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Conserved domains on  [gi|564975994|ref|WP_023875759|]
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MULTISPECIES: type II toxin-antitoxin system RelE/ParE family toxin [Pseudomonas]

Protein Classification

type II toxin-antitoxin system RelE/ParE family toxin( domain architecture ID 10008709)

type II toxin-antitoxin (TA) system RelE/ParE family toxin similar to Mycobacterium tuberculosis HigB2 and HigB3, putative toxin components of HigB-HigA TA modules

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4683 COG4683
Uncharacterized conserved protein [Function unknown];
1-116 1.07e-60

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443719  Cd Length: 119  Bit Score: 181.54  E-value: 1.07e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564975994   1 MAWDIEYTDEFGDWWGSLSEDEQESLAVTVRLLEERGPSLGHPHSSDINGSRHGHMRELRTQHGGRPFRTLYAFDPRRSA 80
Cdd:COG4683    1 MMWEVEFTDEFEEWFDALDEDVQEEVLAALLLLEEFGPQLGRPYVDTLKGSRHANMKELRVQSAGGPIRVFFAFDPRRQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564975994  81 ILPIGGDKTGDD-RWYELNVPIADRLYDEHLHQLREE 116
Cdd:COG4683   81 ILLVAGDKSGNEkRFYRQLIPIADRRFDEHLAELKKE 117
 
Name Accession Description Interval E-value
COG4683 COG4683
Uncharacterized conserved protein [Function unknown];
1-116 1.07e-60

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443719  Cd Length: 119  Bit Score: 181.54  E-value: 1.07e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564975994   1 MAWDIEYTDEFGDWWGSLSEDEQESLAVTVRLLEERGPSLGHPHSSDINGSRHGHMRELRTQHGGRPFRTLYAFDPRRSA 80
Cdd:COG4683    1 MMWEVEFTDEFEEWFDALDEDVQEEVLAALLLLEEFGPQLGRPYVDTLKGSRHANMKELRVQSAGGPIRVFFAFDPRRQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564975994  81 ILPIGGDKTGDD-RWYELNVPIADRLYDEHLHQLREE 116
Cdd:COG4683   81 ILLVAGDKSGNEkRFYRQLIPIADRRFDEHLAELKKE 117
Gp49 pfam05973
Phage derived protein Gp49-like (DUF891); This family consists of hypothetical bacterial ...
 13-107 8.93e-23

Phage derived protein Gp49-like (DUF891); This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.


Pssm-ID: 461791  Cd Length: 90  Bit Score: 84.56  E-value: 8.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564975994   13 DWWGSLSEDEQESLAVTVRLLEERGPSLGHPHSSDINGsrhgHMRELRTQHGGRPFRTLYAFDPRRSAILPIGGDKTGdD 92
Cdd:pfam05973   1 DELDALPDKVRAKFLAALDLLEEGGPDLGKPLVKKLGG----GLWELRVRDAGGIYRVLYAFDPGRAVYVLHAFQKKT-Q 75

                          90
                  ....*....|....*
gi 564975994   93 RWYELNVPIADRLYD 107
Cdd:pfam05973  76 KTPKKEIDLAERRLK 90
 
Name Accession Description Interval E-value
COG4683 COG4683
Uncharacterized conserved protein [Function unknown];
1-116 1.07e-60

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443719  Cd Length: 119  Bit Score: 181.54  E-value: 1.07e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564975994   1 MAWDIEYTDEFGDWWGSLSEDEQESLAVTVRLLEERGPSLGHPHSSDINGSRHGHMRELRTQHGGRPFRTLYAFDPRRSA 80
Cdd:COG4683    1 MMWEVEFTDEFEEWFDALDEDVQEEVLAALLLLEEFGPQLGRPYVDTLKGSRHANMKELRVQSAGGPIRVFFAFDPRRQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564975994  81 ILPIGGDKTGDD-RWYELNVPIADRLYDEHLHQLREE 116
Cdd:COG4683   81 ILLVAGDKSGNEkRFYRQLIPIADRRFDEHLAELKKE 117
Gp49 pfam05973
Phage derived protein Gp49-like (DUF891); This family consists of hypothetical bacterial ...
 13-107 8.93e-23

Phage derived protein Gp49-like (DUF891); This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.


Pssm-ID: 461791  Cd Length: 90  Bit Score: 84.56  E-value: 8.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564975994   13 DWWGSLSEDEQESLAVTVRLLEERGPSLGHPHSSDINGsrhgHMRELRTQHGGRPFRTLYAFDPRRSAILPIGGDKTGdD 92
Cdd:pfam05973   1 DELDALPDKVRAKFLAALDLLEEGGPDLGKPLVKKLGG----GLWELRVRDAGGIYRVLYAFDPGRAVYVLHAFQKKT-Q 75

                          90
                  ....*....|....*
gi 564975994   93 RWYELNVPIADRLYD 107
Cdd:pfam05973  76 KTPKKEIDLAERRLK 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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