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Conserved domains on  [gi|567929700|ref|WP_024032099|]
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MULTISPECIES: hypothetical protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ORF_2_N super family cl39819
Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open ...
 87-171 5.71e-13

Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.


The actual alignment was detected with superfamily member pfam18492:

Pssm-ID: 408285  Cd Length: 121  Bit Score: 62.04  E-value: 5.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929700   87 VTKGTLVRNVLTNNLTSLSGNITVLLKDGMNATEVAQLSGLKVvsVFPGTKIAVLAVNDGQDILAAAEQLKSSDYTKEAR 166
Cdd:pfam18492  34 LTAGDLLTNGSTGEPVTVTGRILVLLSDGVSAQALAQDFGLKL--VFQNGDIALLKAPAGTDLLALVDQLKQDGRVKSVK 111


                  ....*
gi 567929700  167 IEVLE 171
Cdd:pfam18492 112 LELVE 116
 
Name Accession Description Interval E-value
ORF_2_N pfam18492
Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open ...
 87-171 5.71e-13

Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.


Pssm-ID: 408285  Cd Length: 121  Bit Score: 62.04  E-value: 5.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929700   87 VTKGTLVRNVLTNNLTSLSGNITVLLKDGMNATEVAQLSGLKVvsVFPGTKIAVLAVNDGQDILAAAEQLKSSDYTKEAR 166
Cdd:pfam18492  34 LTAGDLLTNGSTGEPVTVTGRILVLLSDGVSAQALAQDFGLKL--VFQNGDIALLKAPAGTDLLALVDQLKQDGRVKSVK 111


                  ....*
gi 567929700  167 IEVLE 171
Cdd:pfam18492 112 LELVE 116
 
Name Accession Description Interval E-value
ORF_2_N pfam18492
Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open ...
 87-171 5.71e-13

Open reading frame 2 N-terminal domain; This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.


Pssm-ID: 408285  Cd Length: 121  Bit Score: 62.04  E-value: 5.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929700   87 VTKGTLVRNVLTNNLTSLSGNITVLLKDGMNATEVAQLSGLKVvsVFPGTKIAVLAVNDGQDILAAAEQLKSSDYTKEAR 166
Cdd:pfam18492  34 LTAGDLLTNGSTGEPVTVTGRILVLLSDGVSAQALAQDFGLKL--VFQNGDIALLKAPAGTDLLALVDQLKQDGRVKSVK 111


                  ....*
gi 567929700  167 IEVLE 171
Cdd:pfam18492 112 LELVE 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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