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Conserved domains on  [gi|565850445|ref|WP_023933125|]
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MULTISPECIES: flagellar biosynthesis protein FlhB [Photobacterium]

Protein Classification

flagellar type III secretion system protein FlhB( domain architecture ID 10012530)

flagellar type III secretion system protein FlhB may be involved in the export of flagellum proteins; belongs to the EscU/YscU/HrcU family of type III secretion system proteins

Gene Symbol:  flhB
Gene Ontology:  GO:0009306|GO:0044780|GO:0016020
PubMed:  32157081|26244937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-359 0e+00

flagellar type III secretion system protein FlhB;


:

Pssm-ID: 235569  Cd Length: 359  Bit Score: 540.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFV 80
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  81 IIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVA 160
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 161 CYLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEV 240
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 241 KGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLAR 320
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 565850445 321 AIYYTTELEQQIPDGLFVAVAQVLAYVFQLKEYRKGKGK 359
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-359 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 540.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFV 80
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  81 IIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVA 160
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 161 CYLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEV 240
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 241 KGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLAR 320
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 565850445 321 AIYYTTELEQQIPDGLFVAVAQVLAYVFQLKEYRKGKGK 359
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-351 7.76e-179

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 500.41  E-value: 7.76e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFV 80
Cdd:COG1377    1 MAEEDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  81 IIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVA 160
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 161 CYLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEV 240
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 241 KGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLAR 320
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|.
gi 565850445 321 AIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 8-347 6.27e-167

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 469.61  E-value: 6.27e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445    8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTRedIFDLDRLFVIIFDAIV 87
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDR--AADPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   88 HILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSS 167
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  168 LEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKGRIRML 247
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  248 QREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAIYYTTE 327
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 565850445  328 LEQQIPDGLFVAVAQVLAYV 347
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 8-354 7.10e-162

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 457.50  E-value: 7.10e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445    8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFVIIFDAIV 87
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   88 HILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSS 167
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  168 LEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKGRIRML 247
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  248 QREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAIYYTTE 327
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 565850445  328 LEQQIPDGLFVAVAQVLAYVFQLKEYR 354
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-359 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 540.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFV 80
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  81 IIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVA 160
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 161 CYLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEV 240
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 241 KGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLAR 320
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 565850445 321 AIYYTTELEQQIPDGLFVAVAQVLAYVFQLKEYRKGKGK 359
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-351 7.76e-179

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 500.41  E-value: 7.76e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFV 80
Cdd:COG1377    1 MAEEDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  81 IIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVA 160
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 161 CYLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEV 240
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 241 KGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLAR 320
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|.
gi 565850445 321 AIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 8-347 6.27e-167

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 469.61  E-value: 6.27e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445    8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTRedIFDLDRLFVIIFDAIV 87
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDR--AADPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   88 HILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSS 167
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  168 LEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKGRIRML 247
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  248 QREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAIYYTTE 327
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 565850445  328 LEQQIPDGLFVAVAQVLAYV 347
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 8-354 7.10e-162

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 457.50  E-value: 7.10e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445    8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFVIIFDAIV 87
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   88 HILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSS 167
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  168 LEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKGRIRML 247
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  248 QREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAIYYTTE 327
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 565850445  328 LEQQIPDGLFVAVAQVLAYVFQLKEYR 354
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 3-361 1.37e-101

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 305.42  E-value: 1.37e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   3 DSDgQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGaVGLMWF-GEGLSKALGQIMTAMFSLTREDIFDLDRLFVI 81
Cdd:PRK12468   4 DSD-QEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAG-LTILWMsGESMARQLSAMVAQGLHFDHSMVSNDKQMLRQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  82 IFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVAC 161
Cdd:PRK12468  82 IGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 162 YLIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVK 241
Cdd:PRK12468 162 LFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVK 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 242 GRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARA 321
Cdd:PRK12468 242 GRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARA 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 565850445 322 IYYTTELEQQIPDGLFVAVAQVLAYVFQLKEYRKGKG---KKP 361
Cdd:PRK12468 322 LFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGlipKKP 364
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 8-350 2.79e-89

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 272.54  E-value: 2.79e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDiFD--LDRLFVIIFDA 85
Cdd:COG4792    4 EKTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGDALVEHLQALILLPAQLLNLP-FDeaLNQLLGALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  86 IVHILLPLALVLIFlffAAFIGAAGVGGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIY 165
Cdd:COG4792   83 LLRLVLPLLAVLIL---ATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYYLLR 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 166 SSLEDFFQLSiEVFPANYFHALDILLNFVLLICCSLLIVVAI-DVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKGRI 244
Cdd:COG4792  160 GYLPTLVYLP-YCGLACAGPVVGALLKWLWGVLLGAYLVFGLaDYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQKR 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 245 RMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAIYY 324
Cdd:COG4792  239 RRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALYA 318

                        330       340
                 ....*....|....*....|....*.
gi 565850445 325 TTELEQQIPDGLFVAVAQVLAYVFQL 350
Cdd:COG4792  319 DAGLGEYIPEDLFEPVAEVLRLALLL 344
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
6-351 3.00e-89

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 280.80  E-value: 3.00e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   6 GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSLTREDIFDLDRLFVIIFDA 85
Cdd:PRK12772 262 SDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLNNYLNMNLNYNSLNSLAIIT 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  86 IVH---ILLPLALVLIFLFFAAFIgaAGVGGVrFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACY 162
Cdd:PRK12772 342 LLRvakIFLPVALPIMVFGVAANL--LQTGFL-FTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYK 418

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 163 LIYSSLEDFFQLSIEVFPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPEVKG 242
Cdd:PRK12772 419 FLQDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKA 498

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 243 RIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLARAI 322
Cdd:PRK12772 499 KIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLI 578

                        330       340
                 ....*....|....*....|....*....
gi 565850445 323 YYTTELEQQIPDGLFVAVAQVLAYVFQLK 351
Cdd:PRK12772 579 YKKVEIDQEIPQDMYQAVAEILAIVYKLK 607
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 1-348 1.96e-68

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 219.67  E-value: 1.96e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   1 MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAM------FSLTREDif 73
Cdd:PRK13109   1 MSDDTDKEsKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGQAAQLTGDLAPLlddprgFSLETGA-- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  74 DLDRLFVIIFDAIVHILLPLALVLiflffAAFIGAAGV--GGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSIL 151
Cdd:PRK13109  79 DAMLLLSRVALAAGRFLLPILLIL-----AVCGLAASLlqNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLF 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 152 KVgLVGSVACYLIYSSLEDffqlsiEVFPANYFHA-------LDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTK 224
Cdd:PRK13109 154 KF-LSVSVVVLLLLRSERA------KAVNAMFVDPsqlpeliLTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTK 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 225 QEIKDEYKDSEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREV 304
Cdd:PRK13109 227 QEIKDEHKQAEGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREI 306

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 565850445 305 ANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVF 348
Cdd:PRK13109 307 AEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFLF 350
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
8-350 1.63e-67

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 216.85  E-value: 1.63e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   8 ERTEDATPRRLEQAREKGQVPRSRELASvavLVSGAVGLMWF---GEGLSKALGQIMTAMFSLTREDI-FDLDRLFVIIF 83
Cdd:PRK12721   3 EKTEKPTEKKLRDARKKGQVVKSVEITS---GVQLAALLLYFlleGPSLVEAIIGLINSTIQLLNKPFlYALTQILGAVL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  84 DAIVHILLPLALVLIFLFFAAfiGAAGVGGVrFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYL 163
Cdd:PRK12721  80 EVLLRFLLVLGAGLIVATVGT--GIAQVGPL-LASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 164 IYSSLEDFFQLSIevfpANYFHALDILLNFVLLICCSLL---IVVAI-DVPFQIWNFNQQLKMTKQEIKDEYKDSEGKPE 239
Cdd:PRK12721 157 LHYYAPSFAYLPY----CGAACGLPVVSTLIFWLWGGLLacyLVFGIlDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPE 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 240 VKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLA 319
Cdd:PRK12721 233 IKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLA 312

                        330       340       350
                 ....*....|....*....|....*....|.
gi 565850445 320 RAIYYTTELEQQIPDGLFVAVAQVLAYVFQL 350
Cdd:PRK12721 313 RALFKEVECGDYIPETLFEPVAALLRMVMDI 343
PRK06298 PRK06298
type III secretion system protein; Validated
 8-351 1.23e-56

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 188.91  E-value: 1.23e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMFSL--TRED----IFDLDRLFVI 81
Cdd:PRK06298   3 EKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIFKTapTNHDpvvtVYYLKNCLIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  82 IFDAIVHILLPLALVLIFLFFAAfigaagVGGVrFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVglvgSVAC 161
Cdd:PRK06298  83 ILTASLPLLGAVAFVGVLVGFLI------VGPT-FSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKI----SGAA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 162 YLIYSSLEDFFQLSIE------VFPANYFHAldILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSE 235
Cdd:PRK06298 152 LILYIVLKNRVPLIIEtagvppLVTAQIFKE--ILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTE 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 236 GKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPA 315
Cdd:PRK06298 230 GNPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRN 309

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 565850445 316 APLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351
Cdd:PRK06298 310 VPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLN 345
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 4-356 8.87e-42

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 154.83  E-value: 8.87e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   4 SDGQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQIMTAMF-------SLTREDIFDLD 76
Cdd:PRK12773 295 AEDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIhgvglrtDMSSESVTELL 374

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  77 RLFVIIFDAIVHILLPLALVliflffAAFIGAAGVGGVRFSTQAAMPKFSKMNPiSGIKRMFGMQSWVELIKSILKVGLV 156
Cdd:PRK12773 375 KNASTDLFTLLWPLLGITLV------GAIIGNVAQVGFIFTPRALSFNFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLI 447

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 157 GSVAcYLIYSslEDFFQLSIEvFPANYFHALDILLN----FVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYK 232
Cdd:PRK12773 448 AWVS-YIIIS--KDFFPILLS-GEMGLEQAVALVMNssfkIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAK 523

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 233 DSEGKPEVKGRIRMLQREMA-QRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNID 311
Cdd:PRK12773 524 ESDGDRSLQARRRQLARDMMnKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVP 603

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 565850445 312 IVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAyvfQLKEYRKG 356
Cdd:PRK12773 604 TVEDRLQARGLYEEVELGAEVPQQFYRAIATILS---RLESFRRA 645
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
8-325 1.74e-40

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 146.31  E-value: 1.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445   8 ERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFG--EGLSKALGQIMTAMFSLTREDIFDLdrlFVIIFda 85
Cdd:PRK08156   3 NKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGsfSEFMSIYKRILADNFDINIGDYFLA---VMIIF-- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445  86 ivhillpLALVLIFLFFAAFIGAAGV---GGVRFSTQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGlVGSVACY 162
Cdd:PRK08156  78 -------LKILIPFLLLCLLAGALPTllqTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLI-VFALTAY 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 163 LIYSS-LEDFFQL---SIEVFPANYFHaldILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238
Cdd:PRK08156 150 VFWKNyKKEIFSQlngNIVGLIVIWRE---LLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNP 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPL 318
Cdd:PRK08156 227 EIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKL 306


                 ....*..
gi 565850445 319 ARAIYYT 325
Cdd:PRK08156 307 ARRLYKT 313
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 275-360 1.06e-18

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 80.23  E-value: 1.06e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565850445 275 VALRYDPKLDSAPVVIAKGGDHLALKIREVANKHNIDIVPAAPLArAIYYTTELEQQIPDGLFVAVAQVLAYVFQLKEyR 354
Cdd:COG2257   12 VALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELV-ELLSQLDLGDEIPPELYQAVAEILAFIYRLDG-K 89


                 ....*.
gi 565850445 355 KGKGKK 360
Cdd:COG2257   90 APEGKP 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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