|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
1-497 |
0e+00 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 1031.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 1 MAINAQEISALIKQQIENFQPNFDVTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFT 80
Cdd:PRK09281 1 MQINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVYGIALNLEEDNVGAVILGDYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 81 DIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIG 160
Cdd:PRK09281 81 DIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 161 RGQRELIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPY 240
Cdd:PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 241 AGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIE 320
Cdd:PRK09281 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 321 TQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGS 400
Cdd:PRK09281 321 TQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 401 DLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKD 480
Cdd:PRK09281 401 DLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADLLEEIRETKD 480
|
490
....*....|....*....
gi 568064195 481 LPEE--AVLDAAITEFINQ 497
Cdd:PRK09281 481 LSDEieAKLKAAIEEFKKT 499
|
|
| AtpA |
COG0056 |
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ... |
1-497 |
0e+00 |
|
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439826 [Multi-domain] Cd Length: 504 Bit Score: 1023.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 1 MAINAQEISALIKQQIENFQPNFDVTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFT 80
Cdd:COG0056 1 MQIRPEEISSIIKQQIENYDPEVEVEEVGTVLSVGDGIARVYGLPNAMAGELLEFPGGVYGMALNLEEDNVGVVLLGDYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 81 DIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIG 160
Cdd:COG0056 81 GIKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAEERRPVERPAPGVIDRQPVHEPLQTGIKAIDAMIPIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 161 RGQRELIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPY 240
Cdd:COG0056 161 RGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVETLEEHGAMEYTIVVAATASDPAPLQYIAPY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 241 AGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIE 320
Cdd:COG0056 241 AGCAMGEYFMDQGKDVLIVYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 321 TQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGS 400
Cdd:COG0056 321 TQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGLSVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 401 DLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKD 480
Cdd:COG0056 401 DLDEATRAQLERGERLVELLKQPQYSPLSVEEQVAILYAGTNGYLDDVPVEKVREFEKELLEYLRAKHPDLLKEIRETGK 480
|
490
....*....|....*....
gi 568064195 481 LPEE--AVLDAAITEFINQ 497
Cdd:COG0056 481 LDDEieEKLKAAIEEFKKT 499
|
|
| atpA |
TIGR00962 |
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ... |
2-495 |
0e+00 |
|
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273365 [Multi-domain] Cd Length: 501 Bit Score: 862.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 2 AINAQEISALIKQQIENFQPNFDVTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFTD 81
Cdd:TIGR00962 1 QLKLEEISELIKQEIKNFNVDSEAEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 82 IREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGR 161
Cdd:TIGR00962 81 IREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIGR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 162 GQRELIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYA 241
Cdd:TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQKDSDVYCIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 242 GVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIET 321
Cdd:TIGR00962 241 GCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIET 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 322 QAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSD 401
Cdd:TIGR00962 321 QAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 402 LDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKDL 481
Cdd:TIGR00962 401 LDEATKKQLERGQRVVELLKQPQYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFEQALLAYLDANHPDILEEINTTKKL 480
|
490
....*....|....*.
gi 568064195 482 PEEA--VLDAAITEFI 495
Cdd:TIGR00962 481 TEELeaKLKEALKNFK 496
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
1-494 |
0e+00 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 787.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 1 MAINAQEISALIKQQIENFQPNFDVTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFT 80
Cdd:PRK13343 1 MKSNADEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEGGSRGFAFNLEEELVGAVLLDDTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 81 DIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIG 160
Cdd:PRK13343 81 DILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 161 RGQRELIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPY 240
Cdd:PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 241 AGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIE 320
Cdd:PRK13343 241 AGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 321 TQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGS 400
Cdd:PRK13343 321 TLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 401 DLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKD 480
Cdd:PRK13343 401 LLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFAALSLALESPRE 480
|
490
....*....|....*.
gi 568064195 481 LPEE--AVLDAAITEF 494
Cdd:PRK13343 481 LDEAwlAALEEILREA 496
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
25-495 |
0e+00 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 750.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 25 VTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGKIMEVPVGDALI 104
Cdd:CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFEDGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 105 GRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSISIDAIL 184
Cdd:CHL00059 84 GRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 185 NQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLS 264
Cdd:CHL00059 164 NQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 265 KQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAYIATNVISITDGQIFL 344
Cdd:CHL00059 244 KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 345 SDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSDLDAATQAKLNRGRRTVEVLKQPV 424
Cdd:CHL00059 324 SADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQ 403
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064195 425 HEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKDLPEEA--VLDAAITEFI 495
Cdd:CHL00059 404 SAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAeaLLKEAIQEQL 476
|
|
| alt_F1F0_F1_al |
TIGR03324 |
alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic ... |
6-484 |
0e+00 |
|
alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Pssm-ID: 132367 [Multi-domain] Cd Length: 497 Bit Score: 603.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 6 QEISALIKQQIENFQPNFDVTETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFTDIREG 85
Cdd:TIGR03324 6 DKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 86 DTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRE 165
Cdd:TIGR03324 86 DEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 166 LIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAM 245
Cdd:TIGR03324 166 LILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 246 AEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGD 325
Cdd:TIGR03324 246 GEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQN 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 326 ISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSDLDAA 405
Cdd:TIGR03324 326 ISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGARLDEN 405
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064195 406 TQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDILHFQAELFDYFDAHHEDLYEIIRTTKDLPEE 484
Cdd:TIGR03324 406 TRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQSGKKLSDE 484
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
94-367 |
0e+00 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 559.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 94 IMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQT 173
Cdd:cd01132 1 IVEVPVGEALLGRVVDALGNPIDGKGPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 174 GKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNG 253
Cdd:cd01132 81 GKTAIAIDTIINQKGKKVYCIYVAIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 254 KHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAYIATN 333
Cdd:cd01132 161 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTN 240
|
250 260 270
....*....|....*....|....*....|....
gi 568064195 334 VISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVG 367
Cdd:cd01132 241 VISITDGQIFLESELFNKGIRPAINVGLSVSRVG 274
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
61-469 |
7.49e-119 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 360.89 E-value: 7.49e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 61 GMAQNLESTD-VGIIILGDFTDIREGDTIRRTGKIMEVPVGDALIGRVVDPLGR--PVDGLGE----IKTDKTR-PVETP 132
Cdd:PTZ00185 80 GLVFNLEKDGrIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHevPVGLLTRsralLESEQTLgKVDAG 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 133 APGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSISIDAILNQ--------KGQDMICIYVAIGQKEST 204
Cdd:PTZ00185 160 APNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQvrinqqilSKNAVISIYVSIGQRCSN 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 205 VRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGRE 284
Cdd:PTZ00185 240 VARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGRE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 285 AFPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVS 364
Cdd:PTZ00185 320 AYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVS 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 365 RVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSDLDAatqAKLNRGRRTVEVLKQpvHEPLPVEKQVVILYALTHGF 444
Cdd:PTZ00185 400 RVGSSAQNVAMKAVAGKLKGILAEYRKLAADSVGGSQVQT---VPMIRGARFVALFNQ--KNPSFFMNALVSLYACLNGY 474
|
410 420
....*....|....*....|....*
gi 568064195 445 LDSVPVDdilhfQAELFDYFDAHHE 469
Cdd:PTZ00185 475 LDDVKVN-----YAKLYEYLLVNKD 494
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
149-364 |
1.92e-109 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 323.54 E-value: 1.92e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 149 GLKAIDALVPIGRGQRELIIGDRQTGKTSIsIDAILNQKGQDmICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASA 228
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVL-AGMIARQASAD-VVVYALIGERGREVREFIEELLGSGALKRTVVVVATS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 229 SQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDEl 308
Cdd:pfam00006 79 DEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGK- 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064195 309 gGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVS 364
Cdd:pfam00006 158 -GGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
133-484 |
1.59e-104 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 321.54 E-value: 1.59e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 133 APGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETL 212
Cdd:PRK07165 114 AHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKCIYVAIGQKRENLSRIYETL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 213 RQYGALDYTIVVTASASQPSPlLFLAPYAGVAMAEEFMYNgKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFY 292
Cdd:PRK07165 194 KEHDALKNTIIIDAPSTSPYE-QYLAPYVAMAHAENISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 293 LHSRLLERSAKVsdeLGGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQI 372
Cdd:PRK07165 272 AHSKLLERAGKF---KNRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQS 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 373 KAMKKVAGTLRIDLASYRELEAFTKFGSDLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVP-VD 451
Cdd:PRK07165 349 KTITKVAGEISKIYRAYKRQLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKdEQ 428
|
330 340 350
....*....|....*....|....*....|...
gi 568064195 452 DILHFQAELFDYfDAHHEDLYEIIRTTKDLPEE 484
Cdd:PRK07165 429 KALDFIDYLIEN-DPDAKKIFNKIKNNEDVDDE 460
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
97-366 |
3.07e-103 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 310.16 E-value: 3.07e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 97 VPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKT 176
Cdd:cd19476 2 VPVGPELLGRILDGLGEPLDGLPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 177 SISIDAILNQKGQD-MICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKH 255
Cdd:cd19476 82 VLAMQLARNQAKAHaGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 256 VLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelGGGSITALPFIETQAGDISAYIATNVI 335
Cdd:cd19476 162 VLLIIDDISRYAEALREMSALLGEPPGREGYPPYLFTKLATLYERAGKVKD--GGGSITAIPAVSTPGDDLTDPIPDNTF 239
|
250 260 270
....*....|....*....|....*....|.
gi 568064195 336 SITDGQIFLSDSLFNAGVRPAIDAGSSVSRV 366
Cdd:cd19476 240 AILDGQIVLSRELARKGIYPAINVLDSTSRV 270
|
|
| ATP-synt_ab_C |
pfam00306 |
ATP synthase alpha/beta chain, C terminal domain; |
371-494 |
8.16e-65 |
|
ATP synthase alpha/beta chain, C terminal domain;
Pssm-ID: 425595 [Multi-domain] Cd Length: 126 Bit Score: 205.75 E-value: 8.16e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 371 QIKAMKKVAGTLRIDLASYRELEAFTKFGSDLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPV 450
Cdd:pfam00306 1 QTKAMKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKAQLDRGERLVELLKQPQYSPLSVEEQVIILYAATNGLLDDIPV 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568064195 451 DDILHFQAELFDYFDAHHEDLYEIIRTTKDLPEE--AVLDAAITEF 494
Cdd:pfam00306 81 EKVKEFEKELLEYLRSNHPEILEEIEETKKLSDEleEKLKEAIEEF 126
|
|
| ATP-synt_F1_alpha_C |
cd18113 |
F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex ... |
375-497 |
6.99e-64 |
|
F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex of F0F1-ATP synthase, C-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Pssm-ID: 349748 [Multi-domain] Cd Length: 126 Bit Score: 203.37 E-value: 6.99e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 375 MKKVAGTLRIDLASYRELEAFTKFGSDLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALTHGFLDSVPVDDIL 454
Cdd:cd18113 1 MKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKKQLERGERLTELLKQPQYSPLSVEEQVAILYAATNGYLDDIPVEKIK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568064195 455 HFQAELFDYFDAHHEDLYEIIRTTKDLPEE--AVLDAAITEFINQ 497
Cdd:cd18113 81 EFEKELLEYLRSNHPDLLEEIEKTKKLSDEleEKLKEAIEEFKKS 125
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
96-366 |
1.29e-56 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 189.31 E-value: 1.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 96 EVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGK 175
Cdd:cd01136 1 SIPVGDGLLGRVIDALGEPLDGKGLPDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 176 TSIsIDAILNQKGQDMICIyVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKH 255
Cdd:cd01136 81 STL-LGMIARNTDADVNVI-ALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 256 VLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKvSDElggGSITALPFIETQAGDISAYIATNVI 335
Cdd:cd01136 159 VLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFALLPRLLERAGN-GEK---GSITAFYTVLVEGDDFNDPIADEVR 234
|
250 260 270
....*....|....*....|....*....|.
gi 568064195 336 SITDGQIFLSDSLFNAGVRPAIDAGSSVSRV 366
Cdd:cd01136 235 SILDGHIVLSRRLAERGHYPAIDVLASISRV 265
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
76-431 |
1.80e-53 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 186.00 E-value: 1.80e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 76 LGDFTDIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDA 155
Cdd:COG1157 71 LGDLEGISPGARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDG 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 156 LVPIGRGQReliIGdr---qtGKTSisidaILNqkgqdMIC-------IYVA-IGQKESTVRTQVETLRQYGALDYTIVV 224
Cdd:COG1157 151 LLTVGRGQR---IGifagsgvGKST-----LLG-----MIArnteadvNVIAlIGERGREVREFIEDDLGEEGLARSVVV 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 225 TASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKV 304
Cdd:COG1157 218 VATSDEPPLMRLRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRLLERAGNG 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 305 sdelGGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRI 384
Cdd:COG1157 298 ----GKGSITAFYTVLVEGDDMNDPIADAVRGILDGHIVLSRKLAERGHYPAIDVLASISRVMPDIVSPEHRALARRLRR 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064195 385 DLASYRELE------AFTKfGSD--LDAATQA--KLNrgrrtvEVLKQPVHEPLPVE 431
Cdd:COG1157 374 LLARYEENEdlirigAYQP-GSDpeLDEAIALipAIE------AFLRQGMDERVSFE 423
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
4-440 |
2.78e-52 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 183.09 E-value: 2.78e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 4 NAQEISALIKQQIE-NFQPNFDVTETGVVTYIGDGIARAhGLDNAMSGELLIFENgsygmaQNLESTDVGI----IILGD 78
Cdd:PRK06820 5 DIARLTPRLQQQLTrPSAPPEGLRYRGPIVEIGPTLLRA-SLPGVAQGELCRIEP------QGMLAEVVSIeqemALLSP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 79 FTD---IREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGlGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDA 155
Cdd:PRK06820 78 FASsdgLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 156 LVPIGRGQRELIIGDRQTGKTSIsIDAILNQKGQDMIcIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLL 235
Cdd:PRK06820 157 ILSCGEGQRIGIFAAAGVGKSTL-LGMLCADSAADVM-VLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALER 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 236 FLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKvSDElggGSITA 315
Cdd:PRK06820 235 LKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGN-SDR---GSITA 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 316 LPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAF 395
Cdd:PRK06820 311 FYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELL 390
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568064195 396 TKFG---SDLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYAL 440
Cdd:PRK06820 391 VRVGeyqAGEDLQADEALQRYPAICAFLQQDHSETAHLETTLEHLAQV 438
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
74-443 |
1.77e-51 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 181.07 E-value: 1.77e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 74 IILGDFTDIRE---GDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGL 150
Cdd:PRK07721 67 VLLMPYTEVAEiapGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 151 KAIDALVPIGRGQRELIIGDRQTGKTSIsIDAILNQKGQDMICIYVaIGQKESTVRTQVEtlRQYGA--LDYTIVVTASA 228
Cdd:PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSADLNVIAL-IGERGREVREFIE--RDLGPegLKRSIVVVATS 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 229 SQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAkvSDEL 308
Cdd:PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG--TNAS 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 309 ggGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLAS 388
Cdd:PRK07721 301 --GSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLST 378
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568064195 389 YRELEAFTKFGS-------DLDAATQAKlnrgRRTVEVLKQPVHEPLPVEKQVVILYALTHG 443
Cdd:PRK07721 379 YQNSEDLINIGAykrgssrEIDEAIQFY----PQIISFLKQGTDEKATFEESIQALLSLFGK 436
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
76-441 |
3.07e-51 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 180.33 E-value: 3.07e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 76 LGDFTDIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDA 155
Cdd:PRK06936 76 LGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDG 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 156 LVPIGRGQRELIIGDRQTGKTSISIDAIlnqKGQDM-ICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPL 234
Cdd:PRK06936 156 LLTCGEGQRMGIFAAAGGGKSTLLASLI---RSAEVdVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSME 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 235 LFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERsAKVSDElggGSIT 314
Cdd:PRK06936 233 RAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMER-AGQSDK---GSIT 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 315 ALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEA 394
Cdd:PRK06936 309 ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVEL 388
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568064195 395 FTKFGS---DLDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALT 441
Cdd:PRK06936 389 LLQIGEyqkGQDKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETLT 438
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
25-441 |
1.26e-47 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 170.72 E-value: 1.26e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 25 VTETGVVTYIGDGIARAHGLDNAMsGELLIFENGSYGMAQNLE----STDVGIII-LGDFTDIREGDTIRRTGKIMEVPV 99
Cdd:PRK09099 22 VRRTGKVVEVIGTLLRVSGLDVTL-GELCELRQRDGTLLQRAEvvgfSRDVALLSpFGELGGLSRGTRVIGLGRPLSVPV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 100 GDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSIS 179
Cdd:PRK09099 101 GPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 180 idAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIV 259
Cdd:PRK09099 181 --GMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLM 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 260 YDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelggGSITALPFIETQAGDISAYIATNVISITD 339
Cdd:PRK09099 259 MDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGET----GSITALYTVLAEDESGSDPIAEEVRGILD 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 340 GQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFG---SDLDAATQAKLNRGRRT 416
Cdd:PRK09099 335 GHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGeyrAGSDPVADEAIAKIDAI 414
|
410 420
....*....|....*....|....*
gi 568064195 417 VEVLKQPVHEPLPVEKQVVILYALT 441
Cdd:PRK09099 415 RDFLSQRTDEYSDPDATLAALAELS 439
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
88-441 |
1.50e-43 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 159.39 E-value: 1.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 88 IRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKT----RPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQ 163
Cdd:PRK08149 73 LKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPiseeRVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 164 RELIIGDRQTGKTSIsIDAILNQKGQDmicIYVA--IGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYA 241
Cdd:PRK08149 153 RMGIFASAGCGKTSL-MNMLIEHSEAD---VFVIglIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALV 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 242 GVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKvsdeLGGGSITALPFIET 321
Cdd:PRK08149 229 ATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGA----TLAGSITAFYTVLL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 322 QAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFG-- 399
Cdd:PRK08149 305 ESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGey 384
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568064195 400 -----SDLDAAtqakLNRGRRTVEVLKQPVHEPLPVEKQVVILYALT 441
Cdd:PRK08149 385 rrgenADNDRA----MDKRPALEAFLKQDVAEKSSFSDTLERLNEFA 427
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
28-431 |
8.82e-43 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 157.42 E-value: 8.82e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 28 TGVVTYIGDGIARAHgLDNAMSGELL-IFENGSYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGKIMEVPVGDALIGR 106
Cdd:PRK07594 22 WGRIQDVSATLLNAW-LPGVFMGELCcIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 107 VVDPLGRPVDGLgEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSIsIDAILNQ 186
Cdd:PRK07594 101 VIDGFGRPLDGR-ELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL-LAMLCNA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 187 KGQDmICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQ 266
Cdd:PRK07594 179 PDAD-SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 267 AVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelggGSITALPFIETQAGDISAYIATNVISITDGQIFLSD 346
Cdd:PRK07594 258 ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK----GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 347 SLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGS---DLDAATQAKLNRGRRTVEVLKQP 423
Cdd:PRK07594 334 RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEyqrGVDTDTDKAIDTYPDICTFLRQS 413
|
....*...
gi 568064195 424 VHEPLPVE 431
Cdd:PRK07594 414 KDEVCGPE 421
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
25-438 |
3.01e-42 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 156.00 E-value: 3.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 25 VTETGVVTYIGDgIARAHGLDNAMSGellifengsYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGKIMEVPVGDALI 104
Cdd:PRK08472 30 IEADGLNPSVGD-IVKIESSDNGKEC---------LGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 105 GRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSISIDAIL 184
Cdd:PRK08472 100 GRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 185 NQKGQdmICIYVAIGQKESTVRTQVETlRQYGALDYTIVVTASaSQPSPLLF-LAPYAGVAMAEEFMYNGKHVLIVYDDL 263
Cdd:PRK08472 180 GCLAP--IKVVALIGERGREIPEFIEK-NLGGDLENTVIVVAT-SDDSPLMRkYGAFCAMSVAEYFKNQGLDVLFIMDSV 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 264 SKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKvsdELGGGSITALPFIETQAGDISAYIATNVISITDGQIF 343
Cdd:PRK08472 256 TRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGK---EEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 344 LSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGS-------DLDAAtqakLNRGRRT 416
Cdd:PRK08472 333 LSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAyqkgndkELDEA----ISKKEFM 408
|
410 420
....*....|....*....|..
gi 568064195 417 VEVLKQPVHEPLPVEKQVVILY 438
Cdd:PRK08472 409 EQFLKQNPNELFPFEQTFEQLE 430
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
97-440 |
9.68e-42 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 154.86 E-value: 9.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 97 VPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKt 176
Cdd:PRK08972 97 LPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGK- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 177 SISIDAILNQKGQDMICIYVaIGQKESTVRTQVETLRQYGALDYTIVVTASASQpSPLLFL-APYAGVAMAEEFMYNGKH 255
Cdd:PRK08972 176 SVLLGMMTRGTTADVIVVGL-VGERGREVKEFIEEILGEEGRARSVVVAAPADT-SPLMRLkGCETATTIAEYFRDQGLN 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 256 VLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelGGGSITALPFIETQAGDISAYIATNVI 335
Cdd:PRK08972 254 VLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAFYTVLTEGDDLQDPIADASR 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 336 SITDGQIFLSDSLFNAGVRPAIDAGSSVSRVG----GSAQIKAMKKVAGTLRI-----DLASyreLEAFTKfGSD--LDA 404
Cdd:PRK08972 332 AILDGHIVLSRELADSGHYPAIDIEASISRVMpmviSEEHLEAMRRVKQVYSLyqqnrDLIS---IGAYKQ-GSDprIDN 407
|
330 340 350
....*....|....*....|....*....|....*...
gi 568064195 405 A--TQAKLNrgrrtvEVLKQPVHEPLPVEKQVVILYAL 440
Cdd:PRK08972 408 AirLQPAMN------AFLQQTMKEAVPYDMSVNMLKQL 439
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
96-395 |
2.62e-40 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 151.09 E-value: 2.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 96 EVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGK 175
Cdd:PRK07960 109 QLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGK 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 176 tSISIDAILNQKGQDMICIYVaIGQKESTVRTQVETLRQYGALDYTIVVTASASQpSPLLFL--APYAgVAMAEEFMYNG 253
Cdd:PRK07960 189 -SVLLGMMARYTQADVIVVGL-IGERGREVKDFIENILGAEGRARSVVIAAPADV-SPLLRMqgAAYA-TRIAEDFRDRG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 254 KHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelGGGSITALPFIETQAGDISAYIATN 333
Cdd:PRK07960 265 QHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS--GGGSITAFYTVLTEGDDQQDPIADS 342
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568064195 334 VISITDGQIFLSDSLFNAGVRPAIDAGSSVSRvggsaqikAMkkvagTLRIDLASYRELEAF 395
Cdd:PRK07960 343 ARAILDGHIVLSRRLAEAGHYPAIDIEASISR--------AM-----TALIDEQHYARVRQF 391
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
94-380 |
2.04e-39 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 144.29 E-value: 2.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 94 IMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGD--- 170
Cdd:cd01135 1 VLKLPVSEDMLGRIFNGSGKPIDGGPPILPEDYLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGsgl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 171 ----------RQTGktsisidaiLNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPY 240
Cdd:cd01135 81 phnelaaqiaRQAG---------VVGSEENFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 241 AGVAMAEEFMY-NGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGdvfYLHSRL---LERSAKVSDElgGGSITAL 316
Cdd:cd01135 152 MALTTAEYLAYeKGKHVLVILTDMTNYAEALREVSAAREEVPGRRGYPG---YMYTDLatiYERAGRVEGR--KGSITQI 226
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064195 317 PFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVggsaqikaMKKVAG 380
Cdd:cd01135 227 PILTMPNDDITHPIPDLTGYITEGQIYLDRDLHNKGIYPPIDVLPSLSRL--------MKSGIG 282
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
95-366 |
1.88e-35 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 137.55 E-value: 1.88e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 95 MEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTG 174
Cdd:PRK05688 101 GRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVG 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 175 KtSISIDAILNQKGQDMICIYVaIGQKESTVRTQVETLRQYGALDYTIVVtASASQPSPLLFL--APYAgVAMAEEFMYN 252
Cdd:PRK05688 181 K-SVLLGMMTRFTEADIIVVGL-IGERGREVKEFIEHILGEEGLKRSVVV-ASPADDAPLMRLraAMYC-TRIAEYFRDK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 253 GKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAkvSDELGGGSITALPFIETQAGDISAYIAT 332
Cdd:PRK05688 257 GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG--NAEPGGGSITAFYTVLSEGDDQQDPIAD 334
|
250 260 270
....*....|....*....|....*....|....
gi 568064195 333 NVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRV 366
Cdd:PRK05688 335 SARGVLDGHIVLSRRLAEEGHYPAIDIEASISRV 368
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
96-440 |
8.13e-34 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 132.71 E-value: 8.13e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 96 EVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGK 175
Cdd:PRK07196 89 ELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGK 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 176 tSISIDAILNQKGQDMICIYVaIGQKESTVRTQVETLRQYGALDYTIVVTASASQpSPLLFL-APYAGVAMAEEFMYNGK 254
Cdd:PRK07196 169 -SVLLGMITRYTQADVVVVGL-IGERGREVKEFIEHSLQAAGMAKSVVVAAPADE-SPLMRIkATELCHAIATYYRDKGH 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 255 HVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAkvsDELGGGSITALPFIETQAGDISAYIATNV 334
Cdd:PRK07196 246 DVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAG---NSSGNGTMTAIYTVLAEGDDQQDPIVDCA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 335 ISITDGQIFLSDSLFNAGVRPAIDAGSSVSR----VGGSAQIKAMKKVAGTLRiDLASYRELEAFTKFGSDLDAATQAKL 410
Cdd:PRK07196 323 RAVLDGHIVLSRKLAEAGHYPAIDISQSISRcmsqVIGSQQAKAASLLKQCYA-DYMAIKPLIPLGGYVAGADPMADQAV 401
|
330 340 350
....*....|....*....|....*....|
gi 568064195 411 NRGRRTVEVLKQPVHEPLPVEKQVVILYAL 440
Cdd:PRK07196 402 HYYPAITQFLRQEVGHPALFSASVEQLTGM 431
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
20-391 |
1.11e-33 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 132.43 E-value: 1.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 20 QPNFDVTETGVVTYIGDGIARAHGL-DNAMSGELLIFENG---SYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGKiM 95
Cdd:PRK06002 19 APEPLVRIGGTVSEVTASHYRVRGLsRFVRLGDFVAIRADggtHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGP-L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 96 EVPVGDALIGRVVDPLGRPVDGLGEIKT-DKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTG 174
Cdd:PRK06002 98 RIRPDPSWKGRVINALGEPIDGLGPLAPgTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 175 KTSISidAILNQ-KGQDMICIYVaIGQKESTVRTQVE-TLRqyGALDYTIVVTASaSQPSPLLF-LAPYAGVAMAEEFMY 251
Cdd:PRK06002 178 KSTLL--AMLARaDAFDTVVIAL-VGERGREVREFLEdTLA--DNLKKAVAVVAT-SDESPMMRrLAPLTATAIAEYFRD 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 252 NGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelGGGSITALPFIETQAGDISAYIA 331
Cdd:PRK06002 252 RGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE--GGGSITGIFSVLVDGDDHNDPVA 329
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 332 TNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRE 391
Cdd:PRK06002 330 DSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRLKSMIARFEE 389
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
56-365 |
7.30e-32 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 127.25 E-value: 7.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 56 ENGSYGMAQNLESTD--VGIIILGDFTDIREGDT-IRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETP 132
Cdd:PRK04196 34 PNGEKRRGQVLEVSEdkAVVQVFEGTTGLDLKDTkVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 133 APGVMQRKSVSEPLQTGLKAIDALVPIGRGQR------------EL---IIgdRQtgktsisidAILNQKGQDMICIYVA 197
Cdd:PRK04196 114 PINPVAREYPEEFIQTGISAIDGLNTLVRGQKlpifsgsglphnELaaqIA--RQ---------AKVLGEEENFAVVFAA 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 198 IGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYN-GKHVLIVYDDLSKQAVAYRELSLL 276
Cdd:PRK04196 183 MGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEkGMHVLVILTDMTNYCEALREISAA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 277 LRRPPGREAFPGdvfYLHSRL---LERSAKVSDElgGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGV 353
Cdd:PRK04196 263 REEVPGRRGYPG---YMYTDLatiYERAGRIKGK--KGSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGI 337
|
330
....*....|..
gi 568064195 354 RPAIDAGSSVSR 365
Cdd:PRK04196 338 YPPIDVLPSLSR 349
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
77-399 |
1.17e-30 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 123.55 E-value: 1.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 77 GDFTDIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKT-RPVETPAPGVMQRKSVSEPLQTGLKAIDA 155
Cdd:PRK08927 72 GPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVpYPLRAPPPPAHSRARVGEPLDLGVRALNT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 156 LVPIGRGQRELIIGDRQTGKTSI------SIDAilnqkgqDMICIYVaIGQKESTVRTQVE-TLRQYGaLDYTIVVTASA 228
Cdd:PRK08927 152 FLTCCRGQRMGIFAGSGVGKSVLlsmlarNADA-------DVSVIGL-IGERGREVQEFLQdDLGPEG-LARSVVVVATS 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 229 SQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAkvSDEL 308
Cdd:PRK08927 223 DEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAG--PGPI 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 309 GGGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLAS 388
Cdd:PRK08927 301 GEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMAT 380
|
330
....*....|.
gi 568064195 389 YRELEAFTKFG 399
Cdd:PRK08927 381 YADMEELIRLG 391
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
97-428 |
1.13e-29 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 120.78 E-value: 1.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 97 VPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKT 176
Cdd:PRK05922 92 LHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 177 SIsIDAIlnQKG-QDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKH 255
Cdd:PRK05922 172 SL-LSTI--AKGsKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHR 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 256 VLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKvSDElggGSITALPFIETQAG--DIsayIATN 333
Cdd:PRK05922 249 VLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGN-NDK---GSITALYAILHYPNhpDI---FTDY 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 334 VISITDGQIFLSdSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSdLDAATQAKLNRG 413
Cdd:PRK05922 322 LKSLLDGHFFLT-PQGKALASPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGA-YVPGQDAHLDRA 399
|
330
....*....|....*
gi 568064195 414 RRTVEVLKQPVHEPL 428
Cdd:PRK05922 400 VKLLPSIKQFLSQPL 414
|
|
| ATP-synt_F1_alpha_N |
cd18116 |
F1-ATP synthase alpha (A) subunit, N-terminal domain; The alpha (A) subunit of the F1 complex ... |
27-93 |
4.98e-29 |
|
F1-ATP synthase alpha (A) subunit, N-terminal domain; The alpha (A) subunit of the F1 complex of FoF1-ATP synthase, N-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, in mitochondrial inner membranes, and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Pssm-ID: 349740 [Multi-domain] Cd Length: 67 Bit Score: 108.69 E-value: 4.98e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568064195 27 ETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGK 93
Cdd:cd18116 1 EVGRVLSVGDGIARVYGLPNVMAGELVEFPGGVKGMALNLEEDNVGVVLLGDYKLIKEGDSVKRTGR 67
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
87-375 |
1.44e-26 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 112.12 E-value: 1.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 87 TIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQREL 166
Cdd:TIGR01040 66 TCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 167 IIGD-------------RQTGKTSISIDAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSP 233
Cdd:TIGR01040 146 IFSAaglphneiaaqicRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 234 LLFLAPYAGVAMAEEFMYN-GKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVsdELGGGS 312
Cdd:TIGR01040 226 ERIITPRLALTTAEYLAYQcEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRV--EGRNGS 303
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064195 313 ITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAM 375
Cdd:TIGR01040 304 ITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 366
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
85-453 |
2.84e-23 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 101.98 E-value: 2.84e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 85 GDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQR 164
Cdd:PRK06793 79 GDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 165 ELIIGDRQTGKTSISidAILNQKGQDMICIYVAIGQKESTVRTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVA 244
Cdd:PRK06793 159 IGIFAGSGVGKSTLL--GMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATS 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 245 MAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPgreaFPGDVFYLHS---RLLERSAKVSDelggGSITALPFIET 321
Cdd:PRK06793 237 IAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP----IGGKTLLMESymkKLLERSGKTQK----GSITGIYTVLV 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 322 QAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSD 401
Cdd:PRK06793 309 DGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTI 388
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568064195 402 LDAATQAKLNRGRRTVEVLKQpvheplpvekqvvilyALTHGFLDSVPVDDI 453
Cdd:PRK06793 389 QENAENAYIFECKNKVEGINT----------------FLKQGRSDSFQFDDI 424
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
50-365 |
4.67e-23 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 101.26 E-value: 4.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 50 GELLIFEN---GSYGMAQNLESTDVGIIILGDFTDIREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKT 126
Cdd:PRK02118 26 GELATVERkdgSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGEPI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 127 rPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDrqTGKTSISIDA-ILNQKGQDMIcIYVAIGQKESTV 205
Cdd:PRK02118 106 -EIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSV--SGEPYNALLArIALQAEADII-ILGGMGLTFDDY 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 206 RTQVETLRQYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNG-KHVLIVYDDLSKQAVAYRELSLLLRRPPGRE 284
Cdd:PRK02118 182 LFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGkKKVLVLLTDMTNFADALKEISITMDQIPSNR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 285 AFPGDvfyLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAYIATNVISITDGQIFLSdslfnagvRPAIDAGSSVS 364
Cdd:PRK02118 262 GYPGS---LYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYLR--------RGRIDPFGSLS 330
|
.
gi 568064195 365 R 365
Cdd:PRK02118 331 R 331
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
96-366 |
3.02e-22 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 96.52 E-value: 3.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 96 EVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGK 175
Cdd:cd01133 1 SVPVGEETLGRIFNVLGEPIDERGPIKAKERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 176 TSISIDAILN-QKGQDMICIYVAIGQ------------KESTVrtqvetlRQYGALDYTIVVTASASQPSPLLFLAPYAG 242
Cdd:cd01133 81 TVLIMELINNiAKAHGGYSVFAGVGErtregndlyhemKESGV-------INLDGLSKVALVYGQMNEPPGARARVALTG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 243 VAMAEEFM-YNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDelggGSITALPFIET 321
Cdd:cd01133 154 LTMAEYFRdEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGSLQERITSTKK----GSITSVQAVYV 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 568064195 322 QAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVSRV 366
Cdd:cd01133 230 PADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRI 274
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
95-365 |
2.91e-17 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 82.24 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 95 MEVPVGDALIGRVVDPLGRPVDGLGEIKTD--------KTRPVETPAPgVMQRKSVSEPLQTGLKAIDALVPIGRGQREL 166
Cdd:cd01134 2 LSVELGPGLLGSIFDGIQRPLEVIAETGSIfiprgvnvQRWPVRQPRP-VKEKLPPNVPLLTGQRVLDTLFPVAKGGTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 167 IIGDRQTGKTSISiDAILNQKGQDMIcIYVAIGQKESTVrtqVETLRQYGAL----------DYTIVVTASASQPSPLLF 236
Cdd:cd01134 81 IPGPFGCGKTVIS-QSLSKWSNSDVV-IYVGCGERGNEM---AEVLEEFPELkdpitgeslmERTVLIANTSNMPVAARE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 237 LAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGdvfYLHSRL---LERSAKVSdELGG--- 310
Cdd:cd01134 156 ASIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPA---YLGARLaefYERAGRVR-CLGSpgr 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064195 311 -GSITALPFIETQAGDISAYIATNVISITdgQIF--LSDSLFNAGVRPAIDAGSSVSR 365
Cdd:cd01134 232 eGSVTIVGAVSPPGGDFSEPVTQATLRIV--QVFwgLDKKLAQRRHFPSINWLISYSK 287
|
|
| ATP-synt_ab_N |
pfam02874 |
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase ... |
27-92 |
1.77e-14 |
|
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Pssm-ID: 427029 [Multi-domain] Cd Length: 69 Bit Score: 67.96 E-value: 1.77e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568064195 27 ETGVVTYIGDGIARAHGLDNAMSGELLIFENGSYGMAQNLESTDVGIIILGDFTDIREGDTIRRTG 92
Cdd:pfam02874 4 VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSRGDEVKRTG 69
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
80-393 |
4.19e-14 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 74.31 E-value: 4.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 80 TD-IREGDTIRRTGKIMEVPVGDALIGRVVDPLGRPVDGLGEIKTDKTRPVETPAPGVMQRKSVSEPLQTGLKAIDALVP 158
Cdd:CHL00060 78 TDgLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAP 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 159 IGRGQRELIIGDRQTGKTSISIDAILN-QKGQDMICIYVAIGQ------------KESTVRTQVETLRQYGALDYtivvt 225
Cdd:CHL00060 158 YRRGGKIGLFGGAGVGKTVLIMELINNiAKAHGGVSVFGGVGErtregndlymemKESGVINEQNIAESKVALVY----- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 226 ASASQPSPLLFLAPYAGVAMAEEFM-YNGKHVLIVYDDLSKQAVAYRELSLLLRRppgreaFPGDVFY---LHSR---LL 298
Cdd:CHL00060 233 GQMNEPPGARMRVGLTALTMAEYFRdVNKQDVLLFIDNIFRFVQAGSEVSALLGR------MPSAVGYqptLSTEmgsLQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 299 ERSAKVSDelggGSITALPFIETQAGDISAYIATNVISITDGQIFLSDSLFNAGVRPAIDAGSSVS-----RVGGSAQIK 373
Cdd:CHL00060 307 ERITSTKE----GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTStmlqpRIVGEEHYE 382
|
330 340
....*....|....*....|
gi 568064195 374 AMKKVAGTLRidlaSYRELE 393
Cdd:CHL00060 383 TAQRVKQTLQ----RYKELQ 398
|
|
| ATP-synt_F1_V1_A1_AB_FliI_C |
cd01429 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
375-441 |
3.17e-13 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349744 [Multi-domain] Cd Length: 70 Bit Score: 64.77 E-value: 3.17e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064195 375 MKKVAGTLRIDLASYRELEAFTKFGSD--LDAATQAKLNRGRRTVEVLKQPVHEPLPVEKQVVILYALT 441
Cdd:cd01429 1 HKAVARGFKAILAQYRELRDIVAIVGDdaLSEADKKTLSRGRRLEEFLQQGQFEPETIEDTLEKLYPIK 69
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
128-315 |
2.88e-08 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 56.33 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 128 PVETPAPgVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKT----SIS--IDAilnqkgqDmICIYVAIGQK 201
Cdd:PRK04192 194 PVRRPRP-YKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTvtqhQLAkwADA-------D-IVIYVGCGER 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 202 ESTVrtqVETLRQYGAL----------DYTIVV--TAS-------ASQpspllflapYAGVAMAEEFMYNGKHVLIVYDD 262
Cdd:PRK04192 265 GNEM---TEVLEEFPELidpktgrplmERTVLIanTSNmpvaareASI---------YTGITIAEYYRDMGYDVLLMADS 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064195 263 LSKQAVAYRELSLLLRRPPGREAFPGdvfYLHSRL---LERSAKVSDeLGG--GSITA 315
Cdd:PRK04192 333 TSRWAEALREISGRLEEMPGEEGYPA---YLASRLaefYERAGRVKT-LGGeeGSVTI 386
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
218-337 |
1.96e-06 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 50.79 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064195 218 LDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGdvfYLHSRL 297
Cdd:PRK14698 717 MERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKL 793
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568064195 298 LE------RSAKVSDELGGGSITALPFIETQAGDISAYIATNVISI 337
Cdd:PRK14698 794 AEfyeragRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRV 839
|
|
| |
