NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|585309321|ref|WP_024190987|]
View 

S/F1C fimbrial minor subunit SfaD, partial [Escherichia coli]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-170 2.16e-46

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 149.42  E-value: 2.16e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   1 MLFLLSPAALAGNhwhvmlpgGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVS 80
Cdd:COG3539   11 ALALSAAAAAAAD--------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDAGTS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  81 QRVGISFYGVSDIHEPELLSVEEENDASdGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKA 160
Cdd:COG3539   83 NSVKVTFTGTADSANPGLLANTGSGGAS-GVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGATVTAGSF 161

                        170
                 ....*....|
gi 585309321 161 NGQVWFSLTY 170
Cdd:COG3539  162 NATATFTIDY 171
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-170 2.16e-46

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 149.42  E-value: 2.16e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   1 MLFLLSPAALAGNhwhvmlpgGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVS 80
Cdd:COG3539   11 ALALSAAAAAAAD--------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDAGTS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  81 QRVGISFYGVSDIHEPELLSVEEENDASdGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKA 160
Cdd:COG3539   83 NSVKVTFTGTADSANPGLLANTGSGGAS-GVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGATVTAGSF 161

                        170
                 ....*....|
gi 585309321 161 NGQVWFSLTY 170
Cdd:COG3539  162 NATATFTIDY 171
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 1-170 8.48e-28

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 101.97  E-value: 8.48e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   1 MLFLLSPAALAGNHWHVMLPG-GNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVV 79
Cdd:PRK15209   4 VVFALSALALTSTSVFAAESGdGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  80 SQRVGISFYGVSDIHEPELLSVEEENDASDGIAIALFNESGELVKLNQpPENWVHLTRGDMKLHMQARYKATHYPVTGGK 159
Cdd:PRK15209  84 NKKVNVSFNGVGDADDSTLVSVSTEAGAATGVGIGIYDNANTLVELNT-GKSTTTLAAGQTVLYFTANYVSTKDTVTTGY 162

                        170
                 ....*....|.
gi 585309321 160 ANGQVWFSLTY 170
Cdd:PRK15209 163 GNAEVDFNLSY 173
Fimbrial pfam00419
Fimbrial protein;
26-170 2.99e-17

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 74.01  E-value: 2.99e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   26 FQGKI--IAEACSLALSDRQmTVDMGQLSSNRFHAAGEYGDPVGFDIHLQdCSTVVSQR-VGISFYGVSDIHEPELLSVE 102
Cdd:pfam00419   3 FTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITLE-CSSGSSAVkVTVGLFGTADASSPNLLLTG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585309321  103 EENDASDGIAIALFNESGELVKLNQP-PENWVHLTRGDMKLH-MQARYKATHY-PVTGGKANGQVWFSLTY 170
Cdd:pfam00419  81 NGAGAATGVGIRLYDANGGALPPNNGtSSIPVSATAAVATGItFTASLVATTGgTPTAGDFNATATIVVDY 151
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-170 2.16e-46

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 149.42  E-value: 2.16e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   1 MLFLLSPAALAGNhwhvmlpgGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVS 80
Cdd:COG3539   11 ALALSAAAAAAAD--------GTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDAGTS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  81 QRVGISFYGVSDIHEPELLSVEEENDASdGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKA 160
Cdd:COG3539   83 NSVKVTFTGTADSANPGLLANTGSGGAS-GVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGATVTAGSF 161

                        170
                 ....*....|
gi 585309321 161 NGQVWFSLTY 170
Cdd:COG3539  162 NATATFTIDY 171
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 1-170 8.48e-28

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 101.97  E-value: 8.48e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   1 MLFLLSPAALAGNHWHVMLPG-GNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVV 79
Cdd:PRK15209   4 VVFALSALALTSTSVFAAESGdGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  80 SQRVGISFYGVSDIHEPELLSVEEENDASDGIAIALFNESGELVKLNQpPENWVHLTRGDMKLHMQARYKATHYPVTGGK 159
Cdd:PRK15209  84 NKKVNVSFNGVGDADDSTLVSVSTEAGAATGVGIGIYDNANTLVELNT-GKSTTTLAAGQTVLYFTANYVSTKDTVTTGY 162

                        170
                 ....*....|.
gi 585309321 160 ANGQVWFSLTY 170
Cdd:PRK15209 163 GNAEVDFNLSY 173
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
17-170 9.00e-28

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 101.86  E-value: 9.00e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  17 VMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGD-PVGFDIHLQDCSTVVSQRVGISFYGVSDIHE 95
Cdd:PRK15200  22 VMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFAPvSVPFSLRLISCSAEVWRHVGIAFAGVTPAED 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585309321  96 PELLSVEEENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK15200 102 PHVFLASGEGIGNAGIGLALFDDQQRQIIPNTLPLHYAPILTSEMTLHFTARYRAISENMTPGRIHSEVWFTLVY 176
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
2-170 6.79e-19

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 79.23  E-value: 6.79e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   2 LFLLSPAALAGNHWHVMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQ 81
Cdd:PRK15194  13 LLFVAGAAYAADPTPVSVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQLNDCDPVVAA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  82 RVGISFYGVSDIHEPELLSVEEENDASD----GIAIaLFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTG 157
Cdd:PRK15194  93 TAAVAFSGQADATNDNLLAVASSTNTTTatgvGIEI-LDNTSSILKPDGATFSANQNLIEGTNTLHFSARYKATGTSASA 171

                        170
                 ....*....|...
gi 585309321 158 GKANGQVWFSLTY 170
Cdd:PRK15194 172 GQANADATFIMKY 184
PRK15260 PRK15260
fimbrial protein SteF; Provisional
 15-170 1.96e-17

fimbrial protein SteF; Provisional


Pssm-ID: 185168  Cd Length: 178  Bit Score: 75.11  E-value: 1.96e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  15 WHV--MLPGG--NMRFQGKIIAEACSLALSDRQM-TVDMGQLSSNRFHAAGEyGDPVGFDIHLQDCSTVVSQRVGISFYG 89
Cdd:PRK15260  18 WAVcnTLPAAtpNVHYSGKLVAGACNLVVDNDTMaTVDFHTIGSDNFDASGQ-TTPVPFTLSLQDCKTALANGVLVTFQG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  90 VSDIHEPELLSVEEENDASdGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARY-KATHYPVTGGKANGQVWFSL 168
Cdd:PRK15260  97 VEDSTLPGLLALEPSSEAS-GFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLqKYAGEEVMPGEFSGSATVSF 175


                 ..
gi 585309321 169 TY 170
Cdd:PRK15260 176 EY 177
Fimbrial pfam00419
Fimbrial protein;
26-170 2.99e-17

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 74.01  E-value: 2.99e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   26 FQGKI--IAEACSLALSDRQmTVDMGQLSSNRFHAAGEYGDPVGFDIHLQdCSTVVSQR-VGISFYGVSDIHEPELLSVE 102
Cdd:pfam00419   3 FTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITLE-CSSGSSAVkVTVGLFGTADASSPNLLLTG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585309321  103 EENDASDGIAIALFNESGELVKLNQP-PENWVHLTRGDMKLH-MQARYKATHY-PVTGGKANGQVWFSLTY 170
Cdd:pfam00419  81 NGAGAATGVGIRLYDANGGALPPNNGtSSIPVSATAAVATGItFTASLVATTGgTPTAGDFNATATIVVDY 151
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 23-170 2.40e-15

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 69.73  E-value: 2.40e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  23 NMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQrVGISFYGVSDIHEPELLSVE 102
Cdd:PRK15190  29 NLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAG-AKIWFTGEPDPDNPALLAIT 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 585309321 103 E-----ENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK15190 108 DtgmgsGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQY 180
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 22-170 7.45e-15

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 68.21  E-value: 7.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  22 GNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQrVGISFYGVSDIHEPELLSV 101
Cdd:PRK15191  23 GRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASG-VTVSFSGAADSRNTDLLAL 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585309321 102 EEENDASDGIAIALFNESGELVKLNQpPENWVHLTRGDMKLHMQ--ARYKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK15191 102 TAGESDASGIGIALYDQNKTLIPLGQ-ESDVVTLSPGQASAHLQfyARYLADGGAVTPGDANASATFILAY 171
lpfA PRK15289
fimbrial protein; Provisional
 3-170 4.55e-14

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 66.52  E-value: 4.55e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   3 FLLSPAALAGnhwHVMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQr 82
Cdd:PRK15289  10 FTLASLMLAG---HALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQ- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  83 VGISFYGVSDIHEPELLSVEEEND--------------ASDGIAIALFNES-GELVKLNQPPENWVHLTRGDMKLHMQAR 147
Cdd:PRK15289  86 AAVRFDGTEAPGGDGDLKVGTPLTagnpgdftgtgqaiAATGVGIRIFNQSdNSQVKLYNDSAYTAIDAEGKAEMKFIAR 165

                        170       180
                 ....*....|....*....|...
gi 585309321 148 YKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK15289 166 YVATNATVTAGTANADSQFTVEY 188
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 21-170 3.46e-12

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 61.37  E-value: 3.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  21 GGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGD-PVGFDIHLQDCSTVVSQRVGISFYGVSDIHEPELL 99
Cdd:PRK15187  31 GGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGMVANqKEDFTIKLEDCDTQTSQNAAVIFNGQQDANQPGSL 110

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585309321 100 SVEEENDASDGIAIALFNESGELVKLNQPPENwVHLTRGDMKLHMQARYKATHyPVTGGKANGQVWFSLTY 170
Cdd:PRK15187 111 ANTAGAGSATNVALQLYGPDGQALNIGESSST-VTLNDGENVIPLSVDYIATG-TATAGNVTATATFSMVY 179
PRK15205 PRK15205
long polar fimbrial protein LpfE; Provisional
 20-170 8.97e-12

long polar fimbrial protein LpfE; Provisional


Pssm-ID: 237923  Cd Length: 176  Bit Score: 60.25  E-value: 8.97e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  20 PGGNMRFQGKIIAEACSLALSDrqMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQRVGISfyGVSDIHEPELL 99
Cdd:PRK15205  28 PAGDIHFTITIKAKACELEKDS--LEVDMGTMVLQKPVKVGTELNQKNFSIGLKDCDGISKASVTMD--GSPDPDDPSLF 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 585309321 100 SVEEenDASDGIAIALFNESGElvklNQPPEN-------WVHLTRGDMKLHMQARYKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK15205 104 ALDA--GGATGVALKIKTSKGT----QQYPKStdgtpveWAINGDGTTQLNYIASYVPVNADATVGTANATVNFSVTY 175
PRK15210 PRK15210
fimbrial protein;
22-171 3.64e-11

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 58.94  E-value: 3.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  22 GNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDC-----------STVVSQRVGISFYGV 90
Cdd:PRK15210  35 GKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCafdpnipdtagSAGKMSKVTVSFSGT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  91 SDIHEPELLSveeeNDASDGIAIALF-NESGELVKLNQP-PE-NWVHLTRGDMKLHMQARYKATHYPVTGGKANGQVWFS 167
Cdd:PRK15210 115 ANTSKKAYTT----SGSAQHVGVQLLkSDNTSIIEPNTPmPDgDAQQLQAGNNELNFFARLIALDNGVTPGDFNASVTYT 190


                 ....
gi 585309321 168 LTYL 171
Cdd:PRK15210 191 LKYL 194
PRK09733 PRK09733
fimbrial-like protein;
22-170 3.63e-10

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 56.11  E-value: 3.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  22 GNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHaAGEYGDPVGFDIHLQDC----STVVSQRVGISFYGVS-DIHEP 96
Cdd:PRK09733  26 GIVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVLK-SDQKSLAEPFTIHLQDCmlsqGGTTYSKAKVTFTTANtMTGQS 104

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 585309321  97 ELL--SVEEENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVTGGKANGQVWFSLTY 170
Cdd:PRK09733 105 DLLknTKETEIGGATGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKIAY 180
PRK15296 PRK15296
fimbrial protein SthA;
26-170 2.17e-09

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 53.94  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  26 FQGKIIAEACSLALS-DRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDC---STVVSQRVGISFYGVSDIHEPELL-- 99
Cdd:PRK15296  28 FNGKIYDQACTVQVNgSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCpeaGTGVPTQAMFRFHGATDDSNPTYFkn 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 585309321 100 SVEEENDASDGIAIALFNESGELVKLNQ-------PPENwvhltrGDMKLHMQARYKAT-HYPVTGGKANGQVWFSLTY 170
Cdd:PRK15296 108 ADEGSETGAAGVGISIQNASHSDVTDNTddaavnlPTDG------STADFTYYAAMANDgSATVTGGDVSTQVTYTVSY 180
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 5-170 5.87e-08

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 50.09  E-value: 5.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321   5 LSPAALAGNhwhvmLPGGNMRFQGKIIAEACSLALSDRQMTVDmgQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQRVG 84
Cdd:PRK15300  17 LSPAALADT-----AKDGTVHITGLIKQNACTVKTDSVEVTLQ--EEFASLFTAAGQTAGDTDFTIELENCDANVYSSVQ 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  85 ISFYGVSDIHEPELLsvEEENDASDgIAIALFNESGELVKLN--QPPENWVHL--TRGDMKLHM--QARYKATHYPVTGG 158
Cdd:PRK15300  90 ARFEGTLDGTDATIL--KNEDDAEN-IGVQILDKTSTPMTFNdlQAWSAAVALptAEGVTELSMpfTARYIATAVPVKSG 166

                        170
                 ....*....|..
gi 585309321 159 KANGQVWFSLTY 170
Cdd:PRK15300 167 TVDATATFYLQY 178
PRK15288 PRK15288
putative minor fimbrial subunit StfG; Provisional
 23-146 1.70e-04

putative minor fimbrial subunit StfG; Provisional


Pssm-ID: 185188 [Multi-domain]  Cd Length: 176  Bit Score: 40.02  E-value: 1.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585309321  23 NMRFQGKIIAEACSLALSDRQMT-VDMGQLSSNRFHAAGEYG-DPVGFDihLQDCSTVVSQRVGISFYGVSDIHEPELLS 100
Cdd:PRK15288  28 NLHFSGSLVASPCTLTMQGTGIAeVDFSSLDSSDFTPDGQSArKPLVFE--LTDCDSALSNGVQVTFTGTEATGMRGILA 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 585309321 101 VEEENDASdGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQA 146
Cdd:PRK15288 106 IDSYSGAS-GIGIGIETLSGVPVGMNDEEGAIFTLVTGKNTLSLNA 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH