|
Name |
Accession |
Description |
Interval |
E-value |
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-204 |
1.53e-103 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 298.06 E-value: 1.53e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNL---LG 77
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLrrkVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:COG1126 81 MVFQQFNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLF 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 158 DEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1126 161 DEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVV 207
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-204 |
1.06e-89 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 262.47 E-value: 1.06e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNL---LGF 78
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELrqkVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-200 |
3.83e-80 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 239.22 E-value: 3.83e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL---PLDELEKRNLLG 77
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 158 DEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIA 200
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVA 203
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-203 |
2.21e-78 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 238.46 E-value: 2.21e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDEL--EKRNlLGF 78
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGR--DVTGLppEKRN-VGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:COG3842 82 VFQDYALFPHLTVAENVAF-GLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 159 EPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG3842 161 EPLSALDAKLREEMREELrrLQ-RELGITFIYVTHDQEEALALADRI 206
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-204 |
3.72e-77 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 231.09 E-value: 3.72e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFG----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELEK- 72
Cdd:COG1136 4 LLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDissLSERELARl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 -RNLLGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:COG1136 84 rRRHIGFVFQFFNLLPELTALENVAL-PLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNR 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAEnIADTIL 204
Cdd:COG1136 163 PKLILADEPTGNLDSKTGEEVLELLRElNRELGTTIVMVTHDPELAA-RADRVI 215
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-204 |
2.34e-75 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 226.22 E-value: 2.34e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELEK-- 72
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDiskLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFtKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVP-KKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAEnIADTIL 204
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRElNKEAGTTIVVVTHDPELAE-YADRII 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-204 |
1.34e-74 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 222.83 E-value: 1.34e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE---LEKRNLLGF 78
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEdelPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTlspiktknftkedaekkaislltrlglaehvnaypYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03229 81 VFQDFALFPHLTVLENIA-----------------------------------LGLSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 159 EPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03229 126 EPTSALDPITRREVRALLKSlQAQLGITVVLVTHDLDEAARLADRVV 172
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-204 |
2.13e-74 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 223.55 E-value: 2.13e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN-IGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03259 80 DYALFPHLTVAENI-AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 162 SALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03259 159 SALDAKLREELREELkeLQ-RELGITTIYVTHDQEEALALADRIA 202
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-203 |
5.13e-74 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 223.32 E-value: 5.13e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNL---L 76
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITgLSEKELYELrrrI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG1127 85 GMLFQGGALFDSLTVFENVAFPLREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG1127 165 YDEPTAGLDPITSAVIDELIRElRDELGLTSVVVTHDLDSAFAIADRV 212
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-204 |
1.59e-72 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 220.35 E-value: 1.59e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRnlL 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGK--PVTGPGPD--R 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG1116 83 GVVFQEPALLPWLTVLDNVAL-GLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRlWQETGKTVLFVTHDVDEAVFLADRVV 210
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-200 |
2.84e-71 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 216.42 E-value: 2.84e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRNL-- 75
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsqKPSEKAIRLLrq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 -LGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:COG4161 83 kVGMVFQQYNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIA 200
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVA 208
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-200 |
1.19e-69 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 216.09 E-value: 1.19e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPldeLEKRNlLG 77
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRdvtDLP---PKDRN-IA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTlSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:COG3839 79 MVFQSYALYPHMTVYENIA-FPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 158 DEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHD----LQFAENIA 200
Cdd:COG3839 158 DEPLSNLDAKLRVEMRAEIkrLH-RRLGTTTIYVTHDqveaMTLADRIA 205
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-204 |
2.48e-69 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 210.79 E-value: 2.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRnlLG 77
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE--PVTGPGPD--RG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVAL-GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 158 DEPTSALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03293 156 DEPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVV 203
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-204 |
5.09e-66 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 203.32 E-value: 5.09e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE-------LEKRN 74
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKtpsdkaiRELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-204 |
1.01e-65 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 202.35 E-value: 1.01e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRNLLG 77
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLsPIKTK-NFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAF-PLREHtRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSlKKELGLTSIMVTHDLDTAFAIADRIA 208
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-204 |
1.13e-65 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 202.22 E-value: 1.13e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:COG1131 81 EPALYPDLTVRENLRFF-ARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1131 160 SGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVA 202
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-204 |
1.35e-65 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 205.38 E-value: 1.35e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLD-ELEKRNlLGFVF 80
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNlPPRERR-VGFVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLEN----LTLSPIktknfTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG1118 82 QHYALFPHMTVAENiafgLRVRPP-----SKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 157 YDEPTSALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1118 157 LDEPFGALDAKVRKELRRWLRRLhDELGGTTVFVTHDQEEALELADRVV 205
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-201 |
3.03e-64 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 199.26 E-value: 3.03e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPL------------- 67
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLkpdrdgelvpadr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 68 DELEK-RNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALAR 146
Cdd:COG4598 88 RQLQRiRTRLGMVFQSFNLWSHMTVLENVIEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIAR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 147 AMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:COG4598 168 ALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTHEMGFARDVSS 222
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-204 |
3.82e-64 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 206.29 E-value: 3.82e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRN 74
Cdd:COG1123 260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTkLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 L---LGFVFQD--FQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:COG1123 340 LrrrVQMVFQDpySSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDlQRELGLTYLFISHDLAVVRYIADRVA 476
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-204 |
4.64e-64 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 198.36 E-value: 4.64e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELplDELEKRNL---- 75
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDV--TALRGRALrrlr 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 --LGFVFQDFQLFPHLTVLEN-LT-----LSPIKT--KNFTKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALA 145
Cdd:COG3638 80 rrIGMIFQQFNLVPRLSVLTNvLAgrlgrTSTWRSllGLFPPEDRER-ALEALERVGLADKAYQRADQLSGGQQQRVAIA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG3638 159 RALVQEPKLILADEPVASLDPKTARQVMDLLRRiAREDGITVVVNLHQVDLARRYADRII 218
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-203 |
1.65e-62 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 193.24 E-value: 1.65e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRD-IAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03301 80 NYALYPHMTVYDNIAF-GLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 162 SALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03301 159 SNLDAKLRVQMRAELkrLQ-QRLGTTTIYVTHDQVEAMTMADRI 201
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-197 |
8.95e-62 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 191.88 E-value: 8.95e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELE---- 71
Cdd:COG4181 8 IIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfALDEDArarl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLLGFVFQDFQLFPHLTVLENLTLsPIKTKNftKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:COG4181 88 RARHVGFVFQSFQLLPTLTALENVML-PLELAG--RRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATE 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAE 197
Cdd:COG4181 165 PAILFADEPTGNLDAATGEQIIDLLFElNRERGTTLVLVTHDPALAA 211
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-195 |
1.58e-61 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 191.03 E-value: 1.58e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELplDELEKRNL---- 75
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDL--SRLKRREIpylr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 --LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:COG2884 79 rrIGVVFQDFRLLPDRTVYENVAL-PLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 154 IIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQF 195
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLEL 199
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-201 |
3.25e-61 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 191.12 E-value: 3.25e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSG-----DIIYNGEElPLDELEK--- 72
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGtirvgDITIDTAR-SLSQQKGlir 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 --RNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMI 150
Cdd:PRK11264 82 qlRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD 212
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-201 |
2.31e-60 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 191.83 E-value: 2.31e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNL 75
Cdd:COG1135 1 MIELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLtALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 ---LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:COG1135 81 rrkIGMIFQHFNLLSSRTVAENVAL-PLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:COG1135 160 KVLLCDEATSALDPETTRSILDLLKDiNRELGLTIVLITHEMDVVRRICD 209
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-207 |
3.08e-60 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 187.33 E-value: 3.08e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPLDELEKRnlLGF 78
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKplsAMPPPEWRRQ--VAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHlTVLENLTL-SPIKTKNFTKEDAEKkaisLLTRLGLAEHVNAYPYS-LSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG4619 79 VPQEPALWGG-TVRDNLPFpFQLRERKFDRERALE----LLERLGLPPDILDKPVErLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLREyLAEEGRAVLWVSHDPEQIERVADRVLTLE 205
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-204 |
3.25e-60 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 187.92 E-value: 3.25e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFV 79
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRElRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQ--DFQLFpHLTVLENLTLSPiktKNF--TKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:COG1122 81 FQnpDDQLF-APTVEEDVAFGP---ENLglPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVI 205
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
4-206 |
3.65e-60 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 187.05 E-value: 3.65e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE-LPLDELEK----RNLLGF 78
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQEtPPLNSKKAskfrREKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:TIGR03608 81 LFQNFALIENETVEENLDL-GLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILAD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAEnIADTILKV 206
Cdd:TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-204 |
1.51e-59 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 186.25 E-value: 1.51e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNL 75
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTlLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 ---LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:cd03258 81 rrrIGMIFQHFNLLSSRTVFENVAL-PLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDiNRELGLTIVLITHEMEVVKRICDRVA 212
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-204 |
1.58e-58 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 183.48 E-value: 1.58e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEK--- 72
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlKLSRRLRkir 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLGFVFQDFQ--LFPHLTVLENLT-LSPIKTKNFTKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAM 148
Cdd:cd03257 81 RKEIQMVFQDPMssLNPRMTIGEQIAePLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKlQEELGLTLLFITHDLGVVAKIADRVA 217
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-204 |
1.79e-58 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 183.92 E-value: 1.79e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNL---L 76
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINkLKGKALRQLrrqI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENL------TLSPIKT--KNFTKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVlsgrlgRRSTWRSlfGLFPKEEKQR-ALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRiNREEGITVIVSLHQVDLAREYADRIV 216
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-204 |
4.74e-58 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 180.67 E-value: 4.74e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLtlspiktknftkedaekkaislltrlglaehvnaypySLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03230 81 EPSLYENLTVRENL-------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPT 123
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVA 166
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-203 |
5.51e-58 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 182.44 E-value: 5.51e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP-VNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03300 80 NYALFPHLTVFENIAF-GLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 162 SALDPELR--LEVEKLILQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03300 159 GALDLKLRkdMQLELKRLQ-KELGITFVFVTHDQEEALTMSDRI 201
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-204 |
2.76e-57 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 179.97 E-value: 2.76e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFV 79
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLtKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDF--QLFpHLTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:cd03225 81 FQNPddQFF-GPTVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 158 DEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI 205
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-203 |
3.15e-57 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 184.13 E-value: 3.15e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-VGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLEN----LTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:PRK10851 82 HYALFRHMTVFDNiafgLTVLP-RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 158 DEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK10851 161 DEPFGALDAQVRKELRRWLRQlHEELKFTSVFVTHDQEEAMEVADRV 207
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-203 |
5.20e-57 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 180.19 E-value: 5.20e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE-LPLDELEKRNLLGFV 79
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDiREQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGL--AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVP-KLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 158 DEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03295 160 DEPFGALDPITRDQLQEEFKRlQQELGKTIVFVTHDIDEAFRLADRI 206
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-204 |
8.51e-57 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 179.46 E-value: 8.51e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN-VGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLEN----LTLSPIKTKNfTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:cd03296 82 HYALFRHMTVFDNvafgLRVKPRSERP-PEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 158 DEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03296 161 DEPFGALDAKVRKELRRWLRRlHDELHVTTVFVTHDQEEALEVADRVV 208
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-203 |
4.54e-56 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 177.37 E-value: 4.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETI-----DSGDIIYNGE---ELPLDELEKR 73
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKdiyDLDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 74 NLLGFVFQDFQLFPhLTVLENLTLSP----IKTKNFTKEDAEKkaisLLTRLGLAEHVN--AYPYSLSGGQKQRVALARA 147
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLrlhgIKLKEELDERVEE----ALRKAALWDEVKdrLHALGLSGGQQQRLCLARA 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLIlqnRELG--MTQIVVTHDLQFAENIADTI 203
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELI---AELKkeYTIVIVTHNMQQAARVADRT 210
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-204 |
4.85e-56 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 178.07 E-value: 4.85e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL-EKRNL 75
Cdd:COG1124 1 MLEVRNLSVSYGQGgrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRkAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQ--LFPHLTVLEnlTLS-PIKTKNFTkeDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAMMID 151
Cdd:COG1124 81 VQMVFQDPYasLHPRHTVDR--ILAePLRIHGLP--DREERIAELLEQVGLPPSFlDRYPHQLSGGQRQRVAIARALILE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQNR-ELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1124 157 PELLLLDEPTSALDVSVQAEILNLLKDLReERGLTYLFVSHDLAVVAHLCDRVA 210
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-204 |
1.83e-53 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 171.19 E-value: 1.83e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENL----TLSPIKtknftKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG4555 81 DERGLYDRLTVRENIryfaELYGLF-----DEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4555 156 LDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVV 203
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-204 |
5.91e-53 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 172.16 E-value: 5.91e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE---TIDSGDIIYNGEEL-PLDELEK 72
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLpppGITSGEILFDGEDLlKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLG----FVFQDFQ--LFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGL---AEHVNAYPYSLSGGQKQRVA 143
Cdd:COG0444 81 RKIRGreiqMIFQDPMtsLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGMRQRVM 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG0444 161 IARALALEPKLLIADEPTTALDVTIQAQILNLLkdLQ-RELGLAILFITHDLGVVAEIADRVA 222
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-204 |
6.58e-53 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 169.55 E-value: 6.58e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIisDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRnLLGFVF 80
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER-PVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLEN--LTLSPikTKNFTKEDaEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:COG3840 78 QENNLFPHLTVAQNigLGLRP--GLKLTAEQ-RAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLD 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 159 EPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG3840 155 EPFSALDPALRQEMLDLVDElCRERGLTVLMVTHDPEDAARIADRVL 201
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-198 |
7.87e-53 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 168.43 E-value: 7.87e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTL-SPIKTKNFTKEDAEkkaiSLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:COG4133 82 HADGLKPELTVRENLRFwAALYGLRADREAID----EALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAEN 198
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGAVLLTTHQPLELAA 196
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-204 |
5.71e-52 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 167.91 E-value: 5.71e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PldelEKRNLL 76
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDItglpP----HRIARL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFV--FQDFQLFPHLTVLENLTL------------SPIKTKNFTKEDAE--KKAISLLTRLGLAEHVNAYPYSLSGGQKQ 140
Cdd:COG0411 80 GIArtFQNPRLFPELTVLENVLVaaharlgrgllaALLRLPRARREEREarERAEELLERVGLADRADEPAGNLSYGQQR 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 141 RVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG0411 160 RLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRlRDERGITILLIEHDMDLVMGLADRIV 224
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-204 |
5.86e-52 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 167.48 E-value: 5.86e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNL--- 75
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDItKLRGKKLRKLrrr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQLFPHLTVLENLTLSPIKTKN--------FTKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARA 147
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPtwrsllgrFSEEDKER-ALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRiNKEDGITVIINLHQVDLAKKYADRIV 217
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-204 |
6.72e-52 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 171.28 E-value: 6.72e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQ 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH-VNTVFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PRK09452 94 SYALFPHMTVFENVAFG-LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 162 SALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK09452 173 SALDYKLRKQMQNELkaLQ-RKLGITFVFVTHDQEEALTMSDRIV 216
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-204 |
9.64e-52 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 166.46 E-value: 9.64e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDElekRNLLGF 78
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDitgLPPHE---IARLGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 V--FQDFQLFPHLTVLENLTL-------SPIKTKNFTKEDAE--KKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARA 147
Cdd:cd03219 78 GrtFQIPRLFPELTVLENVMVaaqartgSGLLLARARREEREarERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT 214
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-204 |
2.55e-49 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 159.72 E-value: 2.55e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEK---RNL 75
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVnRLRGRQLpllRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENVAL-PLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI 208
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-204 |
3.10e-49 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 160.59 E-value: 3.10e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNL---LG 77
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGR--DLASLSRRELarrIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTL------SPIKTknFTKEDAEkKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:COG1120 79 YVPQEPPAPFGLTVRELVALgryphlGLFGR--PSAEDRE-AVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQE 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1120 156 PPLLLLDEPTSHLDLAHQLEVLELLRRlARERGRTVVMVLHDLNLAARYADRLV 209
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-204 |
6.96e-49 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 166.23 E-value: 6.96e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL---ETIDSGDIIYNGEEL-PLDELEKRN 74
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLlphGGRISGEVLLDGRDLlELSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LLGFVFQDF--QLFPhLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:COG1123 84 RIGMVFQDPmtQLNP-VTVGDQIAE-ALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1123 162 DLLIADEPTTALDVTTQAEILDLLRElQRERGTTVLLITHDLGVVAEIADRVV 214
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-201 |
1.59e-48 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 161.51 E-value: 1.59e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF--GEKQII--SDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDE----LE 71
Cdd:PRK11153 1 MIELKNISKVFpqGGRTIHalNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtALSEkelrKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLlGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:PRK11153 81 RRQI-GMIFQHFNLLSSRTVFDNVAL-PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDiNRELGLTIVLITHEMDVVKRICD 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-204 |
2.10e-48 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 157.31 E-value: 2.10e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPldelEKRNLLGFVFQD 82
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 83 FQL---FPhLTVLENLTLSPIKTKNF----TKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:cd03235 77 RSIdrdFP-ISVRDVVLMGLYGHKGLfrrlSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-204 |
2.27e-48 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 158.59 E-value: 2.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPL-----------DEL 70
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLvrdkdgqlkvaDKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRNL---LGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNA-YPYSLSGGQKQRVALAR 146
Cdd:PRK10619 86 QLRLLrtrLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGkYPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 147 AMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
7-203 |
2.65e-48 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 158.96 E-value: 2.65e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 7 ISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNL----LGFVFQ 81
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIaAMSRKELRELrrkkISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03294 110 SFALLPHRTVLENVAF-GLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03294 189 SALDPLIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRI 231
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-204 |
3.09e-48 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 158.30 E-value: 3.09e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIynGEELPLDELekRNLLGFVFQ 81
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL--AGTAPLAEA--REDTRLMFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSpiktknfTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PRK11247 89 DARLLPWKKVIDNVGLG-------LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 162 SALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11247 162 GALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVL 205
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-204 |
6.19e-48 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 157.17 E-value: 6.19e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPldelEKRNLLGFVF 80
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR----RARRRIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQL---FPhLTVLENLTLSPIKTKNF----TKEDAEkKAISLLTRLGLAEHVNAyPYS-LSGGQKQRVALARAMMIDP 152
Cdd:COG1121 82 QRAEVdwdFP-ITVRDVVLMGRYGRRGLfrrpSRADRE-AVDEALERVGLEDLADR-PIGeLSGGQQQRVLLARALAQDP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1121 159 DLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVL 210
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-204 |
7.77e-48 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 159.88 E-value: 7.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLgFVFQ 81
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC-MVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PRK11432 86 SYALFPHMSLGENVGYG-LKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 162 SALDPELRLEVEKLI--LQNReLGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11432 165 SNLDANLRRSMREKIreLQQQ-FNITSLYVTHDQSEAFAVSDTVI 208
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
7-204 |
1.55e-47 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 155.15 E-value: 1.55e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 7 ISKRFGekqiisDLNLKVP---EKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELpLDELEKRNL------LG 77
Cdd:cd03297 6 IEKRLP------DFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL-FDSRKKINLppqqrkIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDE---LLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 158 DEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03297 156 DEPFSALDRALRLQLLPELKQiKKNLNIPVIFVTHDLSEAEYLADRIV 203
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-204 |
3.07e-47 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 152.92 E-value: 3.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG--EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGF 78
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRdLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLtlspiktknftkedaekkaislltrlglaehvnaypysLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03228 81 VPQDPFLF-SGTIRENI--------------------------------------LSGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 159 EPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03228 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-ADRII 165
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-204 |
6.14e-47 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 157.96 E-value: 6.14e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELkNISKRFGEKQIisDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELpLDE-------LEKR 73
Cdd:COG4148 2 MLEV-DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVL-QDSargiflpPHRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 74 NLlGFVFQDFQLFPHLTVLENLTL----SPIKTKNFTKEDAekkaISLLtrlGLAEHVNAYPYSLSGGQKQRVALARAMM 149
Cdd:COG4148 78 RI-GYVFQEARLFPHLSVRGNLLYgrkrAPRAERRISFDEV----VELL---GIGHLLDRRPATLSGGERQRVAIGRALL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 150 IDPEIIGYDEPTSALDPELRLEV----EKLilqNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4148 150 SSPRLLLMDEPLAALDLARKAEIlpylERL---RDELDIPILYVSHSLDEVARLADHVV 205
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
2-207 |
6.22e-47 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 153.64 E-value: 6.22e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE----KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL------PLDELE 71
Cdd:TIGR02982 2 ISIRNLNHYYGHgslrKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELhgaskkQLVQLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRnlLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:TIGR02982 82 RR--IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLNYYPHNLSGGQKQRVAIARALVHH 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAeNIADTILKVQ 207
Cdd:TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKlAKEQGCTILMVTHDNRIL-DVADRILQME 215
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-203 |
7.39e-47 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 154.03 E-value: 7.39e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIiSDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLlGFVFQ 81
Cdd:cd03299 1 LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI-SYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03299 79 NYALFPHMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 162 SALDPE----LRLEVEKLIlqnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03299 158 SALDVRtkekLREELKKIR---KEFGVTVLHVTHDFEEAWALADKV 200
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
4-203 |
1.88e-46 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 156.73 E-value: 1.88e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVFQDF 83
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG-VGMVFQSY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 84 QLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:PRK11000 85 ALYPHLSVAENMSFG-LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 164 LDPEL----RLEVEKLilqNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK11000 164 LDAALrvqmRIEISRL---HKRLGRTMIYVTHDQVEAMTLADKI 204
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-204 |
4.40e-46 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 149.70 E-value: 4.40e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFVFQ 81
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEElRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfphltvlenltlspiktknftkedaekkaislltrlglaehvnaypysLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd00267 81 ----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd00267 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI 151
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-204 |
4.44e-46 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 161.54 E-value: 4.44e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG--EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELekRNLL 76
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGidlRQIDPASL--RRQI 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFpHLTVLENLTLSpiktknftKEDA-EKKAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVAL 144
Cdd:COG2274 552 GVVLQDVFLF-SGTIRENITLG--------DPDAtDEEIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLAI 622
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDPELrlevEKLILQN---RELGMTQIVVTHDLQFAENiADTIL 204
Cdd:COG2274 623 ARALLRNPRILILDEATSALDAET----EAIILENlrrLLKGRTVIIIAHRLSTIRL-ADRII 680
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-197 |
6.82e-45 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 148.40 E-value: 6.82e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGleTID-----SGDIIYNGEELplDEL--EKR 73
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAG--TLSpafsaSGEVLLNGRRL--TALpaEQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 74 NLlGFVFQDFQLFPHLTVLENLTLS-PiktKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:COG4136 77 RI-GILFQDDLLFPHLSVGENLAFAlP---PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEP 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLIL-QNRELGMTQIVVTHDLQFAE 197
Cdd:COG4136 153 RALLLDEPFSKLDAALRAQFREFVFeQIRQRGIPALLVTHDEEDAP 198
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-204 |
7.47e-45 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 156.48 E-value: 7.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISkrF---GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELekRNL 75
Cdd:COG1132 340 IEFENVS--FsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGvdiRDLTLESL--RRQ 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQLFpHLTVLENLTLSpiktknftKEDA-EKKAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVA 143
Cdd:COG1132 416 IGVVPQDTFLF-SGTIRENIRYG--------RPDAtDEEVEEAAKAAQAHEFIEALPdgydtvvgergVNLSGGQRQRIA 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPelrlEVEKLILQN-REL--GMTQIVVTHDLQFAENiADTIL 204
Cdd:COG1132 487 IARALLKDPPILILDEATSALDT----ETEALIQEAlERLmkGRTTIVIAHRLSTIRN-ADRIL 545
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
2-201 |
8.72e-45 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 148.02 E-value: 8.72e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIisDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLlGFVFQ 81
Cdd:cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV-SMLFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAiSLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIE-VALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568064700 162 SALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:cd03298 157 AALDPALRAEMLDLVLDlHAETKMTVLMVTHQPEDAKRLAQ 197
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-201 |
8.95e-45 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 148.35 E-value: 8.95e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLG--FV 79
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGigYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRlgLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD 200
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-204 |
9.03e-45 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 148.11 E-value: 9.03e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKqILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSPIkTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAW-LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 162 SALDPELRLEVEKLIlqnRELGMTQIVV--THDLQFAENIADTIL 204
Cdd:cd03264 159 AGLDPEERIRFRNLL---SELGEDRIVIlsTHIVEDVESLCNQVA 200
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-162 |
2.03e-44 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 145.10 E-value: 2.03e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFVFQDFQLFPHLTVLENL 95
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSlRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 96 TLSPIKTKNFTKEDaEKKAISLLTRLGL----AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTS 162
Cdd:pfam00005 81 RLGLLLKGLSKREK-DARAEEALEKLGLgdlaDRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-203 |
3.62e-44 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 146.88 E-value: 3.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQ--IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFV 79
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTL-SPIKTKNFTKEDAEKKAisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03263 81 PQFDALFDELTVREHLRFyARLKGLPKSEIKEEVEL--LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 159 EPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRI 202
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-201 |
4.17e-44 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 147.49 E-value: 4.17e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-ETID----SGDIIYNGEEL-----PLDELE 71
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMnDLIPgarvEGEILLDGEDIydpdvDVVELR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRnlLGFVFQDFQLFPHlTVLENLTLSP----IKTKNFTKEDAEKKaislLTRLGLAEHV----NAYPYSLSGGQKQRVA 143
Cdd:COG1117 92 RR--VGMVFQKPNPFPK-SIYDNVAYGLrlhgIKSKSELDEIVEES----LRKAALWDEVkdrlKKSALGLSGGQQQRLC 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPELRLEVEKLIlqnRELG--MTQIVVTHDLQFAENIAD 201
Cdd:COG1117 165 IARALAVEPEVLLMDEPTSALDPISTAKIEELI---LELKkdYTIVIVTHNMQQAARVSD 221
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
32-203 |
1.29e-43 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 148.41 E-value: 1.29e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 32 IVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLlGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAE 111
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHI-NMVFQSYALFPHMTVEENVAF-GLKMRKVPRAEIK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 112 KKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELR--LEVEKLILQnRELGMTQIVV 189
Cdd:TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRdqMQLELKTIQ-EQLGITFVFV 157
|
170
....*....|....
gi 568064700 190 THDLQFAENIADTI 203
Cdd:TIGR01187 158 THDQEEAMTMSDRI 171
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-204 |
1.35e-43 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 144.12 E-value: 1.35e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFVFQ 81
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLaSLSPKELARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfphltVLENLTLSPIKTKNFTkedaekkaislltrlglaehvnaypySLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03214 81 ---------ALELLGLAHLADRPFN--------------------------ELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 162 SALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03214 126 SHLDIAHQIELLELLRRlARERGKTVVMVLHDLNLAARYADRVI 169
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-204 |
1.43e-43 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 144.71 E-value: 1.43e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQ-IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRnlLGFVFQ 81
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS--IGYVMQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 D--FQLFPHlTVLENLTLSpIKTKNFTKEDAEKkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03226 79 DvdYQLFTD-SVREELLLG-LKELDAGNEQAET----VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL 197
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-203 |
1.95e-43 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 149.48 E-value: 1.95e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK---------------QI---------ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSG 56
Cdd:COG4175 3 KIEVRNLYKIFGKRperalklldqgkskdEIlektgqtvgVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 57 DIIYNGEE---LPLDELEK--RNLLGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYP 131
Cdd:COG4175 83 EVLIDGEDitkLSKKELRElrRKKMSMVFQHFALLPHRTVLENVAF-GLEIQGVPKAERRERAREALELVGLAGWEDSYP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 132 YSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEV--EKLILQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG4175 162 DELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMqdELLELQ-AKLKKTIVFITHDLDEALRLGDRI 234
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
2-204 |
2.24e-43 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 146.14 E-value: 2.24e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF---------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK 72
Cdd:COG4167 5 LEVRNLSKTFkyrtglfrrQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDYKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 R-NLLGFVFQD--FQLFPHLTVLENLTLsPIK-TKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARA 147
Cdd:COG4167 85 RcKHIRMIFQDpnTSLNPRLNIGQILEE-PLRlNTDLTAEEREERIFATLRLVGLlPEHANFYPHMLSSGQKQRVALARA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4167 164 LILQPKIIIADEALAALDMSVRSQIINLMLElQEKLGISYIYVSQHLGIVKHISDKVL 221
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-204 |
2.04e-42 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 142.03 E-value: 2.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDElEKRNLLGFVFQ 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK--PLDI-AARNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03269 78 ERGLYPKMKVIDQL-VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL 199
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-192 |
3.15e-42 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 145.37 E-value: 3.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNL-LGF 78
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGR--VVNELEPADRdIAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK11650 81 VFQNYALYPHMSVRENMAYG-LKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 568064700 159 EPTSALDPELR----LEVEKLilqNRELGMTQIVVTHD 192
Cdd:PRK11650 160 EPLSNLDAKLRvqmrLEIQRL---HRRLKTTSLYVTHD 194
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-204 |
6.26e-42 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 142.59 E-value: 6.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG-----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLL 76
Cdd:TIGR04521 1 IKLKNVSYIYQpgtpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 ----GFVFQ--DFQLFpHLTVLENLTLSPiktKNF--TKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARA 147
Cdd:TIGR04521 81 rkkvGLVFQfpEHQLF-EETVYKDIAFGP---KNLglSEEEAEERVKEALELVGLDEEYlERSPFELSGGQMRRVAIAGV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR04521 157 LAMEPEVLILDEPTAGLDPKGRKEILDLFKRlHKEKGLTVILVTHSMEDVAEYADRVI 214
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-192 |
9.90e-42 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 140.24 E-value: 9.90e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQI-ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNL----- 75
Cdd:cd03292 1 IEFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ--DVSDLRGRAIpylrr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 -LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:cd03292 79 kIGVVFQDFRLLPDRNVYENVAF-ALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190
....*....|....*....|....*....|....*...
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHD 192
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-204 |
2.16e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 141.78 E-value: 2.16e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPldeLEKRNLLGFVF 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD---PEDRRRIGYLP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLT----LspiktKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG4152 78 EERGLYPKMKVGEQLVylarL-----KGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLI 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4152 153 LDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIV 200
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-203 |
2.30e-41 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 142.56 E-value: 2.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF-----------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDE 69
Cdd:COG4608 8 LEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDItGLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 70 LEKRNL---LGFVFQDFQ--LFPHLTV-------LENLTLSPiktknftKEDAEKKAISLLTRLGL-AEHVNAYPYSLSG 136
Cdd:COG4608 88 RELRPLrrrMQMVFQDPYasLNPRMTVgdiiaepLRIHGLAS-------KAERRERVAELLELVGLrPEHADRYPHEFSG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 137 GQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG4608 161 GQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLedLQ-DELGLTYLFISHDLSVVRHISDRV 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-203 |
5.51e-41 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 145.16 E-value: 5.51e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRnlL 76
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVrfrsPRDAQAAG--I 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLTL-SPIKTKNFTKEDA-EKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:COG1129 82 AIIHQELNLVPNLSVAENIFLgREPRRGGLIDWRAmRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 155 IGYDEPTSALDPElrlEVEKL---ILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG1129 162 LILDEPTASLTER---EVERLfriIRRLKAQGVAIIYISHRLDEVFEIADRV 210
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-204 |
5.80e-41 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 139.87 E-value: 5.80e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEElPLDE---LEKRNLL 76
Cdd:TIGR04520 1 IEVENVSFSYpeSEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLD-TLDEenlWEIRKKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQ--DFQlFPHLTV-------LENLTLSPIKTKNFTKEdaekkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARA 147
Cdd:TIGR04520 80 GMVFQnpDNQ-FVGATVeddvafgLENLGVPREEMRKRVDE--------ALKLVGMEDFRDREPHLLSGGQKQRVAIAGV 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:TIGR04520 151 LAMRPDIIILDEATSMLDPKGRKEVLETIRKlNKEEGITVISITHDMEEAVL-ADRVI 207
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-207 |
5.89e-41 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 146.79 E-value: 5.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF--GEKQI--ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPLDELE-- 71
Cdd:PRK10535 4 LLELKDIRRSYpsGEEQVevLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQdvaTLDADALAql 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLLGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEV-PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENiADTILKVQ 207
Cdd:PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIR 217
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-196 |
6.03e-41 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 139.61 E-value: 6.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFG----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL--PLDElekRn 74
Cdd:COG4525 3 MLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVtgPGAD---R- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 llGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:COG4525 79 --GVVFQKDALLPWLNVLDNVAF-GLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRF 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFA 196
Cdd:COG4525 156 LLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEA 198
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
6-204 |
6.60e-41 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 142.17 E-value: 6.60e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 6 NISKRFGEKQIisDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE------LEKRNLlGFV 79
Cdd:TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflpPEKRRI-GYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTLSpiktknFTKEDAEKKAIS---LLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:TIGR02142 81 FQEARLFPHLSVRGNLRYG------MKRARPSERRISferVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 157 YDEPTSALDPELRLEV----EKLilqNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR02142 155 MDEPLAALDDPRKYEIlpylERL---HAEFGIPILYVSHSLQEVLRLADRVV 203
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-203 |
2.90e-40 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 140.74 E-value: 2.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNlLGFVF 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP-INMMF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEP 160
Cdd:PRK11607 98 QSYALFPHMTVEQNIAFG-LKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 161 TSALDPELR----LEVEKLIlqnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK11607 177 MGALDKKLRdrmqLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRI 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-203 |
5.27e-40 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 142.47 E-value: 5.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE-LEKRNL-LGF 78
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSpRDAIALgIGM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLS--PIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG3845 85 VHQHFMLVPNLTVAENIVLGlePTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARILI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 157 YDEPTSALDPElrlEVEKL--ILQN-RELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG3845 165 LDEPTAVLTPQ---EADELfeILRRlAAEGKSIIFITHKLREVMAIADRV 211
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-204 |
8.29e-40 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 142.59 E-value: 8.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGFV 79
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSdLDPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFpHLTVLENLTLSpiktknftKEDAEKKAI-SLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARA 147
Cdd:COG4988 417 PQNPYLF-AGTIRENLRLG--------RPDASDEELeAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLALARA 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:COG4988 488 LLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILITHRLALLAQ-ADRIL 542
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-196 |
1.31e-39 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 135.29 E-value: 1.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQ----IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNL 75
Cdd:PRK10584 6 IVEVHHLKKSVGQGEhelsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhQMDEEARAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 ----LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:PRK10584 86 rakhVGFVFQSFMLIPTLNALENVEL-PALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFA 196
Cdd:PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSlNREHGTTLILVTHDLQLA 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-203 |
1.96e-39 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 134.27 E-value: 1.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEElPLDELEKRNLLGFVFQ 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS-YQKNIEALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSPiKTKNFTKEDAEKkaisLLTRLGL--AEHVNAYPYSLsgGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03268 80 APGFYPNLTARENLRLLA-RLLGIRKKRIDE----VLDVVGLkdSAKKKVKGFSL--GMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-207 |
2.21e-39 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 134.48 E-value: 2.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-----GEKQI--ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYN--GEELPLDELE 71
Cdd:COG4778 4 LLEVENLSKTFtlhlqGGKRLpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdGGWVDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLL-------GFVFQDFQLFPHLTVLEnLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVA 143
Cdd:COG4778 84 PREILalrrrtiGYVSQFLRVIPRVSALD-VVAEPLLERGVDREEARARARELLARLNLPERLwDLPPATFSGGEQQRVN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:COG4778 163 IARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDVT 226
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-201 |
3.31e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 134.34 E-value: 3.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELEKRNLlG 77
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDitgLPPHRIARLGI-G 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAI-SLLTRLglAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:COG0410 82 YVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVyELFPRL--KERRRQRAGTLSGGEQQMLAIGRALMSRPKLLL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:COG0410 160 LDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIAD 204
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-196 |
4.96e-39 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 134.17 E-value: 4.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDL----NLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDEL------ 70
Cdd:PRK11629 5 LLQCDNLCKRYQEGSVQTDVlhnvSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQ--PMSKLssaaka 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRNL-LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMM 149
Cdd:PRK11629 83 ELRNQkLGFIYQFHHLLPDFTALENVAM-PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 150 IDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFA 196
Cdd:PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGElNRLQGTAFLVVTHDLQLA 209
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-204 |
1.30e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 139.52 E-value: 1.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGF 78
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRdLDEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLTLspiktknfTKEDA-EKKAISLLTRLGLAEHVNAYPY-----------SLSGGQKQRVALAR 146
Cdd:COG4987 414 VPQRPHLF-DTTLRENLRL--------ARPDAtDEELWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERRRLALAR 484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 147 AMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:COG4987 485 ALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLAGLER-MDRIL 540
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-201 |
1.70e-38 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 133.74 E-value: 1.70e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP------LDELEKRn 74
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPamsrsrLYTVRKR- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 lLGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISL-LTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:PRK11831 86 -MSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHSTVMMkLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 154 IIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISElNSALGVTCVVVSHDVPEVLSIAD 212
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
9-203 |
8.82e-38 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 132.51 E-value: 8.82e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 9 KRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQDFQLFPH 88
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 LTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPEL 168
Cdd:TIGR01188 81 LTGRENLEMMG-RLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 169 RLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:TIGR01188 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-203 |
9.17e-38 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 130.18 E-value: 9.17e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03265 81 DLSVDDELTGWENLYIHA-RLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03265 160 IGLDPQTRAHVWEYIEKlKEEFGMTILLTTHYMEEAEQLCDRV 202
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-203 |
1.82e-36 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 133.27 E-value: 1.82e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFG----EKQIISDLNLKVPEKQILAIVGPSGGGKT----TLLRMLAGLETIDSGDIIYNGEEL-PLDELE 71
Cdd:COG4172 6 LLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLlGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNL----LGFVFQDFQ--LFPHLTV----LENLTLSpiktKNFTKEDAEKKAISLLTRLGLAE---HVNAYPYSLSGGQ 138
Cdd:COG4172 86 LRRIrgnrIAMIFQEPMtsLNPLHTIgkqiAEVLRLH----RGLSGAAARARALELLERVGIPDperRLDAYPHQLSGGQ 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 139 KQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG4172 162 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLkdLQ-RELGMALLLITHDLGVVRRFADRV 227
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
30-204 |
3.97e-36 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 128.93 E-value: 3.97e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 30 LAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLL----GFVFQD--FQLFPHLTVLENLTlSP--IK 101
Cdd:PRK11308 44 LAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLrqkiQIVFQNpyGSLNPRKKVGQILE-EPllIN 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 102 TkNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQ 178
Cdd:PRK11308 123 T-SLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMmdLQ 201
|
170 180
....*....|....*....|....*.
gi 568064700 179 nRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11308 202 -QELGLSYVFISHDLSVVEHIADEVM 226
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-207 |
4.74e-36 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 127.05 E-value: 4.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDS---------GDIIYNGEELPLDELE 71
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellGRTVQREGRLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTK-------EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVAL 144
Cdd:PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRtcfswftREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDPE-LRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPEsARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-201 |
6.69e-36 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 131.85 E-value: 6.69e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDI-IYNGEEL-------PL 67
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEWvdmtkpgPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 68 DELEKRNLLGFVFQDFQLFPHLTVLENLTLSpiKTKNFTKEDAEKKAISLLTRLGLAEH-----VNAYPYSLSGGQKQRV 142
Cdd:TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEA--IGLELPDELARMKAVITLKMVGFDEEkaeeiLDKYPDELSEGERHRV 436
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 143 ALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNR-ELGMTQIVVTHDLQFAENIAD 201
Cdd:TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAReEMEQTFIIVSHDMDFVLDVCD 496
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-196 |
1.19e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 125.97 E-value: 1.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFG-----EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKR-N 74
Cdd:COG1101 1 MLELKNLSKTFNpgtvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRaK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LLGFVFQDFQL--FPHLTVLENLTLSPIKTKNF------TKEDAE--KKAISLLtRLGLAEHVNAYPYSLSGGQKQRVAL 144
Cdd:COG1101 81 YIGRVFQDPMMgtAPSMTIEENLALAYRRGKRRglrrglTKKRRElfRELLATL-GLGLENRLDTKVGLLSGGQRQALSL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDP---ELRLEV-EKLIlqnRELGMTQIVVTHDLQFA 196
Cdd:COG1101 160 LMATLTKPKLLLLDEHTAALDPktaALVLELtEKIV---EENNLTTLMVTHNMEQA 212
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-196 |
2.40e-35 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 125.20 E-value: 2.40e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKrnllGFVF 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER----GVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEP 160
Cdd:PRK11248 77 QNEGLLPWRNVQDNVAFG-LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 161 TSALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFA 196
Cdd:PRK11248 156 FGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEA 192
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-204 |
3.14e-35 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 129.80 E-value: 3.14e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF-----------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLetIDS-GDIIYNGEelPLDE 69
Cdd:COG4172 276 LEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL--IPSeGEIRFDGQ--DLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 70 LEKRNLLGF------VFQD-FQ-LFPHLTVL----ENLTLSPIKTknfTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSG 136
Cdd:COG4172 352 LSRRALRPLrrrmqvVFQDpFGsLSPRMTVGqiiaEGLRVHGPGL---SAAERRARVAEALEEVGLdPAARHRYPHEFSG 428
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 137 GQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4172 429 GQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLrdLQ-REHGLAYLFISHDLAVVRALAHRVM 497
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-184 |
3.20e-35 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 124.19 E-value: 3.20e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF- 80
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 -QDFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03218 81 pQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180
....*....|....*....|....*
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGM 184
Cdd:cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGI 184
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-204 |
5.43e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 124.72 E-value: 5.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFG--EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLG 77
Cdd:PRK13632 7 MIKVENVSFSYPnsENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEiRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQ--DFQlFPHLTV-------LENLTLSPIKTKNFTKEDAEKkaislltrLGLAEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:PRK13632 87 IIFQnpDNQ-FIGATVeddiafgLENKKVPPKKMKDIIDDLAKK--------VGMEDYLDKEPQNLSGGQKQRVAIASVL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGM-TQIVVTHDLQFAENiADTIL 204
Cdd:PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAIL-ADKVI 213
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-201 |
6.89e-35 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 123.15 E-value: 6.89e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKqiLAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLlGFVF 80
Cdd:PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERGER--VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLEN--LTLSPiktknFTKEDAEKKAI--SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:PRK10771 78 QENNLFSHLTVAQNigLGLNP-----GLKLNAAQREKlhAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK10771 153 LDEPFSALDPALRQEMLTLVSQvCQERQLTLLMVSHSLEDAARIAP 198
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
3-207 |
7.25e-35 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 123.42 E-value: 7.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEK---QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPLDELekRNLL 76
Cdd:cd03249 2 EFKNVSFRYPSRpdvPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVdirDLNLRWL--RSQI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPhLTVLENLTLSPIKTKNFTKEDAEKKA-----ISLLTRlGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKAnihdfIMSLPD-GYDTLVGERGSQLSGGQKQRIAIARALLRN 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 152 PEIIGYDEPTSALDpelrLEVEKLI---LQNRELGMTQIVVTHDLQFAENiADTILKVQ 207
Cdd:cd03249 158 PKILLLDEATSALD----AESEKLVqeaLDRAMKGRTTIVIAHRLSTIRN-ADLIAVLQ 211
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
21-207 |
9.97e-35 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 122.28 E-value: 9.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 21 NLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELpLDELEKRNLLGFVFQDFQLFPHLTVLENLTLSPI 100
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH-TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 101 KTKNFTKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQN- 179
Cdd:TIGR01277 97 PGLKLNAEQQEK-VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLc 175
|
170 180
....*....|....*....|....*...
gi 568064700 180 RELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:TIGR01277 176 SERQRTLLMVTHHLSDARAIASQIAVVS 203
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1-194 |
1.08e-34 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 125.76 E-value: 1.08e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELkNISKRFGEKQIisDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL------EKRN 74
Cdd:PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKgiclppEKRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LlGFVFQDFQLFPHLTVLENLT--LSPIKTKNFTKedaekkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:PRK11144 78 I-GYVFQDARLFPHYKVRGNLRygMAKSMVAQFDK---------IVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 153 EIIGYDEPTSALD-P---ELRLEVEKLilqNRELGMTQIVVTHDLQ 194
Cdd:PRK11144 148 ELLLMDEPLASLDlPrkrELLPYLERL---AREINIPILYVSHSLD 190
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
13-204 |
1.24e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 124.17 E-value: 1.24e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-------LDELEKRNLLGFVFQDFQL 85
Cdd:PRK13641 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnknLKKLRKKVSLVFQFPEAQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHlTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:PRK13641 99 FEN-TVLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLiSKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 165 DPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13641 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVL 216
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
12-191 |
1.63e-34 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 121.12 E-value: 1.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL--ETIDSGDIIYNGEelPLDELEKRNLLGFVFQDFQLFPHL 89
Cdd:cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGR--PLDKRSFRKIIGYVPQDDILHPTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 90 TVLENLTLSpiktknftkedAEKKaislltrlglaehvnaypySLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELR 169
Cdd:cd03213 98 TVRETLMFA-----------AKLR-------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147
|
170 180
....*....|....*....|..
gi 568064700 170 LEVEKLILQNRELGMTQIVVTH 191
Cdd:cd03213 148 LQVMSLLRRLADTGRTIICSIH 169
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-209 |
3.13e-34 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 122.11 E-value: 3.13e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL---PLDELEKRnlLG 77
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVattPSRELAKR--LA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTlspiktknF----------TKEDAEK--KAISlltRLGLAEHVNAYPYSLSGGQKQRVALA 145
Cdd:COG4604 79 ILRQENHINSRLTVRELVA--------FgrfpyskgrlTAEDREIidEAIA---YLDLEDLADRYLDELSGGQRQRAFIA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPELRLEVEKLiLQN--RELGMTQIVVTHDLQFAENIADTIlkVQLK 209
Cdd:COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQMMKL-LRRlaDELGKTVVIVLHDINFASCYADHI--VAMK 210
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-184 |
5.72e-34 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 120.90 E-value: 5.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDeleKRNLLG 77
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDithLPMH---KRARLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 --FVFQDFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:COG1137 80 igYLPQEASIFRKLTVEDNI-LAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFI 158
|
170 180
....*....|....*....|....*....
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGM 184
Cdd:COG1137 159 LLDEPFAGVDPIAVADIQKIIRHLKERGI 187
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-207 |
6.10e-34 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 118.86 E-value: 6.10e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQ--IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGF 78
Cdd:cd03246 1 LEVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIsQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHlTVLENLtlspiktknftkedaekkaislltrlglaehvnaypysLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03246 81 LPQDDELFSG-SIAENI--------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAEnIADTILKVQ 207
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLE 169
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-203 |
7.12e-34 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 120.17 E-value: 7.12e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLL 76
Cdd:cd03266 1 MITADALTKRFRDVkktvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLT----LSPIKTKNFTKEDAEkkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEyfagLYGLKGDELTARLEE-----LADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV 206
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
2-204 |
9.52e-34 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 120.32 E-value: 9.52e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKR--NLLGFV 79
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERarAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTLSpiktknFTKEDAEKKAI------------SLLTRLGlaehvnaypYSLSGGQKQRVALARA 147
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTG------LAALPRRSRKIpdeiyelfpvlkEMLGRRG---------GDLSGGQQQQLAIARA 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRlRAEGGMAILLVEQYLDFARELADRYY 203
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-193 |
1.42e-33 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 125.55 E-value: 1.42e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQII-SDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFV 79
Cdd:TIGR02868 335 LELRDLSAGYPGAPPVlDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVsSLDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFpHLTVLENLTLSpikTKNFTKEDAEKkaisLLTRLGLAEHVNAYPY-----------SLSGGQKQRVALARAM 148
Cdd:TIGR02868 415 AQDAHLF-DTTVRENLRLA---RPDATDEELWA----ALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARAL 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDL 193
Cdd:TIGR02868 487 LADAPILLLDEPTEHLDAETADELLEDLLAALS-GRTVVLITHHL 530
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-203 |
1.80e-33 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 120.02 E-value: 1.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-----ETIDSGDIIYNGEE---LPLDELEKR 73
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDifkMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 74 nlLGFVFQDFQLFPHLTVLENLTLSPiKTKNFTKEDAE--KKAISLLTRLGLAEHV----NAYPYSLSGGQKQRVALARA 147
Cdd:PRK14247 84 --VQMVFQIPNPIPNLSIFENVALGL-KLNRLVKSKKElqERVRWALEKAQLWDEVkdrlDAPAGKLSGGQQQRLCIARA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYV 215
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-203 |
1.81e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 120.57 E-value: 1.81e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE---LEKRNLL 76
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKkslLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQ--DFQLFPHlTVLENLTLSPIKTKnFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK13639 81 GIVFQnpDDQLFAP-TVEEDVAFGPLNLG-LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV 207
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-204 |
1.87e-33 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 124.79 E-value: 1.87e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYnGEELpldelekrnLLGFVF 80
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV---------KIGYFD 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDF-QLFPHLTVLENLtlspiktKNFTKEDAEKKAISLLTRLGLA-EHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:COG0488 385 QHQeELDPDKTVLDEL-------RDGAPGGTEQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLD 457
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 159 EPTSALDPELRLEVEKLiLQNRElGmTQIVVTHDLQFAENIADTIL 204
Cdd:COG0488 458 EPTNHLDIETLEALEEA-LDDFP-G-TVLLVSHDRYFLDRVATRIL 500
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-206 |
2.11e-33 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 125.09 E-value: 2.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGFV 79
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAdADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHlTVLENLTLSpiktKNFTKEDAEKKAislLTRLGLAEHVNAYPYS-----------LSGGQKQRVALARAM 148
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLA----RPDASDAEIREA---LERAGLDEFVAALPQGldtpigeggagLSGGQAQRLALARAF 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTILKV 206
Cdd:TIGR02857 474 LRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-201 |
2.41e-33 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 119.88 E-value: 2.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-----ETIDSGDIIYNGEEL---PLDELEK 72
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIyspRTDTVDL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLGFVFQDFQLFPhLTVLEN----LTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:PRK14239 85 RKEIGMVFQQPNPFP-MSIYENvvygLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIAD 201
Cdd:PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISD 215
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-204 |
2.53e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 121.50 E-value: 2.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQ-----IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDI----IYNGEELPLDEL- 70
Cdd:PRK13631 21 ILRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELi 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 ------------EKRNLLGFVFQ--DFQLFPHlTVLENLTLSPIKTKnFTKEDAEKKAISLLTRLGLAE-HVNAYPYSLS 135
Cdd:PRK13631 101 tnpyskkiknfkELRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVALG-VKKSEAKKLAKFYLNKMGLDDsYLERSPFGLS 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 136 GGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
12-196 |
2.78e-33 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 117.91 E-value: 2.78e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE---LEKRNLLGFVFQ--DFQLF 86
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRkglLERRQRVGLVFQdpDDQLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 87 pHLTVLENLTLSPIktkNFTKEDAE-----KKAISLLTRLGLAEHVnayPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:TIGR01166 83 -AADVDQDVAFGPL---NLGLSEAEverrvREALTAVGASGLRERP---THCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFA 196
Cdd:TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-204 |
5.68e-33 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 119.11 E-value: 5.68e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL---PLDELEKRnlLG 77
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLadwSPAELARR--RA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQL-FPhLTVLE--NLTLSPiktknFTKEDAEKKAI--SLLTRLGLAEHVN-AYPySLSGGQKQRVALARAMM-- 149
Cdd:PRK13548 80 VLPQHSSLsFP-FTVEEvvAMGRAP-----HGLSRAEDDALvaAALAQVDLAHLAGrDYP-QLSGGEQQRVQLARVLAql 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 150 ----IDPEIIGYDEPTSALDPELRLEVEKLIlqnREL----GMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13548 153 wepdGPPRWLLLDEPTSALDLAHQHHVLRLA---RQLaherGLAVIVVLHDLNLAARYADRIV 212
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-203 |
7.07e-33 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.99 E-value: 7.07e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLdelekrnllgfvfq 81
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfphltvlenltLSPIktknftkeDAEKKAISLLtrlglaehvnaypYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03216 67 ---------------ASPR--------DARRAGIAMV-------------YQLSVGERQMVEIARALARNARLLILDEPT 110
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 162 SALDPElrlEVEKLILQNREL---GMTQIVVTHDLQFAENIADTI 203
Cdd:cd03216 111 AALTPA---EVERLFKVIRRLraqGVAVIFISHRLDEVFEIADRV 152
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
13-172 |
8.95e-33 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 117.76 E-value: 8.95e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL---ETIDSGDIIYNGEELPLDELEKRnlLGFVFQDFQLFPHL 89
Cdd:cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRvegGGTTSGQILFNGQPRKPDQFQKC--VAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 90 TVLENLTLSPIKTKNFTKEDAEKK---AISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDP 166
Cdd:cd03234 97 TVRETLTYTAILRLPRKSSDAIRKkrvEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
....*.
gi 568064700 167 ELRLEV 172
Cdd:cd03234 177 FTALNL 182
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
17-204 |
9.50e-33 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 120.20 E-value: 9.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRNLLGFVFQD--FQLFPHLT 90
Cdd:PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLlgmkDDEWRAVRSDIQMIFQDplASLNPRMT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 91 VLEnLTLSPIKT--KNFTKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPE 167
Cdd:PRK15079 117 IGE-IIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLLPNLiNRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195
|
170 180 190
....*....|....*....|....*....|....*....
gi 568064700 168 LRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK15079 196 IQAQVVNLLqqLQ-REMGLSLIFIAHDLAVVKHISDRVL 233
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-203 |
2.01e-32 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 117.64 E-value: 2.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETID-----------SGDIIYNGEelpLDEL 70
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvegevrlFGRNIYSPD---VDPI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRNLLGFVFQDFQLFPHLTVLENLTLSpIKTKNF--TKEDAEKKAISLLTRLGLAEHV----NAYPYSLSGGQKQRVAL 144
Cdd:PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLvkSKKELDERVEWALKKAALWDEVkdrlNDYPSNLSGGQRQRLVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYV 218
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-201 |
2.69e-32 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 117.58 E-value: 2.69e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-ETIDS----GDIIYNGEEL---PLDELEKR 73
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLnDLIPGfrveGKVTFHGKNLyapDVDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 74 NLLGFVFQDFQLFPHlTVLENLTLSPikTKNFTKEDAEKKAISLLTRLGLAEHV----NAYPYSLSGGQKQRVALARAMM 149
Cdd:PRK14243 91 RRIGMVFQKPNPFPK-SIYDNIAYGA--RINGYKGDMDELVERSLRQAALWDEVkdklKQSGLSLSGGQQQRLCIARAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 150 IDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIAD 201
Cdd:PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSD 218
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-206 |
2.91e-32 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 117.01 E-value: 2.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFV- 79
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 -FQDFQLFPHLTVLENLTLSP------------IKTKNFTKEDAEK--KAISLLTRLGLAEHVNAYPYSLSGGQKQRVAL 144
Cdd:PRK11300 85 tFQHVRLFREMTVIENLLVAQhqqlktglfsglLKTPAFRRAESEAldRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTILKV 206
Cdd:PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAElRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-208 |
4.09e-32 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 116.34 E-value: 4.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIY-NGEEL---PLDELEKRnlL 76
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVRlFGERRggeDVWELRKR--I 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLF--PHLTVLE----NLTLSPIKTKNFTKEDaEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMI 150
Cdd:COG1119 81 GLVSPALQLRfpRDETVLDvvlsGFFDSIGLYREPTDEQ-RERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIV-VTHDLqfaENIADTILKVQL 208
Cdd:COG1119 160 DPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVlVTHHV---EEIPPGITHVLL 215
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-204 |
6.31e-32 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 120.55 E-value: 6.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIyngeelpldeLEKRNLLGFVFQDF 83
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVS----------IPKGLRIGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 84 QLFPHLTVLENL-----TLSPIKTK--------NFTKEDAEK------------------KAISLLTRLGLAEHVNAYPY 132
Cdd:COG0488 71 PLDDDLTVLDTVldgdaELRALEAEleeleaklAEPDEDLERlaelqeefealggweaeaRAEEILSGLGFPEEDLDRPV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 133 S-LSGGQKQRVALARAMMIDPEIIGYDEPTSALDpelrLE-VEKL--ILQNRELGMtqIVVTHDLQFAENIADTIL 204
Cdd:COG0488 151 SeLSGGWRRRVALARALLSEPDLLLLDEPTNHLD----LEsIEWLeeFLKNYPGTV--LVVSHDRYFLDRVATRIL 220
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
13-204 |
7.59e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 116.66 E-value: 7.59e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYnGEELPLDELEKRNL------LGFVFQ--DFQ 84
Cdd:PRK13634 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLkplrkkVGIVFQfpEHQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 85 LFPHlTVLENLTLSPIktkNF--TKEDAEKKAISLLTRLGLAEHVNAY-PYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PRK13634 98 LFEE-TVEKDICFGPM---NFgvSEEDAKQKAREMIELVGLPEELLARsPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 162 SALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13634 174 AGLDPKGRKEMMEMFYKlHKEKGLTTVLVTHSMEDAARYADQIV 217
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
3-204 |
9.81e-32 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 115.02 E-value: 9.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEK-QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFVF 80
Cdd:cd03254 4 EFENVNFSYDEKkPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIrDISRKSLRSMIGVVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHlTVLENLTLSpikTKNFTKED-----AEKKAISLLTRL--GLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:cd03254 84 QDTFLFSG-TIMENIRLG---RPNATDEEvieaaKEAGAHDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 154 IIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKIL 208
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-204 |
1.09e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 115.60 E-value: 1.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL---PLDELEKRnlLG 77
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLaawSPWELARR--RA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQL-FPhLTVLE--NLTLSPiktknFTKEDAEKKAISL--LTRLGLAEHVN-AYPySLSGGQKQRVALARAM--- 148
Cdd:COG4559 79 VLPQHSSLaFP-FTVEEvvALGRAP-----HGSSAAQDRQIVReaLALVGLAHLAGrSYQ-TLSGGEQQRVQLARVLaql 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 149 ---MIDPEiiGY---DEPTSALDPELRLEVEKLIlqnREL---GMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4559 152 wepVDGGP--RWlflDEPTSALDLAHQHAVLRLA---RQLarrGGGVVAVLHDLNLAAQYADRIL 211
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-193 |
1.33e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 115.98 E-value: 1.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQ---IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL-EKRNLL 76
Cdd:PRK13650 4 IIEVKNLTFKYKEDQekyTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVwDIRHKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQ--DFQlFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK13650 84 GMVFQnpDNQ-FVGATVEDDVAFG-LENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRE-LGMTQIVVTHDL 193
Cdd:PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDdYQMTVISITHDL 201
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-201 |
3.56e-31 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 115.29 E-value: 3.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTlspIKTKNFTKEDAEKKAI--SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK13537 88 FDNLDPDFTVRENLL---VFGRYFGLSAAAARALvpPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 160 PTSALDPELR-LEVEKLilqnREL---GMTQIVVTHDLQFAENIAD 201
Cdd:PRK13537 165 PTTGLDPQARhLMWERL----RSLlarGKTILLTTHFMEEAERLCD 206
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-204 |
4.13e-31 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 113.33 E-value: 4.13e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRnllgFVFQDFQLFPHLTVLENLT 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM----VVFQNYSLLPWLTVRENIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 97 LSpIKTKNFTKEDAEKKAI--SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEV-E 173
Cdd:TIGR01184 77 LA-VDRVLPDLSKSERRAIveEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLqE 155
|
170 180 190
....*....|....*....|....*....|.
gi 568064700 174 KLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVV 186
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-204 |
4.52e-31 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 113.48 E-value: 4.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQ--IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELekRNLL 76
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGhdvRDYTLASL--RRQI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFpHLTVLENLTlspiktknFTKEDAEKKAISLLTRLGLA-EHVNAYP-----------YSLSGGQKQRVAL 144
Cdd:cd03251 79 GLVSQDVFLF-NDTVAENIA--------YGRPGATREEVEEAARAANAhEFIMELPegydtvigergVKLSGGQRQRIAI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDpelrLEVEKLI---LQNRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03251 150 ARALLKDPPILILDEATSALD----TESERLVqaaLERLMKNRTTFVIAHRLSTIEN-ADRIV 207
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-204 |
2.55e-30 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 111.55 E-value: 2.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISkrFG---EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPLDELEKRnl 75
Cdd:cd03253 1 IEFENVT--FAydpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQdirEVTLDSLRRA-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQLFpHLTVLENLTLSPIKTKNFTKEDAEKKAIslltrlgLAEHVNAYP--YS---------LSGGQKQRVAL 144
Cdd:cd03253 77 IGVVPQDTVLF-NDTIGYNIRYGRPDATDEEVIEAAKAAQ-------IHDKIMRFPdgYDtivgerglkLSGGEKQRVAI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDpelrLEVEKLILQN-REL--GMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03253 149 ARAILKNPPILLLDEATSALD----THTEREIQAAlRDVskGRTTIVIAHRLSTIVN-ADKII 206
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-204 |
4.09e-30 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 112.03 E-value: 4.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGeeLPLDE---LEKRNLL 76
Cdd:PRK13635 6 IRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG--MVLSEetvWDVRRQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQ--DFQlFPHLTV-------LENLTLSpiktknftKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARA 147
Cdd:PRK13635 84 GMVFQnpDNQ-FVGATVqddvafgLENIGVP--------REEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQlKEQKGITVLSITHDLDEAAQ-ADRVI 211
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
2-203 |
4.22e-30 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 110.57 E-value: 4.22e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKrnlLGFVFQ 81
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK---IGSLIE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTlspIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLsgGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:TIGR03740 78 SPPLYENLTARENLK---VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSL--GMKQRLGIAIALLNHPKLLILDEPT 152
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 162 SALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHI 194
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-207 |
6.16e-30 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 111.42 E-value: 6.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEK---------QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELE 71
Cdd:PRK15112 4 LLEVRNLSKTFRYRtgwfrrqtvEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNL-LGFVFQD--FQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARA 147
Cdd:PRK15112 84 YRSQrIRMIFQDpsTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQNREL-GMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:PRK15112 164 LILRPKVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMH 224
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-203 |
1.47e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 110.14 E-value: 1.47e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 6 NISKRF---GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-ETIDS-----GDIIYNGEEL-PLDELEKRNL 75
Cdd:PRK14246 12 NISRLYlyiNDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLiEIYDSkikvdGKVLYFGKDIfQIDAIKLRKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAIS-LLTRLGLAEHV----NAYPYSLSGGQKQRVALARAMMI 150
Cdd:PRK14246 92 VGMVFQQPNPFPHLSIYDNIAY-PLKSHGIKEKREIKKIVEeCLRKVGLWKEVydrlNSPASQLSGGQQQRLTIARALAL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYV 222
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-201 |
2.03e-29 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 111.46 E-value: 2.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLTlspIKTKNFTKEDAEKKAI--SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK13536 122 FDNLDLEFTVRENLL---VFGRYFGMSTREIEAVipSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 160 PTSALDPELR-LEVEKLilqnREL---GMTQIVVTHDLQFAENIAD 201
Cdd:PRK13536 199 PTTGLDPHARhLIWERL----RSLlarGKTILLTTHFMEEAERLCD 240
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-203 |
2.25e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 109.44 E-value: 2.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNL-LGF 78
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTgLDEHEIARLgIGR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTKN-----FTKEDAEKKA--ISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:COG4674 90 KFQKPTVFEELTVFENLELALKGDRGvfaslFARLTAEERDriEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:COG4674 170 PKLLLLDEPVAGMTDAETERTAELLKSLAG-KHSVVVVEHDMEFVRQIARKV 220
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-207 |
2.80e-29 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 112.05 E-value: 2.80e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELE----KRNLLGFVFQDFQLFPHLTV 91
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkISDAElrevRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 92 LENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLE 171
Cdd:PRK10070 124 LDNTAFG-MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 172 VE-KLILQNRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:PRK10070 203 MQdELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
12-204 |
3.95e-29 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 113.30 E-value: 3.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELplDELEKRNL---LGFVFQDFQLFPH 88
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL--SQWDREELgrhIGYLPQDVELFDG 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 lTVLENLTLspiktknFTKEDAEK--KA---------ISLL-----TRLGLAEHVnaypysLSGGQKQRVALARAMMIDP 152
Cdd:COG4618 421 -TIAENIAR-------FGDADPEKvvAAaklagvhemILRLpdgydTRIGEGGAR------LSGGQRQRIGLARALYGDP 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQfAENIADTIL 204
Cdd:COG4618 487 RLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS-LLAAVDKLL 537
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-194 |
4.31e-29 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 108.44 E-value: 4.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELEKRNLlGF 78
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDislLPLHARARRGI-GY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162
|
170 180 190
....*....|....*....|....*....|....*.
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQ 194
Cdd:PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198
|
|
| F420-0_ABC_ATP |
TIGR03873 |
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ... |
2-204 |
4.71e-29 |
|
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Pssm-ID: 163585 [Multi-domain] Cd Length: 256 Bit Score: 108.75 E-value: 4.71e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFVF 80
Cdd:TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLhGLSRRARARRVALVE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTLSPIKTKNF----TKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLwagdSPHDAAV-VDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV 208
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-193 |
4.94e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 109.79 E-value: 4.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEK-----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE-----------EL 65
Cdd:PRK13651 3 IKVKNIVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKdeknkkktkekEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 66 PLDEL--------------EKRNLLGFVFQ--DFQLFPHlTVLENLTLSPIkTKNFTKEDAEKKAISLLTRLGLAE-HVN 128
Cdd:PRK13651 83 VLEKLviqktrfkkikkikEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPV-SMGVSKEEAKKRAAKYIELVGLDEsYLQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 129 AYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDL 193
Cdd:PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
13-203 |
8.15e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 108.68 E-value: 8.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-----RNLLGFVFQ--DFQL 85
Cdd:PRK13649 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKdikqiRKKVGLVFQfpESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHlTVLENLTLSPiktKNF--TKEDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTS 162
Cdd:PRK13649 99 FEE-TVLKDVAFGP---QNFgvSQEEAEALAREKLALVGISESLfEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568064700 163 ALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13649 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFV 215
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-191 |
1.71e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 106.13 E-value: 1.71e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQI--ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGF 78
Cdd:cd03245 3 IEFRNVSFSYPNQEIpaLDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIrQLDPADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLTLS-PIKTKNFTKEDAEKKAISLLTRL---GLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:cd03245 83 VPQDVTLF-YGTLRDNITLGaPLADDERILRAAELAGVTDFVNKhpnGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 568064700 155 IGYDEPTSALDpeLRLEvEKLILQNREL--GMTQIVVTH 191
Cdd:cd03245 162 LLLDEPTSAMD--MNSE-ERLKERLRQLlgDKTLIIITH 197
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-204 |
5.45e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 106.36 E-value: 5.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFV 79
Cdd:PRK13647 5 IEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVnAENEKWVRSKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQD--FQLFPhLTVLENLTLSPIKTKnFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:PRK13647 85 FQDpdDQVFS-STVWDDVAFGPVNMG-LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 158 DEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI 209
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-193 |
5.73e-28 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 104.96 E-value: 5.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELplDELEKRNL---- 75
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI--TRLKNREVpflr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 --LGFVFQDFQLFPHLTVLENLTLsPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:PRK10908 79 rqIGMIFQDHHLLMDRTVYDNVAI-PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 154 IIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDL 193
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-201 |
9.03e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 105.95 E-value: 9.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 6 NISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETI-----DSGDIIYNGEEL--PLDELEKRNLLGF 78
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIfnYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPhLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGL----AEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK14271 106 LFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 155 IGYDEPTSALDPELRLEVEKLI--LQNRelgMTQIVVTHDLQFAENIAD 201
Cdd:PRK14271 185 LLLDEPTSALDPTTTEKIEEFIrsLADR---LTVIIVTHNLAQAARISD 230
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-203 |
1.02e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.66 E-value: 1.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL-EKRNLLGF 78
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIrEVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQ--DFQLFPHlTVLENLTLSPIKTkNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:PRK13652 83 VFQnpDDQIFSP-TVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 157 YDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13652 161 LDEPTAGLDPQGVKELIDFLNDlPETYGMTVIFSTHQLDLVPEMADYI 208
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
19-203 |
1.40e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 105.59 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 19 DLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-----ETIDSGDIIYNGEELPLDELEKRNLLGFVFQ--DFQLFPHlTV 91
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLlqpteGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQfpESQLFEE-TV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 92 LENLTLSPiktKNF--TKEDAEKKAISLLTRLGLA-EHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPEL 168
Cdd:PRK13643 103 LKDVAFGP---QNFgiPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 169 RLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYV 214
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-201 |
1.86e-27 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 108.35 E-value: 1.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETI--DSGDIIYN----------------GE 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYepTSGRIIYHvalcekcgyverpskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 64 ELP---------------LDELEKRNL---LGFVFQ-DFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLA 124
Cdd:TIGR03269 81 PCPvcggtlepeevdfwnLSDKLRRRIrkrIAIMLQrTFALYGDDTVLDNV-LEALEEIGYEGKEAVGRAVDLIEMVQLS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 125 EHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQN-RELGMTQIVVTHDLQFAENIAD 201
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEVIEDLSD 237
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-197 |
4.11e-27 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 104.00 E-value: 4.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF---------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELE 71
Cdd:PRK10419 3 LLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE--PLAKLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 KRNLLGF------VFQDF--QLFPHLTV-------LENLTlspiktkNFTKEDAEKKAISLLTRLGLA-EHVNAYPYSLS 135
Cdd:PRK10419 81 RAQRKAFrrdiqmVFQDSisAVNPRKTVreiirepLRHLL-------SLDKAERLARASEMLRAVDLDdSVLDKRPPQLS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 136 GGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAE 197
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLkkLQ-QQFGTACLFITHDLRLVE 216
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-193 |
5.75e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 103.77 E-value: 5.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDE-----LEKRN 74
Cdd:PRK13636 5 ILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK--PIDYsrkglMKLRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LLGFVFQ--DFQLFPhLTVLENLTLSPIKTKnFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:PRK13636 83 SVGMVFQdpDNQLFS-ASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 153 EIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDL 193
Cdd:PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEmQKELGLTIIIATHDI 202
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-193 |
7.14e-27 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 101.16 E-value: 7.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 10 RFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPldelekrnllGFVFQDFQL---F 86
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARV----------AYVPQRSEVpdsL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 87 PhLTVLENLTL---SPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:NF040873 71 P-LTVRDLVAMgrwARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190
....*....|....*....|....*....|
gi 568064700 164 LDPELRLEVEKLILQNRELGMTQIVVTHDL 193
Cdd:NF040873 150 LDAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-191 |
8.64e-27 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 101.49 E-value: 8.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL-EKRNLLGfv 79
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVaEACHYLG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFqLFPHLTVLENLTLspikTKNFtKEDAEKKAISLLTRLGLAeHVNAYPY-SLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK13539 80 HRNA-MKPALTVAENLEF----WAAF-LGGEELDIAAALEAVGLA-PLAHLPFgYLSAGQKRRVALARLLVSNRPIWILD 152
|
170 180 190
....*....|....*....|....*....|...
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:PRK13539 153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-204 |
1.35e-26 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 101.79 E-value: 1.35e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG--EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGF 78
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWlRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLTLSPIKTKNFTKEDAEKKA-----ISLLtRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:cd03252 81 VLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAgahdfISEL-PEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 154 IIGYDEPTSALDpelrLEVEKLILQNRE---LGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03252 159 ILIFDEATSALD----YESEHAIMRNMHdicAGRTVIIIAHRLSTVKN-ADRII 207
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-201 |
2.62e-26 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 101.63 E-value: 2.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNL---LG 77
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK--PISMLSSRQLarrLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQdfqlfpHLTVLENLTL--------SPIKT--KNFTKEDaEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARA 147
Cdd:PRK11231 80 LLPQ------HHLTPEGITVrelvaygrSPWLSlwGRLSAED-NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 148 MMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCD 206
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-167 |
7.28e-26 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 98.97 E-value: 7.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGFVF 80
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAeQRDEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDfQLFPHLTVLENLTlspiktknFTKED--AEKKAIS-LLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:TIGR01189 81 LP-GLKPELSALENLH--------FWAAIhgGAQRTIEdALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWIL 151
|
170
....*....|
gi 568064700 158 DEPTSALDPE 167
Cdd:TIGR01189 152 DEPTTALDKA 161
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-192 |
7.80e-26 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 99.40 E-value: 7.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFV 79
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIsTLKPEIYRQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHlTVLENLTLsPIKTKNFTKEdaEKKAISLLTRLGLAEHVNAYPYS-LSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK10247 87 AQTPTLFGD-TVYDNLIF-PWQIRNQQPD--PAIFLDDLERFALPDTILTKNIAeLSGGEKQRISLIRNLQFMPKVLLLD 162
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 159 EPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHD 192
Cdd:PRK10247 163 EITSALDESNKHNVNEIIHRyVREQNIAVLWVTHD 197
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-203 |
9.29e-26 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 102.61 E-value: 9.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGFV 79
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQL---FPHLTVLEnLTLSPIKTKNFTKEDAEKKAI-SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:PRK09536 83 PQDTSLsfeFDVRQVVE-MGRTPHRSRFDTWTETDRAAVeRAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDEL 209
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
2-191 |
1.05e-25 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 99.76 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE--TIDSGDIIYNGE---ELPLDElekRNLL 76
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEdilELSPDE---RARA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GfVFQDFQL---FPHLTVLENLT--LSPIKTKNFTKEDAEKKAISLLTRLGLAE-----HVNAypySLSGGQKQRVALAR 146
Cdd:COG0396 78 G-IFLAFQYpveIPGVSVSNFLRtaLNARRGEELSAREFLKLLKEKMKELGLDEdfldrYVNE---GFSGGEKKRNEILQ 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 147 AMMIDPEIIGYDEPTSALDPE-LRLeVEKLILQNRELGMTQIVVTH 191
Cdd:COG0396 154 MLLLEPKLAILDETDSGLDIDaLRI-VAEGVNKLRSPDRGILIITH 198
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
28-200 |
1.08e-25 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 103.78 E-value: 1.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 28 QILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELEK-RNLLGFVFQD--FQLFPHLTVLENLtLSPIK 101
Cdd:PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRidtLSPGKLQAlRRDIQFIFQDpyASLDPRQTVGDSI-MEPLR 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 102 TKNFTKEDAEKKAIS-LLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ- 178
Cdd:PRK10261 430 VHGLLPGKAAAARVAwLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDl 509
|
170 180
....*....|....*....|..
gi 568064700 179 NRELGMTQIVVTHDLQFAENIA 200
Cdd:PRK10261 510 QRDFGIAYLFISHDMAVVERIS 531
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-208 |
1.27e-25 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 98.34 E-value: 1.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLL--- 76
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIrRQRDEYHQDLLylg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 ---GfvfqdfqLFPHLTVLENLT-LSPIktKNFTKEDAekkAISLLTRLGLA--EHVNAypYSLSGGQKQRVALARAMMI 150
Cdd:PRK13538 81 hqpG-------IKTELTALENLRfYQRL--HGPGDDEA---LWEALAQVGLAgfEDVPV--RQLSAGQQRRVALARLWLT 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHdlQFAENIADTILKVQL 208
Cdd:PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH--QDLPVASDKVRKLRL 202
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
13-204 |
1.47e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.12 E-value: 1.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG-----EELPLDELEKRnlLGFVFQ--DFQL 85
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvditdKKVKLSDIRKK--VGLVFQypEYQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHlTVLENLTLSPiKTKNFTKEDAEKKAISLLTRLGLA--EHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:PRK13637 97 FEE-TIEKDIAFGP-INLGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 164 LDPELRLEV-EKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13637 175 LDPKGRDEIlNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
13-204 |
3.69e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 99.10 E-value: 3.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGD---IIYNGEELPLDEL-EKRNLLGFVFQ--DFQlF 86
Cdd:PRK13640 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAKTVwDIREKVGIVFQnpDNQ-F 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 87 PHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDP 166
Cdd:PRK13640 98 VGATVGDDVAFG-LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
|
170 180 190
....*....|....*....|....*....|....*....
gi 568064700 167 ELRLEVEKLILQ-NRELGMTQIVVTHDLQFAeNIADTIL 204
Cdd:PRK13640 177 AGKEQILKLIRKlKKKNNLTVISITHDIDEA-NMADQVL 214
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-205 |
4.23e-25 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 101.78 E-value: 4.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LD-ELEKRNLLGF 78
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNkLDhKLAAQLGIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTKNFTK------EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGvniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568064700 153 EIIGYDEPTSALDPElrlEVEKLIL---QNRELGMTQIVVTHDLQFAENIAD--TILK 205
Cdd:PRK09700 165 KVIIMDEPTSSLTNK---EVDYLFLimnQLRKEGTAIVYISHKLAEIRRICDryTVMK 219
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1-204 |
5.05e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 96.35 E-value: 5.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKrfgeKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF 80
Cdd:cd03215 4 VLEVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 -----QDFQLFPHLTVLENLTLspiktknftkedaekkaislltrlglaehvnayPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:cd03215 80 vpedrKREGLVLDLSVAENIAL---------------------------------SSLLSGGNQQKVVLARWLARDPRVL 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03215 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL 175
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
6-165 |
6.45e-25 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 101.49 E-value: 6.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 6 NISKRFGEKQIISDLNLKVPEK-------------QILAIVGPSGGGKTTLLRMLAGLETIDS--GDIIYNGEElPLDEL 70
Cdd:PLN03211 60 NIKRILGHKPKISDETRQIQERtilngvtgmaspgEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRK-PTKQI 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRnlLGFVFQDFQLFPHLTVLENLTLSPIK--TKNFTKEDAEKKAISLLTRLGLA--EHV---NAYPYSLSGGQKQRVA 143
Cdd:PLN03211 139 LKR--TGFVTQDDILYPHLTVRETLVFCSLLrlPKSLTKQEKILVAESVISELGLTkcENTiigNSFIRGISGGERKRVS 216
|
170 180
....*....|....*....|..
gi 568064700 144 LARAMMIDPEIIGYDEPTSALD 165
Cdd:PLN03211 217 IAHEMLINPSLLILDEPTSGLD 238
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-207 |
6.92e-25 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 94.82 E-value: 6.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNgeelpldeleKRNLLGFVFQ 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG----------STVKIGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfphltvlenltlspiktknftkedaekkaislltrlglaehvnaypysLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:cd03221 71 ----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 162 SALDPELRLEVEKLIlqnRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:cd03221 99 NHLDLESIEALEEAL---KEYPGTVILVSHDRYFLDQVATKIIELE 141
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
12-191 |
8.65e-25 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 100.89 E-value: 8.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELplDELEKRNL---LGFVFQDFQLFPH 88
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL--KQWDRETFgkhIGYLPQDVELFPG 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 lTVLENLTlspiktkNFTkEDAEKKAISLLTRL-GLAEHVNAYP--Y---------SLSGGQKQRVALARAMMIDPEIIG 156
Cdd:TIGR01842 407 -TVAENIA-------RFG-ENADPEKIIEAAKLaGVHELILRLPdgYdtvigpggaTLSGGQRQRIALARALYGDPKLVV 477
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
2-191 |
8.68e-25 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 101.10 E-value: 8.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQI--ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNLLGF 78
Cdd:TIGR03375 464 IEFRNVSFAYPGQETpaLDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIrQIDPADLRRNIGY 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLTLSpiktkNFTKEDAEkkAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARA 147
Cdd:TIGR03375 544 VPQDPRLF-YGTLRDNIALG-----APYADDEE--ILRAAELAGVTEFVRRHPdgldmqigergRSLSGGQRQAVALARA 615
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 148 MMIDPEIIGYDEPTSALDpelrLEVEKLILQN--REL-GMTQIVVTH 191
Cdd:TIGR03375 616 LLRDPPILLLDEPTSAMD----NRSEERFKDRlkRWLaGKTLVLVTH 658
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-204 |
1.07e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 97.85 E-value: 1.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDE--LEK 72
Cdd:PRK13633 4 MIKCKNVSYKYesneesTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEnlWDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLGFVFQ--DFQLFPhlTVLE--------NLTLSPiktknftkEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRV 142
Cdd:PRK13633 84 RNKAGMVFQnpDNQIVA--TIVEedvafgpeNLGIPP--------EEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 143 ALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKElNKKYGITIILITHYMEEAVE-ADRII 215
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-193 |
1.15e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 97.51 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLG 77
Cdd:PRK13648 7 IIVFKNVSFQYqsDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKlRKHIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQ--DFQlFPHLTV-------LENLTLSpiktknftKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:PRK13648 87 IVFQnpDNQ-FVGSIVkydvafgLENHAVP--------YDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDL 193
Cdd:PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKvKSEHNITIISITHDL 203
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-204 |
2.59e-24 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 94.30 E-value: 2.59e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE--KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFV 79
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFphltvlenltlspiktknftkedaekkAISLLTRLGLaehvnaypySLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03247 81 NQRPYLF---------------------------DTTLRNNLGR---------RFSGGERQRLALARILLQDAPIVLLDE 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 160 PTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03247 125 PTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIEH-MDKIL 167
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
4-204 |
2.90e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 97.00 E-value: 2.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEK-----QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-----LDELEK- 72
Cdd:PRK13645 9 LDNVSYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPanlkkIKEVKRl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 73 RNLLGFVFQ--DFQLFPHlTVLENLTLSPIKTKNfTKEDAEKKAISLLTRLGLA-EHVNAYPYSLSGGQKQRVALARAMM 149
Cdd:PRK13645 89 RKEIGLVFQfpEYQLFQE-TIEKDIAFGPVNLGE-NKQEAYKKVPELLKLVQLPeDYVKRSPFELSGGQKRRVALAGIIA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 150 IDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERlNKEYKKRIIMVTHNMDQVLRIADEVI 222
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-203 |
4.32e-24 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 99.01 E-value: 4.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKT-TLLRMLAGLET----IDSGDIIYNGEE-LPLDEL 70
Cdd:PRK15134 5 LLAIENLSVAFrqqqTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSppvvYPSGDIRFHGESlLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRNLLG----FVFQD--FQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGL---AEHVNAYPYSLSGGQKQR 141
Cdd:PRK15134 85 TLRGVRGnkiaMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIrqaAKRLTDYPHQLSGGERQR 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 142 VALARAMMIDPEIIGYDEPTSALDpelrLEVEKLILQ-----NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK15134 165 VMIAMALLTRPELLIADEPTTALD----VSVQAQILQllrelQQELNMGLLFITHNLSIVRKLADRV 227
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-203 |
4.77e-24 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 98.71 E-value: 4.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDS--GDIIYNGEELPLDELEKRNLLGF 78
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEVCRFKDIRDSEALGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VF--QDFQLFPHLTVLENLTLS-PIKTKNFTK-EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:NF040905 81 VIihQELALIPYLSIAENIFLGnERAKRGVIDwNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 155 IGYDEPTSAL---DPELRLEvekLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:NF040905 161 LILDEPTAALneeDSAALLD---LLLELKAQGITSIIISHKLNEIRRVADSI 209
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-194 |
9.07e-24 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 97.85 E-value: 9.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 5 KNISKR-FGEKQIISDLNLKVPEKQILAIVGPSGGGKTT----LLRMLAGletidSGDIIYNGEelPLDELEKRNLLGF- 78
Cdd:PRK15134 289 KGILKRtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINS-----QGEIWFDGQ--PLHNLNRRQLLPVr 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 -----VFQD--FQLFPHLTVL----ENLTlspIKTKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALAR 146
Cdd:PRK15134 362 hriqvVFQDpnSSLNPRLNVLqiieEGLR---VHQPTLSAAQREQQVIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIAR 438
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 147 AMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQNRElGMTQIVVTHDLQ 194
Cdd:PRK15134 439 ALILKPSLIILDEPTSSLDKTVQAQILALLksLQQKH-QLAYLFISHDLH 487
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-203 |
9.75e-24 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 98.55 E-value: 9.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGE--KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQ 81
Cdd:TIGR01257 931 VKNLVKIFEPsgRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLtLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:TIGR01257 1011 HNILFHHLTVAEHI-LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 162 SALDPELRLEVEKLILQNRElGMTQIVVTHDLQFAENIADTI 203
Cdd:TIGR01257 1090 SGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRI 1130
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-204 |
1.95e-23 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 94.03 E-value: 1.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngeelpldELEKRNLLGFVF 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI----------KRNGKLRIGYVP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPH--LTVLENLTLSPiktkNFTKEDaekkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK09544 74 QKLYLDTTlpLTVNRFLRLRP----GTKKED----ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 159 EPTSALDPELRLEVEKLILQNR-ELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQLRrELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
8-191 |
3.28e-23 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 96.65 E-value: 3.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 8 SKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETID---SGDIIYNGEELPLDELEKRNllGFVFQDFQ 84
Cdd:TIGR00955 32 CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKEMRAIS--AYVQQDDL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 85 LFPHLTVLENLTLSP-IKTKNFTKEDAEKKAIS-LLTRLGLAEHVN------AYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:TIGR00955 110 FIPTLTVREHLMFQAhLRMPRRVTKKEKRERVDeVLQALGLRKCANtrigvpGRVKGLSGGERKRLAFASELLTDPPLLF 189
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 157 YDEPTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
4-204 |
3.29e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 92.78 E-value: 3.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKR-FGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGeELPLDELEK-RNLLGFVF- 80
Cdd:cd03267 23 LKSLFKRkYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKRRKKfLRRIGVVFg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTLspIKTKNFTKEDAEKKAISLLTR-LGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:cd03267 102 QKTQLWWDLPVIDSFYL--LAAIYDLPPARFKKRLDELSElLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 160 PTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03267 180 PTIGLDVVAQENIRNFLKEyNRERGTTVLLTSHYMKDIEALARRVL 225
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-205 |
8.38e-23 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 94.98 E-value: 8.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPL----DELEKRnlLG 77
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFasttAALAAG--VA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQLFPHLTVLENLTLS--PIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:PRK11288 83 IIYQELHLVPEMTVAENLYLGqlPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 156 GYDEPTSALDPElrlEVEKL---ILQNRELGMTQIVVTHDLQ--FAENIADTILK 205
Cdd:PRK11288 163 AFDEPTSSLSAR---EIEQLfrvIRELRAEGRVILYVSHRMEeiFALCDAITVFK 214
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-204 |
8.51e-23 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 92.30 E-value: 8.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE------LPLDELEKRN 74
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgqlrdlYALSEAERRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LL----GFVFQDFQ--LFPHLTVLENL--TLSPIKTKNFtkEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALA 145
Cdd:PRK11701 86 LLrtewGFVHQHPRdgLRMQVSAGGNIgeRLMAVGARHY--GDIRATAGDWLERVEIdAARIDDLPTTFSGGMQQRLQIA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlVRELGLAVVIVTHDLAVARLLAHRLL 223
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
13-204 |
9.71e-23 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 95.17 E-value: 9.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNL---LGFVFQDFQLFPHl 89
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV--PLVQYDHHYLhrqVALVGQEPVLFSG- 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 90 TVLENLTLSPIKTKNFTKEDAEKKA-----ISLLTRlGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:TIGR00958 570 SVRENIAYGLTDTPDEEIMAAAKAAnahdfIMEFPN-GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568064700 165 DpelrLEVEKLILQNREL-GMTQIVVTHDLQFAENiADTIL 204
Cdd:TIGR00958 649 D----AECEQLLQESRSRaSRTVLLIAHRLSTVER-ADQIL 684
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
14-204 |
1.12e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 94.91 E-value: 1.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 14 KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIdSGDIIYNGEEL-PLDELEKRNLLGFVFQDFQLFpHLTVL 92
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELrELDPESWRKHLSWVGQNPQLP-HGTLR 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 93 ENLTLSpiktknftKEDAEKKAI-SLLTRLGLAEHVNAYPY-----------SLSGGQKQRVALARAMMIDPEIIGYDEP 160
Cdd:PRK11174 441 DNVLLG--------NPDASDEQLqQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568064700 161 TSALDpelrLEVEKLILQ--NRE-LGMTQIVVTHDLQFAENIaDTIL 204
Cdd:PRK11174 513 TASLD----AHSEQLVMQalNAAsRRQTTLMVTHQLEDLAQW-DQIW 554
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-204 |
1.31e-22 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 93.25 E-value: 1.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL---ETIDSGDIIYNGEE---LPLDEL 70
Cdd:PRK09473 12 LLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLlaaNGRIGGSATFNGREilnLPEKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EK--RNLLGFVFQD--FQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAE---HVNAYPYSLSGGQKQRVA 143
Cdd:PRK09473 92 NKlrAEQISMIFQDpmTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEarkRMKMYPHEFSGGMRQRVM 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNElKREFNTAIIMITHDLGVVAGICDKVL 233
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-201 |
1.52e-22 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 91.09 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK--RNLLGF 78
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKimREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAypYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRA--GTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLAD 205
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-204 |
2.09e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 90.91 E-value: 2.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----------------------GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDI 58
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 59 IYNGEELPLdeLEkrnlLGFVFQdfqlfPHLTVLENLTLspiktkN-----FTKEDAEKK--AISLLTRLGLAEH--VNA 129
Cdd:COG1134 84 EVNGRVSAL--LE----LGAGFH-----PELTGRENIYL------NgrllgLSRKEIDEKfdEIVEFAELGDFIDqpVKT 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 130 YpyslSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1134 147 Y----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAI 217
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-204 |
2.60e-22 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 92.11 E-value: 2.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQI----ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLetID------SGDIIYNGEEL-PLDE 69
Cdd:PRK11022 3 LLNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL--IDypgrvmAEKLEFNGQDLqRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 70 LEKRNLLG----FVFQD--FQLFPHLTVLENLtLSPIKT-KNFTKEDAEKKAISLLTRLGL---AEHVNAYPYSLSGGQK 139
Cdd:PRK11022 81 KERRNLVGaevaMIFQDpmTSLNPCYTVGFQI-MEAIKVhQGGNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMS 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 140 QRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQNRElGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLleLQQKE-NMALVLITHDLALVAEAAHKII 225
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
2-191 |
2.73e-22 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 90.02 E-value: 2.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIyngeelpldelekrnllgFVFQ 81
Cdd:COG2401 31 LEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGC------------------VDVP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLtlspiktknfTKEDAEKKAISLLTRLGLAEHVN--AYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:COG2401 93 DNQFGREASLIDAI----------GRKGDFKDAVELLNAVGLSDAVLwlRRFKELSTGQKFRFRLALLLAERPKLLVIDE 162
|
170 180 190
....*....|....*....|....*....|....
gi 568064700 160 PTSALDPELRLEVeKLILQN--RELGMTQIVVTH 191
Cdd:COG2401 163 FCSHLDRQTAKRV-ARNLQKlaRRAGITLVVATH 195
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-207 |
3.78e-22 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 93.65 E-value: 3.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFG-EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGFV 79
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKdIDRHTLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHlTVLENLTLSpikTKNFTKEDAEKKAISLLT--------RLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:TIGR01193 554 PQEPYIFSG-SILENLLLG---AKENVSQDEIWAACEIAEikddienmPLGYQTELSEEGSSISGGQKQRIALARALLTD 629
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 152 PEIIGYDEPTSALDpelrLEVEKLILQNReLGM---TQIVVTHDLQFAENiADTILKVQ 207
Cdd:TIGR01193 630 SKVLILDESTSNLD----TITEKKIVNNL-LNLqdkTIIFVAHRLSVAKQ-SDKIIVLD 682
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
8-204 |
5.88e-22 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 88.68 E-value: 5.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 8 SKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQdfqlFP 87
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------IAYVSQ----EP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 88 HL---TVLENLTlspiktknFTKE-DAEK-----KAISLLTRLGLAEH----------VNaypysLSGGQKQRVALARAM 148
Cdd:cd03250 76 WIqngTIRENIL--------FGKPfDEERyekviKACALEPDLEILPDgdlteigekgIN-----LSGGQKQRISLARAV 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 149 MIDPEIIGYDEPTSALDPEL-RLEVEKLILQNRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03250 143 YSDADIYLLDDPLSAVDAHVgRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIV 198
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-207 |
7.24e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 92.77 E-value: 7.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQI--ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGF 78
Cdd:PRK11176 342 IEFRNVTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASlRNQVAL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFpHLTVLENLTLSpiKTKNFTKEDAEKKA--------ISLLTRlGLAEHVNAYPYSLSGGQKQRVALARAMMI 150
Cdd:PRK11176 422 VSQNVHLF-NDTIANNIAYA--RTEQYSREQIEEAArmayamdfINKMDN-GLDTVIGENGVLLSGGQRQRIAIARALLR 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVEKLI--LQ-NRelgmTQIVVTHDLQFAENiADTILKVQ 207
Cdd:PRK11176 498 DSPILILDEATSALDTESERAIQAALdeLQkNR----TSLVIAHRLSTIEK-ADEILVVE 552
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-200 |
7.90e-22 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 88.32 E-value: 7.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELE---KRNLLGF 78
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQRdsiARGLLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDfQLFPHLTVLENLTlspiktknFTKEDAEKKAI-SLLTRLGLA--EHVNAypYSLSGGQKQRVALARAMMIDPEII 155
Cdd:cd03231 79 GHAP-GIKTTLSVLENLR--------FWHADHSDEQVeEALARVGLNgfEDRPV--AQLSAGQQRRVALARLLLSGRPLW 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTH-DLQFAENIA 200
Cdd:cd03231 148 ILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHqDLGLSEAGA 193
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
9-204 |
9.31e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 88.74 E-value: 9.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 9 KRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEkrnlLGFVfqdfqlfPH 88
Cdd:cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG----GGFN-------PE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 LTVLENLTLSPIkTKNFTKEDAEKK--AISLLTRLG--LAEHVNAYpyslSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:cd03220 99 LTGRENIYLNGR-LLGLSRKEIDEKidEIIEFSELGdfIDLPVKTY----SSGMKARLAFAIATALEPDILLIDEVLAVG 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 165 DPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRAL 213
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-191 |
9.86e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 87.97 E-value: 9.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE--TIDSGDIIYNGE---ELPLDElekRNLL 76
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEditDLPPEE---RARL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GfVFQDFQlfphltvlENLTLSPIKTKNFTKEdaekkaislltrlglaehVNaypYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:cd03217 78 G-IFLAFQ--------YPPEIPGVKNADFLRY------------------VN---EGFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190
....*....|....*....|....*....|....*.
gi 568064700 157 YDEPTSALDPE-LRLeVEKLILQNRELGMTQIVVTH 191
Cdd:cd03217 128 LDEPDSGLDIDaLRL-VAEVINKLREEGKSVLIITH 162
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-203 |
1.03e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 91.91 E-value: 1.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDS--GDIIYNGEELPLDELEKRNLLGF 78
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEELQASNIRDTERAGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 V--FQDFQLFPHLTVLENLTLSPIKTKNFTKEDAE--KKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK13549 85 AiiHQELALVKELSVLENIFLGNEITPGGIMDYDAmyLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 155 IGYDEPTSALDpelRLEVEKL--ILQN-RELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13549 165 LILDEPTASLT---ESETAVLldIIRDlKAHGIACIYISHKLNEVKAISDTI 213
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
13-199 |
1.32e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 89.84 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-----RNLLGFVFQ--DFQL 85
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKyirpvRKRIGMVFQfpESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHlTVLENLTLSPiktKNFTK--EDAEKKAISLLTRLGLAEHV-NAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTS 162
Cdd:PRK13646 99 FED-TVEREIIFGP---KNFKMnlDEVKNYAHRLLMDLGFSRDVmSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568064700 163 ALDPELRLEVEKLILQ-NRELGMTQIVVTHDL----QFAENI 199
Cdd:PRK13646 175 GLDPQSKRQVMRLLKSlQTDENKTIILVSHDMnevaRYADEV 216
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
16-191 |
2.13e-21 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 91.41 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE----------LPLDELekRNLLgfvfqdfqL 85
Cdd:COG4178 378 LLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAGArvlflpqrpyLPLGTL--REAL--------L 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHLTvlenltlspiktKNFTkeDAEKKAIslLTRLGLAEHVN------AYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:COG4178 448 YPATA------------EAFS--DAELREA--LEAVGLGHLAErldeeaDWDQVLSLGEQQRLAFARLLLHKPDWLFLDE 511
|
170 180 190
....*....|....*....|....*....|..
gi 568064700 160 PTSALDPELRLEVEKLiLQNRELGMTQIVVTH 191
Cdd:COG4178 512 ATSALDEENEAALYQL-LREELPGTTVISVGH 542
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-204 |
2.64e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 88.51 E-value: 2.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGE-KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL--PLDELEKRNLLG 77
Cdd:PRK13644 1 MIRLENVSYSYPDgTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 78 FVFQDFQL-FPHLTVLENLTLSPiktKNFTKEDAE--KKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK13644 81 IVFQNPETqFVGRTVEEDLAFGP---ENLCLPPIEirKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQfAENIADTIL 204
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-ELHDADRII 206
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-201 |
3.80e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 88.17 E-value: 3.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDS-----------GDIIYNgEELPLDEL 70
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrvegrveffNQNIYE-RRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 ekRNLLGFVFQDFQLFPhLTVLENLTLS-------PIKTKNFTKEDAEKKAiSLLTRLGLAEHVNAYpySLSGGQKQRVA 143
Cdd:PRK14258 87 --RRQVSMVHPKPNLFP-MSVYDNVAYGvkivgwrPKLEIDDIVESALKDA-DLWDEIKHKIHKSAL--DLSGGQQQRLC 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 144 LARAMMIDPEIIGYDEPTSALDPELRLEVEKLIlQNREL--GMTQIVVTHDLQFAENIAD 201
Cdd:PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLI-QSLRLrsELTMVIVSHNLHQVSRLSD 219
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
3-204 |
4.84e-21 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 90.41 E-value: 4.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRF-GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRML-------AGLETIDSGDIiyngEELPLDELekRN 74
Cdd:PRK13657 336 EFDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLqrvfdpqSGRILIDGTDI----RTVTRASL--RR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 75 LLGFVFQDFQLFPHlTVLENLTLS-PIKTKNFTKEDAEKKAIS--LLTR-LGLAEHVNAYPYSLSGGQKQRVALARAMMI 150
Cdd:PRK13657 410 NIAVVFQDAGLFNR-SIEDNIRVGrPDATDEEMRAAAERAQAHdfIERKpDGYDTVVGERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 151 DPEIIGYDEPTSALDPELRLEVeKLILQNRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTVRN-ADRIL 540
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
3-191 |
5.14e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 90.18 E-value: 5.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL------------ETIDSGDIiyngeelpldel 70
Cdd:NF033858 268 EARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLlpasegeawlfgQPVDAGDI------------ 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 EKRNLLGFVFQDFQLFPHLTVLENLTLspiKTKNF--TKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:NF033858 336 ATRRRVGYMSQAFSLYGELTVRQNLEL---HARLFhlPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAV 412
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEV-EKLILQNRELGMTQIVVTH 191
Cdd:NF033858 413 IHKPELLILDEPTSGVDPVARDMFwRLLIELSREDGVTIFISTH 456
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-204 |
5.28e-21 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 89.99 E-value: 5.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYnGEELPldelekrnlLGFVFQ 81
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVK---------LAYVDQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQ-LFPHLTV-------LENLTLSPIKTK--------NFTKEDAEKKAislltrlglaehvnaypYSLSGGQKQRVALA 145
Cdd:TIGR03719 393 SRDaLDPNKTVweeisggLDIIKLGKREIPsrayvgrfNFKGSDQQKKV-----------------GQLSGGERNRVHLA 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPELRLEVEKLILqnrELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR03719 456 KTLKSGGNVLLLDEPTNDLDVETLRALEEALL---NFAGCAVVISHDRWFLDRIATHIL 511
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
14-191 |
6.24e-21 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 85.28 E-value: 6.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 14 KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYngeelpldeLEKRNLLgFVFQDfqlfphltvle 93
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM---------PEGEDLL-FLPQR----------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 94 nltlspiktknftkedaekkaiSLLTRLGLAEHVnAYPYS--LSGGQKQRVALARAMMIDPEIIGYDEPTSALDPelrlE 171
Cdd:cd03223 73 ----------------------PYLPLGTLREQL-IYPWDdvLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE----E 125
|
170 180
....*....|....*....|.
gi 568064700 172 VEKLILQN-RELGMTQIVVTH 191
Cdd:cd03223 126 SEDRLYQLlKELGITVISVGH 146
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-203 |
7.88e-21 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 89.72 E-value: 7.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLG--F 78
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGiyL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHLTVLENLTLSPIKTknftkEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILFGLPKR-----QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 159 EPTSALDPelrLEVEKLILQNREL---GMTQIVVTHDLQFAENIADTI 203
Cdd:PRK15439 166 EPTASLTP---AETERLFSRIRELlaqGVGIVFISHKLPEIRQLADRI 210
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
11-196 |
1.46e-20 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 86.58 E-value: 1.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 11 FGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL---PLDELEKRnlLGFVFQDFQLFP 87
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqhyASKEVARR--IGLLAQNATTPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 88 HLTVLENLTL-----SPIKTKnFTKEDAEKKAiSLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTS 162
Cdd:PRK10253 95 DITVQELVARgryphQPLFTR-WRKEDEEAVT-KAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
|
170 180 190
....*....|....*....|....*....|....*
gi 568064700 163 ALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFA 196
Cdd:PRK10253 173 WLDISHQIDLLELLSElNREKGYTLAAVLHDLNQA 207
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
15-204 |
1.73e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 85.60 E-value: 1.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 15 QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFVFQDFQLFPHlTVLE 93
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYlHSKVSLVGQEPVLFAR-SLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 94 NLTLSpIKTKNFTK-EDAEKKA-----ISLLtRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPE 167
Cdd:cd03248 107 NIAYG-LQSCSFECvKEAAQKAhahsfISEL-ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 168 LRLEVEKLILQNRElGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03248 185 SEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQIL 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-164 |
2.06e-20 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 88.14 E-value: 2.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRnlL 76
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVtfngPKSSQEAG--I 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLTLSPIKTKNFTKEDAEK---KAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKmyaEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161
|
170
....*....|.
gi 568064700 154 IIGYDEPTSAL 164
Cdd:PRK10762 162 VIIMDEPTDAL 172
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
2-204 |
4.77e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 87.57 E-value: 4.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISkrFG---EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGE---ELPLDELekRNL 75
Cdd:COG5265 358 VRFENVS--FGydpERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQdirDVTQASL--RAA 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 LGFVFQDfqlfphlTVLENLTL-------SPiktkNFTKEDAEKKA--------ISLL-----TRL---GLaehvnaypy 132
Cdd:COG5265 434 IGIVPQD-------TVLFNDTIayniaygRP----DASEEEVEAAAraaqihdfIESLpdgydTRVgerGL--------- 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 133 SLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPelrlEVEKLILQN-REL--GMTQIVVTHDLQFAENiADTIL 204
Cdd:COG5265 494 KLSGGEKQRVAIARTLLKNPPILIFDEATSALDS----RTERAIQAAlREVarGRTTLVIAHRLSTIVD-ADEIL 563
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-203 |
6.34e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.06 E-value: 6.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDeLEKRNLLGF-- 78
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK--PLD-YSKRGLLALrq 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 ----VFQD--FQLFpHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTrLGLAEHVNAYPYS-LSGGQKQRVALARAMMID 151
Cdd:PRK13638 78 qvatVFQDpeQQIF-YTDIDSDIAFS-LRNLGVPEAEITRRVDEALT-LVDAQHFRHQPIQcLSHGQKKRVAIAGALVLQ 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAV 206
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-204 |
9.65e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 86.23 E-value: 9.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRfgekQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRnlL 76
Cdd:COG1129 256 VLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVrirsPRDAIRAG--I 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQ---LFPHLTVLENLTLSPIK---TKNFTKEDAEKKAI-SLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:COG1129 330 AYVPEDRKgegLVLDLSIRENITLASLDrlsRGGLLDRRRERALAeEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWL 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLIlqnREL---GMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1129 410 ATDPKVLILDEPTRGIDVGAKAEIYRLI---RELaaeGKAVIVISSELPELLGLSDRIL 465
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-204 |
1.30e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 82.93 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEE---LPLDELekRNLL 76
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDiskIGLHDL--RSRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHlTVLENLtlspiktkNFTKEDAEKKAISLLTRLGLAEHVNAYPYSL-----------SGGQKQRVALA 145
Cdd:cd03244 81 SIIPQDPVLFSG-TIRSNL--------DPFGEYSDEELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLA 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPELRLEVEKLIlQNRELGMTQIVVTHDLqfaeniaDTIL 204
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHRL-------DTII 202
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-203 |
4.19e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.49 E-value: 4.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDS--GDIIYNGEELPLDELEKRNLLGF 78
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VF--QDFQLFPHLTVLENLTL-SPIKTKNFTKEDAE--KKAISLLTRLGLAEHVNAYPYS-LSGGQKQRVALARAMMIDP 152
Cdd:TIGR02633 81 VIihQELTLVPELSVAENIFLgNEITLPGGRMAYNAmyLRAKNLLRELQLDADNVTRPVGdYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 153 EIIGYDEPTSALDpelRLEVEKLILQNREL---GMTQIVVTHDLQFAENIADTI 203
Cdd:TIGR02633 161 RLLILDEPSSSLT---EKETEILLDIIRDLkahGVACVYISHKLNEVKAVCDTI 211
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-206 |
4.37e-19 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 84.56 E-value: 4.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNgeelpldelEKRNlLGFVFQ 81
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS---------ENAN-IGYYAQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DfqlfpHLTVLEN-LTLSPIKTKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK15064 390 D-----HAYDFENdLTLFDWMSQWRQEGDDEQAVRGTLGRLLFsQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 160 PTSALDPElrlEVEKLilqNRELGM---TQIVVTHDLQFAENIADTILKV 206
Cdd:PRK15064 465 PTNHMDME---SIESL---NMALEKyegTLIFVSHDREFVSSLATRIIEI 508
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-193 |
4.96e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 84.49 E-value: 4.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRF--GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP-LDELEKRNLLGF 78
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAdYSEAALRQAISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHlTVLENLTLSpiktkNFTKEDAEKKAIslLTRLGLAEHVNAYP----------YSLSGGQKQRVALARAM 148
Cdd:PRK11160 419 VSQRVHLFSA-TLRDNLLLA-----APNASDEALIEV--LQQVGLEKLLEDDKglnawlgeggRQLSGGEQRRLGIARAL 490
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDL 193
Cdd:PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRL 534
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-205 |
7.90e-19 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 83.69 E-value: 7.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 20 LNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFVFQDFQLFPHLTVLENltls 98
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNREAyRQLFSAVFSDFHLFDRLLGLDG---- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 99 piktknftkEDAEKKAISLLTRLGLAEHVnayPY--------SLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRl 170
Cdd:COG4615 427 ---------EADPARARELLERLELDHKV---SVedgrfsttDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPEFR- 493
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 171 EV--EKLILQNRELGMTQIVVTHDLQFAEnIADTILK 205
Cdd:COG4615 494 RVfyTELLPELKARGKTVIAISHDDRYFD-LADRVLK 529
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-201 |
8.56e-19 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 81.76 E-value: 8.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRnllGFVFQDF 83
Cdd:PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ--PLESWSSK---AFARKVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 84 QLFPHLTVLENLTLSPI----------KTKNFTKEDAEK--KAISLLtrlGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:PRK10575 89 YLPQQLPAAEGMTVRELvaigrypwhgALGRFGAADREKveEAISLV---GLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIAD 201
Cdd:PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRlSQERGLTVIAVLHDINMAARYCD 216
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-207 |
8.96e-19 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 83.61 E-value: 8.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP---LDELEKR----NLLGFVFQDfql 85
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTklqLDSWRSRlavvSQTPFLFSD--- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 fphlTVLENLTLSpiktknftKEDAEKKAISLLTRL------------GLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:PRK10789 404 ----TVANNIALG--------RPDATQQEIEHVARLasvhddilrlpqGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568064700 154 IIGYDEPTSALDPelrlEVEKLILQN-RELGM--TQIVVTHDLQfAENIADTILKVQ 207
Cdd:PRK10789 472 ILILDDALSAVDG----RTEHQILHNlRQWGEgrTVIISAHRLS-ALTEASEILVMQ 523
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-206 |
1.09e-18 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 83.45 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRF-GEKQIISDLNLK-VPEKQIlAIVGPSGGGKTTLLRMLAGLETIdsgdiiYNGEELPLDELEkrnlLGFVFQ 81
Cdd:TIGR03719 7 MNRVSKVVpPKKEILKDISLSfFPGAKI-GVLGLNGAGKSTLLRIMAGVDKD------FNGEARPQPGIK----VGYLPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLEN--LTLSPIKTK---------NFTKEDAEKKAisLLTRLG----LAEHVNAY---------------- 130
Cdd:TIGR03719 76 EPQLDPTKTVRENveEGVAEIKDAldrfneisaKYAEPDADFDK--LAAEQAelqeIIDAADAWdldsqleiamdalrcp 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 131 PY-----SLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLIlqnRELGMTQIVVTHDLQFAENIADTILK 205
Cdd:TIGR03719 154 PWdadvtKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHL---QEYPGTVVAVTHDRYFLDNVAGWILE 230
|
.
gi 568064700 206 V 206
Cdd:TIGR03719 231 L 231
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-204 |
1.30e-18 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 83.37 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQ----IISDLNLKVPEKQILAIVGPSGGGKT----TLLRML--AGLEtIDSGDIIY---NGEELPL 67
Cdd:PRK10261 12 VLAVENLNIAFMQEQqkiaAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLeqAGGL-VQCDKMLLrrrSRQVIEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 68 DELEKRNL-------LGFVFQD--FQLFPHLTVLENLTLSPIKTKNFTKEDAEKKAISLLTRLGLAEH---VNAYPYSLS 135
Cdd:PRK10261 91 SEQSAAQMrhvrgadMAMIFQEpmTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAqtiLSRYPHQLS 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 136 GGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQnRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK10261 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIkvLQ-KEMSMGVIFITHDMGVVAEIADRVL 240
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-204 |
3.01e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 80.52 E-value: 3.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLN---LKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL-EKRNLL 76
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQD-FQLFPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:PRK13642 84 GMVFQNpDNQFVGATVEDDVAFG-MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568064700 156 GYDEPTSALDPELRLEVEKLILQNRE-LGMTQIVVTHDLQFAENiADTIL 204
Cdd:PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEkYQLTVLSITHDLDEAAS-SDRIL 211
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-204 |
3.47e-18 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 82.09 E-value: 3.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYnGEELPldelekrnlLGFVFQ 81
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK---------LAYVDQ 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQ-LFPHLTV-------LENLTLSPIKTK--------NFTKEDAEKKAislltrlGLaehvnaypysLSGGQKQRVALA 145
Cdd:PRK11819 395 SRDaLDPNKTVweeisggLDIIKVGNREIPsrayvgrfNFKGGDQQKKV-------GV----------LSGGERNRLHLA 457
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPE-LR-LEvEKLIlqnrELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11819 458 KTLKQGGNVLLLDEPTNDLDVEtLRaLE-EALL----EFPGCAVVISHDRWFLDRIATHIL 513
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-204 |
3.86e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 80.52 E-value: 3.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF------------------GEKQII---SDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDII 59
Cdd:COG4586 1 IIEVENLSKTYrvyekepglkgalkglfrREYREVeavDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 60 YNGEElPLDElEKRNL--LGFVF-QDFQLFPHLTVLENLTLspiktknfTKE-----DAE-KKAISLLT-RLGLAEHVNA 129
Cdd:COG4586 81 VLGYV-PFKR-RKEFArrIGVVFgQRSQLWWDLPAIDSFRL--------LKAiyripDAEyKKRLDELVeLLDLGELLDT 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 130 YPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG4586 151 PVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEyNRERGTTILLTSHDMDDIEALCDRVI 226
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-207 |
2.22e-17 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 79.63 E-value: 2.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQI-ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGFV 79
Cdd:PRK10522 323 LELRNVTFAYQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDyRKLFSAV 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLtvlenltlspIKTKNFTKEDAekKAISLLTRLGLAEHVN-----AYPYSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK10522 403 FTDFHLFDQL----------LGPEGKPANPA--LVEKWLERLKMAHKLEledgrISNLKLSKGQKKRLALLLALAEERDI 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568064700 155 IGYDEPTSALDPELRLEV-EKLILQNRELGMTQIVVTHDLQFAENiADTILKVQ 207
Cdd:PRK10522 471 LLLDEWAADQDPHFRREFyQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMR 523
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-203 |
3.57e-17 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 78.02 E-value: 3.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLetIDSGDII------YNGEEL-PLDE 69
Cdd:COG4170 3 LLDIRNLTIEIdtpqGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGI--TKDNWHVtadrfrWNGIDLlKLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 70 LEKRNLLG----FVFQDFQ--LFPHLTVLENLTLSpIKTKNFT------KEDAEKKAISLLTRLGLAEH---VNAYPYSL 134
Cdd:COG4170 81 RERRKIIGreiaMIFQEPSscLDPSAKIGDQLIEA-IPSWTFKgkwwqrFKWRKKRAIELLHRVGIKDHkdiMNSYPHEL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 135 SGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:COG4170 160 TEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARlNQLQGTSILLISHDLESISQWADTI 229
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-191 |
3.61e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 76.14 E-value: 3.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENlTLSPIKTKNFTKEdaekkaISLLTRLGLAEHVNAYPYS-LSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK13540 81 HRSGINPYLTLREN-CLYDIHFSPGAVG------ITELCRLFSLEHLIDYPCGlLSSGQKRQVALLRLWMSKAKLWLLDE 153
|
170 180 190
....*....|....*....|....*....|..
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
17-193 |
4.37e-17 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 77.23 E-value: 4.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNLLGFVFQDFQL---FPHLtvLE 93
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ--PTRQALQKNLVAYVPQSEEVdwsFPVL--VE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 94 NLTL----SPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELR 169
Cdd:PRK15056 99 DVVMmgryGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
|
170 180
....*....|....*....|....
gi 568064700 170 LEVEKLILQNRELGMTQIVVTHDL 193
Cdd:PRK15056 179 ARIISLLRELRDEGKTMLVSTHNL 202
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
12-204 |
2.10e-16 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 76.68 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEK---RNLLGFVFQDfqlfPH 88
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR--PLSSLSHsvlRQGVAMVQQD----PV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 L---TVLENLTLSpiktknftKEDAEKKAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARAMMIDPEI 154
Cdd:PRK10790 426 VladTFLANVTLG--------RDISEEQVWQALETVQLAELARSLPdglytplgeqgNNLSVGQKQLLALARVLVQTPQI 497
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 155 IGYDEPTSALDPELRLEVEKLILQNRElGMTQIVVTHDLQfaeNI--ADTIL 204
Cdd:PRK10790 498 LILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS---TIveADTIL 545
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-204 |
2.51e-16 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 76.60 E-value: 2.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNIS-KRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL-PLDELEKRNL-LGF 78
Cdd:COG3845 258 LEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDItGLSPRERRRLgVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQ---LFPHLTVLENLTLSPIKTKNFTK------EDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAM 148
Cdd:COG3845 338 IPEDRLgrgLVPDMSVAENLILGRYRRPPFSRggfldrKAIRAFAEELIEEFDVrTPGPDTPARSLSGGNQQKVILAREL 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 149 MIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG3845 418 SRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIA 473
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
21-203 |
4.02e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 75.98 E-value: 4.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 21 NLKVPEK-QILAIVGPSGGGKTTLLRMLAGLETIDSGDIiynGEELPLDELEKRnllgfvFQDFQLFPHLTVLENLTLSP 99
Cdd:COG1245 92 GLPVPKKgKVTGILGPNGIGKSTALKILSGELKPNLGDY---DEEPSWDEVLKR------FRGTELQDYFKKLANGEIKV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 100 I---------------KTKN-FTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:COG1245 163 AhkpqyvdlipkvfkgTVRElLEKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSY 242
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 164 LDPELRLEVEKLIlqnREL---GMTQIVVTHDLQFAENIADTI 203
Cdd:COG1245 243 LDIYQRLNVARLI---RELaeeGKYVLVVEHDLAILDYLADYV 282
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
16-191 |
8.29e-16 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 72.57 E-value: 8.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelPLDELEKRNLLGFVFQDFQLFPHLTVLENL 95
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK--TATRGDRSRFMAYLGHLPGLKADLSTLENL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 96 TLspikTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKL 175
Cdd:PRK13543 104 HF----LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM 179
|
170
....*....|....*.
gi 568064700 176 ILQNRELGMTQIVVTH 191
Cdd:PRK13543 180 ISAHLRGGGAALVTTH 195
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-193 |
8.46e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 75.21 E-value: 8.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKqiISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDELEKRnlL 76
Cdd:PRK09700 265 VFEVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIsprsPLDAVKKG--M 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQ---DFQLFPHLTVLENLTLSP-IKTKN-------FTKEDAEKKAISLLTRLGLAEH-VNAYPYSLSGGQKQRVAL 144
Cdd:PRK09700 341 AYITEsrrDNGFFPNFSIAQNMAISRsLKDGGykgamglFHEVDEQRTAENQRELLALKCHsVNQNITELSGGNQQKVLI 420
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 145 ARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDL 193
Cdd:PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-204 |
1.14e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 72.83 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 26 EKQILAIVGPSGGGKTTLLRMLAGLETIDSGDII-------YNGEELPLD-ELEKRNLLGFVFQDFQlfphltvlenltl 97
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEieldtvsYKPQYIKADyEGTVRDLLSSITKDFY------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 98 spikTKNFTKEDAEK--KAISLLTRLglaehVNaypySLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKL 175
Cdd:cd03237 91 ----THPYFKTEIAKplQIEQILDRE-----VP----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV 157
|
170 180 190
....*....|....*....|....*....|..
gi 568064700 176 I---LQNRElgMTQIVVTHDLQFAENIADTIL 204
Cdd:cd03237 158 IrrfAENNE--KTAFVVEHDIIMIDYLADRLI 187
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
4-206 |
1.14e-15 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 74.77 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFG-EKQIISDLNLK-VPEKQIlAIVGPSGGGKTTLLRMLAGLETIdsgdiiYNGEELPLDELEkrnlLGFVFQ 81
Cdd:PRK11819 9 MNRVSKVVPpKKQILKDISLSfFPGAKI-GVLGLNGAGKSTLLRIMAGVDKE------FEGEARPAPGIK----VGYLPQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 DFQLFPHLTVLENLT--LSPIKTK---------NFTKEDAEKKAisLLTRLG----LAEHVNAY---------------- 130
Cdd:PRK11819 78 EPQLDPEKTVRENVEegVAEVKAAldrfneiyaAYAEPDADFDA--LAAEQGelqeIIDAADAWdldsqleiamdalrcp 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 131 PY-----SLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLiLQNRElGmTQIVVTHDLQFAENIADTILK 205
Cdd:PRK11819 156 PWdakvtKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDYP-G-TVVAVTHDRYFLDNVAGWILE 232
|
.
gi 568064700 206 V 206
Cdd:PRK11819 233 L 233
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
6-204 |
2.19e-15 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 74.05 E-value: 2.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 6 NISKRFGekqiisDLNLKVPEKQI-----LAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngeELPLDELEKRNllgFVF 80
Cdd:COG1245 346 DLTKSYG------GFSLEVEGGEIregevLGIVGPNGIGKTTFAKILAGVLKPDEGEV-----DEDLKISYKPQ---YIS 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFqlfpHLTVLENL--TLSPIKTKNFTKEDaekkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:COG1245 412 PDY----DGTVEEFLrsANTDDFGSSYYKTE-------IIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD 480
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568064700 159 EPTSALDPELRLEVEKLIlQN--RELGMTQIVVTHDLQFAENIADTIL 204
Cdd:COG1245 481 EPSAHLDVEQRLAVAKAI-RRfaENRGKTAMVVDHDIYLIDYISDRLM 527
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
17-207 |
3.07e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 71.21 E-value: 3.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLL-RMLAGLETIdSGDIIYN-----GEELPLDELEKRNLLGFVFQDFQLFpHLT 90
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLlAILGEMQTL-EGKVHWSnknesEPSFEATRSRNRYSVAYAAQKPWLL-NAT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 91 VLENLTL-SPIKTKNFTkedAEKKAISLLTRLGLAEH-----VNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:cd03290 95 VEENITFgSPFNKQRYK---AVTDACSLQPDIDLLPFgdqteIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 165 DPEL--RLEVEKLILQNRELGMTQIVVTHDLQFAENiADTILKVQ 207
Cdd:cd03290 172 DIHLsdHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMK 215
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1-204 |
3.36e-15 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 73.30 E-value: 3.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGekqiisDLNLKVPEKQI-----LAIVGPSGGGKTTLLRMLAGLETIDSG------DIIYNGEELPLDe 69
Cdd:PRK13409 340 LVEYPDLTKKLG------DFSLEVEGGEIyegevIGIVGPNGIGKTTFAKLLAGVLKPDEGevdpelKISYKPQYIKPD- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 70 lekrnllgfvfqdfqlfPHLTVLENLtlSPIKTK---NFTKEDaekkaisLLTRLGLAEHVNAYPYSLSGGQKQRVALAR 146
Cdd:PRK13409 413 -----------------YDGTVEDLL--RSITDDlgsSYYKSE-------IIKPLQLERLLDKNVKDLSGGELQRVAIAA 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 147 AMMIDPEIIGYDEPTSALDPELRLEVEKLI---LQNRELGMtqIVVTHDLQFAENIADTIL 204
Cdd:PRK13409 467 CLSRDADLYLLDEPSAHLDVEQRLAVAKAIrriAEEREATA--LVVDHDIYMIDYISDRLM 525
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-165 |
6.07e-15 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 71.21 E-value: 6.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE--TIDSGDIIYNGEELPLDELEKRNLLGf 78
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFKGESILDLEPEERAHLG- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQL---FPHLTVLENLTLSpIKTKNFTKEDAEKKAISLLTRLG------------LAEHVNAypySLSGGQKQRVA 143
Cdd:CHL00131 86 IFLAFQYpieIPGVSNADFLRLA-YNSKRKFQGLPELDPLEFLEIINeklklvgmdpsfLSRNVNE---GFSGGEKKRNE 161
|
170 180
....*....|....*....|..
gi 568064700 144 LARAMMIDPEIIGYDEPTSALD 165
Cdd:CHL00131 162 ILQMALLDSELAILDETDSGLD 183
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-203 |
6.89e-15 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 71.76 E-value: 6.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRF----GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE------TIDS---GDIiyngEELPL 67
Cdd:PRK15093 3 LLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnwrvTADRmrfDDI----DLLRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 68 DELEKRNLLG----FVFQDFQ--LFPHLTV----LENLTLSPIKTKNFTKEDAEK-KAISLLTRLGLAEH---VNAYPYS 133
Cdd:PRK15093 79 SPRERRKLVGhnvsMIFQEPQscLDPSERVgrqlMQNIPGWTYKGRWWQRFGWRKrRAIELLHRVGIKDHkdaMRSFPYE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 134 LSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQ-NRELGMTQIVVTHDLQFAENIADTI 203
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRlNQNNNTTILLISHDLQMLSQWADKI 229
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
13-204 |
8.82e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 72.32 E-value: 8.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLR-MLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQDFQLFpHLTV 91
Cdd:PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRGS------------VAYVPQVSWIF-NATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 92 LENLTL-SPIKTKNFTKE---DAEKKAISLLTRLGLAEhVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPE 167
Cdd:PLN03232 696 RENILFgSDFESERYWRAidvTALQHDLDLLPGRDLTE-IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 168 LRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PLN03232 775 VAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIIL 811
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
12-204 |
1.20e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 72.08 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLR-MLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQDFQLFpHLT 90
Cdd:PLN03130 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRGT------------VAYVPQVSWIF-NAT 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 91 VLENLTL-SPIKTKNFTKE---DAEKKAISLLTRLGLAE----HVNaypysLSGGQKQRVALARAMMIDPEIIGYDEPTS 162
Cdd:PLN03130 695 VRDNILFgSPFDPERYERAidvTALQHDLDLLPGGDLTEigerGVN-----ISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 163 ALDPELRLEV-EKLIlqNREL-GMTQIVVTHDLQFAENIADTIL 204
Cdd:PLN03130 770 ALDAHVGRQVfDKCI--KDELrGKTRVLVTNQLHFLSQVDRIIL 811
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
21-203 |
2.34e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 70.99 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 21 NLKVPEK-QILAIVGPSGGGKTTLLRMLagletidSGDIIYN----GEELPLDELEKRnllgfvFQDFQLFPHLTVLENL 95
Cdd:PRK13409 92 GLPIPKEgKVTGILGPNGIGKTTAVKIL-------SGELIPNlgdyEEEPSWDEVLKR------FRGTELQNYFKKLYNG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 96 TLSPI---------------KTKN-FTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK13409 159 EIKVVhkpqyvdlipkvfkgKVRElLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 160 PTSALDPELRLEVEKLIlqnREL--GMTQIVVTHDLQFAENIADTI 203
Cdd:PRK13409 239 PTSYLDIRQRLNVARLI---RELaeGKYVLVVEHDLAVLDYLADNV 281
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
22-203 |
2.69e-14 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 69.32 E-value: 2.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 22 LKVP-EKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIiynGEELPLDELeKRNLLGFVFQDFqlfphLTVLENLTLSPI 100
Cdd:cd03236 20 LPVPrEGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF---DDPPDWDEI-LDEFRGSELQNY-----FTKLLEGDVKVI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 101 KT----------------KNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:cd03236 91 VKpqyvdlipkavkgkvgELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170
|
170 180 190
....*....|....*....|....*....|....*....
gi 568064700 165 DPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTI 203
Cdd:cd03236 171 DIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYI 209
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-205 |
3.38e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.53 E-value: 3.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPL----DELEkrNLLGFV 79
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFksskEALE--NGISMV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLFPHLTVLENLTLSPIKTKNF----TKEDAEKKAIslLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEII 155
Cdd:PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMfvdqDKMYRDTKAI--FDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 156 GYDEPTSALDPElrlEVE---KLILQNRELGMTQIVVTHDLQFAENIAD--TILK 205
Cdd:PRK10982 157 IMDEPTSSLTEK---EVNhlfTIIRKLKERGCGIVYISHKMEEIFQLCDeiTILR 208
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
4-188 |
6.09e-14 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 67.29 E-value: 6.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 4 LKNIS----KRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAG-LETIDS--GDIIYNGEELPLDELEKRNLL 76
Cdd:cd03233 6 WRNISfttgKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrTEGNVSveGDIHYNGIPYKEFAEKYPGEI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTVLENLTLSpIKTKNftkedaekkaislltrlglaehvNAYPYSLSGGQKQRVALARAMMIDPEIIG 156
Cdd:cd03233 86 IYVSEEDVHFPTLTVRETLDFA-LRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLC 141
|
170 180 190
....*....|....*....|....*....|...
gi 568064700 157 YDEPTSALDPELRLEVEKLI-LQNRELGMTQIV 188
Cdd:cd03233 142 WDNSTRGLDSSTALEILKCIrTMADVLKTTTFV 174
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-191 |
6.35e-14 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 70.06 E-value: 6.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQ---IISDLNLKVPEKQILAIVGPSGGGKTTLLRML------------------------------- 47
Cdd:PTZ00265 1166 IEIMDVNFRYISRPnvpIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLmrfydlkndhhivfknehtndmtneqdyqgd 1245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 48 ----AGLETI------------DSGDIIYNGEELPLDEL--------EKRNLLGFVFQDFQLFpHLTVLENLtlspiktk 103
Cdd:PTZ00265 1246 eeqnVGMKNVnefsltkeggsgEDSTVFKNSGKILLDGVdicdynlkDLRNLFSIVSQEPMLF-NMSIYENI-------- 1316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 104 NFTKEDAEKKAISLLTRLGLAEH----------VNAYPY--SLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLE 171
Cdd:PTZ00265 1317 KFGKEDATREDVKRACKFAAIDEfieslpnkydTNVGPYgkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
|
250 260
....*....|....*....|.
gi 568064700 172 VEKLILQNRELG-MTQIVVTH 191
Cdd:PTZ00265 1397 IEKTIVDIKDKAdKTIITIAH 1417
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-193 |
7.46e-14 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 69.67 E-value: 7.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEK---QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK--RNLL 76
Cdd:PTZ00265 383 IQFKNVRFHYDTRkdvEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKwwRSKI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPH------------LTVLENLTLSPIKTKNFTKEDAEKK------------------------------- 113
Cdd:PTZ00265 463 GVVSQDPLLFSNsiknnikyslysLKDLEALSNYYNEDGNDSQENKNKRnscrakcagdlndmsnttdsneliemrknyq 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 114 ------AISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI 176
Cdd:PTZ00265 543 tikdseVVDVSKKVLIHDFVSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
|
250
....*....|....*....
gi 568064700 177 --LQNRELGMTqIVVTHDL 193
Cdd:PTZ00265 623 nnLKGNENRIT-IIIAHRL 640
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
28-193 |
1.40e-13 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 67.17 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 28 QILAIVGPSGGGKTTLLRMLAGLETiDSGDIIYNGEEL---PLDELEKRNllGFVFQDFQLFPHLTVLENLTLS-PIKtk 103
Cdd:COG4138 23 ELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPLsdwSAAELARHR--AYLSQQQSPPFAMPVFQYLALHqPAG-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 104 nfTKEDAEKKAISLLT-RLGLAE----HVNAypysLSGGQKQRVALARAMM-IDPEIIGY------DEPTSALDPELRLE 171
Cdd:COG4138 98 --ASSEAVEQLLAQLAeALGLEDklsrPLTQ----LSGGEWQRVRLAAVLLqVWPTINPEgqllllDEPMNSLDVAQQAA 171
|
170 180
....*....|....*....|..
gi 568064700 172 VEKLILQNRELGMTQIVVTHDL 193
Cdd:COG4138 172 LDRLLRELCQQGITVVMSSHDL 193
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
13-206 |
1.78e-13 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 68.60 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLA----GLETIDSGDIIYNGeeLPLDELEKRnLLGFVFQDFQL--- 85
Cdd:TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDG--ITPEEIKKH-YRGDVVYNAETdvh 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHLTVLENLTLSP-IKT-----KNFTKED-AEKKAISLLTRLGLAeHV------NAYPYSLSGGQKQRVALARAMMIDP 152
Cdd:TIGR00956 150 FPHLTVGETLDFAArCKTpqnrpDGVSREEyAKHIADVYMATYGLS-HTrntkvgNDFVRGVSGGERKRVSIAEASLGGA 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 153 EIIGYDEPTSALDPELRLE-VEKLILQNRELGMTQIVVThdLQFAENIADTILKV 206
Cdd:TIGR00956 229 KIQCWDNATRGLDSATALEfIRALKTSANILDTTPLVAI--YQCSQDAYELFDKV 281
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
12-190 |
2.15e-13 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 65.73 E-value: 2.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETID--SGDIIYNGEELPlDELEKRnlLGFVFQDFQLFPHL 89
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLD-KNFQRS--TGYVEQQDVHSPNL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 90 TVLENLTLSpiktknftkedaekkaislltrlglaehvnAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELR 169
Cdd:cd03232 95 TVREALRFS------------------------------ALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144
|
170 180
....*....|....*....|.
gi 568064700 170 LEVEKLILQNRELGMTqIVVT 190
Cdd:cd03232 145 YNIVRFLKKLADSGQA-ILCT 164
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-204 |
2.28e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 67.93 E-value: 2.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-ETIDSGDIIYNGEEL----PLDELEKRnlLGFVFQDFQ---LFPH 88
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVdirnPAQAIRAG--IAMVPEDRKrhgIVPI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 89 LTVLENLTLSPIK---TKNFTKEDAEKKAI-SLLTRLGLAehvNAYPY----SLSGGQKQRVALARAMMIDPEIIGYDEP 160
Cdd:TIGR02633 354 LGVGKNITLSVLKsfcFKMRIDAAAELQIIgSAIQRLKVK---TASPFlpigRLSGGNQQKAVLAKMLLTNPRVLILDEP 430
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568064700 161 TSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:TIGR02633 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL 474
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-193 |
2.54e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 66.49 E-value: 2.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 20 LNLKVPEKQILAIVGPSGGGKTTLLRMLAGLeTIDSGDIIYNG---EELPLDELEKRNllGFVFQDFQLFPHLTVLENLT 96
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGqplEAWSAAELARHR--AYLSQQQTPPFAMPVFQYLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 97 LS-PIKtknfTKEDAEKKAISLLTRL-----GLAEHVNAypysLSGGQKQRVALARAMM-IDPEIIGY------DEPTSA 163
Cdd:PRK03695 92 LHqPDK----TRTEAVASALNEVAEAlglddKLGRSVNQ----LSGGEWQRVRLAAVVLqVWPDINPAgqllllDEPMNS 163
|
170 180 190
....*....|....*....|....*....|
gi 568064700 164 LDPELRLEVEKLILQNRELGMTQIVVTHDL 193
Cdd:PRK03695 164 LDVAQQAALDRLLSELCQQGIAVVMSSHDL 193
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-201 |
5.60e-13 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.74 E-value: 5.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEK--QIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEK-RNLLGF 78
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDlRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHlTVLENLTLspiktknFTKEDAEKkaisLLTRLGLAEHVNaypySLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:cd03369 87 IPQDPTLFSG-TIRSNLDP-------FDEYSDEE----IYGALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568064700 159 EPTSALDPELRLEVEKLIlqnREL--GMTQIVVTHDLQfaeNIAD 201
Cdd:cd03369 151 EATASIDYATDALIQKTI---REEftNSTILTIAHRLR---TIID 189
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
28-209 |
9.01e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 66.58 E-value: 9.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 28 QILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVFQDFQLFPHLTVLENLTLSPiKTKNFTK 107
Cdd:TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYA-RLRGVPA 2044
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 108 EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQI 187
Cdd:TIGR01257 2045 EEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124
|
170 180
....*....|....*....|..
gi 568064700 188 VVTHDLQFAENIAdTILKVQLK 209
Cdd:TIGR01257 2125 LTSHSMEECEALC-TRLAIMVK 2145
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
14-204 |
1.05e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.11 E-value: 1.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 14 KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGL-ETIDSGDIIYNGEEL----PLDELekRNLLGFVFQD---FQL 85
Cdd:PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVkirnPQQAI--AQGIAMVPEDrkrDGI 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 86 FPHLTVLENLTLSPIKTknFTK-----EDAEKKAI-SLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYD 158
Cdd:PRK13549 353 VPVMGVGKNITLAALDR--FTGgsridDAAELKTIlESIQRLKVkTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568064700 159 EPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL 476
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-201 |
1.46e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 64.34 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRfGEKQIISDLNLKVPEKQILAIVGPSGGGKT----TLLRML-AGLETIdSGDIIYNGEELPLDELEKRNLL 76
Cdd:PRK10418 5 IELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILpAGVRQT-AGRVLLDGKPVAPCALRGRKIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 gfvfqdfqlfphlTVLEN--LTLSPIKT---------KNFTKEDAEKKAISLLTRLGLAEH---VNAYPYSLSGGQKQRV 142
Cdd:PRK10418 83 -------------TIMQNprSAFNPLHTmhtharetcLALGKPADDATLTAALEAVGLENAarvLKLYPFEMSGGMLQRM 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568064700 143 ALARAMMIDPEIIGYDEPTSALDPELRLEVEKL---ILQNRELGMtqIVVTHDLQFAENIAD 201
Cdd:PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLlesIVQKRALGM--LLVTHDMGVVARLAD 209
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-204 |
3.13e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 64.64 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISkrfGEKqiISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEEL----PLDEL------- 70
Cdd:PRK10762 258 LKVDNLS---GPG--VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvtrsPQDGLangivyi 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 -EKRNLLGFVFQdfqlfphLTVLENLTLSPI----KTKNFTKEDAEKKAISLLTRL------------GLaehvnaypys 133
Cdd:PRK10762 333 sEDRKRDGLVLG-------MSVKENMSLTALryfsRAGGSLKHADEQQAVSDFIRLfniktpsmeqaiGL---------- 395
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 134 LSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL 466
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
12-195 |
5.47e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 64.20 E-value: 5.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 12 GEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLR-MLAGLETID-----SGDIIYNGEE--LPLDELEKRNLLGFVFQDF 83
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDKVEghvhmKGSVAYVPQQawIQNDSLRENILFGKALNEK 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 84 QlfpHLTVLENLTLSPiktknftkeDAEKKAISLLTRLGlAEHVNaypysLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:TIGR00957 729 Y---YQQVLEACALLP---------DLEILPSGDRTEIG-EKGVN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSA 790
|
170 180 190
....*....|....*....|....*....|....*...
gi 568064700 164 LDPELRLEV-EKLI-----LQNRelgmTQIVVTHDLQF 195
Cdd:TIGR00957 791 VDAHVGKHIfEHVIgpegvLKNK----TRILVTHGISY 824
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
3-195 |
6.44e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 63.50 E-value: 6.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGletiD-----------------SGDIIYNgeel 65
Cdd:PRK10938 262 VLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG----DhpqgysndltlfgrrrgSGETIWD---- 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 66 pldelEKRNLlGFVFQDFqlfpHL-----TVLENLTLS----PIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPY-SLS 135
Cdd:PRK10938 334 -----IKKHI-GYVSSSL----HLdyrvsTSVRNVILSgffdSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFhSLS 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 136 GGQkQRVAL-ARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIV------------VTHDLQF 195
Cdd:PRK10938 404 WGQ-QRLALiVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLfvshhaedapacITHRLEF 475
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-200 |
7.75e-12 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 63.22 E-value: 7.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLlRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFvfq 81
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfpHLTVL----------ENLTLSPiKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMID 151
Cdd:NF000106 90 ------HRPVR*grresfsgrENLYMIG-R*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGR 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 152 PEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIA 200
Cdd:NF000106 163 PAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLA 211
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
16-191 |
8.01e-12 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 63.61 E-value: 8.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIdsgdiiYNGEeLPLDElekRNLLGFVFQDfqlfPHLTV--LE 93
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPV------YGGR-LTKPA---KGKLFYVPQR----PYMTLgtLR 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 94 NLTLSPIKTKNFTKE---DAEKKAI-------SLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:TIGR00954 533 DQIIYPDSSEDMKRRglsDKDLEQIldnvqltHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612
|
170 180
....*....|....*....|....*....
gi 568064700 164 LDPelrlEVEKLILQN-RELGMTQIVVTH 191
Cdd:TIGR00954 613 VSV----DVEGYMYRLcREFGITLFSVSH 637
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
3-190 |
3.88e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 61.68 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngEELPLDELEKRNL------- 75
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRV----EVLGGDMADARHRravcpri 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 76 ------LGfvfqdFQLFPHLTVLENL----TLspiktknFTKEDAEKKA-I-SLLTRLGLAehvnayPYS------LSGG 137
Cdd:NF033858 79 aympqgLG-----KNLYPTLSVFENLdffgRL-------FGQDAAERRRrIdELLRATGLA------PFAdrpagkLSGG 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 138 QKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI--LQNRELGMTQIVVT 190
Cdd:NF033858 141 MKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIdrIRAERPGMSVLVAT 195
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
28-165 |
4.55e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.66 E-value: 4.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 28 QILAIVGPSGGGKTTLLRMLAGLET---IDSGDIIYNGEelPLDELEKRNlLGFVFQ-DFQLfPHLTVLENLTLS----- 98
Cdd:TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTtgvITGGDRLVNGR--PLDSSFQRS-IGYVQQqDLHL-PTSTVRESLRFSaylrq 865
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 99 PIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYS-LSGGQKQRVALARAMMIDPEIIGY-DEPTSALD 165
Cdd:TIGR00956 866 PKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEgLNVEQRKRLTIGVELVAKPKLLLFlDEPTSGLD 934
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
14-193 |
6.83e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 60.95 E-value: 6.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 14 KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngeelpldeLEKRNLlGFVFQDFQLFpHLTVLE 93
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-----------WAERSI-AYVPQQAWIM-NATVRG 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 94 NLTLspiktknFTKEDAEK--KAISL------LTRL--GLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSA 163
Cdd:PTZ00243 740 NILF-------FDEEDAARlaDAVRVsqleadLAQLggGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
170 180 190
....*....|....*....|....*....|.
gi 568064700 164 LDPEL-RLEVEKLILqNRELGMTQIVVTHDL 193
Cdd:PTZ00243 813 LDAHVgERVVEECFL-GALAGKTRVLATHQV 842
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
16-203 |
8.13e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 59.84 E-value: 8.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETID--------SGDIIYNGEelPLDELEKRNLL----------- 76
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGE--PLAAIDAPRLArlravlpqaaq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 -GFVFQDFQL-----FPHLTvlenltlspiKTKNFTKEDAEKkAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAM-- 148
Cdd:PRK13547 94 pAFAFSAREIvllgrYPHAR----------RAGALTHRDGEI-AWQALALAGATALVGRDVTTLSGGELARVQFARVLaq 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 149 -------MIDPEIIGYDEPTSALDPELR---LEVEKLILQNRELGMTQIVvtHDLQFAENIADTI 203
Cdd:PRK13547 163 lwpphdaAQPPRYLLLDEPTAALDLAHQhrlLDTVRRLARDWNLGVLAIV--HDPNLAARHADRI 225
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-191 |
8.61e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 59.42 E-value: 8.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE--TIDSGDIIYNGEELPLDELEKRNLLGf 78
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQL---FPHLT-----------VLENLTLSPIKTKNFTKEDAEKKAI-----SLLTRlglaeHVNAypySLSGGQK 139
Cdd:PRK09580 80 IFMAFQYpveIPGVSnqfflqtalnaVRSYRGQEPLDRFDFQDLMEEKIALlkmpeDLLTR-----SVNV---GFSGGEK 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 140 QRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-198 |
8.85e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 60.35 E-value: 8.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 3 ELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDiIYNGEELPLDELEK-RNLLGfvfq 81
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR-IHCGTKLEVAYFDQhRAELD---- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 82 dfqlfPHLTVLENLtlspiktknftkedAEKKaiSLLTRLGLAEHVNAY-------------PY-SLSGGQKQRVALARA 147
Cdd:PRK11147 396 -----PEKTVMDNL--------------AEGK--QEVMVNGRPRHVLGYlqdflfhpkramtPVkALSGGERNRLLLARL 454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568064700 148 MMIDPEIIGYDEPTSALDPElRLEVEKLILQNRElGmTQIVVTHDLQFAEN 198
Cdd:PRK11147 455 FLKPSNLLILDEPTNDLDVE-TLELLEELLDSYQ-G-TVLLVSHDRQFVDN 502
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
7-203 |
1.99e-10 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 57.58 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 7 ISKRFGEKQIISDLNlKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngeELPLdelekrnllgfvfqdfqlf 86
Cdd:cd03222 6 CVKRYGVFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-----EWDG------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 87 phltvlENLTLSPIKTKnftkedaekkaislltrlglaehvnaypysLSGGQKQRVALARAMMIDPEIIGYDEPTSALDP 166
Cdd:cd03222 61 ------ITPVYKPQYID------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104
|
170 180 190
....*....|....*....|....*....|....*...
gi 568064700 167 ELRLEVEKLILQNRELGM-TQIVVTHDLQFAENIADTI 203
Cdd:cd03222 105 EQRLNAARAIRRLSEEGKkTALVVEHDLAVLDYLSDRI 142
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1-191 |
7.45e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 56.03 E-value: 7.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIIsDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYngEELPLDELEKRnLLGFVF 80
Cdd:PRK13541 1 MLSLHQLQFNIEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNINNIAKP-YCTYIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLENLTL-SPIKTKNFTKEDAekkaislLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDE 159
Cdd:PRK13541 77 HNLGLKLEMTVFENLKFwSEIYNSAETLYAA-------IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
|
170 180 190
....*....|....*....|....*....|..
gi 568064700 160 PTSALDPELRLEVEKLILQNRELGMTQIVVTH 191
Cdd:PRK13541 150 VETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
16-204 |
8.75e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 56.79 E-value: 8.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQDFQLFPHlTVLENL 95
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFSSQFSWIMPG-TIKENI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 96 TlspiktknFTKEDAEKKAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:cd03291 119 I--------FGVSYDEYRYKSVVKACQLEEDITKFPekdntvlgeggITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 165 DPELRLEVEKLILQNRELGMTQIVVTHDLQFAEnIADTIL 204
Cdd:cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKIL 229
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
2-207 |
9.53e-10 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 57.56 E-value: 9.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAgLETID----SGDIIYNGEELPLD--------- 68
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA-MHAIDgipkNCQILHVEQEVVGDdttalqcvl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 69 --ELEKRNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFTKED--------------------AEKKAISLLTRLGL-AE 125
Cdd:PLN03073 257 ntDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDavsqrleeiykrlelidaytAEARAASILAGLSFtPE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 126 HVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRElgmTQIVVTHDLQFAENIADTILK 205
Cdd:PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK---TFIVVSHAREFLNTVVTDILH 413
|
..
gi 568064700 206 VQ 207
Cdd:PLN03073 414 LH 415
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
18-204 |
1.17e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 56.98 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 18 SDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF--QDFQ---LFPHLTVL 92
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYlpEDRQssgLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 93 ENLTLSPIKTKNFTKEDAEKKAIslLTR----LGLA-EHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPE 167
Cdd:PRK15439 360 WNVCALTHNRRGFWIKPARENAV--LERyrraLNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
|
170 180 190
....*....|....*....|....*....|....*..
gi 568064700 168 LRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL 474
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
16-204 |
1.48e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 57.23 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 16 IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQDFQLFPHlTVLENL 95
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFSPQTSWIMPG-TIKDNI 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 96 TlspiktknFTKEDAEKKAISLLTRLGLAEHVNAYP-----------YSLSGGQKQRVALARAMMIDPEIIGYDEPTSAL 164
Cdd:TIGR01271 508 I--------FGLSYDEYRYTSVIKACQLEEDIALFPekdktvlgeggITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568064700 165 DPELRLEVEKLILQNRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKIL 618
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
32-204 |
2.28e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 56.11 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 32 IVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEeLPLDELEK---RNLLGFVFqDFqlfphltVLENLTLSPIKTKNF--- 105
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-LIVARLQQdppRNVEGTVY-DF-------VAEGIEEQAEYLKRYhdi 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 106 ---TKEDAEKKAISLLTRL-GLAEHVNAYPY--------------------SLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PRK11147 105 shlVETDPSEKNLNELAKLqEQLDHHNLWQLenrinevlaqlgldpdaalsSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568064700 162 SALDPELRLEVEKLILqnrELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11147 185 NHLDIETIEWLEGFLK---TFQGSIIFISHDRSFIRNMATRIV 224
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
19-192 |
2.45e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 53.33 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 19 DLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGdIIYNGEELPLDELEKRNLLGFvfqDFQLFPHLTVLENLTLS 98
Cdd:PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFRSAKVRMAVFSQHHVDGL---DLSSNPLLYMMRCFPGV 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 99 PiktknftkedaEKKAISLLTRLGLAEHVNAYP-YSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPElrlEVEKLIl 177
Cdd:PLN03073 603 P-----------EQKLRAHLGSFGVTGNLALQPmYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALI- 667
|
170
....*....|....*...
gi 568064700 178 qnRELGMTQ---IVVTHD 192
Cdd:PLN03073 668 --QGLVLFQggvLMVSHD 683
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
133-206 |
3.02e-08 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 51.84 E-value: 3.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 133 SLSGGQKQ------RVALARAMMIDPEIIGYDEPTSALDPE-LRLEVEKLI-LQNRELGMTQIVVTHDLQFaENIADTIL 204
Cdd:cd03240 115 RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEEnIEESLAEIIeERKSQKNFQLIVITHDEEL-VDAADHIY 193
|
..
gi 568064700 205 KV 206
Cdd:cd03240 194 RV 195
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
31-165 |
4.09e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 52.93 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 31 AIVGPSGGGKTTLLRMLAGLET---IDsGDIIYNGeeLPLDELEKRNLLGFVFQDFQLFPHLTVLENLTLS-----PIKT 102
Cdd:PLN03140 910 ALMGVSGAGKTTLMDVLAGRKTggyIE-GDIRISG--FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSaflrlPKEV 986
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 103 KNFTKEDAEKKAISLLTRLGLAEHVNAYP--YSLSGGQKQRVALARAMMIDPEIIGYDEPTSALD 165
Cdd:PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-195 |
2.47e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.52 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 27 KQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIY-NGEELPLDELEKRNLLGfvfqdfqlfphltvlenltlspiktknf 105
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYiDGEDILEEVLDQLLLII---------------------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 106 tkedaekkaislltrlglaehVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMT 185
Cdd:smart00382 54 ---------------------VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK 112
|
170
....*....|....*.
gi 568064700 186 Q------IVVTHDLQF 195
Cdd:smart00382 113 SeknltvILTTNDEKD 128
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-204 |
6.46e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 48.75 E-value: 6.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRfGEKQIISdlnLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDEL----------- 70
Cdd:PRK11288 258 LRLDGLKGP-GLREPIS---FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPrdairagimlc 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 71 -EKRNLLGFVfqdfqlfPHLTVLENLTLSP----IKTKNFTKEDAEK-------KAISLLTRLGLAEHVNaypysLSGGQ 138
Cdd:PRK11288 334 pEDRKAEGII-------PVHSVADNINISArrhhLRAGCLINNRWEAenadrfiRSLNIKTPSREQLIMN-----LSGGN 401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 139 KQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV 467
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-176 |
1.02e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.79 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGEKQ--IISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELekRNLL 76
Cdd:TIGR00957 1285 VEFRNYCLRYREDLdlVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGlniAKIGLHDL--RFKI 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHLTvleNLTLSPIKTknFTKEDaekkaisLLTRLGLAE---HVNAYP-----------YSLSGGQKQRV 142
Cdd:TIGR00957 1363 TIIPQDPVLFSGSL---RMNLDPFSQ--YSDEE-------VWWALELAHlktFVSALPdkldhecaeggENLSVGQRQLV 1430
|
170 180 190
....*....|....*....|....*....|....
gi 568064700 143 ALARAMMIDPEIIGYDEPTSALDpelrLEVEKLI 176
Cdd:TIGR00957 1431 CLARALLRKTKILVLDEATAAVD----LETDNLI 1460
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-166 |
1.63e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.98 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE--KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDsGDIIYNGEELPLDELEK-RNLLGF 78
Cdd:TIGR01271 1218 MDVQGLTAKYTEagRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTwRKAFGV 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDFQLFPHlTVLENLTlspiKTKNFTKEDAEKKAisllTRLGLAEHVNAYP-----------YSLSGGQKQRVALARA 147
Cdd:TIGR01271 1297 IPQKVFIFSG-TFRKNLD----PYEQWSDEEIWKVA----EEVGLKSVIEQFPdkldfvlvdggYVLSNGHKQLMCLARS 1367
|
170
....*....|....*....
gi 568064700 148 MMIDPEIIGYDEPTSALDP 166
Cdd:TIGR01271 1368 ILSKAKILLLDEPSAHLDP 1386
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-192 |
2.04e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.47 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLK-VPEKQIlAIVGPSGGGKTTLLRMLAGLETIDSGDIiyngeelpldELEKRNLLGFv 79
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNlVPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEI----------GLAKGIKLGY- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 80 FQDFQLfPHLTVLEnltlSPIK-TKNFTKEDAEKKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGY 157
Cdd:PRK10636 380 FAQHQL-EFLRADE----SPLQhLARLAPQELEQKLRDYLGGFGFqGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454
|
170 180 190
....*....|....*....|....*....|....*.
gi 568064700 158 DEPTSALDPELRLEV-EKLIlqnrELGMTQIVVTHD 192
Cdd:PRK10636 455 DEPTNHLDLDMRQALtEALI----DFEGALVVVSHD 486
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
10-193 |
2.93e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 47.28 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 10 RFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP---LDELekRNLLGFVFQDFQLF 86
Cdd:PLN03232 1245 RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAkfgLTDL--RRVLSIIPQSPVLF 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 87 PHlTVLENLtlSPIKTKNFTK-----EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPT 161
Cdd:PLN03232 1323 SG-TVRFNI--DPFSEHNDADlwealERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399
|
170 180 190
....*....|....*....|....*....|..
gi 568064700 162 SALDPELRLEVEKLILQNRElGMTQIVVTHDL 193
Cdd:PLN03232 1400 ASVDVRTDSLIQRTIREEFK-SCTMLVIAHRL 1430
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-204 |
4.43e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 46.26 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRfgEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELPLDELEKRNLLGFVF 80
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 -----QDFQLFPHLTVLENLTLSPIKT-KNFTKEDAEKKAISLLTRLGLAEHVNAYPY-----SLSGGQKQRVALARAMM 149
Cdd:PRK10982 328 vteerRSTGIYAYLDIGFNSLISNIRNyKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHrtqigSLSGGNQQKVIIGRWLL 407
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568064700 150 IDPEIIGYDEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQFAENIADTIL 204
Cdd:PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL 462
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
25-206 |
5.23e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 44.66 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 25 PEKQILAIVGPSGGGKTTLLRmlagletidsgDIIYNgeelpldelekrnllgfVFQDFqlfphltvlenltlSPIKTKN 104
Cdd:cd03227 19 GEGSLTIITGPNGSGKSTILD-----------AIGLA-----------------LGGAQ--------------SATRRRS 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 105 FTKEDAEKKAISL---LTRLGLaehvnaypyslSGGQKQRVALARAMMI-----DPEIIgYDEPTSALDPELRLEVEKLI 176
Cdd:cd03227 57 GVKAGCIVAAVSAeliFTRLQL-----------SGGEKELSALALILALaslkpRPLYI-LDEIDRGLDPRDGQALAEAI 124
|
170 180 190
....*....|....*....|....*....|
gi 568064700 177 LQNRELGMTQIVVTHDLQFAENiADTILKV 206
Cdd:cd03227 125 LEHLVKGAQVIVITHLPELAEL-ADKLIHI 153
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-204 |
1.28e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 43.85 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRmlagletidsgDIIYNGEELPLDELEKRNllgfvfqdfqlFPHLTVLenlt 96
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------EGLYASGKARLISFLPKF-----------SRNKLIF---- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 97 lspiktknftkedaeKKAISLLTRLGLAE-HVNAYPYSLSGGQKQRVALARAMMIDPE--IIGYDEPTSALDPELRLEVE 173
Cdd:cd03238 65 ---------------IDQLQFLIDVGLGYlTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLL 129
|
170 180 190
....*....|....*....|....*....|.
gi 568064700 174 KLILQNRELGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03238 130 EVIKGLIDLGNTVILIEHNLDVLSS-ADWII 159
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-194 |
1.43e-05 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 44.46 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE--KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDsGDIIYNG---EELPLDELekRNLL 76
Cdd:cd03289 3 MTVKDLTAKYTEggNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGvswNSVPLQKW--RKAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHlTVLENLTlspiKTKNFTKEDAEKKAisllTRLGLAEHVNAYP-----------YSLSGGQKQRVALA 145
Cdd:cd03289 80 GVIPQKVFIFSG-TFRKNLD----PYGKWSDEEIWKVA----EEVGLKSVIEQFPgqldfvlvdggCVLSHGHKQLMCLA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568064700 146 RAMMIDPEIIGYDEPTSALDPeLRLEVEKLILQNRELGMTQIVVTHDLQ 194
Cdd:cd03289 151 RSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-207 |
1.52e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 44.78 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIY---------NGEELPLDele 71
Cdd:PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFpgnwqlawvNQETPALP--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 kRNLLGFVFQDFQLFPHLTVlenlTLSPIKTKN--------FTKEDA------EKKAISLLTRLGLAEHVNAYPYS-LSG 136
Cdd:PRK10636 78 -QPALEYVIDGDREYRQLEA----QLHDANERNdghaiatiHGKLDAidawtiRSRAASLLHGLGFSNEQLERPVSdFSG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568064700 137 GQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLIlqnRELGMTQIVVTHDLQFAENIADTILKVQ 207
Cdd:PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL---KSYQGTLILISHDRDFLDPIVDKIIHIE 220
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-195 |
1.83e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 1 MLELKNISKRFGEKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIyngeelpLDELEKrnlLGFVF 80
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS-------LDPNER---LGKLR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 81 QDFQLFPHLTVLE-----NLTLSPIKTK--------NFTKED------------------AEKKAISLLTRLGLAEHVNA 129
Cdd:PRK15064 71 QDQFAFEEFTVLDtvimgHTELWEVKQErdriyalpEMSEEDgmkvadlevkfaemdgytAEARAGELLLGVGIPEEQHY 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 130 YPYS-LSGGQKQRVALARAMMIDPEIIGYDEPTSALDPE-LR-LEVeklILQNRELGMtqIVVTHDLQF 195
Cdd:PRK15064 151 GLMSeVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINtIRwLED---VLNERNSTM--IIISHDRHF 214
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
30-165 |
5.06e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.57 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 30 LAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELekRNLLGFVFQDFQLFPHlTVLENLtlSPIKTKNFT 106
Cdd:PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGcdiSKFGLMDL--RKVLGIIPQAPVLFSG-TVRFNL--DPFNEHNDA 1342
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568064700 107 K-----EDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALD 165
Cdd:PLN03130 1343 DlweslERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
133-206 |
1.15e-04 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 41.47 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 133 SLSGGQKQRVALARamMIDPEIIG----YDEPTSALDPElrlEVEKLI--LQN-RELGMTQIVVTHDLQFAENiADTILK 205
Cdd:cd03270 137 TLSGGEAQRIRLAT--QIGSGLTGvlyvLDEPSIGLHPR---DNDRLIetLKRlRDLGNTVLVVEHDEDTIRA-ADHVID 210
|
.
gi 568064700 206 V 206
Cdd:cd03270 211 I 211
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
77-201 |
1.33e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.12 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPhltvLENL--TLSPIKTKNFTKE---DAEKKAISLLTRLGLaehvnayPY--------SLSGGQKQRVA 143
Cdd:PRK00635 418 GKTFAEFQQMS----LQELfiFLSQLPSKSLSIEevlQGLKSRLSILIDLGL-------PYltperalaTLSGGEQERTA 486
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 144 LARAMMIDPEIIGY--DEPTSALDPELRLEVEKLILQNRELGMTQIVVTHDLQ---FAENIAD 201
Cdd:PRK00635 487 LAKHLGAELIGITYilDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQmisLADRIID 549
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
13-165 |
1.66e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 41.70 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 13 EKQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLE--TIDSGDIIYNGEELPLDEL------------EKRNLLGF 78
Cdd:NF040905 272 ERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSygRNISGTVFKDGKEVDVSTVsdaidaglayvtEDRKGYGL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 79 VFQDfqlfphlTVLENLT---LSPIKTKNFTKEDAE-KKAISLLTRLGL-AEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:NF040905 352 NLID-------DIKRNITlanLGKVSRRGVIDENEEiKVAEEYRKKMNIkTPSVFQKVGNLSGGNQQKVVLSKWLFTDPD 424
|
170
....*....|..
gi 568064700 154 IIGYDEPTSALD 165
Cdd:NF040905 425 VLILDEPTRGID 436
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
29-58 |
2.21e-04 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 39.78 E-value: 2.21e-04
10 20 30
....*....|....*....|....*....|...
gi 568064700 29 ILAIVGPSGGGKTTLLRMLA---GLETIDSGDI 58
Cdd:cd02020 1 IIAIDGPAGSGKSTVAKLLAkklGLPYLDTGGI 33
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
23-168 |
2.49e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 41.30 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 23 KVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEELP---LDELekRNLLGFVFQDFQLFPHlTVLEN----L 95
Cdd:PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGaygLREL--RRQFSMIPQDPVLFDG-TVRQNvdpfL 1408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 96 TLSPiktknftkedAEKKAIslLTRLGLAEHVNAYP-------------YSLsgGQKQRVALARAMMI-DPEIIGYDEPT 161
Cdd:PTZ00243 1409 EASS----------AEVWAA--LELVGLRERVASESegidsrvleggsnYSV--GQRQLMCMARALLKkGSGFILMDEAT 1474
|
....*..
gi 568064700 162 SALDPEL 168
Cdd:PTZ00243 1475 ANIDPAL 1481
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
133-194 |
5.21e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.38 E-value: 5.21e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 133 SLSGGQKQRVALARamMIDPEIIG--Y--DEPTSALDPElrlEVEKLI--LQN-RELGMTQIVVTHDLQ 194
Cdd:TIGR00630 488 TLSGGEAQRIRLAT--QIGSGLTGvlYvlDEPSIGLHQR---DNRRLIntLKRlRDLGNTLIVVEHDED 551
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-165 |
7.31e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 39.51 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNISKRFGE--KQIISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNG---EELPLDELEKRnlL 76
Cdd:cd03288 20 IKIHDLCVRYENnlKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGidiSKLPLHTLRSR--L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 77 GFVFQDFQLFPHlTVLENLTLSPIKTKNFTKEDAEKKAISLLTRL---GLAEHVNAYPYSLSGGQKQRVALARAMMIDPE 153
Cdd:cd03288 98 SIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSlpgGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176
|
170
....*....|..
gi 568064700 154 IIGYDEPTSALD 165
Cdd:cd03288 177 ILIMDEATASID 188
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-200 |
1.70e-03 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 38.26 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 17 ISDLNLKVPEKQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIYNGEelpldelekrnlLGFVFQDFQLFPHLTVLENLT 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------------VSVIAISAGLSGQLTGIENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 97 LSPIkTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYSLSGGQKQRVALARAMMIDPEIIGYDEPTSALDPELRLEVEKLI 176
Cdd:PRK13546 108 FKML-CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186
|
170 180
....*....|....*....|....*...
gi 568064700 177 LQNRELGMTQIVVTHDL----QFAENIA 200
Cdd:PRK13546 187 YEFKEQNKTIFFVSHNLgqvrQFCTKIA 214
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
32-178 |
2.00e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 38.67 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 32 IVGPSGGGKTTLLRMLAGleTID-----SGDIIYNGEElpLDELEKRNLLGFVFQDFQLFPHLTVLENLTLSPIKTKNFT 106
Cdd:PLN03140 196 LLGPPSSGKTTLLLALAG--KLDpslkvSGEITYNGYR--LNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 107 KED-------AEKKA-------ISLLTRLGLAEHVNA---YPYSL---------------------SGGQKQRVALARaM 148
Cdd:PLN03140 272 RYDllselarREKDAgifpeaeVDLFMKATAMEGVKSsliTDYTLkilgldickdtivgdemirgiSGGQKKRVTTGE-M 350
|
170 180 190
....*....|....*....|....*....|.
gi 568064700 149 MIDP-EIIGYDEPTSALDPELRLEVEKLILQ 178
Cdd:PLN03140 351 IVGPtKTLFMDEISTGLDSSTTYQIVKCLQQ 381
|
|
| PRK04182 |
PRK04182 |
cytidylate kinase; Provisional |
29-58 |
2.30e-03 |
|
cytidylate kinase; Provisional
Pssm-ID: 235244 [Multi-domain] Cd Length: 180 Bit Score: 37.48 E-value: 2.30e-03
10 20 30
....*....|....*....|....*....|...
gi 568064700 29 ILAIVGPSGGGKTTLLRMLA---GLETIDSGDI 58
Cdd:PRK04182 2 IITISGPPGSGKTTVARLLAeklGLKHVSAGEI 34
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
27-81 |
2.37e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 36.80 E-value: 2.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 568064700 27 KQILAIVGPSGGGKTTLLRMLAGlETIDSGDIIY-NGEELPLDELEKRNLLGFVFQ 81
Cdd:pfam13173 2 RKILVITGPRQVGKTTLLLQLIK-ELLPPENILYiNLDDPRLLKLADFELLELFLE 56
|
|
| AAA_PrkA |
smart00763 |
PrkA AAA domain; This is a family of PrkA bacterial and archaeal serine kinases approximately ... |
25-69 |
2.79e-03 |
|
PrkA AAA domain; This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Pssm-ID: 214810 Cd Length: 361 Bit Score: 38.04 E-value: 2.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 568064700 25 PEKQILAIVGPSGGGKTTLLRML-AGLETIDSGDI--IY----NGEELPLDE 69
Cdd:smart00763 76 ERKQILYLLGPVGGGKSSLVECLkRGLEEYSKTDEgrIYtfkwNGEESPMHE 127
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-193 |
4.66e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 36.91 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 2 LELKNIsKRFGEKQIIsDLnlkvpEKQILAIVGPSGGGKTTLLR-MLAGL------ETIDSGDIIYNGEELPLDELE--- 71
Cdd:COG0419 5 LRLENF-RSYRDTETI-DF-----DDGLNLIVGPNGAGKSTILEaIRYALygkarsRSKLRSDLINVGSEEASVELEfeh 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 72 -KRNLLGFVFQ-DFQLFPHLT------VLENL----TLSPIKTKNFTKEDAEKKAISLLTRLGLAEHVNAYPYS------ 133
Cdd:COG0419 78 gGKRYRIERRQgEFAEFLEAKpserkeALKRLlgleIYEELKERLKELEEALESALEELAELQKLKQEILAQLSgldpie 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568064700 134 -LSGGQKQRVALAR--AMMIDpeiigydepTSALDPELRLEVEKLIlqnRELGmtqiVVTHDL 193
Cdd:COG0419 158 tLSGGERLRLALADllSLILD---------FGSLDEERLERLLDAL---EELA----IITHVI 204
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
133-204 |
5.03e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 37.31 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568064700 133 SLSGGQKQRVALARAmmidpeiIG-------Y--DEPTSALDPelRlEVEKLI--LQN-RELGMTQIVVTHDlqfaeniA 200
Cdd:COG0178 485 TLSGGEAQRIRLATQ-------IGsglvgvlYvlDEPSIGLHQ--R-DNDRLIetLKRlRDLGNTVIVVEHD-------E 547
|
....
gi 568064700 201 DTIL 204
Cdd:COG0178 548 DTIR 551
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
132-204 |
5.14e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 36.82 E-value: 5.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568064700 132 YSLSGGQKQRVALARAM-MIDPEIIGY--DEPTSALDPElrlEVEKLI--LQN-RELGMTQIVVTHDLQFAENiADTIL 204
Cdd:cd03271 168 TTLSGGEAQRIKLAKELsKRSTGKTLYilDEPTTGLHFH---DVKKLLevLQRlVDKGNTVVVIEHNLDVIKC-ADWII 242
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
30-67 |
5.27e-03 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 36.58 E-value: 5.27e-03
10 20 30
....*....|....*....|....*....|....*....
gi 568064700 30 LAIVGPSGGGKTTLLRMLAGLETIDSGDII-YNGEELPL 67
Cdd:PRK15177 16 IGILAAPGSGKTTLTRLLCGLDAPDEGDFIgLRGDALPL 54
|
|
| PrkA |
COG2766 |
Predicted Ser/Thr protein kinase [Signal transduction mechanisms]; |
4-51 |
6.46e-03 |
|
Predicted Ser/Thr protein kinase [Signal transduction mechanisms];
Pssm-ID: 442049 [Multi-domain] Cd Length: 675 Bit Score: 37.12 E-value: 6.46e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 568064700 4 LKNISKRFGEkqiisdlnlkvpEKQILAIVGPSGGGKTTLLRML-AGLE 51
Cdd:COG2766 97 LRSAARGLGE------------RKRILLLHGPVGSGKSTLARCLkRGLE 133
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
27-60 |
9.05e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 35.01 E-value: 9.05e-03
10 20 30
....*....|....*....|....*....|....
gi 568064700 27 KQILAIVGPSGGGKTTLLRMLAGLETIDSGDIIY 60
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLEQLPEVRDSVVF 38
|
|
| |
