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Conserved domains on  [gi|567929703|ref|WP_024032102|]
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MULTISPECIES: cytochrome b/b6 domain-containing protein [Pseudoalteromonas]

Protein Classification

DUF4405 domain-containing protein; DUF4405 domain-containing protein; cytochrome b/b6 domain-containing protein( domain architecture ID 10007663)

DUF4405 domain-containing protein may belong to the cytochrome b/b561 family of heme-binding proteins; DUF4405 domain-containing protein may belong to the cytochrome b/b561 family of heme-binding proteins; uncharacterized cytochrome b/b6 domain-containing protein such as Salmonella enterica thiosulfate reductase cytochrome B subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytB COG3658
Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];
1-174 8.64e-57

Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];


:

Pssm-ID: 442875  Cd Length: 195  Bit Score: 178.53  E-value: 8.64e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   1 MQSIKVWDGFIRSFHWLLVINIAVLYFSIDEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSALLHSPIAVFKEFKN 80
Cdd:COG3658    5 MAKVRVWDLPVRLFHWLLAALFLGAWLTGEGEGMDWHVWLGYALLALLLFRLLWGFVGSRYARFSDFVPGPRAVLAYLRG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703  81 PIKG-----VGHSAPGSYMVLLFFVLIIVQLVTGLMSSDGiLTDGPLVEYVSSSTVDFANWLHRLNFDILFYAICLHVTA 155
Cdd:COG3658   85 LLRGrppryLGHNPLGALMVLALLLLLLLQALTGLFATDD-AFWGPLAGLVSSDTSEWLEELHELLANLLLALVALHVAA 163

                        170       180
                 ....*....|....*....|
gi 567929703 156 IVVYKI-KGKPLVKAMITGK 174
Cdd:COG3658  164 VLFYSLlHRENLVRAMITGR 183
 
Name Accession Description Interval E-value
CytB COG3658
Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];
1-174 8.64e-57

Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];


Pssm-ID: 442875  Cd Length: 195  Bit Score: 178.53  E-value: 8.64e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   1 MQSIKVWDGFIRSFHWLLVINIAVLYFSIDEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSALLHSPIAVFKEFKN 80
Cdd:COG3658    5 MAKVRVWDLPVRLFHWLLAALFLGAWLTGEGEGMDWHVWLGYALLALLLFRLLWGFVGSRYARFSDFVPGPRAVLAYLRG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703  81 PIKG-----VGHSAPGSYMVLLFFVLIIVQLVTGLMSSDGiLTDGPLVEYVSSSTVDFANWLHRLNFDILFYAICLHVTA 155
Cdd:COG3658   85 LLRGrppryLGHNPLGALMVLALLLLLLLQALTGLFATDD-AFWGPLAGLVSSDTSEWLEELHELLANLLLALVALHVAA 163

                        170       180
                 ....*....|....*....|
gi 567929703 156 IVVYKI-KGKPLVKAMITGK 174
Cdd:COG3658  164 VLFYSLlHRENLVRAMITGR 183
Ni_hydr_CYTB pfam01292
Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in ...
 6-173 6.57e-15

Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in Pfam: PF03188.


Pssm-ID: 426183  Cd Length: 180  Bit Score: 69.86  E-value: 6.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703    6 VWDGFIRSFHWLLVINIAVLYFS------------IDEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSALLHSPIA 73
Cdd:pfam01292   1 RYSLPVRLLHWLNALLVILLLLTglliafpeplalLGAAGRNLHKSLGLVLLALLLLRLLWRPKARFPRSDLLRFELLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   74 VFKEFKNPIKGVGHSAPG---SYMVLLFFVLIIVQLVTGLMSSDGILTDGPLveyVSSSTVDFANWLHRLNFDILFYAIC 150
Cdd:pfam01292  81 LYLLLRGPHPPPGKYNPGqklALVHLLLYLLLILLPLTGLLLYFPASASGFG---VDGGLAELARLLHELLAWALLALVV 157

                         170       180
                  ....*....|....*....|...
gi 567929703  151 LHVTAIVVYKIKGKPLVKAMITG 173
Cdd:pfam01292 158 LHIYAALFHHFRGKGTLKRMLTG 180
 
Name Accession Description Interval E-value
CytB COG3658
Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];
1-174 8.64e-57

Cytochrome b subunit of Ni2+-dependent hydrogenase [Energy production and conversion];


Pssm-ID: 442875  Cd Length: 195  Bit Score: 178.53  E-value: 8.64e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   1 MQSIKVWDGFIRSFHWLLVINIAVLYFSIDEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSALLHSPIAVFKEFKN 80
Cdd:COG3658    5 MAKVRVWDLPVRLFHWLLAALFLGAWLTGEGEGMDWHVWLGYALLALLLFRLLWGFVGSRYARFSDFVPGPRAVLAYLRG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703  81 PIKG-----VGHSAPGSYMVLLFFVLIIVQLVTGLMSSDGiLTDGPLVEYVSSSTVDFANWLHRLNFDILFYAICLHVTA 155
Cdd:COG3658   85 LLRGrppryLGHNPLGALMVLALLLLLLLQALTGLFATDD-AFWGPLAGLVSSDTSEWLEELHELLANLLLALVALHVAA 163

                        170       180
                 ....*....|....*....|
gi 567929703 156 IVVYKI-KGKPLVKAMITGK 174
Cdd:COG3658  164 VLFYSLlHRENLVRAMITGR 183
Ni_hydr_CYTB pfam01292
Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in ...
 6-173 6.57e-15

Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in Pfam: PF03188.


Pssm-ID: 426183  Cd Length: 180  Bit Score: 69.86  E-value: 6.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703    6 VWDGFIRSFHWLLVINIAVLYFS------------IDEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSALLHSPIA 73
Cdd:pfam01292   1 RYSLPVRLLHWLNALLVILLLLTglliafpeplalLGAAGRNLHKSLGLVLLALLLLRLLWRPKARFPRSDLLRFELLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   74 VFKEFKNPIKGVGHSAPG---SYMVLLFFVLIIVQLVTGLMSSDGILTDGPLveyVSSSTVDFANWLHRLNFDILFYAIC 150
Cdd:pfam01292  81 LYLLLRGPHPPPGKYNPGqklALVHLLLYLLLILLPLTGLLLYFPASASGFG---VDGGLAELARLLHELLAWALLALVV 157

                         170       180
                  ....*....|....*....|...
gi 567929703  151 LHVTAIVVYKIKGKPLVKAMITG 173
Cdd:pfam01292 158 LHIYAALFHHFRGKGTLKRMLTG 180
HyaC COG1969
Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion];
2-110 7.65e-09

Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion];


Pssm-ID: 441572  Cd Length: 228  Bit Score: 54.09  E-value: 7.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   2 QSIKVWDGFIRSFHWLLVINIAVL----------YFSIDEGMIE---------LHFVAGFFAIALIVTRLVWGLVGSKTA 62
Cdd:COG1969    9 KRVYVWEAPVRLWHWVNALCIVVLsvtgyyigspPPSPSGEASDhfvmgyirfIHFAAAYIFAVGFLGRLYWAFVGNRYA 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 567929703  63 KLSALLhsPIA-------VFKEFKN-------PIKGVGHSAPGSYMVLLFFVLIIVQLVTGL 110
Cdd:COG1969   89 RWLFFI--PLWnkkwwkeLWEELRWylflekePPKYVGHNPLAQLAYFGFFLLSLFMIVTGF 148
CybB COG3038
Cytochrome b561 [Energy production and conversion];
7-155 2.78e-03

Cytochrome b561 [Energy production and conversion];


Pssm-ID: 442272  Cd Length: 183  Bit Score: 37.14  E-value: 2.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703   7 WDGFIRSFHWLLVINIAVLYFSI------------DEGMIELHFVAGFFAIALIVTRLVWGLVGSKTAKLSAllHSPIAV 74
Cdd:COG3038   10 YGLVARALHWLMALLIIGLFALGllmvdlprgdplRLFLYSLHKSLGVLVLLLVLLRLLWRLTNPPPPLPPS--MPRWQR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567929703  75 FkefknpIKGVGHsapgsymvLLFFVLIIVQLVTG-LMSSD--------GILTDGPLVEyVSSSTVDFANWLHRLNFDIL 145
Cdd:COG3038   88 L------AAHLVH--------LLLYLLMLAVPLSGwLMSSAsgrpvslfGLFTLPALVP-KNEALADLAGELHELLAWLL 152

                        170
                 ....*....|
gi 567929703 146 FYAICLHVTA 155
Cdd:COG3038  153 LALIALHVAA 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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