKR 239
Cdd:COG4172 244 LFAAPQHPYTRK 255
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-223 |
8.08e-65 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 206.13 E-value: 8.08e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAG-RTISEikgKKLRNA 80
Cdd:TIGR04520 1 IEVENVSFSYPE--SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGlDTLDE---ENLWEI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:TIGR04520 76 RKKVGMVFQNpDNQFVGATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:TIGR04520 156 DIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEG 218
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-225 |
1.34e-64 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 203.95 E-value: 1.34e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLE-----QPTSGTVEVAGRTISEIKGKK 76
Cdd:cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LrNARQEISMIFQHFNLLWSrTVRDNIAFPLEIAGVSKAKRLK-RVAELIKLVGL--EGKENAYPSQLSGGQKQRVGIAR 153
Cdd:cd03260 77 L-ELRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIKLKEELDeRVEEALRKAALwdEVKDRLHALGLSGGQQQRLCLAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-223 |
8.85e-64 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 202.53 E-value: 8.85e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:TIGR02315 1 MLEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNI--------AFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIA 152
Cdd:TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVlhgrlgykPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
16-240 |
5.47e-63 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 200.80 E-value: 5.47e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKK----------LRNARQEIS 85
Cdd:COG4598 19 GDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDgelvpadrrqLQRIRTRLG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 86 MIFQHFNLlWS-RTVRDN-IAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:COG4598 99 MVFQSFNL-WShMTVLENvIEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIARALAMEPEVML 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:COG4598 178 FDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNPKSERLRQF 253
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-243 |
7.45e-62 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 197.67 E-value: 7.45e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskHGDVnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEV------AGRTISEIKG 74
Cdd:PRK11264 3 AIEVKNLVKKF---HGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidTARSLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 75 KkLRNARQEISMIFQHFNLLWSRTVRDN-IAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIAR 153
Cdd:PRK11264 79 L-IRQLRQHVGFVFQNFNLFPHRTVLENiIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236
|
250
....*....|
gi 564752943 234 EEMTKRFVQQ 243
Cdd:PRK11264 237 QPRTRQFLEK 246
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-225 |
1.81e-61 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 197.22 E-value: 1.81e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRS-----KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGK 75
Cdd:PRK10419 3 LLNVSGLSHHYAHgglsgKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 76 KLRNARQEISMIFQH----FNLlwSRTVRDNIAFPLE-IAGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRV 149
Cdd:PRK10419 83 QRKAFRRDIQMVFQDsisaVNP--RKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGGQLQRV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 150 GIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-224 |
1.25e-60 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 194.87 E-value: 1.25e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikGKKL-RN 79
Cdd:COG0411 4 LLEVRGLTKRF----GGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT---GLPPhRI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 ARQEISMIFQHFNLLWSRTVRDNIA----------FPLEIAGVSKAKR-----LKRVAELIKLVGLEGKENAYPSQLSGG 144
Cdd:COG0411 77 ARLGIARTFQNPRLFPELTVLENVLvaaharlgrgLLAALLRLPRARReereaRERAEELLERVGLADRADEPAGNLSYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 145 QKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGT 236
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-241 |
1.42e-58 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 189.09 E-value: 1.42e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikGKKLRnaR 81
Cdd:cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT---DVPVQ--E 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEI----AGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVkprsERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMT 237
Cdd:cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
....
gi 564752943 238 KRFV 241
Cdd:cd03296 234 YSFL 237
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-231 |
1.59e-57 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 185.40 E-value: 1.59e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSkhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNARQE 83
Cdd:cd03263 3 IRNLTKTYKK--GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR----TDRKAARQS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 164 CDEATSALDPQTTDSILGLLSDinERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLnvFLK 231
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILE--VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ--ELK 220
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-224 |
1.66e-57 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 186.10 E-value: 1.66e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRN-ARQ 82
Cdd:cd03219 3 VRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE---DITGLPPHEiARL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQHFNLLWSRTVRDNI----------AFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIA 152
Cdd:cd03219 76 GIGRTFQIPRLFPELTVLENVmvaaqartgsGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-225 |
1.86e-57 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 185.73 E-value: 1.86e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdVNAvqdvTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkKLRNA 80
Cdd:COG3840 1 MLRLDDLTYRYGDFP--LRF----DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLT-----ALPPA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFpleiaGVSKAKRL-----KRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARAL 155
Cdd:COG3840 70 ERPVSMLFQENNLFPHLTVAQNIGL-----GLRPGLKLtaeqrAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:COG3840 145 VRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPT 214
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-229 |
7.14e-57 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 184.91 E-value: 7.14e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGrtiseikgKKLRNA 80
Cdd:COG1121 6 AIELENLTVSY----GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG--------KPPRRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSR--TVRDNIAFPLeIAGVSKAKRLKR-----VAELIKLVGLEGKENAYPSQLSGGQKQRVGIAR 153
Cdd:COG1121 74 RRRIGYVPQRAEVDWDFpiTVRDVVLMGR-YGRRGLFRRPSRadreaVDEALERVGLEDLADRPIGELSGGQQQRVLLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMeNGKVVEEGDVLNVF 229
Cdd:COG1121 153 ALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVL 226
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-199 |
7.44e-57 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 185.45 E-value: 7.44e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGkklrna 80
Cdd:COG4525 3 MLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGA------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqEISMIFQHFNLL-WsRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG4525 77 --DRGVVFQKDALLpW-LNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADP 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITH 199
Cdd:COG4525 154 RFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITH 193
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-223 |
7.95e-57 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 183.61 E-value: 7.95e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlRNar 81
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-RD-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03301 74 --IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-219 |
3.98e-56 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 180.29 E-value: 3.98e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIseikGKKLRNAR 81
Cdd:cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI----KKEPEEVK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIafpleiagvskakrlkrvaeliklvglegkenaypsQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03230 73 RRIGYLPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPEL 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:cd03230 117 LILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-223 |
8.90e-56 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 182.91 E-value: 8.90e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNAR 81
Cdd:PRK13635 6 IRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE---ETVWDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK13635 81 RQVGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-244 |
1.94e-55 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 181.40 E-value: 1.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnA 80
Cdd:COG1120 1 MLEAENLSVGYGGRP----VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRREL--A 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQeISMIFQHFNLLWSRTVRDNIA---FP-LEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:COG1120 75 RR-IAYVPQEPPAPFGLTVRELVAlgrYPhLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEM-HVIRkICHRVAVMENGKVVEEGDvlnvflkPQEE 235
Cdd:COG1120 154 QEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLnLAAR-YADRLVLLKDGRIVAQGP-------PEEV 225
|
....*....
gi 564752943 236 MTKRFVQQV 244
Cdd:COG1120 226 LTPELLEEV 234
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-222 |
2.16e-55 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 180.07 E-value: 2.16e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:PRK10908 1 MIRFEHVSKAYL---GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINeRLGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-241 |
5.88e-55 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 180.23 E-value: 5.88e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-----EQPTSGTVEVAGRTISEiKGKK 76
Cdd:COG1117 12 IEVRNLNVYYGDKQ----ALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndlipGARVEGEILLDGEDIYD-PDVD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRNARQEISMIFQHFNLLwSRTVRDNIAFPLEIAGVSKAKRL-KRVAELIKLVGL--EGKE--NAYPSQLSGGQKQRVGI 151
Cdd:COG1117 87 VVELRRRVGMVFQKPNPF-PKSIYDNVAYGLRLHGIKSKSELdEIVEESLRKAALwdEVKDrlKKSALGLSGGQQQRLCI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 152 ARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLK 231
Cdd:COG1117 166 ARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTN 243
|
250
....*....|
gi 564752943 232 PQEEMTKRFV 241
Cdd:COG1117 244 PKDKRTEDYI 253
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-219 |
6.11e-55 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 178.47 E-value: 6.11e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSKHGdvnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnarQE 83
Cdd:COG4619 3 LEGLSFRVGGKPI----LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWR---RQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHfNLLWSRTVRDNIAFPLEIAGvsKAKRLKRVAELIKLVGLEGKENAYP-SQLSGGQKQRVGIARALANNPKVL 162
Cdd:COG4619 76 VAYVPQE-PALWGGTVRDNLPFPFQLRE--RKFDRERALELLERLGLPPDILDKPvERLSGGERQRLALIRALLLQPDVL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 163 LCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:COG4619 153 LLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-223 |
1.01e-54 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 190.05 E-value: 1.01e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:COG2274 474 IELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQID---PASLR 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFpleiaGVSKAkRLKRVAELIKLVGLEGKENAYP-----------SQLSGGQKQRVG 150
Cdd:COG2274 549 RQIGVVLQD-VFLFSGTIRENITL-----GDPDA-TDEEIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDG 691
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
5-242 |
1.23e-54 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 179.65 E-value: 1.23e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 5 QNVSKIYRSKHG-----DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseIKGKKL-- 77
Cdd:COG4167 8 RNLSKTFKYRTGlfrrqQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEIL--------INGHKLey 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 ---RNARQEISMIFQHFNLlwSRTVRDNIA----FPLEIA-GVSKAKRLKRVAELIKLVGLEGkENA--YPSQLSGGQKQ 147
Cdd:COG4167 80 gdyKYRCKHIRMIFQDPNT--SLNPRLNIGqileEPLRLNtDLTAEEREERIFATLRLVGLLP-EHAnfYPHMLSSGQKQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLN 227
Cdd:COG4167 157 RVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAE 236
|
250
....*....|....*
gi 564752943 228 VFLKPQEEMTKRFVQ 242
Cdd:COG4167 237 VFANPQHEVTKRLIE 251
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-244 |
5.37e-54 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 181.57 E-value: 5.37e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrna 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK11607 91 -RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEF 249
|
....
gi 564752943 241 VQQV 244
Cdd:PRK11607 250 IGSV 253
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
14-223 |
3.90e-53 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 174.48 E-value: 3.90e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNARQEISMIFQHFNL 93
Cdd:cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV----REPREVRRRIGIVFQDLSV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Cdd:cd03265 85 DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564752943 174 QTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03265 165 QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-220 |
5.59e-53 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 173.49 E-value: 5.59e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVagrtiseiKGKKLRNARQE 83
Cdd:cd03235 2 VEDLTVSY----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV--------FGKPLEKERKR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSR--TVRDNIAFPLE-----IAGVSKAKRlKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:cd03235 70 IGYVPQRRSIDRDFpiSVRDVVLMGLYghkglFRRLSKADK-AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMeNGKVV 220
Cdd:cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVV 210
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-218 |
4.67e-52 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 169.87 E-value: 4.67e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:cd03228 1 IEFKNVSFSYPGR--PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFnLLWSRTVRDNIafpleiagvskakrlkrvaeliklvglegkenaypsqLSGGQKQRVGIARALANNPKV 161
Cdd:cd03228 78 --IAYVPQDP-FLFSGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDIneRLGLTIVLITHEMHVIRKiCHRVAVMENGK 218
Cdd:cd03228 118 LILDEATSALDPETEALILEALRAL--AKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-246 |
1.83e-51 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 172.13 E-value: 1.83e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIS-EIKGKKLRNARQEISMIFQhF--NLLWS 96
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITaGKKNKKLKPLRKKVGIVFQ-FpeHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 97 RTVRDNIAF-PLEIaGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQ 174
Cdd:PRK13634 101 ETVEKDICFgPMNF-GVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 175 TTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQE--------EMTKRFVQQVTE 246
Cdd:PRK13634 180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDEleaigldlPETVKFKRALEE 259
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
6-222 |
3.02e-51 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 170.00 E-value: 3.02e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 6 NVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGK---KLRNarQ 82
Cdd:PRK11629 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAakaELRN--Q 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVL 162
Cdd:PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 163 LCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKIcHRVAVMENGKVVEE 222
Cdd:PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-229 |
3.17e-51 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 171.38 E-value: 3.17e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHG-DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEiKGKKLRNA 80
Cdd:PRK13637 3 IKIENLTHIYMEGTPfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLSDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNL-LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL--EGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:PRK13637 82 RKKVGLVFQYPEYqLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
20-244 |
5.74e-51 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 174.07 E-value: 5.74e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR-QEISMIFQHFNLLWSRT 98
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRrKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 99 VRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQQV 244
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-242 |
8.82e-51 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 169.38 E-value: 8.82e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 12 RSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKG----------KKLRNAR 81
Cdd:PRK10619 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDkdgqlkvadkNQLRLLR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNI-AFPLEIAGVSKAKRLKRVAELIKLVGLEGKENA-YPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK10619 92 TRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGkYPVHLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
|
...
gi 564752943 240 FVQ 242
Cdd:PRK10619 251 FLK 253
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-241 |
1.44e-50 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 168.28 E-value: 1.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlRNar 81
Cdd:cd03299 1 LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK-RD-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03299 73 --ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFV 241
Cdd:cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFL 230
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-169 |
8.72e-50 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 163.20 E-value: 8.72e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnaRQEISMIFQHFNLLWSRTVR 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSL---RKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 101 DNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKEN----AYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:pfam00005 78 ENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADrpvgERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
13-247 |
1.32e-49 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 168.73 E-value: 1.32e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 13 SKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQEISMIFQhfN 92
Cdd:PRK15079 29 QPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQ--D 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 93 LLWS----RTVRDNIAFPLEI--AGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARALANNPKVLLCD 165
Cdd:PRK15079 107 PLASlnprMTIGEIIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 166 EATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQQVT 245
Cdd:PRK15079 187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266
|
..
gi 564752943 246 EP 247
Cdd:PRK15079 267 IP 268
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-223 |
2.47e-49 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 164.29 E-value: 2.47e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvnAVQDVTLTIKKGeIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNAR 81
Cdd:cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL----KQPQKLR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
7-238 |
6.85e-49 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 166.68 E-value: 6.85e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 7 VSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQEISM 86
Cdd:PRK11308 17 VKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 87 IFQH-FNLLWSR-TVRDNIAFPLEI-AGVSKAKRLKRVAELIKLVGLEgKENA--YPSQLSGGQKQRVGIARALANNPKV 161
Cdd:PRK11308 97 VFQNpYGSLNPRkKVGQILEEPLLInTSLSAAERREKALAMMAKVGLR-PEHYdrYPHMFSGGQRQRIAIARALMLDPDV 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTK 238
Cdd:PRK11308 176 VVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-223 |
7.05e-49 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 172.27 E-value: 7.05e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:COG1132 340 IEFENVSFSYP---GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQ- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFnLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIK--------LVGLEGkenaypSQLSGGQKQRVG 150
Cdd:COG1132 416 --IGVVPQDT-FLFSGTIRENIRYGRPDATdeeVEEAAKAAQAHEFIEalpdgydtVVGERG------VNLSGGQRQRIA 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:COG1132 487 IARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQG 556
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-225 |
1.41e-48 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 170.21 E-value: 1.41e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIsEIKGKklRNA 80
Cdd:COG3845 5 ALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV-RIRSP--RDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQE-ISMIFQHFNLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:COG3845 78 IALgIGMVHQHFMLVPNLTVAENIVLGLEPTKggrLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALY 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLsdinERL---GLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:COG3845 158 RGARILILDEPTAVLTPQEADELFEIL----RRLaaeGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDT 225
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-220 |
2.08e-48 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 172.22 E-value: 2.08e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA 80
Cdd:PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQE-ISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK10535 84 RREhFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKiCHRVAVMENGKVV 220
Cdd:PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
23-223 |
6.69e-48 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 160.54 E-value: 6.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIK---KGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEI-KGKKLRNARQEISMIFQHFNLLWSRT 98
Cdd:cd03297 12 DFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSrKKINLPPQQRKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 99 VRDNIAFPLEiaGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:cd03297 92 VRENLAFGLK--RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03297 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-225 |
7.63e-48 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 167.89 E-value: 7.63e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNARQE 83
Cdd:COG1129 7 MRGISKSF----GGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGE---PVRFRSPRDAQAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 -ISMIFQHFNLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG1129 80 gIAIIHQELNLVPNLSVAENIFLGREPRRgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:COG1129 160 RVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPV 224
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-223 |
8.42e-48 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 159.14 E-value: 8.42e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnARQe 83
Cdd:cd03214 2 VENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKEL--ARK- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ismifqhfnllwsrtvrdnIAFpleiagvskakrlkrVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:cd03214 75 -------------------IAY---------------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILL 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
2.37e-47 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 160.93 E-value: 2.37e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSkhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNA 80
Cdd:PRK13632 7 MIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK---ENLKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK13632 82 RKKIGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEIL 230
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-246 |
2.74e-47 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 161.02 E-value: 2.74e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVN--AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkKLR 78
Cdd:PRK13633 4 MIKCKNVSYKYESNEESTEklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE--NLW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL-EGKENAyPSQLSGGQKQRVGIARALA 156
Cdd:PRK13633 82 DIRNKAGMVFQNpDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMyEYRRHA-PHLLSGGQKQRVAIAGILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGDVLNVFlkPQEEM 236
Cdd:PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF--KEVEM 237
|
250
....*....|...
gi 564752943 237 TKRF---VQQVTE 246
Cdd:PRK13633 238 MKKIgldVPQVTE 250
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-291 |
6.84e-47 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 161.41 E-value: 6.84e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRS-----------------KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVE 63
Cdd:COG4586 1 IIEVENLSKTYRVyekepglkgalkglfrrEYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 64 VAGRTISEikgKKLRNARQeISMIF-QHFNLLWSRTVRDNiaFPL--EIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQ 140
Cdd:COG4586 81 VLGYVPFK---RRKEFARR-IGVVFgQRSQLWWDLPAIDS--FRLlkAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:COG4586 155 LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 221 EEGDVLNvfLKPQEEMTKRFVQQVTEPVETQETLKHFLEETTSGRTIKLTFVGEAAESPLITQIIRKFDVE 291
Cdd:COG4586 235 YDGSLEE--LKERFGPYKTIVLELAEPVPPLELPRGGEVIEREGNRVRLEVDPRESLAEVLARLLARYPVR 303
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-229 |
7.87e-47 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 159.86 E-value: 7.87e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 17 DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgKKLRNARQEISMIFQHF-NLLW 95
Cdd:PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK-KSLLEVRKTVGIVFQNPdDQLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAF-PLEIaGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQ 174
Cdd:PRK13639 93 APTVEEDVAFgPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 175 TTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13639 172 GASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-241 |
1.29e-46 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 162.04 E-value: 1.29e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrnaR 81
Cdd:PRK09452 15 VELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN----R 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:PRK09452 87 H-VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFV 241
Cdd:PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-224 |
1.44e-46 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 165.70 E-value: 1.44e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnaR 81
Cdd:COG4988 337 IELEDVSFSY---PGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW---R 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFpleiaGVSKAKRlKRVAELIKLVGLEGKENAYP-----------SQLSGGQKQRVG 150
Cdd:COG4988 411 RQIAWVPQN-PYLFAGTIRENLRL-----GRPDASD-EELEAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRkICHRVAVMENGKVVEEGD 224
Cdd:COG4988 484 LARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLA-QADRILVLDDGRIVEQGT 554
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-201 |
1.72e-46 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 158.32 E-value: 1.72e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKhgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkklrNA 80
Cdd:PRK11248 1 MLQISHLYADYGGK----PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE--------GP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK11248 69 GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQ 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEM 201
Cdd:PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-236 |
4.45e-46 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 156.47 E-value: 4.45e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnarqeisMIFQHFNLLWSRTVR 100
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--------VVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFPLE--IAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:TIGR01184 73 ENIALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNV-FLKPQEEM 236
Cdd:TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRDRL 211
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
4-218 |
5.28e-46 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 153.55 E-value: 5.28e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKiyrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNarqE 83
Cdd:cd00267 2 IENLSF----RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR---R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQhfnllwsrtvrdniafpleiagvskakrlkrvaeliklvglegkenaypsqLSGGQKQRVGIARALANNPKVLL 163
Cdd:cd00267 75 IGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:cd00267 104 LDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-241 |
1.16e-45 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 159.09 E-value: 1.16e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLWSRTVRDNIAFPLEIagVSKAKRL------KRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARAL 155
Cdd:PRK10851 76 --VGFVFQHYALFRHMTVFDNIAFGLTV--LPRRERPnaaaikAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGdvlnvflKPQE- 234
Cdd:PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG-------TPDQv 224
|
....*....
gi 564752943 235 --EMTKRFV 241
Cdd:PRK10851 225 wrEPATRFV 233
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
23-229 |
1.51e-45 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 158.73 E-value: 1.51e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGKKLRNARQEISMIFQHFNLLWSRTVRD 101
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLqDSARGIFLPPHRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 102 NIAFpleiaGVSKAKRLKR---VAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:COG4148 97 NLLY-----GRKRAPRAERrisFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:COG4148 172 ILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVL 222
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-219 |
2.95e-45 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 155.66 E-value: 2.95e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNA 80
Cdd:PRK13650 4 IIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE---ENVWDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK13650 80 RHKIGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIrKICHRVAVMENGKV 219
Cdd:PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQV 218
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-291 |
6.34e-45 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 155.27 E-value: 6.34e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkklRNA 80
Cdd:COG4152 1 MLELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD-------PED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEI-----------SMifqhfnllwsrTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRV 149
Cdd:COG4152 70 RRRIgylpeerglypKM-----------KVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 150 GIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVf 229
Cdd:COG4152 139 QLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI- 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 230 lkpQEEMTKRFVQQVTE-PVETQETLKHFLEETTSGRTIKLTFVGEAAESPLITQIIRKFDVE 291
Cdd:COG4152 217 ---RRQFGRNTLRLEADgDAGWLRALPGVTVVEEDGDGAELKLEDGADAQELLRALLARGPVR 276
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
4-240 |
2.63e-44 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 155.26 E-value: 2.63e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklRNARQ- 82
Cdd:PRK11432 9 LKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH------RSIQQr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVL 162
Cdd:PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 163 LCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-244 |
3.66e-44 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 160.02 E-value: 3.66e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 17 DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQEISMIFQ--HFNLL 94
Cdd:PRK10261 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQdpYASLD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSRTVRDNIAFPLEIAGVSKAKRL-KRVAELIKLVGLEgKENA--YPSQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Cdd:PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAaARVAWLLERVGLL-PEHAwrYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 172 DPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQQV 244
Cdd:PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAV 567
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-220 |
4.76e-44 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 148.73 E-value: 4.76e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtiseikgkklrnarqe 83
Cdd:cd03216 3 LRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK---------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ismifqhfnllwsrtvrdniafPLEIAGVSKAKRLKrvaelIKLVglegkenaypSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:cd03216 63 ----------------------EVSFASPRDARRAG-----IAMV----------YQLSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-223 |
2.25e-43 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 148.58 E-value: 2.25e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklrNAR 81
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------AAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03269 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-223 |
5.05e-43 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 147.90 E-value: 5.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNA 80
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV----KEPAEA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-267 |
6.36e-43 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 150.34 E-value: 6.36e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkKLRNAR 81
Cdd:PRK13537 8 IDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS----RARHAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGdvlnvflKPQEEMTKRFV 241
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG-------APHALIESEIG 231
|
250 260 270
....*....|....*....|....*....|..
gi 564752943 242 QQVTE-----PVETQETLKHFLEET-TSGRTI 267
Cdd:PRK13537 232 CDVIEiygpdPVALRDELAPLAERTeISGETL 263
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-229 |
1.07e-42 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 149.12 E-value: 1.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHG-DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGKKLRN 79
Cdd:PRK13649 3 INLQNVSYTYQAGTPfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItSTSKNKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 ARQEISMIFQhF--NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:PRK13649 83 IRKKVGLVFQ-FpeSQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
10-223 |
1.31e-42 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 147.48 E-value: 1.31e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 10 IYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNarqeISMIF- 88
Cdd:cd03267 26 LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR----IGVVFg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 89 QHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:cd03267 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 169 SALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
23-223 |
1.53e-42 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 146.48 E-value: 1.53e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVevagrTISEIKGKKLRNARQEISMIFQHFNLLWSRTVRDN 102
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-----LINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 103 IAFpleiaGVSKAKRL-----KRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTD 177
Cdd:cd03298 91 VGL-----GLSPGLKLtaedrQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564752943 178 SILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
15-224 |
1.76e-42 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 146.81 E-value: 1.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnARQEISMIFQHFNLL 94
Cdd:cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER--ARAGIGYVPEGRRIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSRTVRDNI---AFPLEIAGVskAKRLKRVAELIKLvgLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Cdd:cd03224 88 PELTVEENLllgAYARRRAKR--KARLERVYELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564752943 172 DPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:cd03224 164 APKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
4.52e-42 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 147.26 E-value: 4.52e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNA 80
Cdd:PRK13652 3 LIETRDLCYSYS---GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK---ENIREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFN-LLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK13652 77 RKFVGLVFQNPDdQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKP 232
Cdd:PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-223 |
7.39e-42 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 154.49 E-value: 7.39e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:TIGR00958 479 IEFQDVSFSYPN-RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH--- 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPL------EIAGVSKAKRLKR-VAELIKLVGLEGKENAypSQLSGGQKQRVGIARA 154
Cdd:TIGR00958 555 RQVALVGQE-PVLFSGSVRENIAYGLtdtpdeEIMAAAKAANAHDfIMEFPNGYDTEVGEKG--SQLSGGQKQRIAIARA 631
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 155 LANNPKVLLCDEATSALDPQttdsILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:TIGR00958 632 LVRKPRVLILDEATSALDAE----CEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMG 695
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-223 |
1.03e-41 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 145.32 E-value: 1.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnaR 81
Cdd:cd03252 1 ITFEHVRFRYKPDGPVI--LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR--R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QeISMIFQHfNLLWSRTVRDNIAFpleiagVSKAKRLKRVAELIKLVGL--------EGKENAYPSQ---LSGGQKQRVG 150
Cdd:cd03252 77 Q-VGVVLQE-NVLFNRSIRDNIAL------ADPGMSMERVIEAAKLAGAhdfiselpEGYDTIVGEQgagLSGGQRQRIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQG 218
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-224 |
1.07e-41 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 147.15 E-value: 1.07e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHG-DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVE----------------- 63
Cdd:PRK13651 3 IKVKNIVKIFNKKLPtELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEwifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 64 -VAGRTISEIKGKKLRNA---RQEISMIFQHFNL-LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL-EGKENAY 137
Cdd:PRK13651 83 vLEKLVIQKTRFKKIKKIkeiRRRVGVVFQFAEYqLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQRS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 138 PSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENG 217
Cdd:PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
....*..
gi 564752943 218 KVVEEGD 224
Cdd:PRK13651 242 KIIKDGD 248
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-224 |
1.25e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 152.61 E-value: 1.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:COG4987 334 LELEDVSFRYP--GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHfNLLWSRTVRDNIAfpleIA--GVSKAkrlkRVAELIKLVGLEGKENAYP-----------SQLSGGQKQR 148
Cdd:COG4987 411 --IAVVPQR-PHLFDTTLRENLR----LArpDATDE----ELWAALERVGLGDWLAALPdgldtwlgeggRRLSGGERRR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 149 VGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGD 224
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLER-MDRILVLEDGRIVEQGT 552
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-228 |
4.71e-41 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 150.34 E-value: 4.71e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRS-KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEV-AGRTISEI--KGKK 76
Cdd:TIGR03269 279 IIKVRNVSKRYISvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrVGDEWVDMtkPGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRN-ARQEISMIFQHFNLLWSRTVRDN------IAFPLEIAgvskakRLKRVAELiKLVGLEGKE-----NAYPSQLSGG 144
Cdd:TIGR03269 359 GRGrAKRYIGILHQEYDLYPHRTVLDNlteaigLELPDELA------RMKAVITL-KMVGFDEEKaeeilDKYPDELSEG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 145 QKQRVGIARALANNPKVLLCDEATSALDPQT----TDSILGLLSDINErlglTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITkvdvTHSILKAREEMEQ----TFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
....*...
gi 564752943 221 EEGDVLNV 228
Cdd:TIGR03269 508 KIGDPEEI 515
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-224 |
5.17e-41 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 143.45 E-value: 5.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN---LRWLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLV-GLEGKEN----AYPSQLSGGQKQRVGIARALA 156
Cdd:cd03249 77 SQIGLVSQE-PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFImSLPDGYDtlvgERGSQLSGGQKQRIAIARALL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDIneRLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGD 224
Cdd:cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGT 220
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-257 |
7.38e-41 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 149.57 E-value: 7.38e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKiyrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQ--PTSGTV----------------- 62
Cdd:TIGR03269 1 IEVKNLTK----KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIiyhvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 63 ------EVAGRTISEIK-------GKKLRNARQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLV 128
Cdd:TIGR03269 77 kvgepcPVCGGTLEPEEvdfwnlsDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 129 GLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKIC 208
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 564752943 209 HRVAVMENGKVVEEGD---VLNVFLKPQEEMTKRFVQQVTEPV-ETQETLKHF 257
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTpdeVVAVFMEGVSEVEKECEVEVGEPIiKVRNVSKRY 289
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-220 |
7.49e-41 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 142.01 E-value: 7.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 7 VSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklRNARQEISM 86
Cdd:cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------KERRKSIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 87 IFQHFNL-LWSRTVRDNIAFPLEIAGVSKAKrlkrVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCD 165
Cdd:cd03226 76 VMQDVDYqLFTDSVREELLLGLKELDAGNEQ----AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 166 EATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:cd03226 152 EPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-232 |
9.45e-41 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 146.14 E-value: 9.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgKKLRNa 80
Cdd:PRK11650 3 GLKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADRD- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK11650 78 ---IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDP----QTTDSILGLlsdiNERLGLTIVLITHE----MhvirKICHRVAVMeNGKVVEE-GDVLNVFLK 231
Cdd:PRK11650 155 VFLFDEPLSNLDAklrvQMRLEIQRL----HRRLKTTSLYVTHDqveaM----TLADRVVVM-NGGVAEQiGTPVEVYEK 225
|
.
gi 564752943 232 P 232
Cdd:PRK11650 226 P 226
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-241 |
1.02e-40 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 143.78 E-value: 1.02e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHG-----DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgK 75
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGwfrrqTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF---G 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 76 KLRNARQEISMIFQHFNLlwSRTVRDNIA----FPLEI-AGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRV 149
Cdd:PRK15112 81 DYSYRSQRIRMIFQDPST--SLNPRQRISqildFPLRLnTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 150 GIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
250
....*....|..
gi 564752943 230 LKPQEEMTKRFV 241
Cdd:PRK15112 239 ASPLHELTKRLI 250
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-225 |
1.18e-40 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 142.53 E-value: 1.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYR------------------SKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTV 62
Cdd:COG1134 4 MIEVENVSKSYRlyhepsrslkelllrrrrTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 63 EVAGRTISEIkgkklrnarqEISMIFQHfnllwSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENA----YP 138
Cdd:COG1134 84 EVNGRVSALL----------ELGAGFHP-----ELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQpvktYS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 139 SqlsgGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:COG1134 149 S----GMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGR 223
|
....*..
gi 564752943 219 VVEEGDV 225
Cdd:COG1134 224 LVMDGDP 230
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-200 |
1.47e-40 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 141.08 E-value: 1.47e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkklRNA 80
Cdd:COG4133 2 MLEAENLSCRR----GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAR----EDY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFqHFNLLWSR-TVRDNIAFPLEIAGVSKAKRlkRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:COG4133 74 RRRLAYLG-HADGLKPElTVRENLRFWAALYGLRADRE--AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHE 200
Cdd:COG4133 151 PLWLLDEPFTALDAAGVALLAELIAAHLAR-GGAVLLTTHQ 190
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-223 |
3.72e-40 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 140.43 E-value: 3.72e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGrtiseIKGKKLRNAR 81
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-----KSYQKNIEAL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNiafpLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03268 72 RRIGALIEAPGFYPNLTAREN----LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-224 |
5.30e-40 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 140.50 E-value: 5.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnA 80
Cdd:COG0410 3 MLEVENLHAGY----GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRI--A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISM------IFQHFnllwsrTVRDNiafpLEIAGVSK------AKRLKRVAEL--IklvgLEGKENAYPSQLSGGQK 146
Cdd:COG0410 77 RLGIGYvpegrrIFPSL------TVEEN----LLLGAYARrdraevRADLERVYELfpR----LKERRRQRAGTLSGGEQ 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 147 QRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:COG0410 143 QMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGT 219
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-241 |
1.33e-39 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 140.57 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 6 NVSKIYRSKHgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQ------PTSGTVEVAGRTISEIKGKKLRn 79
Cdd:PRK14246 12 NISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIKLR- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 arQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAE-LIKLVGL----EGKENAYPSQLSGGQKQRVGIARA 154
Cdd:PRK14246 90 --KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEeCLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 155 LANNPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQE 234
Cdd:PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
....*..
gi 564752943 235 EMTKRFV 241
Cdd:PRK14246 246 ELTEKYV 252
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
2-223 |
1.46e-39 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 147.80 E-value: 1.46e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhgDVNAV-QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNA 80
Cdd:TIGR03797 452 IEVDRVTFRYRP---DGPLIlDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ---DLAGLDVQAV 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLwSRTVRDNIAfpleiAGVSKAkrLKRVAELIKLVGLEGKENAYP-----------SQLSGGQKQRV 149
Cdd:TIGR03797 526 RRQLGVVLQNGRLM-SGSIFENIA-----GGAPLT--LDEAWEAARMAGLAEDIRAMPmgmhtviseggGTLSGGQRQRL 597
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 150 GIARALANNPKVLLCDEATSALDPQT----TDSIlgllsdinERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTqaivSESL--------ERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQG 666
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-219 |
1.95e-39 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 139.81 E-value: 1.95e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVeVAGRTiseikgkKLRNARQE 83
Cdd:PRK11247 15 LNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTA-------PLAEARED 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNIAfpLEIAGVSKAKRLKRVAEliklVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:PRK11247 83 TRLMFQDARLLPWKKVIDNVG--LGLKGQWRDAALQALAA----VGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
23-223 |
2.00e-39 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 142.56 E-value: 2.00e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGKKLRNARQEISMIFQHFNLLWSRTVRD 101
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLfDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 102 NIAFpleiaGVSKAK---RLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:TIGR02142 95 NLRY-----GMKRARpseRRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-224 |
3.29e-39 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 138.44 E-value: 3.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkKL---RNA 80
Cdd:cd03218 3 AENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT-----KLpmhKRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINER-LGltiVLIT-HEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRgIG---VLITdHNVRETLSITDRAYIIYEGKVLAEGT 216
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
11-231 |
5.42e-39 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 139.60 E-value: 5.42e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 11 YRSKHGdVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIsEIKGKKLRNARQEISMIFQH 90
Cdd:PRK13636 13 YNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMKLRESVGMVFQD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 91 -FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:PRK13636 91 pDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 170 ALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLK 231
Cdd:PRK13636 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
10-242 |
5.85e-39 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 144.46 E-value: 5.85e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 10 IYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSS----LIRLLNgleqpTSGTVEVAGRTISEIKGKKLRNARQEIS 85
Cdd:PRK15134 291 ILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQ 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 86 MIFQHFN-LLWSR-TVRDNIAFPLEI--AGVSKAKRLKRVAELIKLVGLEGK-ENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK15134 366 VVFQDPNsSLNPRlNVLQIIEEGLRVhqPTLSAAQREQQVIAVMEEVGLDPEtRHRYPAEFSGGQRQRIAIARALILKPS 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRF 240
Cdd:PRK15134 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQL 525
|
..
gi 564752943 241 VQ 242
Cdd:PRK15134 526 LA 527
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-219 |
7.69e-39 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 137.60 E-value: 7.69e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:cd03248 12 VKFQNVTFAYPTR-PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPLE-------IAGVSKAKRLKRVAELIKLVGLEGKENAypSQLSGGQKQRVGIARA 154
Cdd:cd03248 88 SKVSLVGQE-PVLFARSLQDNIAYGLQscsfecvKEAAQKAHAHSFISELASGYDTEVGEKG--SQLSGGQKQRVAIARA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 155 LANNPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKiCHRVAVMENGKV 219
Cdd:cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPER--RTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-224 |
8.32e-39 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 137.85 E-value: 8.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkKL--- 77
Cdd:COG1137 3 TLEAENLVKSYGKRT----VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIT-----HLpmh 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNAR-------QEISmIFQhfNLlwsrTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVG 150
Cdd:COG1137 74 KRARlgigylpQEAS-IFR--KL----TVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVE 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINER-LGltiVLIT-HEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:COG1137 147 IARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERgIG---VLITdHNVRETLGICDRAYIISEGKVLAEGT 219
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-224 |
1.60e-38 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 136.98 E-value: 1.60e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:cd03251 1 VEFKNVTFRYPGD--GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT---LASLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIklvglEGKENAYP-------SQLSGGQKQRVGI 151
Cdd:cd03251 76 RQIGLVSQD-VFLFNDTVAENIAYGRPGATreeVEEAARAANAHEFI-----MELPEGYDtvigergVKLSGGQRQRIAI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 152 ARALANNPKVLLCDEATSALDPQTTDsilgLLSDINERL--GLTIVLITHEMHVIRKIcHRVAVMENGKVVEEGD 224
Cdd:cd03251 150 ARALLKDPPILILDEATSALDTESER----LVQAALERLmkNRTTFVIAHRLSTIENA-DRIVVLEDGKIVERGT 219
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-219 |
3.11e-38 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 134.27 E-value: 3.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:cd03246 1 LEVENVS--FRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD---PNELG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLwSRTVRDNIafpleiagvskakrlkrvaeliklvglegkenaypsqLSGGQKQRVGIARALANNPKV 161
Cdd:cd03246 76 DHVGYLPQDDELF-SGSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRkICHRVAVMENGKV 219
Cdd:cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-258 |
3.75e-38 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 137.24 E-value: 3.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTS---GTVEVAGRTISEikgKKLR 78
Cdd:PRK13640 6 VEFKHVSFTY--PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTA---KTVW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:PRK13640 81 DIREKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIrKICHRVAVMENGKVVEEGDVLNVFlkPQEEMT 237
Cdd:PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF--SKVEML 237
|
250 260 270
....*....|....*....|....*....|....*...
gi 564752943 238 KR------FVQQ-----------VTEPVETQETLKHFL 258
Cdd:PRK13640 238 KEigldipFVYKlknklkekgisVPQEINTEEKLVQYL 275
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-232 |
4.88e-38 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 136.66 E-value: 4.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSkhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGrtISEIKGKKLRNA 80
Cdd:PRK13644 1 MIRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSKLQGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLW-SRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK13644 76 RKLVGIVFQNPETQFvGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITH---EMHVirkiCHRVAVMENGKVVEEGDVLNVFLKP 232
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHnleELHD----ADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-241 |
7.25e-38 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 135.81 E-value: 7.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-----EQPTSGTVEVAGRTISEIKGKKLRnarQEISMIFQH 90
Cdd:PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMDVIELR---RRVQMVFQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 91 FNLLWSRTVRDNIAFPLEIAGVSKAKR--LKRVAELIKLVGL----EGKENAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:PRK14247 91 PNPIPNLSIFENVALGLKLNRLVKSKKelQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFV 241
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEKYV 245
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-232 |
9.96e-38 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 137.55 E-value: 9.96e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKS----SLIRLL--NGLeqpTSGTVEVAGRTISEIKG 74
Cdd:PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLaaNGR---IGGSATFNGREILNLPE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 75 KKLRNAR-QEISMIFQH--FNLLWSRTVRDNIAFPLEI-AGVSKAKRLK---RVAELIKLVGLEGKENAYPSQLSGGQKQ 147
Cdd:PRK09473 89 KELNKLRaEQISMIFQDpmTSLNPYMRVGEQLMEVLMLhKGMSKAEAFEesvRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLN 227
Cdd:PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248
|
....*
gi 564752943 228 VFLKP 232
Cdd:PRK09473 249 VFYQP 253
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-223 |
1.82e-37 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 133.48 E-value: 1.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnaR 81
Cdd:cd03245 3 IEFRNVS--FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL---R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPleiAGVSKAKRLKRVAELI---KLVGLEGKENAYP-----SQLSGGQKQRVGIAR 153
Cdd:cd03245 78 RNIGYVPQD-VTLFYGTLRDNITLG---APLADDERILRAAELAgvtDFVNKHPNGLDLQigergRGLSGGQRQAVALAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSdiNERLGLTIVLITHEMHVIrKICHRVAVMENGKVVEEG 223
Cdd:cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLR--QLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-237 |
2.29e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 134.88 E-value: 2.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNA 80
Cdd:PRK13648 7 IIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD---DNFEKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK13648 82 RKHIGIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEM-------HVIrkichrvaVMENGKVVEEGDVLNVFlKP 232
Cdd:PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLseameadHVI--------VMNKGTVYKEGTPTEIF-DH 232
|
....*
gi 564752943 233 QEEMT 237
Cdd:PRK13648 233 AEELT 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
2-280 |
2.58e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 135.34 E-value: 2.58e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYR-----SKHGdvnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGK 75
Cdd:PRK13641 3 IKFENVDYIYSpgtpmEKKG----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItPETGNK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 76 KLRNARQEISMIFQhF--NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIA 152
Cdd:PRK13641 79 NLKKLRKKVSLVFQ-FpeAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDInERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFlkp 232
Cdd:PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF--- 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 564752943 233 qeemtkrfvqqvtepvETQETL-KHFLEETTSGR-TIKLTFVG-EAAESPL 280
Cdd:PRK13641 234 ----------------SDKEWLkKHYLDEPATSRfASKLEKGGfKFSEMPL 268
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-223 |
2.84e-37 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 136.50 E-value: 2.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNAR 81
Cdd:PRK13536 42 IDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP----ARARLAR 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-241 |
3.79e-37 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 133.81 E-value: 3.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-----EQPTSGTVEVAGRTISEIKGKKLRnARQEISMIFQ 89
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNIYSPDVDPIE-VRREVGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFNLLWSRTVRDNIAFPLEIAGVSKAKRL--KRVAELIKLVGL----EGKENAYPSQLSGGQKQRVGIARALANNPKVLL 163
Cdd:PRK14267 93 YPNPFPHLTIYDNVAIGVKLNGLVKSKKEldERVEWALKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 164 CDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFV 241
Cdd:PRK14267 173 MDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYV 248
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-238 |
5.30e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 134.36 E-value: 5.30e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHG-DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKG-KKLR 78
Cdd:PRK13645 7 IILDNVSYTYAKKTPfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKiKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQHFNL-LWSRTVRDNIAF-PLEIaGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARAL 155
Cdd:PRK13645 87 RLRKEIGLVFQFPEYqLFQETIEKDIAFgPVNL-GENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGII 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFlKPQEE 235
Cdd:PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF-SNQEL 244
|
...
gi 564752943 236 MTK 238
Cdd:PRK13645 245 LTK 247
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
2-229 |
1.02e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 133.75 E-value: 1.02e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIY-RSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGKKLRN 79
Cdd:PRK13646 3 IRFDNVSYTYqKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITItHKTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 ARQEISMIFQhF--NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGK-ENAYPSQLSGGQKQRVGIARALA 156
Cdd:PRK13646 83 VRKRIGMVFQ-FpeSQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDvMSQSPFQMSGGQMRKIAIVSILA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-244 |
1.13e-36 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 132.55 E-value: 1.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSkiYRSkhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKL--R 78
Cdd:COG4559 1 MLEAENLS--VRL--GGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELarR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NA--RQEISMIFqHFnllwsrTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKEN-AYPsQLSGGQKQRVGIARAL 155
Cdd:COG4559 77 RAvlPQHSSLAF-PF------TVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGrSYQ-TLSGGEQQRVQLARVL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 156 A-------NNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGdvlnv 228
Cdd:COG4559 149 AqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQG----- 222
|
250
....*....|....*.
gi 564752943 229 flKPQEEMTKRFVQQV 244
Cdd:COG4559 223 --TPEEVLTDELLERV 236
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-223 |
1.18e-36 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 131.50 E-value: 1.18e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKH------------------GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVE 63
Cdd:cd03220 1 IELENVSKSYPTYKggssslkklgilgrkgevGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 64 VAGRTISEIkgkklrnarqEISMIFQHfnllwSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSG 143
Cdd:cd03220 81 VRGRVSSLL----------GLGGGFNP-----ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 144 GQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03220 146 GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-227 |
1.23e-36 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 132.59 E-value: 1.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnA 80
Cdd:PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL--A 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQeISMIFQHFNLLWSRTVRDNIAFPLeIAGVSKAKRLKR-VAELIKLVGLEG-KENAYPsQLSGGQKQRVGIARALA-- 156
Cdd:PRK13548 76 RR-RAVLPQHSSLSFPFTVEEVVAMGR-APHGLSRAEDDAlVAAALAQVDLAHlAGRDYP-QLSGGEQQRVQLARVLAql 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 157 ----NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG---DVLN 227
Cdd:PRK13548 153 wepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGtpaEVLT 230
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-223 |
1.27e-36 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 131.97 E-value: 1.27e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:cd03253 1 IEFENVTFAY---DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHfNLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIklvglEGKENAYPSQ-------LSGGQKQRVGI 151
Cdd:cd03253 77 --IGVVPQD-TVLFNDTIGYNIRYGRPDATdeeVIEAAKAAQIHDKI-----MRFPDGYDTIvgerglkLSGGEKQRVAI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 152 ARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:cd03253 149 ARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
18-222 |
1.50e-36 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 131.44 E-value: 1.50e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAR-QEISMIFQHFNLLWS 96
Cdd:PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRaKHVGFVFQSFMLIPT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 97 RTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTT 176
Cdd:PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564752943 177 DSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEE 222
Cdd:PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
2-241 |
1.72e-36 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 135.16 E-value: 1.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrnar 81
Cdd:PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKA---KRLKRVAELIKLVGLEGKEnayPSQLSGGQKQRVGIARALANN 158
Cdd:PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEeinQRVNQVAEVLQLAHLLDRK---PKALSGGQRQRVAIGRTLVAE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 159 PKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEemtk 238
Cdd:PRK11000 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN---- 227
|
...
gi 564752943 239 RFV 241
Cdd:PRK11000 228 RFV 230
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
21-242 |
1.86e-36 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 132.13 E-value: 1.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKS-----SLIRLLNGLEQpTSGTVEVAGRTI--SEIKGKKlrnarqeISMIFQH--- 90
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSltcaaALGILPAGVRQ-TAGRVLLDGKPVapCALRGRK-------IATIMQNprs 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 91 -FNLLwsRTVRDNIAFPLEIAGvsKAKRLKRVAELIKLVGLEGKE---NAYPSQLSGGQKQRVGIARALANNPKVLLCDE 166
Cdd:PRK10418 91 aFNPL--HTMHTHARETCLALG--KPADDATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 167 ATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQ 242
Cdd:PRK10418 167 PTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
3-224 |
2.04e-36 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 132.20 E-value: 2.04e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 3 NLQNVSKIYRSKhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQ 82
Cdd:PRK11831 6 NLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQHFNLLWSRTVRDNIAFPL-EIAGVSKAkrLKRVAELIKL--VGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLrEHTQLPAP--LLHSTVMMKLeaVGLRGAAKLMPSELSGGMARRAALARAIALEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-246 |
3.37e-36 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 133.33 E-value: 3.37e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKS-SLIRLLNGLEQP---TSGTVEVAGRTISEIKGKK 76
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRN-ARQEISMIFQH--FNLLWSRTVRDNIAFPLEI-AGVSKAKRLKRVAELIKLVGL---EGKENAYPSQLSGGQKQRV 149
Cdd:PRK11022 83 RRNlVGAEVAMIFQDpmTSLNPCYTVGFQIMEAIKVhQGGNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMSQRV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 150 GIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242
|
250
....*....|....*..
gi 564752943 230 LKPQEEMTKRFVQQVTE 246
Cdd:PRK11022 243 RAPRHPYTQALLRALPE 259
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-224 |
4.85e-36 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 130.09 E-value: 4.85e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnavQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGR--TISEIkgkklr 78
Cdd:PRK10771 1 MLKLTDITWLYHHLP------MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdhTTTPP------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 nARQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANN 158
Cdd:PRK10771 69 -SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 159 PKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
15-241 |
7.30e-36 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 130.28 E-value: 7.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-----EQPTSGTVEVAGRTISEIKGKKLrNARQEISMIFQ 89
Cdd:PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIYSPRTDTV-DLRKEIGMVFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFNLlWSRTVRDNIAFPLEIAGVSKAKRLKRVAELiKLVGL----EGKENAYPSQ--LSGGQKQRVGIARALANNPKVLL 163
Cdd:PRK14239 94 QPNP-FPMSIYENVVYGLRLKGIKDKQVLDEAVEK-SLKGAsiwdEVKDRLHDSAlgLSGGQQQRVCIARVLATSPKIIL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 164 CDEATSALDP----QTTDSILGLLSDinerlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:PRK14239 172 LDEPTSALDPisagKIEETLLGLKDD------YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETED 245
|
..
gi 564752943 240 FV 241
Cdd:PRK14239 246 YI 247
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-229 |
1.04e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 131.01 E-value: 1.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVN-AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTI-SEIKGKKLR 78
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPFASrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVsSTSKQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 79 NARQEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEgKE--NAYPSQLSGGQKQRVGIARAL 155
Cdd:PRK13643 81 PVRKKVGVVFQFpESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA-DEfwEKSPFELSGGQMRRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-223 |
1.26e-35 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 128.77 E-value: 1.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:cd03244 3 IEFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHfNLLWSRTVRDNIAfPL------EIAGVSKAKRLKRVAELiKLVGLEGKENAYPSQLSGGQKQRVGIARAL 155
Cdd:cd03244 80 --ISIIPQD-PVLFSGTIRSNLD-PFgeysdeELWQALERVGLKEFVES-LPGGLDTVVEEGGENLSVGQRQLLCLARAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSdiNERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-223 |
1.29e-35 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 128.88 E-value: 1.29e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNar 81
Cdd:cd03254 3 IEFENVNFSYDEKK---PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qEISMIFQHfNLLWSRTVRDNIAFPLEIAgvskakRLKRVAELIKLVGL----EGKENAYPSQ-------LSGGQKQRVG 150
Cdd:cd03254 78 -MIGVVLQD-TFLFSGTIMENIRLGRPNA------TDEEVIEAAKEAGAhdfiMKLPNGYDTVlgenggnLSQGERQLLA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 151 IARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEG 219
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-246 |
1.44e-35 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 135.65 E-value: 1.44e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnAR 81
Cdd:COG4618 331 LSVENLT--VVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREEL--GR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 ------QEISmifqhfnlLWSRTVRDNIA-FP-LEIAGVSKAKRLKRVAELI-KL-------VGLEGkenaypSQLSGGQ 145
Cdd:COG4618 407 higylpQDVE--------LFDGTIAENIArFGdADPEKVVAAAKLAGVHEMIlRLpdgydtrIGEGG------ARLSGGQ 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 146 KQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRkICHRVAVMENGKVVEEGdv 225
Cdd:COG4618 473 RQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSLLA-AVDKLLVLRDGRVQAFG-- 548
|
250 260
....*....|....*....|.
gi 564752943 226 lnvflkPQEEMTKRFVQQVTE 246
Cdd:COG4618 549 ------PRDEVLARLARPAAA 563
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
15-238 |
2.08e-35 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 131.18 E-value: 2.08e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQP----TSGTVEVAGRTISEIKGKKLRN-ARQEISMIFQ 89
Cdd:COG4170 17 QGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSPRERRKiIGREIAMIFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFN--LLWSRTVRDNI--AFPLEIAGVS----KAKRLKRVAELIKLVGLEGKE---NAYPSQLSGGQKQRVGIARALANN 158
Cdd:COG4170 97 EPSscLDPSAKIGDQLieAIPSWTFKGKwwqrFKWRKKRAIELLHRVGIKDHKdimNSYPHELTEGECQKVMIAMAIANQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 159 PKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTK 238
Cdd:COG4170 177 PRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPYTK 256
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
14-234 |
7.48e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 128.67 E-value: 7.48e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikGKKLRNARQEISMIFQH-FN 92
Cdd:PRK13642 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT---AENVWNLRRKIGMVFQNpDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 93 LLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PRK13642 93 QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 173 PQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGDVLNVFLKPQE 234
Cdd:PRK13642 173 PTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSED 233
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-239 |
2.98e-34 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 131.75 E-value: 2.98e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKS----SLIRLLngleqPT------SGTVEVAGRTIS 70
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLL-----PSppvvypSGDIRFHGESLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 71 EIKGKKLRNAR-QEISMIFQH----FNLLWS-----------------RTVRDNIAFPLEIAGVSKA-KRLkrvaelikl 127
Cdd:PRK15134 80 HASEQTLRGVRgNKIAMIFQEpmvsLNPLHTlekqlyevlslhrgmrrEAARGEILNCLDRVGIRQAaKRL--------- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 128 vglegkeNAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKI 207
Cdd:PRK15134 151 -------TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKL 223
|
250 260 270
....*....|....*....|....*....|..
gi 564752943 208 CHRVAVMENGKVVEEGDVLNVFLKPQEEMTKR 239
Cdd:PRK15134 224 ADRVAVMQNGRCVEQNRAATLFSAPTHPYTQK 255
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-225 |
1.05e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 125.23 E-value: 1.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNar 81
Cdd:PRK13647 5 IEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qEISMIFQH-FNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK13647 80 -KVGLVFQDpDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-199 |
1.20e-33 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 123.36 E-value: 1.20e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSkIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQP---TSGTVEVAGRTISEikgkkL 77
Cdd:COG4136 1 MLSLENLT-ITL---GGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTA-----L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNARQEISMIFQ------HFNllwsrtVRDNIAFPLEiAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGI 151
Cdd:COG4136 72 PAEQRRIGILFQddllfpHLS------VGENLAFALP-PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVAL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564752943 152 ARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITH 199
Cdd:COG4136 145 LRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTH 192
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-214 |
1.30e-33 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 129.71 E-value: 1.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnaR 81
Cdd:TIGR02857 322 LEFSGVSVAYP---GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW---R 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLV-----GLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:TIGR02857 396 DQIAWVPQH-PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVaalpqGLDTPIGEGGAGLSGGQAQRLALARAFL 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 157 NNPKVLLCDEATSALDPQT----TDSILGLLSdinerlGLTIVLITHEMHVIRKiCHRVAVM 214
Cdd:TIGR02857 475 RDAPLLLLDEPTAHLDAETeaevLEALRALAQ------GRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-223 |
2.98e-33 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 123.97 E-value: 2.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL---EQPTSGTVEVAGRTISEIK--GK 75
Cdd:PRK09984 4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTVQREGrlAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 76 KLRNARQEISMIFQHFNLLWSRTVRDNI------AFPLEIAGVSKAKRLKRVAELIKL--VGLEGKENAYPSQLSGGQKQ 147
Cdd:PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVligalgSTPFWRTCFSWFTREQKQRALQALtrVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-241 |
3.83e-33 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 123.61 E-value: 3.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-----EQPTSGTVEVAGRTISEiKGKK 76
Cdd:PRK14258 8 IKVNNLSFYYDTQ----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFNQNIYE-RRVN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRNARQEISMIFQHFNLlWSRTVRDNIAFPLEIAGVSKAKRLKRVAE-LIKLVGL--EGKENAYPS--QLSGGQKQRVGI 151
Cdd:PRK14258 83 LNRLRRQVSMVHPKPNL-FPMSVYDNVAYGVKIVGWRPKLEIDDIVEsALKDADLwdEIKHKIHKSalDLSGGQQQRLCI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 152 ARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMEN-----GKVVEEGDVL 226
Cdd:PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTK 241
|
250
....*....|....*
gi 564752943 227 NVFLKPQEEMTKRFV 241
Cdd:PRK14258 242 KIFNSPHDSRTREYV 256
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-227 |
5.51e-33 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 122.50 E-value: 5.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSkIYRskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSG-TVEVAGRT-----ISEIkg 74
Cdd:COG1119 3 LLELRNVT-VRR---GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERrggedVWEL-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 75 kklrnaRQEI---SMIFQHfNLLWSRTVRD--------NIAFPLEiagVSKAKRlKRVAELIKLVGLEGKENAYPSQLSG 143
Cdd:COG1119 77 ------RKRIglvSPALQL-RFPRDETVLDvvlsgffdSIGLYRE---PTDEQR-ERARELLELLGLAHLADRPFGTLSQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 144 GQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:COG1119 146 GEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAG 225
|
....*..
gi 564752943 224 ---DVLN 227
Cdd:COG1119 226 pkeEVLT 232
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
20-223 |
8.27e-33 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 128.15 E-value: 8.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNArqeISMIFQHfNLLWSRTV 99
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN---IAVVFQD-AGLFNRSI 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNI------AFPLEIAGVSKAKR-----LKRVAELIKLVGLEGkenaypSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:PRK13657 426 EDNIrvgrpdATDEEMRAAAERAQahdfiERKPDGYDTVVGERG------RQLSGGERQRLAIARALLKDPPILILDEAT 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 169 SALDPQTTDSILGLLSDIneRLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:PRK13657 500 SALDVETEAKVKAALDEL--MKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-244 |
9.08e-33 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 128.43 E-value: 9.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKS----SLIRLLnglEQpTSGTVEVAGR--------- 67
Cdd:PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLL---EQ-AGGLVQCDKMllrrrsrqv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 68 -TISEIKGKKLRNAR-QEISMIFQH----FNLLWsrTVRDNIAFPLEI-AGVSKAKRL---KRVAELIKLVGLEGKENAY 137
Cdd:PRK10261 88 iELSEQSAAQMRHVRgADMAMIFQEpmtsLNPVF--TVGEQIAESIRLhQGASREEAMveaKRMLDQVRIPEAQTILSRY 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 138 PSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENG 217
Cdd:PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
250 260
....*....|....*....|....*..
gi 564752943 218 KVVEEGDVLNVFLKPQEEMTKRFVQQV 244
Cdd:PRK10261 246 EAVETGSVEQIFHAPQHPYTRALLAAV 272
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-220 |
1.58e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 121.73 E-value: 1.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSkhGDVN---AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKl 77
Cdd:COG1101 1 MLELKNLSKTFNP--GTVNekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYK- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 RNARqeISMIFQH------FNLlwsrTVRDNIA--------FPLEIaGVSKAKRlKRVAELIKLV--GLEGKENAYPSQL 141
Cdd:COG1101 78 RAKY--IGRVFQDpmmgtaPSM----TIEENLAlayrrgkrRGLRR-GLTKKRR-ELFRELLATLglGLENRLDTKVGLL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:COG1101 150 SGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
2.94e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 122.65 E-value: 2.94e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKH-GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEV----------AGRTI 69
Cdd:PRK13631 21 ILRVKNLYCVFDEKQeNELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkknNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 70 SEIKGKKLRNA---RQEISMIFQHFNL-LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGL-EGKENAYPSQLSGG 144
Cdd:PRK13631 101 TNPYSKKIKNFkelRRRVSMVFQFPEYqLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSGG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 145 QKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
....*...
gi 564752943 225 VLNVFLKP 232
Cdd:PRK13631 260 PYEIFTDQ 267
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
3-224 |
6.80e-32 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 119.17 E-value: 6.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 3 NLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeiKGKKLRNARQ 82
Cdd:TIGR03410 2 EVSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT--KLPPHERARA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EIS------MIFQHFnllwsrTVRDNIAFPLEIAGVSKAKRLKRVAELIKLvgLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:TIGR03410 76 GIAyvpqgrEIFPRL------TVEENLLTGLAALPRRSRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQQQLAIARALV 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGD 224
Cdd:TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
20-219 |
1.10e-31 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 117.15 E-value: 1.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNARQE-ISMI---FQHFNLLW 95
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGK---PVTRRSPRDAIRAgIAYVpedRKREGLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAFPleiagvskakrlkrvaeliklvglegkenaypSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQT 175
Cdd:cd03215 92 DLSVAENIALS--------------------------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564752943 176 TDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:cd03215 140 KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-217 |
1.12e-31 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 118.69 E-value: 1.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGD---VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEV--AGRTI------ 69
Cdd:COG4778 4 LLEVENLSKTFTLHLQGgkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhDGGWVdlaqas 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 70 -SEIkgkkLRNARQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLegKEN---AYPSQLSGGQ 145
Cdd:COG4778 84 pREI----LALRRRTIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNL--PERlwdLPPATFSGGE 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 146 KQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENG 217
Cdd:COG4778 158 QQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-224 |
2.15e-31 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 124.17 E-value: 2.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:PRK11160 339 LTLNNVS--FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLwSRTVRDNIAFPLEIAGVSKAKR-LKRVaELIKLvgLEGKE--NAY----PSQLSGGQKQRVGIARA 154
Cdd:PRK11160 416 --ISVVSQRVHLF-SATLRDNLLLAAPNASDEALIEvLQQV-GLEKL--LEDDKglNAWlgegGRQLSGGEQRRLGIARA 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 155 LANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKIcHRVAVMENGKVVEEGD 224
Cdd:PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-223 |
4.27e-31 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 123.29 E-value: 4.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:TIGR02203 331 VEFRNVTFRYPGR--DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT---LASLR 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFnLLWSRTVRDNIAFPlEIAGVSKAK--RLKRVAELIKLV-----GLEGKENAYPSQLSGGQKQRVGIARA 154
Cdd:TIGR02203 406 RQVALVSQDV-VLFNDTIANNIAYG-RTEQADRAEieRALAAAYAQDFVdklplGLDTPIGENGVLLSGGQRQRLAIARA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 155 LANNPKVLLCDEATSALDPQTTDSILGLLsdinERL--GLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAAL----ERLmqGRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
5-244 |
4.51e-31 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 116.73 E-value: 4.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 5 QNVSKIYRSKHgdvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkklRNARQEI 84
Cdd:TIGR03740 4 KNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT-------RKDLHKI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 85 SMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAkrlkRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDS----RIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVlnvflKPQEEMTKRFVQQV 244
Cdd:TIGR03740 149 DEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKI-----NKSENLEKLFVEVV 222
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
20-223 |
9.43e-31 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 117.01 E-value: 9.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnARQEISMIFQHFNLLWSRTV 99
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI--ARMGVVRTFQHVRLFREMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDN-------------IAFPLEIAGVSKAKR--LKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:PRK11300 98 IENllvaqhqqlktglFSGLLKTPAFRRAESeaLDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:PRK11300 178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-228 |
1.57e-30 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 121.04 E-value: 1.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKiyrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrNA 80
Cdd:PRK09700 5 YISMAGIGK----SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL--AA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFP-------LEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIAR 153
Cdd:PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGrhltkkvCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 154 ALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNV 228
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
23-223 |
3.05e-30 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 120.70 E-value: 3.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNArqeISMIFQH---FNllwsRTV 99
Cdd:COG5265 376 GVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAA---IGIVPQDtvlFN----DTI 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNIAFPLEIAG---VSKAKRLKRVAELIK--------LVGLEG-KenaypsqLSGGQKQRVGIARALANNPKVLLCDEA 167
Cdd:COG5265 449 AYNIAYGRPDASeeeVEAAARAAQIHDFIEslpdgydtRVGERGlK-------LSGGEKQRVAIARTLLKNPPILIFDEA 521
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 168 TSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:COG5265 522 TSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTIVD-ADEILVLEAGRIVERG 574
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-223 |
1.21e-29 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 118.61 E-value: 1.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrnA 80
Cdd:PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK---A 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQ-EISMIFQHFNLLWSRTVRDNIAFPLEiagvSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK15439 84 HQlGIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 160 KVLLCDEATSALDPQTTDSilgLLSDINERL--GLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:PRK15439 160 RILILDEPTASLTPAETER---LFSRIRELLaqGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
23-228 |
4.64e-29 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 114.59 E-value: 4.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEI-KGKKLRNARQEISMIFQHFNLLWSRTVRD 101
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAeKGICLPPEKRRIGYVFQDARLFPHYKVRG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 102 NIAFpleiaGVSKakrlKRVAELIKLVGLEGKE---NAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:PRK11144 96 NLRY-----GMAK----SMVAQFDKIVALLGIEpllDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564752943 179 ILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNV 228
Cdd:PRK11144 167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-218 |
5.91e-29 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 110.64 E-value: 5.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVNAV-QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtiseikgkklrna 80
Cdd:cd03250 1 ISVEDASFTWDSGEQETSFTlKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeISMIFQhfnLLW--SRTVRDNIAFPLEIagvsKAKRLKRVaelIKLVGLEGKENAYPSQ-----------LSGGQKQ 147
Cdd:cd03250 68 ---IAYVSQ---EPWiqNGTIRENILFGKPF----DEERYEKV---IKACALEPDLEILPDGdlteigekginLSGGQKQ 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQT-----TDSILGLLSDinerlGLTIVLITHEMHVIRKiCHRVAVMENGK 218
Cdd:cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVgrhifENCILGLLLN-----NKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
20-222 |
8.58e-29 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 115.89 E-value: 8.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIseikgkKLRNARQEISM------------- 86
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPV------RIRSPRDAIRAgiayvpedrkgeg 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 87 IFQHFnllwsrTVRDNIAFP----LEIAG-VSKAKRLKRVAELIKLVGLegkenAYPS------QLSGGQKQRVGIARAL 155
Cdd:COG1129 341 LVLDL------SIRENITLAsldrLSRGGlLDRRRERALAEEYIKRLRI-----KTPSpeqpvgNLSGGNQQKVVLAKWL 409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:COG1129 410 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIVGE 475
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
5-247 |
9.89e-29 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 111.56 E-value: 9.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 5 QNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGR--------TISEIKGKK 76
Cdd:PRK11701 10 RGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrdlyALSEAERRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LrnARQEISMIFQHfnllwsrtVRD----------NIAFPLEIAGVSKAKRLKRVAelikLVGLEGKENA------YPSQ 140
Cdd:PRK11701 86 L--LRTEWGFVHQH--------PRDglrmqvsaggNIGERLMAVGARHYGDIRATA----GDWLERVEIDaariddLPTT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
250 260
....*....|....*....|....*..
gi 564752943 221 EEGDVLNVFLKPQEEMTKRFVQQVTEP 247
Cdd:PRK11701 232 ESGLTDQVLDDPQHPYTQLLVSSVLQV 258
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-223 |
1.21e-28 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 108.94 E-value: 1.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrsKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGkklrNAR 81
Cdd:cd03247 1 LSINNVSFSY--PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK----ALS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLlWSRTVRDNIAfpleiagvskakrlkrvaeliklvglegkenaypSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03247 75 SLISVLNQRPYL-FDTTLRNNLG----------------------------------RRFSGGERQRLALARILLQDAPI 119
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKIcHRVAVMENGKVVEEG 223
Cdd:cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
4-223 |
4.61e-28 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 108.90 E-value: 4.61e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQP---TSGTVEVAGRtisEIKGKKLRna 80
Cdd:cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQ---PRKPDQFQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rQEISMIFQHFNLLWSRTVRDNIAFPLEIAG---VSKAKRLKRVA-ELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:cd03234 81 -KCVAYVRQDDILLPGLTVRETLTYTAILRLprkSSDAIRKKRVEdVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-241 |
5.45e-28 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 109.87 E-value: 5.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 5 QNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGtVEVAGRTIseIKGKKLRNA---- 80
Cdd:PRK14243 14 ENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG-FRVEGKVT--FHGKNLYAPdvdp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 ---RQEISMIFQHFNLlWSRTVRDNIAFPLEIAGVSK-----AKRLKRVAELIKLVGLEGKENAypSQLSGGQKQRVGIA 152
Cdd:PRK14243 87 vevRRRIGMVFQKPNP-FPKSIYDNIAYGARINGYKGdmdelVERSLRQAALWDEVKDKLKQSG--LSLSGGQQQRLCIA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVM---------ENGKVVEEG 223
Cdd:PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFD 241
|
250
....*....|....*...
gi 564752943 224 DVLNVFLKPQEEMTKRFV 241
Cdd:PRK14243 242 RTEKIFNSPQQQATRDYV 259
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-223 |
7.72e-28 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 114.07 E-value: 7.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSkiYRSKHGDvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:TIGR01193 474 IVINDVS--YSYGYGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR--- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAF----PLEIAGVSKAKRLKRVAELIKLV--GLEGKENAYPSQLSGGQKQRVGIARAL 155
Cdd:TIGR01193 548 QFINYLPQE-PYIFSGSILENLLLgakeNVSQDEIWAACEIAEIKDDIENMplGYQTELSEEGSSISGGQKQRIALARAL 626
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 156 ANNPKVLLCDEATSALDPQTTDSILGLLSDINERlglTIVLITHEMHVIRKIcHRVAVMENGKVVEEG 223
Cdd:TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQG 690
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-244 |
1.47e-27 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 108.18 E-value: 1.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnA 80
Cdd:PRK11231 2 TLRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL--A 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQeISMIFQHFNLLWSRTVRDNIAF---P-LEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALA 156
Cdd:PRK11231 76 RR-LALLPQHHLTPEGITVRELVAYgrsPwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGdvlnvflKPQEEM 236
Cdd:PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG-------TPEEVM 226
|
....*...
gi 564752943 237 TKRFVQQV 244
Cdd:PRK11231 227 TPGLLRTV 234
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-249 |
2.45e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 108.26 E-value: 2.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSG-----TVEVAGRTIseIKGKKLRNARQEISMIFQHFNLlW 95
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSI--FNYRDVLEFRRRVGMLFQRPNP-F 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAFPLEIAGVSKAKRLKRVAEL-IKLVGL----EGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Cdd:PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQArLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 171 LDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFLKPQEEMTKRFVQQVTEPVE 249
Cdd:PRK14271 194 LDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSGDVK 270
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-223 |
2.56e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 106.10 E-value: 2.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL--EQPTSGTVEVAGRTISEIKGKKLrnarqeISMIFQHFNLLWSRT 98
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGRPLDKRSFRKI------IGYVPQDDILHPTLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 99 VRDNIAFpleiagvskakrlkrVAELiklvglegkenaypSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:cd03213 99 VRETLMF---------------AAKL--------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564752943 179 ILGLLSDInERLGLTIVLITHEM-HVIRKICHRVAVMENGKVVEEG 223
Cdd:cd03213 150 VMSLLRRL-ADTGRTIICSIHQPsSEIFELFDKLLLLSQGRVIYFG 194
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-231 |
6.25e-27 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 112.03 E-value: 6.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNARQEISMIFQHFNLLWSRTV 99
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE----TNLDAVRQSLGMCPQHNILFHHLTV 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSI 179
Cdd:TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564752943 180 LGLLsdINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLnvFLK 231
Cdd:TIGR01257 1101 WDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPL--FLK 1148
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
21-244 |
1.26e-26 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 106.03 E-value: 1.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnARqEISMIFQHFNLLWSRTVR 100
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF--AR-KVAYLPQQLPAAEGMTVR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIA---FPLEIA-GVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTT 176
Cdd:PRK10575 104 ELVAigrYPWHGAlGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 177 DSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDvlnvflkPQEEMTKRFVQQV 244
Cdd:PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT-------PAELMRGETLEQI 244
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-221 |
1.58e-26 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 107.20 E-value: 1.58e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeqpTSGTVEV-AGR-TISEIKGKKL- 77
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVtADRmRFDDIDLLRLs 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 78 -RNARQ----EISMIFQHFNLLWSRTVRDNIAFPLEIAGVS-KAK-------RLKRVAELIKLVGLEGKENA---YPSQL 141
Cdd:PRK15093 80 pRERRKlvghNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTyKGRwwqrfgwRKRRAIELLHRVGIKDHKDAmrsFPYEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVE 221
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
16-219 |
3.33e-26 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 109.44 E-value: 3.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLrNARQEISMIFQHFNLLW 95
Cdd:NF033858 277 GDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQ---PVDAGDI-ATRRRVGYMSQAFSLYG 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQT 175
Cdd:NF033858 353 ELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVA 432
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564752943 176 TDSILGLLSDINERLGLTIVLITHEMH-VIRkiCHRVAVMENGKV 219
Cdd:NF033858 433 RDMFWRLLIELSREDGVTIFISTHFMNeAER--CDRISLMHAGRV 475
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
18-221 |
6.22e-26 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 107.69 E-value: 6.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTiseikgKKLRNAR----QEISMIFQHFNL 93
Cdd:PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE------MRFASTTaalaAGVAIIYQELHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 LWSRTVRDNI---AFPlEIAGVSKAKRLK-RVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:PRK11288 91 VPEMTVAENLylgQLP-HKGGIVNRRLLNyEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564752943 170 ALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVE 221
Cdd:PRK11288 170 SLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-225 |
1.24e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.07 E-value: 1.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVagrtiseikGKKLRna 80
Cdd:COG0488 315 VLELEGLSKSY----GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL---------GETVK-- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeISMIFQHFNLL-WSRTVRDniafplEIAGVSKAKRLKRVAELIKLVGLEGKE-NAYPSQLSGGQKQRVGIARALANN 158
Cdd:COG0488 380 ---IGYFDQHQEELdPDKTVLD------ELRDGAPGGTEQEVRGYLGRFLFSGDDaFKPVGVLSGGEKARLALAKLLLSP 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 159 PKVLLCDEATSALDPQTTDSILGLLSDINerlGlTIVLITHEMHVIRKICHRVAVMENGKVVE-EGDV 225
Cdd:COG0488 451 PNVLLLDEPTNHLDIETLEALEEALDDFP---G-TVLLVSHDRYFLDRVATRILEFEDGGVREyPGGY 514
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
14-229 |
1.64e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 103.16 E-value: 1.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgKKLRNARQEISMIFQHFNL 93
Cdd:PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK-RGLLALRQQVATVFQDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 -LWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PRK13638 89 qIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 173 PQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVF 229
Cdd:PRK13638 169 PAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-223 |
4.40e-25 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 100.56 E-value: 4.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNAr 81
Cdd:cd03369 7 IEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLwSRTVRDNIAFPLEIAGVSKAKRLkRVAeliklvglEGKENaypsqLSGGQKQRVGIARALANNPKV 161
Cdd:cd03369 84 --LTIIPQDPTLF-SGTIRSNLDPFDEYSDEEIYGAL-RVS--------EGGLN-----LSQGQRQLLCLARALLKRPRV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDinERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:cd03369 147 LVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-223 |
6.50e-25 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 105.49 E-value: 6.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:PRK11176 342 IEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT---LASLR 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLlWSRTVRDNIAFPLE----IAGVSKAKRLKRVAELIKLV--GLEG--KENAypSQLSGGQKQRVGIAR 153
Cdd:PRK11176 417 NQVALVSQNVHL-FNDTIANNIAYARTeqysREQIEEAARMAYAMDFINKMdnGLDTviGENG--VLLSGGQRQRIAIAR 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 154 ALANNPKVLLCDEATSALDpqtTDSILGLLSDINE-RLGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:PRK11176 494 ALLRDSPILILDEATSALD---TESERAIQAALDElQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERG 560
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-226 |
1.37e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 103.00 E-value: 1.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGkklRNA 80
Cdd:PRK09536 3 MIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA---RAA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIafplEIAGVSKAKRLKR--------VAELIKLVGLEGKENAYPSQLSGGQKQRVGIA 152
Cdd:PRK09536 76 SRRVASVPQDTSLSFEFDVRQVV----EMGRTPHRSRFDTwtetdraaVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG---DVL 226
Cdd:PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGppaDVL 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-239 |
2.43e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 99.20 E-value: 2.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKhgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKlrNAR 81
Cdd:PRK10895 4 LTAKNLAKAYKGR----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA--RAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLWSRTVRDNIAFPLEI-AGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVFlkpQEEMTKR 239
Cdd:PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL---QDEHVKR 232
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
16-200 |
2.54e-24 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 99.02 E-value: 2.54e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnarQEISMIFQHfNLLW 95
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR---QQVSYCAQT-PTLF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAFPLEIAGvsKAKRLKRVAELIKLVGL-EGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQ 174
Cdd:PRK10247 94 GDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
|
170 180
....*....|....*....|....*.
gi 564752943 175 TTDSILGLLSDINERLGLTIVLITHE 200
Cdd:PRK10247 172 NKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
16-199 |
4.88e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 102.44 E-value: 4.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNArqeISMIFQ--Hfnl 93
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR---VSVCAQdaH--- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 LWSRTVRDNIAFPLEIAG---VSKAKRLKRVAELIKLV--GLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:TIGR02868 420 LFDTTVRENLRLARPDATdeeLWAALERVGLADWLRALpdGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 499
|
170 180 190
....*....|....*....|....*....|.
gi 564752943 169 SALDPQTTDSILGLLSDINErlGLTIVLITH 199
Cdd:TIGR02868 500 EHLDAETADELLEDLLAALS--GRTVVLITH 528
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
24-199 |
1.13e-23 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 96.27 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkkLRNARQEISMIFQHFNLLWSR-TVRDN 102
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAE-----QRDEPHENILYLGHLPGLKPElSALEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 103 IAFPLEIAGVSKakrlKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGL 182
Cdd:TIGR01189 94 LHFWAAIHGGAQ----RTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGL 169
|
170
....*....|....*..
gi 564752943 183 LSDINERLGLTIvLITH 199
Cdd:TIGR01189 170 LRAHLARGGIVL-LTTH 185
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-219 |
2.91e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.14 E-value: 2.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAgrtiseikgkklRNARqe 83
Cdd:COG0488 1 LENLSKSF----GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP------------KGLR-- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNI--AFP-----------LEIAGVSKAKRLKRVAEL---------------IK--LVGL--- 130
Cdd:COG0488 63 IGYLPQEPPLDDDLTVLDTVldGDAelraleaeleeLEAKLAEPDEDLERLAELqeefealggweaearAEeiLSGLgfp 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 131 EGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDpqtTDSILGLLSDINERLGlTIVLITHEMHVIRKICHR 210
Cdd:COG0488 143 EEDLDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD---LESIEWLEEFLKNYPG-TVLVVSHDRYFLDRVATR 218
|
....*....
gi 564752943 211 VAVMENGKV 219
Cdd:COG0488 219 ILELDRGKL 227
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
21-199 |
5.89e-23 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 99.50 E-value: 5.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseikgkklRNARQEISMIFQhfnllwsR--- 97
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA--------------RPAGARVLFLPQ-------Rpyl 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 98 ---TVRDNIAFPLEIAGVSKAkrlkRVAELIKLVGLE------GKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:COG4178 438 plgTLREALLYPATAEAFSDA----ELREALEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEAT 513
|
170 180 190
....*....|....*....|....*....|..
gi 564752943 169 SALDPQTTDSILGLLsdiNERL-GLTIVLITH 199
Cdd:COG4178 514 SALDEENEAALYQLL---REELpGTTVISVGH 542
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-226 |
9.97e-23 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 94.95 E-value: 9.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnA 80
Cdd:PRK11614 5 MLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI--M 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSK-AKRLKRVAELIKLvgLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQfQERIKWVYELFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEE--GDVL 226
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEdtGDAL 224
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
24-224 |
3.19e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 97.61 E-value: 3.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPTSGTVEVAGRTISEIKgkkLRNARQEISMIFQHFNLLWSrTVRDNI 103
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELD---PESWRKHLSWVGQNPQLPHG-TLRDNV 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 104 AF---PLEIAGVSKAKRLKRVAELIKLV--GLEG--KENAypSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTT 176
Cdd:PRK11174 444 LLgnpDASDEQLQQALENAWVSEFLPLLpqGLDTpiGDQA--AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564752943 177 DSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGD 224
Cdd:PRK11174 522 QLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGD 566
|
|
| NIL |
smart00930 |
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine ... |
263-338 |
4.70e-22 |
|
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.
Pssm-ID: 197998 [Multi-domain] Cd Length: 76 Bit Score: 88.34 E-value: 4.70e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 263 SGRTIKLTFVGEAAESPLITQIIRKFDVEVNILQGKISQTQDGAYGSLFIHVDGYENEVNDVVDFIKSRQVEAEVI 338
Cdd:smart00930 1 DGRLVRLTFTGESADEPLISQLAREFGVDVNILHGNIERIQGGPFGSLVVELTGDEEDIEAALAYLREQGVEVEVL 76
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-218 |
6.45e-22 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 90.20 E-value: 6.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTiseikgkklrnar 81
Cdd:cd03221 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeismifqhfnllwsrtvrdniafpleiagvskakrlkrvaeliklvglegkENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:cd03221 64 ----------------------------------------------------KIGYFEQLSGGEKMRLALAKLLLENPNL 91
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDINerlGlTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:cd03221 92 LLLDEPTNHLDLESIEALEEALKEYP---G-TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-256 |
1.00e-21 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 95.57 E-value: 1.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSkhgdVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKK-LRNArq 82
Cdd:PRK10982 1 MSNISKSFPG----VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEaLENG-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 eISMIFQHFNLLWSRTVRDNI---AFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK10982 75 -ISMVHQELNLVLQRSVMDNMwlgRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLN------VFLKPQ 233
Cdd:PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGltmdkiIAMMVG 232
|
250 260
....*....|....*....|...
gi 564752943 234 EEMTKRFVQQVTEPVETQETLKH 256
Cdd:PRK10982 233 RSLTQRFPDKENKPGEVILEVRN 255
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
14-220 |
1.78e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 94.89 E-value: 1.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL--EQPTSGTVEVAGrtiSEIKGKKLRNA-RQEISMIFQH 90
Cdd:TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSG---SPLKASNIRDTeRAGIVIIHQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 91 FNLLWSRTVRDNIAFPLEI----AGVSKAKRLKRVAELIKLVGLEGKENAYP-SQLSGGQKQRVGIARALANNPKVLLCD 165
Cdd:TIGR02633 87 LTLVPELSVAENIFLGNEItlpgGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQARLLILD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 166 EATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVV 220
Cdd:TIGR02633 167 EPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-223 |
2.20e-21 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 94.78 E-value: 2.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRnar 81
Cdd:PRK10790 341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR--- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHFNLLwSRTVRDNIAFPLEI--AGVSKAKRLKRVAELIKLV--GLEGKENAYPSQLSGGQKQRVGIARALAN 157
Cdd:PRK10790 415 QGVAMVQQDPVVL-ADTFLANVTLGRDIseEQVWQALETVQLAELARSLpdGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERlgLTIVLITHEMHVIRKiCHRVAVMENGKVVEEG 223
Cdd:PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQG 556
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
16-218 |
2.38e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 94.61 E-value: 2.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPtSGTVEvaGRTISEIKGKKLRNARQE----ISMIFQHF 91
Cdd:PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YP-HGTYE--GEIIFEGEELQASNIRDTeragIAIIHQEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 92 NLLWSRTVRDNIAFPLEI--AGVSK-AKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:PRK13549 92 ALVKELSVLENIFLGNEItpGGIMDyDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564752943 169 SALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:PRK13549 172 ASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-224 |
3.83e-21 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 93.94 E-value: 3.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSkiYRSKHGdVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA--- 80
Cdd:COG3845 260 VENLS--VRDDRG-VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLgva 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 -----RQEISMI--FqhfnllwsrTVRDNIAF------PLEIAGVSKAKRLKRVAE-LIKlvglE-----GKENAYPSQL 141
Cdd:COG3845 337 yipedRLGRGLVpdM---------SVAENLILgryrrpPFSRGGFLDRKAIRAFAEeLIE----EfdvrtPGPDTPARSL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVE 221
Cdd:COG3845 404 SGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGRIVG 482
|
...
gi 564752943 222 EGD 224
Cdd:COG3845 483 EVP 485
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-207 |
9.64e-21 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 88.71 E-value: 9.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 22 QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseIKGKKLRNARQEIsmifqHFNLLW------ 95
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL--------WQGEPIRRQRDEY-----HQDLLYlghqpg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 ---SRTVRDNIAFPLEIAGVSKAKRLkrVAELIKlVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PRK13538 85 iktELTALENLRFYQRLHGPGDDEAL--WEALAQ-VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564752943 173 PQTTDSILGLLSDINERLGLtIVLITH-EMHVI----RKI 207
Cdd:PRK13538 162 KQGVARLEALLAQHAEQGGM-VILTTHqDLPVAsdkvRKL 200
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
22-199 |
9.95e-21 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 88.86 E-value: 9.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 22 QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLE--QPTSGTVEVAGRTISeikgkklrnarQEISMIfqhfnllwsrtv 99
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFG-----------REASLI------------ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 rDNIAfpleiagvsKAKRLKRVAELIKLVGLEgkeNAY-----PSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQ 174
Cdd:COG2401 104 -DAIG---------RKGDFKDAVELLNAVGLS---DAVlwlrrFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ 170
|
170 180
....*....|....*....|....*
gi 564752943 175 TTDSILGLLSDINERLGLTIVLITH 199
Cdd:COG2401 171 TAKRVARNLQKLARRAGITLVVATH 195
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
15-244 |
1.07e-20 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 90.05 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnARQeISMIFQHFNLL 94
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV--ARR-IGLLAQNATTP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSRTVRDNIA---FPLE-IAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Cdd:PRK10253 94 GDITVQELVArgrYPHQpLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 171 LDPQTTDSILGLLSDINERLGLTIVLITHEMH-VIRKICHRVAVMEnGKVVEEGdvlnvflKPQEEMTKRFVQQV 244
Cdd:PRK10253 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNqACRYASHLIALRE-GKIVAQG-------APKEIVTAELIERI 240
|
|
| NIL |
pfam09383 |
NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in ... |
267-337 |
1.59e-20 |
|
NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.
Pssm-ID: 462781 [Multi-domain] Cd Length: 73 Bit Score: 84.04 E-value: 1.59e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 267 IKLTFVGEAAESPLITQIIRKFDVEVNILQGKISQTQDGAYGSLFIHVDGYENEVNDVVDFIKSRQVEAEV 337
Cdd:pfam09383 3 VRLTFPGESADEPVISRLAREFGVDVNILYGNIEEIQGTPFGSLILELPGDPEQIEAALAYLREQGVEVEV 73
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
21-199 |
1.92e-20 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 86.82 E-value: 1.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseikgkklRNARQEISMIFQH--FNLLwsrT 98
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG--------------MPEGEDLLFLPQRpyLPLG---T 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 99 VRDNIAFPLEiagvskakrlkrvaeliklvglegkenaypSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDS 178
Cdd:cd03223 80 LREQLIYPWD------------------------------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
|
170 180
....*....|....*....|.
gi 564752943 179 ILGLLSDinerLGLTIVLITH 199
Cdd:cd03223 130 LYQLLKE----LGITVISVGH 146
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
24-207 |
2.67e-20 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 87.16 E-value: 2.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNArqeisMIFQHFNLLWSR-TVRDN 102
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL-----LYLGHAPGIKTTlSVLEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 103 IAFPLEIAGVSKakrlkrVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGL 182
Cdd:cd03231 94 LRFWHADHSDEQ------VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
|
170 180 190
....*....|....*....|....*....|
gi 564752943 183 LSDINERLGLtIVLITH-----EMHVIRKI 207
Cdd:cd03231 168 MAGHCARGGM-VVLTTHqdlglSEAGAREL 196
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
18-225 |
4.51e-20 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 90.83 E-value: 4.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeIKGKKlrnARQE--ISMIFQHFNLLW 95
Cdd:PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT-FNGPK---SSQEagIGIIHQELNLIP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAFPLEIA---GVSKAKRLKRVAE-LIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Cdd:PRK10762 93 QLTIAENIFLGREFVnrfGRIDWKKMYAEADkLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 172 DPQTTDSilgLLSDINE--RLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:PRK10762 173 TDTETES---LFRVIRElkSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
21-237 |
6.03e-20 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 87.59 E-value: 6.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPTSGTVEVAGRTISEIKGKKLrnARQEiSMIFQHFNLLWSRTVR 100
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWSAAEL--ARHR-AYLSQQQSPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFPLEiAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARAL-----ANNP--KVLLCDEATSALD- 172
Cdd:COG4138 88 QYLALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPegQLLLLDEPMNSLDv 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 173 --PQTTDSILGLLSDinerLGLTIVLITHEM-HVIRKiCHRVAVMENGKVVEEGdvlnvflKPQEEMT 237
Cdd:COG4138 167 aqQAALDRLLRELCQ----QGITVVMSSHDLnHTLRH-ADRVWLLKQGKLVASG-------ETAEVMT 222
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-204 |
1.09e-19 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 86.71 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseikgkklRNA 80
Cdd:PRK09544 4 LVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK--------------RNG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLlwsrtvrdNIAFPLEIA-------GVSKAK---RLKRV--AELIKlvglegkenaYPSQ-LSGGQKQ 147
Cdd:PRK09544 66 KLRIGYVPQKLYL--------DTTLPLTVNrflrlrpGTKKEDilpALKRVqaGHLID----------APMQkLSGGETQ 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVI 204
Cdd:PRK09544 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-217 |
1.10e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.46 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRSKHGDvnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNA 80
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL----TNISDV 2010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSkAKRLKRVAEL-IKLVGLEGKENAYPSQLSGGQKQRVGIARALANNP 159
Cdd:TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP-AEEIEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 160 KVLLCDEATSALDPQTT----DSILGLLsdineRLGLTIVLITHEMHVIRKICHRVAVMENG 217
Cdd:TIGR01257 2090 PLVLLDEPTTGMDPQARrmlwNTIVSII-----REGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
23-223 |
1.67e-19 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 89.34 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLI-----RLLNGLEqpTSGTVEVAGRTISEikgKKLRnarqEISMIFQHFNLLW-S 96
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMnalafRSPKGVK--GSGSVLLNGMPIDA---KEMR----AISAYVQQDDLFIpT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 97 RTVRDNIAFPLEI---AGVSKAKRLKRVAELIKLVGLE-------GKENAYPSqLSGGQKQRVGIARALANNPKVLLCDE 166
Cdd:TIGR00955 114 LTVREHLMFQAHLrmpRRVTKKEKRERVDEVLQALGLRkcantriGVPGRVKG-LSGGERKRLAFASELLTDPPLLFCDE 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 167 ATSALDPQTTDSILGLLSDINERlGLTIVLITHE-----MHVIRKIChrvaVMENGKVVEEG 223
Cdd:TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQpsselFELFDKII----LMAEGRVAYLG 249
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
15-224 |
4.39e-19 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 88.23 E-value: 4.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNARQEISMIFQHfNLL 94
Cdd:PRK10789 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---LDSWRSRLAVVSQT-PFL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSRTVRDNIAF------PLEIagvSKAKRLKRVAELI-KL-------VGLEGkenaypSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK10789 401 FSDTVANNIALgrpdatQQEI---EHVARLASVHDDIlRLpqgydteVGERG------VMLSGGQKQRISIARALLLNAE 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGD 224
Cdd:PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGN 532
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
2-267 |
8.45e-19 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 84.48 E-value: 8.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYR----------------SKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVA 65
Cdd:PRK13546 5 VNIKNVTKEYRiyrtnkermkdalipkHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 66 GrtiseikgkklrnarqEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQ 145
Cdd:PRK13546 85 G----------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGM 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 146 KQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:PRK13546 149 RAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGEL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564752943 226 LNVfLKPQEEMTKRFVQQvtepveTQETLKHFLEETTSGRTI 267
Cdd:PRK13546 228 DDV-LPKYEAFLNDFKKK------SKAEQKEFRNKLDESRFV 262
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
18-221 |
1.41e-18 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 86.38 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPT---SGTVEVAG-----RTI--SEIKGkklrnarqeISMI 87
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGV-YPHgsyEGEILFDGevcrfKDIrdSEALG---------IVII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 88 FQHFNLLWSRTVRDNIAFPLEIA--GV-SKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:NF040905 84 HQELALIPYLSIAENIFLGNERAkrGViDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLIL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVE 221
Cdd:NF040905 164 DEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
16-225 |
1.65e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 82.19 E-value: 1.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLE--QPTSGTVEVAGRTISEIKGKKlrNARQEISMIFQHfnl 93
Cdd:cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEE--RARLGIFLAFQY--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 lwsrtvrdniafPLEIAGVskakrlkRVAELIKLVGlEGkenaypsqLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Cdd:cd03217 86 ------------PPEIPGV-------KNADFLRYVN-EG--------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564752943 174 QTTDSILGLLSDINERlGLTIVLITHEMHVIRKI-CHRVAVMENGKVVEEGDV 225
Cdd:cd03217 138 DALRLVAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-205 |
1.92e-18 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 86.62 E-value: 1.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtiSEIKGKKLRNAR 81
Cdd:PTZ00265 383 IQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS--HNLKDINLKWWR 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVRDNIAFPL--------------EIAGVSKAKRLKRVAELIKLVG--------------LEGK 133
Cdd:PTZ00265 460 SKIGVVSQD-PLLFSNSIKNNIKYSLyslkdlealsnyynEDGNDSQENKNKRNSCRAKCAGdlndmsnttdsnelIEMR 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 134 EN-----------------------AYP-----------SQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSI 179
Cdd:PTZ00265 539 KNyqtikdsevvdvskkvlihdfvsALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618
|
250 260
....*....|....*....|....*.
gi 564752943 180 LGLLSDINERLGLTIVLITHEMHVIR 205
Cdd:PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTIR 644
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
22-199 |
4.42e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.46 E-value: 4.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 22 QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKL------RNARQEismifqhfNLlw 95
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAchylghRNAMKP--------AL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 srTVRDNIAFPLEIAGvskaKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQT 175
Cdd:PRK13539 89 --TVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
170 180
....*....|....*....|....
gi 564752943 176 TDSILGLLSDINERLGLtIVLITH 199
Cdd:PRK13539 163 VALFAELIRAHLAQGGI-VIAATH 185
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
10-242 |
4.70e-18 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 85.47 E-value: 4.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 10 IYRSKH-GDVNAVQDV------TLTIKKGEIFGIIGYSGAGKSSLIRllngleqPTSGTVEVAGRTISEIKGKKLRNArq 82
Cdd:PTZ00265 1227 VFKNEHtNDMTNEQDYqgdeeqNVGMKNVNEFSLTKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNL-- 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 eISMIFQHfNLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLV-GLEGKENA----YPSQLSGGQKQRVGIARALAN 157
Cdd:PTZ00265 1298 -FSIVSQE-PMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIeSLPNKYDTnvgpYGKSLSGGQKQRIAIARALLR 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 158 NPKVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMEN----GKVVEEGDVLNVFLKPQ 233
Cdd:PTZ00265 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNpdrtGSFVQAHGTHEELLSVQ 1454
|
....*....
gi 564752943 234 EEMTKRFVQ 242
Cdd:PTZ00265 1455 DGVYKKYVK 1463
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-222 |
5.61e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 84.67 E-value: 5.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKK-LRNARQEISMIFQHFNLLWSRTV 99
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDgLANGIVYISEDRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNIAFPLEIAGVSKAKRLKRVAE------LIKLVGLEGkenayPSQ------LSGGQKQRVGIARALANNPKVLLCDEA 167
Cdd:PRK10762 348 KENMSLTALRYFSRAGGSLKHADEqqavsdFIRLFNIKT-----PSMeqaiglLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 168 TSALDPQTTDSILGLlsdINE--RLGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:PRK10762 423 TRGVDVGAKKEIYQL---INQfkAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
24-244 |
1.87e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 80.36 E-value: 1.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPTSGTVEVAGRTISEIKGKKL--------RNARQEISM-IFQHFNLL 94
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELarhraylsQQQTPPFAMpVFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSrtvrdniafpleiAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARAL-----ANNP--KVLLCDEA 167
Cdd:PRK03695 94 QP-------------DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPagQLLLLDEP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 168 TSALD-PQTT--DSILGLLSdineRLGLTIVLITHEM-HVIRKiCHRVAVMENGKVVEEGdvlnvflKPQEEMTKRFVQQ 243
Cdd:PRK03695 161 MNSLDvAQQAalDRLLSELC----QQGIAVVMSSHDLnHTLRH-ADRVWLLKQGKLLASG-------RRDEVLTPENLAQ 228
|
.
gi 564752943 244 V 244
Cdd:PRK03695 229 V 229
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
22-222 |
2.27e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 82.65 E-value: 2.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 22 QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgkkLRNARQEISM-------------IF 88
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID------IRSPRDAIRAgimlcpedrkaegII 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 89 QHfnllwsRTVRDNIAfpleiagVSkAKRLKRVAELIKLVGLEgKENA----------YPS------QLSGGQKQRVGIA 152
Cdd:PRK11288 344 PV------HSVADNIN-------IS-ARRHHLRAGCLINNRWE-AENAdrfirslnikTPSreqlimNLSGGNQQKAILG 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 153 RALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:PRK11288 409 RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-229 |
4.88e-17 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 79.93 E-value: 4.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnar 81
Cdd:PRK15056 7 IVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qeISMIFQHFNLLWSrtvrdniaFPLEIAGV--------------SKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQ 147
Cdd:PRK15056 80 --VAYVPQSEEVDWS--------FPVLVEDVvmmgryghmgwlrrAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHrVAVMENGKVVEEGDVLN 227
Cdd:PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTET 227
|
..
gi 564752943 228 VF 229
Cdd:PRK15056 228 TF 229
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-173 |
5.89e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 82.09 E-value: 5.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklRNARQE 83
Cdd:NF033858 4 LEGVSHRY----GKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAD------ARHRRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 IS-----MIfQHF--NLLWSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLE-------GKenaypsqLSGGQKQRV 149
Cdd:NF033858 74 VCpriayMP-QGLgkNLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLApfadrpaGK-------LSGGMKQKL 145
|
170 180
....*....|....*....|....
gi 564752943 150 GIARALANNPKVLLCDEATSALDP 173
Cdd:NF033858 146 GLCCALIHDPDLLILDEPTTGVDP 169
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-223 |
6.33e-17 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 81.92 E-value: 6.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhgDVNAV-QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIkgkKLRNA 80
Cdd:TIGR00957 1285 VEFRNYCLRYRE---DLDLVlRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI---GLHDL 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHfNLLWSRTVRDNiafpLEIAGVSKAKRLKRVAELIKLVGL-------------EGKENaypsqLSGGQKQ 147
Cdd:TIGR00957 1359 RFKITIIPQD-PVLFSGSLRMN----LDPFSQYSDEEVWWALELAHLKTFvsalpdkldhecaEGGEN-----LSVGQRQ 1428
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 148 RVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlGLTIVLITHEMHVIRKIChRVAVMENGKVVEEG 223
Cdd:TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFG 1501
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-224 |
7.54e-17 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 81.75 E-value: 7.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVeVAGRTISEIKGKK-LRNArqeismifqhfnllwsrTV 99
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAwIMNA-----------------TV 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNIAF--PLEIAGVSKAKRLKRV-AELIKLV-GLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQT 175
Cdd:PTZ00243 738 RGNILFfdEEDAARLADAVRVSQLeADLAQLGgGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564752943 176 -----TDSILGLLSdinerlGLTIVLITHEMHVIRKICHRVAvMENGKVVEEGD 224
Cdd:PTZ00243 818 gervvEECFLGALA------GKTRVLATHQVHVVPRADYVVA-LGDGRVEFSGS 864
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
11-265 |
7.62e-17 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 81.48 E-value: 7.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 11 YRSKHGDVN-AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNARQEIsmifq 89
Cdd:PRK13545 29 FRSKDGEYHyALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGI----- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 hfnllwsrtvrDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:PRK13545 104 -----------ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 170 ALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNV------FLKPQEEMTKRFVQQ 243
Cdd:PRK13545 173 VGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVvdhydeFLKKYNQMSVEERKD 251
|
250 260
....*....|....*....|...
gi 564752943 244 VTEpvETQETLKH-FLEETTSGR 265
Cdd:PRK13545 252 FRE--EQISQFQHgLLQEDQTGR 272
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-221 |
8.71e-17 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 81.17 E-value: 8.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVN-AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgKKLRNA 80
Cdd:PRK10522 323 LELRNVTFAY----QDNGfSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA---EQPEDY 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNlLWSRTVRDNiAFPLEIAGVskAKRLKRVaELIKLVGLEGKENAYPsQLSGGQKQRVGIARALANNPK 160
Cdd:PRK10522 396 RKLFSAVFTDFH-LFDQLLGPE-GKPANPALV--EKWLERL-KMAHKLELEDGRISNL-KLSKGQKKRLALLLALAEERD 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 161 VLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKiCHRVAVMENGKVVE 221
Cdd:PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQLSE 529
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
23-228 |
8.97e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.87 E-value: 8.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKK--------LRNARQE----------- 83
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrlarglvyLPEDRQSsglyldaplaw 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 -ISMIFQHFNLLWSRTVRDNIAFpleiagvskaKRLKRvAELIKLVGLEGKENAypsqLSGGQKQRVGIARALANNPKVL 162
Cdd:PRK15439 361 nVCALTHNRRGFWIKPARENAVL----------ERYRR-ALNIKFNHAEQAART----LSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564752943 163 LCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEE--GDVLNV 228
Cdd:PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGAltGAAINV 492
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-221 |
1.57e-16 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 80.23 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVN-AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkKLRNA 80
Cdd:COG4615 328 LELRGVTYRYPGEDGDEGfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTA----DNREA 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 -RQEISMIFQHFNLlwsrtvrdniaFPlEIAGVSKAKRLKRVAELIKLVGLEGK---ENAYPS--QLSGGQKQRVGIARA 154
Cdd:COG4615 404 yRQLFSAVFSDFHL-----------FD-RLLGLDGEADPARARELLERLELDHKvsvEDGRFSttDLSQGQRKRLALLVA 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 155 LANNPKVLLCDEATSALDPQ------TTdsILGLLsdinERLGLTIVLITHEMH-------VIRkichrvavMENGKVVE 221
Cdd:COG4615 472 LLEDRPILVFDEWAADQDPEfrrvfyTE--LLPEL----KARGKTVIAISHDDRyfdladrVLK--------MDYGKLVE 537
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-220 |
5.66e-16 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 78.82 E-value: 5.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVaGRTIseikgkKLRNAR 81
Cdd:TIGR03719 323 IEAENLTKAF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV------KLAYVD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QeismifQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKRV---------AELIKLVGlegkenaypsQLSGGQKQRVGIA 152
Cdd:TIGR03719 392 Q------SRDALDPNKTVWEEISGGLDIIKLGKREIPSRAyvgrfnfkgSDQQKKVG----------QLSGGERNRVHLA 455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 153 RALANNPKVLLCDEATSALDPQTtdsiLGLLSDINERLGLTIVLITHEMHVIRKIC-HRVAVMENGKVV 220
Cdd:TIGR03719 456 KTLKSGGNVLLLDEPTNDLDVET----LRALEEALLNFAGCAVVISHDRWFLDRIAtHILAFEGDSHVE 520
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-221 |
1.00e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 78.63 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSK-----HGdvnavqdVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIkgkK 76
Cdd:PLN03130 1238 IKFEDVVLRYRPElppvlHG-------LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---G 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRNARQEISMIFQHfNLLWSRTVRDNIAFPLEIAGVSKAKRLKRvAELIKLV-----GL-----EGKENaypsqLSGGQK 146
Cdd:PLN03130 1308 LMDLRKVLGIIPQA-PVLFSGTVRFNLDPFNEHNDADLWESLER-AHLKDVIrrnslGLdaevsEAGEN-----FSVGQR 1380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 147 QRVGIARALANNPKVLLCDEATSALDPQtTDSILGllSDINERL-GLTIVLITHEMHVIRKiCHRVAVMENGKVVE 221
Cdd:PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVR-TDALIQ--KTIREEFkSCTMLIIAHRLNTIID-CDRILVLDAGRVVE 1452
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-233 |
7.53e-15 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 75.97 E-value: 7.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtisEIKGKKLRNARQEISMIFQHfNLLWSRTVRDNI 103
Cdd:PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR---EIGAYGLRELRRQFSMIPQD-PVLFDGTVRQNV 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 104 AFPLEI--AGVSKAKRL----KRVA---ELIKLVGLEGKENaypsqLSGGQKQRVGIARA-LANNPKVLLCDEATS---- 169
Cdd:PTZ00243 1405 DPFLEAssAEVWAALELvglrERVAsesEGIDSRVLEGGSN-----YSVGQRQLMCMARAlLKKGSGFILMDEATAnidp 1479
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 170 ALDPQTTDSILGLLSdinerlGLTIVLITHEMHVIRKiCHRVAVMENGKVVEEGDVLNVFLKPQ 233
Cdd:PTZ00243 1480 ALDRQIQATVMSAFS------AYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMNRQ 1536
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
17-202 |
3.45e-14 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 70.82 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 17 DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNA-RQEISMIFQHFNLLw 95
Cdd:cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnRYSVAYAAQKPWLL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 SRTVRDNIAF--PLeiagvsKAKRLKRVAELIKL--------VGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCD 165
Cdd:cd03290 92 NATVEENITFgsPF------NKQRYKAVTDACSLqpdidllpFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564752943 166 EATSALDPQTTD-----SILGLLSDiNERlglTIVLITHEMH 202
Cdd:cd03290 166 DPFSALDIHLSDhlmqeGILKFLQD-DKR---TLVLVTHKLQ 203
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-312 |
5.09e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 73.09 E-value: 5.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkklrnarqEISMIFqhfnllwSRTVR 100
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVP---------QVSWIF-------NATVR 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFPLEIAGvskakrlKRVAELIKLVGLEGKENAYPSQ-----------LSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:PLN03232 697 ENILFGSDFES-------ERYWRAIDVTALQHDLDLLPGRdlteigergvnISGGQKQRVSMARAVYSNSDIYIFDDPLS 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 170 ALDPQTTDSILGllSDINERL-GLTIVLITHEMHVIRKIcHRVAVMENGKVVEEGDVLNVFlkPQEEMTKRFVQQVTEPV 248
Cdd:PLN03232 770 ALDAHVAHQVFD--SCMKDELkGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELS--KSGSLFKKLMENAGKMD 844
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 249 ETQET---------LKHFLEETTSGRTIKLTFVGEAAESPLITQIIRkfdvEVNILQGKISQTQDGAYGSLFI 312
Cdd:PLN03232 845 ATQEVntndenilkLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEER----ETGIISWNVLMRYNKAVGGLWV 913
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
24-251 |
5.52e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 73.09 E-value: 5.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNARQEISMIFQHfNLLWSRTVRDNI 103
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG---LTDLRRVLSIIPQS-PVLFSGTVRFNI 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 104 AfPLE---IAGVSKAKRLKRVAELIKL--VGL-----EGKENaypsqLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Cdd:PLN03232 1331 D-PFSehnDADLWEALERAHIKDVIDRnpFGLdaevsEGGEN-----FSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 174 QtTDSILGllSDINERL-GLTIVLITHEMHVIRKiCHRVAVMENGKVVEegdvlnvFLKPQEEMTK------RFVQQvTE 246
Cdd:PLN03232 1405 R-TDSLIQ--RTIREEFkSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-------YDSPQELLSRdtsaffRMVHS-TG 1472
|
....*
gi 564752943 247 PVETQ 251
Cdd:PLN03232 1473 PANAQ 1477
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-172 |
6.08e-14 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 70.51 E-value: 6.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 27 TIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEikgkklrnARQEISMIFQhfnllwsRTVRDNIAFP 106
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY--------KPQYIKADYE-------GTVRDLLSSI 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 107 LEIAGVSKAKRlkrvAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:cd03237 86 TKDFYTHPYFK----TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
16-225 |
1.09e-13 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 69.67 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGleQP----TSGTVEVAGRTISEIKGKKlrNARQEISMIFQhf 91
Cdd:CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPaykiLEGDILFKGESILDLEPEE--RAHLGIFLAFQ-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 92 nllwsrtvrdniaFPLEIAGVS---------KAKR-------------LKRVAELIKLVGLEgkenayPSQL-------- 141
Cdd:CHL00131 92 -------------YPIEIPGVSnadflrlayNSKRkfqglpeldplefLEIINEKLKLVGMD------PSFLsrnvnegf 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 142 SGGQKQRVGIARALANNPKVLLCDEATSALDpqtTDSILGLLSDINERLGLT--IVLITHEMHVIRKIC-HRVAVMENGK 218
Cdd:CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLD---IDALKIIAEGINKLMTSEnsIILITHYQRLLDYIKpDYVHVMQNGK 229
|
....*..
gi 564752943 219 VVEEGDV 225
Cdd:CHL00131 230 IIKTGDA 236
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
23-223 |
1.11e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 72.08 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkklrnarqEISMIFqhfnllwSRTVRDN 102
Cdd:PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP---------QVSWIF-------NATVRDN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 103 IAF--PLEIAGVSKAKRLKRVAELIKL--------VGLEGkenaypSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PLN03130 699 ILFgsPFDPERYERAIDVTALQHDLDLlpggdlteIGERG------VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564752943 173 PQTTDSILGllSDINERL-GLTIVLITHEMHVIRKIcHRVAVMENGKVVEEG 223
Cdd:PLN03130 773 AHVGRQVFD--KCIKDELrGKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEG 821
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-220 |
1.19e-13 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 71.91 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNG-------------------LEQ--P-- 57
Cdd:PRK11147 3 LISIHGAWLSF----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGevllddgriiyeqdlivarLQQdpPrn 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 58 TSGTV---------EVAG---------RTISEIKGKKLRNARQEISMIFQHFNLlWSrtvrdniafpLEiagvskakrlK 119
Cdd:PRK11147 79 VEGTVydfvaegieEQAEylkryhdisHLVETDPSEKNLNELAKLQEQLDHHNL-WQ----------LE----------N 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 120 RVAELIKLVGLEGkeNAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINErlglTIVLITH 199
Cdd:PRK11147 138 RINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISH 211
|
250 260
....*....|....*....|.
gi 564752943 200 EMHVIRKICHRVAVMENGKVV 220
Cdd:PRK11147 212 DRSFIRNMATRIVDLDRGKLV 232
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
14-225 |
3.13e-13 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 69.76 E-value: 3.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KH-GDVNAVQDVTLTIKKGEIFGIIGYSGAG--KSSLIRLLNGleqPTSG-------TVEVAGRTISEIKG--KKLRNAR 81
Cdd:NF000106 21 KHfGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGrrpwrf*TWCANRRALRRTIG*hRPVR*GR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEismifqhfnllwSRTVRDNIAFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKV 161
Cdd:NF000106 98 RE------------SFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 162 LLCDEATSALDPQTTDSILGLLSDInERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDV 225
Cdd:NF000106 166 LYLDEPTTGLDPRTRNEVWDEVRSM-VRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKV 228
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-175 |
4.44e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 69.76 E-value: 4.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVaGRTIseikgkklrnar 81
Cdd:PRK11819 325 IEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV------------ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 qEISMIFQ-HFNLLWSRTVRDNIAFPLEIagvskakrlkrvaelIKLVGLEGKENAYPS--------------QLSGGQK 146
Cdd:PRK11819 388 -KLAYVDQsRDALDPNKTVWEEISGGLDI---------------IKVGNREIPSRAYVGrfnfkggdqqkkvgVLSGGER 451
|
170 180
....*....|....*....|....*....
gi 564752943 147 QRVGIARALANNPKVLLCDEATSALDPQT 175
Cdd:PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
1-210 |
6.55e-13 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 69.39 E-value: 6.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIyrSKHGDVnAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLeQPTSGtvevagrtiseikGKKLRNA 80
Cdd:TIGR00954 451 GIKFENIPLV--TPNGDV-LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYG-------------GRLTKPA 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQ--HFNLlwsRTVRDNIAFPLEI-----AGVSKaKRLKRVAELIKL-------VGLEGKENaYPSQLSGGQK 146
Cdd:TIGR00954 514 KGKLFYVPQrpYMTL---GTLRDQIIYPDSSedmkrRGLSD-KDLEQILDNVQLthilereGGWSAVQD-WMDVLSGGEK 588
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 147 QRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINerlgltIVLIThemhvirkICHR 210
Cdd:TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFG------ITLFS--------VSHR 638
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-219 |
1.05e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 68.60 E-value: 1.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 20 AVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTIseikgkKLRNARQEISMIFQ---------- 89
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI------NNHNANEAINHGFAlvteerrstg 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 -------HFNLLWSrtvrdNIAFPLEIAGVSKAKRLKRVAELIklvgLEGKENAYPSQ------LSGGQKQRVGIARALA 156
Cdd:PRK10982 337 iyayldiGFNSLIS-----NIRNYKNKVGLLDNSRMKSDTQWV----IDSMRVKTPGHrtqigsLSGGNQQKVIIGRWLL 407
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 157 NNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-200 |
1.28e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 65.74 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYRskhgDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeikgKKLRNA 80
Cdd:PRK13540 1 MLDVIELDFDYH----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK----KDLCTY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 RQEISMIFQHFNLLWSRTVRDNIAFPLEIAGVSKAkrlkrVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPK 160
Cdd:PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG-----ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564752943 161 VLLCDEATSALDPQttdSILGLLSDINE--RLGLTIVLITHE 200
Cdd:PRK13540 148 LWLLDEPLVALDEL---SLLTIITKIQEhrAKGGAVLLTSHQ 186
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
17-222 |
2.44e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 67.50 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 17 DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISE-------IKGKKLRNARQEISMIFQ 89
Cdd:PRK09700 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPrspldavKKGMAYITESRRDNGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFnllwsrTVRDNIAFP--LEIAG-------VSKAKRLKRVAELIKLVGLEGKE-NAYPSQLSGGQKQRVGIARALANNP 159
Cdd:PRK09700 355 NF------SIAQNMAISrsLKDGGykgamglFHEVDEQRTAENQRELLALKCHSvNQNITELSGGNQQKVLISKWLCCCP 428
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:PRK09700 429 EVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
21-227 |
2.92e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 67.26 E-value: 2.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQ-PTSGTVEVAGRTIseikgkKLRNARQEIS----MIFQ---HFN 92
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPV------KIRNPQQAIAqgiaMVPEdrkRDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 93 LLWSRTVRDNIAFPLeIAGVSKAKRLKRVAELiKLVGLEGKE----NAYP----SQLSGGQKQRVGIARALANNPKVLLC 164
Cdd:PRK13549 352 IVPVMGVGKNITLAA-LDRFTGGSRIDDAAEL-KTILESIQRlkvkTASPelaiARLSGGNQQKAVLAKCLLLNPKILIL 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 165 DEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVveEGDVLN 227
Cdd:PRK13549 430 DEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKL--KGDLIN 489
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
21-236 |
2.99e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 67.16 E-value: 2.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGL-EQPTSGTVEVAGRTIsEIKgKKLRNARQEISMI---FQHFNLLWS 96
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPV-DIR-NPAQAIRAGIAMVpedRKRHGIVPI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 97 RTVRDNIAFPL-----EIAGVSKAKRLKRVAELIKLVGLEGKENAYP-SQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Cdd:TIGR02633 354 LGVGKNITLSVlksfcFKMRIDAAAELQIIGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 171 LDPQTTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVveEGDVLNVFLKPQEEM 236
Cdd:TIGR02633 434 VDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL--KGDFVNHALTQEQVL 496
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
24-223 |
3.49e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 67.21 E-value: 3.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTS--GTVEVAGRTISEIKGKKLRNARQEiSMIFQHFnllwsrTVRD 101
Cdd:PLN03211 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQILKRTGFVTQD-DILYPHL------TVRE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 102 NIAFPLEI---AGVSKAKRLKRVAELIKLVGLEGKEN-----AYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Cdd:PLN03211 160 TLVFCSLLrlpKSLTKQEKILVAESVISELGLTKCENtiignSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564752943 174 QTTDSILGLLSDINERlGLTIVLITHE-MHVIRKICHRVAVMENGKVVEEG 223
Cdd:PLN03211 240 TAAYRLVLTLGSLAQK-GKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
21-179 |
9.18e-12 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 64.49 E-value: 9.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtiseikgkklrnarqeISMIFQhFNLLWSRTVR 100
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------------ISFSSQ-FSWIMPGTIK 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFpleiaGVSKAKRlkRVAELIKLVGLEGKENAYPSQ-----------LSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:cd03291 116 ENIIF-----GVSYDEY--RYKSVVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFG 188
|
170
....*....|
gi 564752943 170 ALDPQTTDSI 179
Cdd:cd03291 189 YLDVFTEKEI 198
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
19-219 |
9.65e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 64.49 E-value: 9.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 19 NAV-QDVTLTIKKGEIFGIIGYSGAGKSSL----IRLLNgleqpTSGTVEVAGRTISEIKGKKLRNArqeISMIFQHFnL 93
Cdd:cd03289 17 NAVlENISFSISPGQRVGLLGRTGSGKSTLlsafLRLLN-----TEGDIQIDGVSWNSVPLQKWRKA---FGVIPQKV-F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 94 LWSRTVRDNiafpLEIAGVSKAKRLKRVAELiklVGLEGKENAYPSQL-----------SGGQKQRVGIARALANNPKVL 162
Cdd:cd03289 88 IFSGTFRKN----LDPYGKWSDEEIWKVAEE---VGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLMCLARSVLSKAKIL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 163 LCDEATSALDPQTTDSILGLLSdiNERLGLTIVLITHEMHVIRKiCHRVAVMENGKV 219
Cdd:cd03289 161 LLDEPSAHLDPITYQVIRKTLK--QAFADCTVILSEHRIEAMLE-CQRFLVIEENKV 214
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
6-220 |
1.39e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.05 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 6 NVSKIYRSKHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPT---SGTVEVAGRTISEIKGKklrnARQ 82
Cdd:cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEK----YPG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQ---HFNLLwsrTVRDNIAFPLEIAGvskakrlkrvaeliklvglegkeNAYPSQLSGGQKQRVGIARALANNP 159
Cdd:cd03233 84 EIIYVSEedvHFPTL---TVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRA 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHV-IRKICHRVAVMENGKVV 220
Cdd:cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDeIYDLFDKVLVLYEGRQI 199
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
9-251 |
1.97e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 65.13 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 9 KIYRSKHGD-VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLL----NGLEQPTSGTVEVAGRTISEIK----GKKLRN 79
Cdd:TIGR00956 64 KLKKFRDTKtFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIasntDGFHIGVEGVITYDGITPEEIKkhyrGDVVYN 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 80 ARQEIsmifqHFNLLwsrTVRDNIAFP-------LEIAGVSKAKRLKRVAELI-KLVGLEGKENA-----YPSQLSGGQK 146
Cdd:TIGR00956 144 AETDV-----HFPHL---TVGETLDFAarcktpqNRPDGVSREEYAKHIADVYmATYGLSHTRNTkvgndFVRGVSGGER 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 147 QRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINERLGLT-IVLITHEMHVIRKICHRVAVMENGKVVEEGD- 224
Cdd:TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTpLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPa 295
|
250 260 270
....*....|....*....|....*....|....
gi 564752943 225 --VLNVFLK-----PQEEMTKRFVQQVTEPVETQ 251
Cdd:TIGR00956 296 dkAKQYFEKmgfkcPDRQTTADFLTSLTSPAERQ 329
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
21-232 |
2.25e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 63.31 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNG-LEQPT-------SGTVEVAGRTISEIKGKKLRNARqeiSMIFQHFN 92
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdLTGGGaprgarvTGDVTLNGEPLAAIDAPRLARLR---AVLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 93 LLWSRTVRDNIA---FPLEIAGVSKAKRLKRVA-ELIKLVGLEGKENAYPSQLSGGQKQRVGIARALAN---------NP 159
Cdd:PRK13547 94 PAFAFSAREIVLlgrYPHARRAGALTHRDGEIAwQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaqPP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLGLTIVLITHEMHVIRKICHRVAVMENGKVVEEGDVLNVfLKP 232
Cdd:PRK13547 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV-LTP 245
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-180 |
5.22e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.16 E-value: 5.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRtiseikgkklrnarqeISMIFQhFNLLWSRTVR 100
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------------ISFSPQ-TSWIMPGTIK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFpleiaGVSKAKRlkRVAELIKLVGLEGKENAYPSQ-----------LSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:TIGR01271 505 DNIIF-----GLSYDEY--RYTSVIKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFT 577
|
170
....*....|.
gi 564752943 170 ALDPQTTDSIL 180
Cdd:TIGR01271 578 HLDVVTEKEIF 588
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-231 |
6.70e-11 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 61.85 E-value: 6.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSKHGDVnaVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKgkkLRNAR 81
Cdd:cd03288 20 IKIHDLCVRYENNLKPV--LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP---LHTLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 82 QEISMIFQHfNLLWSRTVR-----------DNIAFPLEIAGVSKAkrLKRVAELIKLVGLEGKENaypsqLSGGQKQRVG 150
Cdd:cd03288 95 SRLSIILQD-PILFSGSIRfnldpeckctdDRLWEALEIAQLKNM--VKSLPGGLDAVVTEGGEN-----FSVGQRQLFC 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 151 IARALANNPKVLLCDEATSALDpQTTDSILG--LLSDINERlglTIVLITHEMHVIRKiCHRVAVMENGKVVEEGDVLNV 228
Cdd:cd03288 167 LARAFVRKSSILIMDEATASID-MATENILQkvVMTAFADR---TVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENL 241
|
...
gi 564752943 229 FLK 231
Cdd:cd03288 242 LAQ 244
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
26-223 |
1.07e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 62.34 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 26 LTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLrnaRQEISMIFQHFN--LL------WSR 97
Cdd:PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL---QKLVSDEWQRNNtdMLspgeddTGR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 98 TVRDNIafpleIAGVSKAKRLKRVAELIKLVGLEGKENAYpsqLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTD 177
Cdd:PRK10938 101 TTAEII-----QDEVKDPARCEQLAQQFGITALLDRRFKY---LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564752943 178 SILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGKVVEEG 223
Cdd:PRK10938 173 QLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETG 217
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-223 |
1.30e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.66 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIKGKKLRNArqeismifqhfnllw 95
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND--------------- 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 96 srTVRDNIAF--PLEiagvskAKRLKRVAELIKLVG----LEGKENAYPSQ----LSGGQKQRVGIARALANNPKVLLCD 165
Cdd:TIGR00957 714 --SLRENILFgkALN------EKYYQQVLEACALLPdleiLPSGDRTEIGEkgvnLSGGQKQRVSLARAVYSNADIYLFD 785
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 166 EATSALDPQTTDSIL-------GLLSdinerlGLTIVLITHEMHVIRKIcHRVAVMENGKVVEEG 223
Cdd:TIGR00957 786 DPLSAVDAHVGKHIFehvigpeGVLK------NKTRILVTHGISYLPQV-DVIIVMSGGKISEMG 843
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
24-183 |
1.46e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.43 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 24 VTLTIKKGEIFGIIGYSGAGKSSlirLLNGL-EQPTSGTVEVAGRTISeikGKKLRNARQEISMIFQHFNL-LWSRTVRD 101
Cdd:TIGR00956 782 VDGWVKPGTLTALMGASGAGKTT---LLNVLaERVTTGVITGGDRLVN---GRPLDSSFQRSIGYVQQQDLhLPTSTVRE 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 102 NI---AFPLEIAGVSKAKRLKRVAELIKLVGLEGKENAY----PSQLSGGQKQRVGIARALANNPKVLL-CDEATSALDP 173
Cdd:TIGR00956 856 SLrfsAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVvgvpGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDS 935
|
170
....*....|
gi 564752943 174 QTTDSILGLL 183
Cdd:TIGR00956 936 QTAWSICKLM 945
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
28-174 |
8.71e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.94 E-value: 8.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 28 IKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiseIKGKKLRNARQEISMIF-QHF-NLLWSRTVRDNIAF 105
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ--------IDGKTATRGDRSRFMAYlGHLpGLKADLSTLENLHF 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 106 PLEIAGvSKAKRLKRVAelIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQ 174
Cdd:PRK13543 106 LCGLHG-RRAKQMPGSA--LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-172 |
1.16e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 59.41 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 27 TIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAG---RTISEIKG-------KKLRNAR-------QEISMIFQ 89
Cdd:COG1245 95 VPKKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPswdEVLKRFRGtelqdyfKKLANGEikvahkpQYVDLIPK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFnllwSRTVRDNIafpleiagvSKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:COG1245 175 VF----KGTVRELL---------EKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSS 241
|
...
gi 564752943 170 ALD 172
Cdd:COG1245 242 YLD 244
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-200 |
1.97e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.79 E-value: 1.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYRSKHgdvNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAgrtiseiKGKKlrnarqe 83
Cdd:TIGR03719 7 MNRVSKVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQ-------PGIK------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNIafpleIAGVSKAKR-LKRV-----------AELIKLVGLEGK------------------ 133
Cdd:TIGR03719 70 VGYLPQEPQLDPTKTVRENV-----EEGVAEIKDaLDRFneisakyaepdADFDKLAAEQAElqeiidaadawdldsqle 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 134 ----------ENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDpqtTDSILGLLSDINERLGlTIVLITHE 200
Cdd:TIGR03719 145 iamdalrcppWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLERHLQEYPG-TVVAVTHD 217
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-172 |
2.35e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 58.64 E-value: 2.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 27 TIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEvagrtiSEIKgkklrnarqeISMIFQHFNLLWSRTVRDNIAFP 106
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD------EDLK----------ISYKPQYISPDYDGTVEEFLRSA 425
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564752943 107 L-EIAGVSKAKrlkrvAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:COG1245 426 NtDDFGSSYYK-----TEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-219 |
3.19e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 58.38 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 2 INLQNVSKIYRSkhgDVNAV-QDVTLTIKKGEIFGIIGYSGAGKSSLI----RLLNgleqpTSGTVEVAGRTISEIKGKK 76
Cdd:TIGR01271 1218 MDVQGLTAKYTE---AGRAVlQDLSFSVEGGQRVGLLGRTGSGKSTLLsallRLLS-----TEGEIQIDGVSWNSVTLQT 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 LRNArqeISMIFQHFnLLWSRTVRDNIAfPLEiagVSKAKRLKRVAELiklVGLEGKENAYPSQL-----------SGGQ 145
Cdd:TIGR01271 1290 WRKA---FGVIPQKV-FIFSGTFRKNLD-PYE---QWSDEEIWKVAEE---VGLKSVIEQFPDKLdfvlvdggyvlSNGH 1358
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 146 KQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSdiNERLGLTIVLITHEMHVIRKiCHRVAVMENGKV 219
Cdd:TIGR01271 1359 KQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK--QSFSNCTVILSEHRVEALLE-CQQFLVIEGSSV 1429
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-172 |
5.43e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 56.22 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 29 KKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGR---TISEIKG-------KKLRNARQEISMIFQHFNLLwSRT 98
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDwdeILDEFRGselqnyfTKLLEGDVKVIVKPQYVDLI-PKA 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 99 VRDNIAFPLEiagvsKAKRLKRVAELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:cd03236 103 VKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-172 |
5.54e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.51 E-value: 5.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 27 TIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAgRTIS----EIKGKKLRNARQEISMIFQHFNLLWSRTvrdN 102
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISykpqYIKPDYDGTVEDLLRSITDDLGSSYYKS---E 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564752943 103 IAFPLEIagvskaKRL--KRVAEliklvglegkenaypsqLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PRK13409 437 IIKPLQL------ERLldKNVKD-----------------LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
31-218 |
6.02e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.21 E-value: 6.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 31 GEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVevagrtiSEIKGKKLRNARQEiSMIFQHFNL----------LWS-RTV 99
Cdd:PRK15064 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-------SLDPNERLGKLRQD-QFAFEEFTVldtvimghteLWEvKQE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNI-AFP--LEIAGVsKAKRLK-------------RVAELIKLVGLEGKENAYP-SQLSGGQKQRVGIARALANNPKVL 162
Cdd:PRK15064 99 RDRIyALPemSEEDGM-KVADLEvkfaemdgytaeaRAGELLLGVGIPEEQHYGLmSEVAPGWKLRVLLAQALFSNPDIL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 163 LCDEATSALDpqtTDSILGLLSDINERlGLTIVLITHEMHVIRKICHRVAVMENGK 218
Cdd:PRK15064 178 LLDEPTNNLD---INTIRWLEDVLNER-NSTMIIISHDRHFLNSVCTHMADLDYGE 229
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-219 |
1.12e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 56.33 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 1 MINLQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAgrtiseiKGKKLRna 80
Cdd:PRK10636 312 LLKMEKVSAGY----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-------KGIKLG-- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 81 rqeismIFQHFNLLWSRTVRDNIAFPLEIAGVSKAKRLKrvaELIKLVGLEGKENAYPS-QLSGGQKQRVGIARALANNP 159
Cdd:PRK10636 379 ------YFAQHQLEFLRADESPLQHLARLAPQELEQKLR---DYLGGFGFQGDKVTEETrRFSGGEKARLVLALIVWQRP 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 160 KVLLCDEATSALDPQTTDSILGLLSDINERLgltiVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDFEGAL----VVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
21-172 |
1.45e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 56.39 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGleQPTSGTVEVAGRtISEIKGKKLRNARqeISMIFQHFNLLWSR-TV 99
Cdd:PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR-ISGFPKKQETFAR--ISGYCEQNDIHSPQvTV 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 100 RDNIAF------PLEiagVSKAKRLKRVAELIKLVGLEGKENA---YP--SQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Cdd:PLN03140 971 RESLIYsaflrlPKE---VSKEEKMMFVDEVMELVELDNLKDAivgLPgvTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047
|
....
gi 564752943 169 SALD 172
Cdd:PLN03140 1048 SGLD 1051
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-172 |
1.85e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 55.59 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 27 TIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEV-----------AGRTI----SEIKGKKLRNAR--QEISMIFQ 89
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEepswdevlkrfRGTELqnyfKKLYNGEIKVVHkpQYVDLIPK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 90 HFNllwsRTVRDniafplEIAGVSKAKRLKrvaELIKLVGLEGKENAYPSQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Cdd:PRK13409 175 VFK----GKVRE------LLKKVDERGKLD---EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
|
...
gi 564752943 170 ALD 172
Cdd:PRK13409 242 YLD 244
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
22-200 |
2.20e-08 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 53.40 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 22 QDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEqpTSGTVEvAGRTISeikGKKLRNARQEISMIFQHFNLLW-SRTVR 100
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK--TAGVIT-GEILIN---GRPLDKNFQRSTGYVEQQDVHSpNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 101 DNIAFpleiagvskakrlkrvaeliklvglegkeNAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSIL 180
Cdd:cd03232 98 EALRF-----------------------------SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148
|
170 180
....*....|....*....|
gi 564752943 181 GLLSDINERlGLTIVLITHE 200
Cdd:cd03232 149 RFLKKLADS-GQAILCTIHQ 167
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
36-219 |
2.71e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 55.25 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 36 IIGYSGAGKSSLIRLLNGLEQPTSGTVevagrtiseikgkkLRNARQEISMIFQH----FNLLWSRTVRDNIAFPleiaG 111
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTV--------------FRSAKVRMAVFSQHhvdgLDLSSNPLLYMMRCFP----G 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 112 VSKAKRLKRVAELiklvGLEGKENAYPS-QLSGGQKQRVGIARALANNPKVLLCDEATSALDpqtTDSILGLLSDINERL 190
Cdd:PLN03073 602 VPEQKLRAHLGSF----GVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDAVEALIQGLVLFQ 674
|
170 180
....*....|....*....|....*....
gi 564752943 191 GlTIVLITHEMHVIRKICHRVAVMENGKV 219
Cdd:PLN03073 675 G-GVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
18-205 |
3.92e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 52.33 E-value: 3.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLirLLNGLEQptsgtvEVAGRTISEIKgkklRNARQEISMIFQhfnllwsr 97
Cdd:cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYA------SGKARLISFLP----KFSRNKLIFIDQ-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 98 tvrdniafpleiagvskakrLKRvaeLIKlVGLEG-KENAYPSQLSGGQKQRVGIARALANNPK--VLLCDEATSALDPQ 174
Cdd:cd03238 68 --------------------LQF---LID-VGLGYlTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQ 123
|
170 180 190
....*....|....*....|....*....|.
gi 564752943 175 TTDSILGLLSDINErLGLTIVLITHEMHVIR 205
Cdd:cd03238 124 DINQLLEVIKGLID-LGNTVILIEHNLDVLS 153
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-206 |
5.83e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 5.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 30 KGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTV-EVAGRTISEIKGKKLRNARQEISmifqhfnllwsrtvrdniafple 108
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGViYIDGEDILEEVLDQLLLIIVGGK----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 109 iagvskakrlkrvaeliklvglegkenayPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSIL-----GLL 183
Cdd:smart00382 58 -----------------------------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLlleelRLL 108
|
170 180
....*....|....*....|...
gi 564752943 184 SDINERLGLTIVLITHEMHVIRK 206
Cdd:smart00382 109 LLLKSEKNLTVILTTNDEKDLGP 131
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
14-173 |
6.32e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 53.87 E-value: 6.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 14 KHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLE-QPTSGTVEVAGR------TISEIKgkklrnarQEISM 86
Cdd:PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHpQGYSNDLTLFGRrrgsgeTIWDIK--------KHIGY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 87 IFQHFNLLW--SRTVRDNIafpleIAG----------VSKAKRLKrVAELIKLVGLEGKENAYPSQ-LSGGQKQRVGIAR 153
Cdd:PRK10938 341 VSSSLHLDYrvSTSVRNVI-----LSGffdsigiyqaVSDRQQKL-AQQWLDILGIDKRTADAPFHsLSWGQQRLALIVR 414
|
170 180
....*....|....*....|
gi 564752943 154 ALANNPKVLLCDEATSALDP 173
Cdd:PRK10938 415 ALVKHPTLLILDEPLQGLDP 434
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
21-222 |
8.18e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 53.64 E-value: 8.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLE--QPTSGTVEVAGRTISeikgkkLRNARQEISMIF-------QHF 91
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSygRNISGTVFKDGKEVD------VSTVSDAIDAGLayvtedrKGY 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 92 NLLWSRTVRDNIAFPlEIAGVSKAKRLKRVAEL-----------IKLVGLEGKEnaypSQLSGGQKQRVGIARALANNPK 160
Cdd:NF040905 350 GLNLIDDIKRNITLA-NLGKVSRRGVIDENEEIkvaeeyrkkmnIKTPSVFQKV----GNLSGGNQQKVVLSKWLFTDPD 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564752943 161 VLLCDEATSALDPQTTDSILGLlsdINE--RLGLTIVLITHEMHVIRKICHRVAVMENGKVVEE 222
Cdd:NF040905 425 VLILDEPTRGIDVGAKYEIYTI---INElaAEGKGVIVISSELPELLGMCDRIYVMNEGRITGE 485
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
23-205 |
1.17e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.41 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 23 DVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISEIkgkklrnARQEISMIFQHFNLLWSRTVRDN 102
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-------AKPYCTYIGHNLGLKLEMTVFEN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 103 IAFPLEIagVSKAKRLKRVAELIKLVGLEGKENAypsQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGL 182
Cdd:PRK13541 91 LKFWSEI--YNSAETLYAAIHYFKLHDLLDEKCY---SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
170 180
....*....|....*....|...
gi 564752943 183 LSdINERLGLTIVLITHEMHVIR 205
Cdd:PRK13541 166 IV-MKANSGGIVLLSSHLESSIK 187
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
16-200 |
1.66e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 52.65 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 16 GDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVagrtiseikGKKLrnarqEISMIFQHFNLL- 94
Cdd:PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC---------GTKL-----EVAYFDQHRAELd 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 95 WSRTVRDNIAFPLEIAGVSKAKRL------------KRVAELIKlvglegkenaypsQLSGGQKQRVGIARALANNPKVL 162
Cdd:PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHvlgylqdflfhpKRAMTPVK-------------ALSGGERNRLLLARLFLKPSNLL 462
|
170 180 190
....*....|....*....|....*....|....*...
gi 564752943 163 LCDEATSALDPQTtdsiLGLLSDINERLGLTIVLITHE 200
Cdd:PRK11147 463 ILDEPTNDLDVET----LELLEELLDSYQGTVLLVSHD 496
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
28-233 |
2.02e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 50.26 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 28 IKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAGRTISeIKGKKLrnarqeismifqhfnllwsrtvrdniafpl 107
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQYI------------------------------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 108 eiagvskakrlkrvaeliklvglegkenaypsQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDIN 187
Cdd:cd03222 71 --------------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564752943 188 ERLGLTIVLITHEMHVIRKICHRVAVMENgkvveEGDVLNVFLKPQ 233
Cdd:cd03222 119 EEGKKTALVVEHDLAVLDYLSDRIHVFEG-----EPGVYGIASQPK 159
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
18-223 |
6.70e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 49.56 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 18 VNAVQDVTLTIKKGEIFGIIGYSGAGKSSLI---------------------RLLNGLEQPTSGTVEVAGRTISeIKGKK 76
Cdd:cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAfdtiyaegqrryveslsayarQFLGQMDKPDVDSIEGLSPAIA-IDQKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 77 L-RNARQ---EISMIFQHFNLLWSRtvrdniafpleiAGVSkakrlKRVAELIKlVGLE--GKENAYPSqLSGGQKQRVG 150
Cdd:cd03270 87 TsRNPRStvgTVTEIYDYLRLLFAR------------VGIR-----ERLGFLVD-VGLGylTLSRSAPT-LSGGEAQRIR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 151 IARALANNPKVLL--CDEATSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIRKICHRV-----AVMENGKVVEEG 223
Cdd:cd03270 148 LATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTIRAADHVIdigpgAGVHGGEIVAQG 226
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
26-224 |
2.15e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 48.25 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 26 LTIKKGEIFGIIGYSGAGKSSLIRLLNGLE--QPTSGTVEVAGRTISEIKGKKlrNARQEISMIFQhfnllwsrtvrdni 103
Cdd:PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPED--RAGEGIFMAFQ-------------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 104 aFPLEIAGVS---------KAKRLKR-------------VAELIKLVGLegkenayPSQL---------SGGQKQRVGIA 152
Cdd:PRK09580 86 -YPVEIPGVSnqfflqtalNAVRSYRgqepldrfdfqdlMEEKIALLKM-------PEDLltrsvnvgfSGGEKKRNDIL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564752943 153 RALANNPKVLLCDEATSALDpqtTDSILGLLSDINE-RLG-LTIVLITHEMHVIRKI-CHRVAVMENGKVVEEGD 224
Cdd:PRK09580 158 QMAVLEPELCILDESDSGLD---IDALKIVADGVNSlRDGkRSFIIVTHYQRILDYIkPDYVHVLYQGRIVKSGD 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
4-199 |
3.27e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 48.58 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 4 LQNVSKIYrskHGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTVEVAgrtiseiKGKKlrnarqe 83
Cdd:PRK11819 9 MNRVSKVV---PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA-------PGIK------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 84 ISMIFQHFNLLWSRTVRDNIafpleIAGVSKAK----RLKRVA-----------ELIKLVG-LEGK---ENAY------- 137
Cdd:PRK11819 72 VGYLPQEPQLDPEKTVRENV-----EEGVAEVKaaldRFNEIYaayaepdadfdALAAEQGeLQEIidaADAWdldsqle 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 138 --------P------SQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILGLLSDINerlGlTIVLITH 199
Cdd:PRK11819 147 iamdalrcPpwdakvTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTH 218
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
15-211 |
2.34e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.36 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 15 HGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLI---------RLLNGLEQPT----SGTVE--------VAGRT----- 68
Cdd:PRK00635 605 KATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIndtlvpaveEFIEQGFCSNlsiqWGAISrlvhitrdLPGRSqrsip 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 69 ---------ISEIKGKKLRNARQEISMIFQHFNL----------LWSRTVRDN---IAFPLeiagvSKAKRL-------- 118
Cdd:PRK00635 685 ltyikafddLRELFAEQPRSKRLGLTKSHFSFNTplgacaecqgLGSITTTDNrtsIPCPS-----CLGKRFlpqvlevr 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 119 ---KRVAELIKLVGLEGKE--------------------NAYP-----SQLSGGQKQRVGIARALAN---NPKVLLCDEA 167
Cdd:PRK00635 760 ykgKNIADILEMTAYEAEKffldepsihekihalcslglDYLPlgrplSSLSGGEIQRLKLAYELLApskKPTLYVLDEP 839
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 564752943 168 TSALDPQTTDSILGLLSDINErLGLTIVLITHEMHVIrKICHRV 211
Cdd:PRK00635 840 TTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-KVADYV 881
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
17-205 |
4.54e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 44.14 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 17 DVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIR--LLNGLEQPTSGTVEVAGRtISEIKG----KKLRNARQ-------- 82
Cdd:cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINdtLYPALARRLHLKKEQPGN-HDRIEGlehiDKVIVIDQspigrtpr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 -----------EISMIF------QHFN--LLWSRTVRDNIAFPLEIAgVSKAK-------RLKRVAELIKLVGLEGKENA 136
Cdd:cd03271 86 snpatytgvfdEIRELFcevckgKRYNreTLEVRYKGKSIADVLDMT-VEEALeffenipKIARKLQTLCDVGLGYIKLG 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564752943 137 YPS-QLSGGQKQRVGIARAL---ANNPKVLLCDEATSALDPQTTDSILGLLSDINERlGLTIVLITHEMHVIR 205
Cdd:cd03271 165 QPAtTLSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK 236
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
21-172 |
7.84e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.47 E-value: 7.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 21 VQDVTLTIKKGEIFGIIGYSGAGKSSLIRLL-----NGLeqPTSGTV-----EVAGRTI--------SEIKGKKLrnARQ 82
Cdd:PLN03073 193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMamhaiDGI--PKNCQIlhveqEVVGDDTtalqcvlnTDIERTQL--LEE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564752943 83 EISMIFQHFNLLWS-RTVRDNIAfplEIAGVSKAKRLKRVAELIK-----------------LVGLE---GKENAYPSQL 141
Cdd:PLN03073 269 EAQLVAQQRELEFEtETGKGKGA---NKDGVDKDAVSQRLEEIYKrlelidaytaearaasiLAGLSftpEMQVKATKTF 345
|
170 180 190
....*....|....*....|....*....|.
gi 564752943 142 SGGQKQRVGIARALANNPKVLLCDEATSALD 172
Cdd:PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
141-205 |
7.29e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.54 E-value: 7.29e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564752943 141 LSGGQKQRVGIARAL---ANNPKVLLCDEATSALDpqtTDSILGLLsDINERL---GLTIVLITHEMHVIR 205
Cdd:TIGR00630 830 LSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLH---FDDIKKLL-EVLQRLvdkGNTVVVIEHNLDVIK 896
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-62 |
8.63e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 41.03 E-value: 8.63e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 564752943 4 LQNVSKIYrskhGDVNAVQDVTLTIKKGEIFGIIGYSGAGKSSLIRLLNGLEQPTSGTV 62
Cdd:PRK15064 322 VENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
140-199 |
3.82e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 37.72 E-value: 3.82e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564752943 140 QLSGGQKQRVGIARALAN---NPKVLLC-DEATSALDPQTTDSILGLlsdINERL--GLTIVLITH 199
Cdd:cd03227 77 QLSGGEKELSALALILALaslKPRPLYIlDEIDRGLDPRDGQALAEA---ILEHLvkGAQVIVITH 139
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
30-67 |
6.39e-03 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 37.38 E-value: 6.39e-03
10 20 30
....*....|....*....|....*....|....*....
gi 564752943 30 KGEIFGIIGYSGAGKSSLI-RLLNGLEQPTSGTVEVAGR 67
Cdd:cd01854 84 KGKTSVLVGQSGVGKSTLLnALLPELVLATGEISEKLGR 122
|
|
| |
