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Conserved domains on  [gi|565114499|ref|WP_023887596|]
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MULTISPECIES: 30S ribosomal protein S7 [Eikenella]

Protein Classification

30S ribosomal protein S7( domain architecture ID 10792463)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Gene Symbol:  rpsG
Gene Ontology:  GO:0003735|GO:0015935|GO:0019843
PubMed:  11160889

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-157 6.05e-104

30S ribosomal protein S7; Validated


:

Pssm-ID: 235398  Cd Length: 156  Bit Score: 293.93  E-value: 6.05e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT-GKDPLEVFEKALENVKPVVEVKSRR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFRF 157
Cdd:PRK05302  80 VGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-157 6.05e-104

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 293.93  E-value: 6.05e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT-GKDPLEVFEKALENVKPVVEVKSRR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFRF 157
Cdd:PRK05302  80 VGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-157 9.26e-104

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 293.50  E-value: 9.26e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:COG0049    1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKT-GEDPLEVFEKALENVKPLVEVKSRR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFRF 157
Cdd:COG0049   80 VGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 12-150 1.07e-83

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 241.97  E-value: 1.07e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  12 VLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKvQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVE 91
Cdd:cd14869    1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKK-TGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVE 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 565114499  92 VRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANK 150
Cdd:cd14869   80 VRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-156 1.13e-76

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 224.87  E-value: 1.13e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499    3 RRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRRVG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKT-GEDPLEVFEQALENVKPLVEVKSRRVG 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 565114499   83 GANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFR 156
Cdd:TIGR01029  80 GATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-150 3.55e-76

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 222.64  E-value: 3.55e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   18 FGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKvQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRR 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK-TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 565114499   98 LALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANK 150
Cdd:pfam00177  80 VALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-157 6.05e-104

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 293.93  E-value: 6.05e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT-GKDPLEVFEKALENVKPVVEVKSRR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFRF 157
Cdd:PRK05302  80 VGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-157 9.26e-104

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 293.50  E-value: 9.26e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:COG0049    1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKT-GEDPLEVFEKALENVKPLVEVKSRR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFRF 157
Cdd:COG0049   80 VGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 12-150 1.07e-83

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 241.97  E-value: 1.07e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  12 VLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKvQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVE 91
Cdd:cd14869    1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKK-TGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVE 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 565114499  92 VRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANK 150
Cdd:cd14869   80 VRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-156 1.13e-76

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 224.87  E-value: 1.13e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499    3 RRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRRVG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKT-GEDPLEVFEQALENVKPLVEVKSRRVG 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 565114499   83 GANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFR 156
Cdd:TIGR01029  80 GATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-150 3.55e-76

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 222.64  E-value: 3.55e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   18 FGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKvQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRR 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK-TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 565114499   98 LALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANK 150
Cdd:pfam00177  80 VALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rps7 CHL00053
ribosomal protein S7
 1-156 5.16e-61

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 185.47  E-value: 5.16e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   1 MPRRREVPKRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVQgKEAIEVFNEAIDNAKPIVEVKSRR 80
Cdd:CHL00053   1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTE-KNPLSVLRQAIRNVTPDVEVKARR 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565114499  81 VGGANYQVPVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFR 156
Cdd:CHL00053  80 VGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-155 1.24e-57

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 176.31  E-value: 1.24e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499   9 KRDVLPDPKFGSVELTKFMNVLMVDGKKSVAERIVYGALEQIAKKVQgKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQV 88
Cdd:cd14871    1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTK-QDPLEVLEQAIRNVTPLVEVKARRVGGSTYQV 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565114499  89 PVEVRPSRRLALAMRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHF 155
Cdd:cd14871   80 PVEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 22-156 2.10e-44

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 144.69  E-value: 2.10e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  22 ELTKFMNVLMVDGKKSVAERIVYGALEQIaKKVQ----------GKEAIE-----VFNEAIDNAKPIVEVKSRRVGGANY 86
Cdd:cd14870   50 LVSKFINMMMKKGNKELAREIVEKTLENI-KRIQlekyhkatdeEKESIElnplvIFHKAVENCKPLLGLTSVKRGGKTY 128

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 565114499  87 QVPVEVRPSRRLALAMRWVRDAARKRGEK-SMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFR 156
Cdd:cd14870  129 QVPVPITPNRARFLAMKWLIEACREKKRKiRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 23-150 1.85e-42

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 137.39  E-value: 1.85e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  23 LTKFMNVLMVDGKKSVAERIVYGALEQIaKKVQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAM 102
Cdd:cd00323    4 LKKFINILMKDGKKSKAEKIFSKALKIL-KKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSLAI 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 565114499 103 RWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEANK 150
Cdd:cd00323   83 KWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 23-156 1.32e-34

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 117.87  E-value: 1.32e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  23 LTKFMNVLMVDGKKSVAERIVYGALEQIAKK--VQGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRRLAL 100
Cdd:cd15484    4 IKKFVNFLMKKGKKTKARTILFKTFHLLKQKqsAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQETL 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 565114499 101 AMRWVRDAARKRGEKSMDLR------LAGELIDAAEGRGGAMKKREEVHRMAEANKAFSHFR 156
Cdd:cd15484   84 AIRWILEAAKKKQRKQSKKRysfaycLADEILDASKKQGKARQKRDELHKLAEANRSLAHYR 145
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 23-149 1.88e-29

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 104.96  E-value: 1.88e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  23 LTKFMNVLMVDGKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPV--EVRPSRRLAL 100
Cdd:cd14868   25 LEQLTNLIMKHGKKAKAQRIVSRALLHIHTLT-RADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVplNERQRRRKAI 103

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 565114499 101 amRWVRDAARKRGEKSMDLRLAGELIDAAEGRGGAMKKREEVHRMAEAN 149
Cdd:cd14868  104 --KWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAVAN 150
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 34-150 1.77e-18

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 77.59  E-value: 1.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  34 GKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMRWVRDAARK-- 111
Cdd:cd14867   65 GKKLMAYRIVKHAFEIIHLLT-GKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREaa 143

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 565114499 112 -RGEKSMDLRLAGELIDAAEG--RGGAMKKREEVHRMAEANK 150
Cdd:cd14867  144 fRNIKSIAECLADELINAAKGssNSYAIKKKDELERVAKSNR 185
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 34-148 7.42e-18

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 76.09  E-value: 7.42e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  34 GKKSVAERIVYGALEQIAKKVqGKEAIEVFNEAIDNAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMRWVRDAARK-- 111
Cdd:PRK04027  75 GKKQKAYNIVKEAFEIIEKRT-KQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQas 153

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 565114499 112 -RGEKSMDLRLAGELIDAAEG--RGGAMKKREEVHRMAEA 148
Cdd:PRK04027 154 fKNKKSIEEALAEEIIAAANNdpKSYAVRKKEEIERVAKS 193
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 34-150 4.47e-10

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 55.54  E-value: 4.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565114499  34 GKKSVAERIVYGALEqIAKKVQGKEAIEVFNEAIDNAKPivEVKSRRVG--GANYQVPVEVRPSRRLALAMRWVRDAARK 111
Cdd:PTZ00091  73 GKKLLAVRIVKHAFE-IIHLLTDKNPLQVLVDAVQNGGP--REDSTRVGsgGVVRRQAVDVSPLRRVNQAIYLICKGARE 149

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 565114499 112 ---RGEKSMDLRLAGELIDAAEGRGG--AMKKREEVHRMAEANK 150
Cdd:PTZ00091 150 aafRNIKTIAECLADEIINASKESSNsyAIKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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