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Conserved domains on  [gi|636783249|ref|WP_024319468|]
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phosphatase PAP2/dual specificity phosphatase family protein [Rhizobium ruizarguesonis]

Protein Classification

phosphatase PAP2/dual specificity phosphatase family protein( domain architecture ID 12932297)

bifunctional phosphatase PAP2/dual specificity phosphatase (DSP) family protein containing a C-terminal DSP domain that may dephosphorylate phosphotyrosine, phosphoserine, and phosphothreonine residues in target proteins, and an N-terminal phosphatase PAP2 domain that may be a histidine phosphatase that catalyzes the dephosphorylation of phospholipids

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTP_DSP_cys super family cl28904
cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily; This ...
308-439 2.51e-28

cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily; This superfamily is composed of cys-based phosphatases, which includes classical protein tyrosine phosphatases (PTPs) as well as dual-specificity phosphatases (DUSPs or DSPs). They are characterized by a CxxxxxR conserved catalytic loop (where C is the catalytic cysteine, x is any amino acid, and R is an arginine). PTPs are part of the tyrosine phosphorylation/dephosphorylation regulatory mechanism, and are important in the response of the cells to physiologic and pathologic changes in their environment. DUSPs show more substrate diversity (including RNA and lipids) and include pTyr, pSer, and pThr phosphatases.


The actual alignment was detected with superfamily member cd14527:

Pssm-ID: 475123 [Multi-domain]  Cd Length: 136  Bit Score: 108.52  E-value: 2.51e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 308 RMPVSVVITDGVHLGRFPRRHEADRFAT-VIDMTGELQRPGGtRARWCSFPTLDLAALDKIQTLAAANLIETSRQQG-PI 385
Cdd:cd14527    1 RLPAYDEVLPGLYLGRWPSADELPPGVPaVLDLTAELPRPRK-RQAYRCVPLLDLVAPTPEQLERAVAWIEELRAQGgPV 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 636783249 386 LVCCALGFQRSACVIVRWLLITRRCEDPAEAVRRIERAGRRVHLPVESLHAVTE 439
Cdd:cd14527   80 LVHCALGYGRSATVVAAWLLAYGRAKSVAEAEALIRAARPQVVLNPAQRKALEA 133
PAP2_Aur1_like cd03386
PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of ...
53-205 8.20e-24

PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.


:

Pssm-ID: 239481  Cd Length: 186  Bit Score: 97.77  E-value: 8.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249  53 WESAIPFLGWTIIPYWSINLFYALCLFINTV---PRDVDRLARRYLTIQ-IIAVACFIAFPLEATFVRPATSGLPGFM-- 126
Cdd:cd03386   20 LQRHIPLDPLAWFPYGSLHFLVPLALLAWLFlfrPPGTLRRFRRALGLAnLLGLLIYLLFPTAPPRYEPPYGLILLVLlm 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 127 ------FAVLGGFDKPFNQAPSLHIALLVVIWDHLRGRLPRKVRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLGLFAI 200
Cdd:cd03386  100 ygsagyTSGFGGFDNPFNAFPSLHVAWAVLAALFLWRHRRRLLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALALLSF 179

                 ....*
gi 636783249 201 WLFPR 205
Cdd:cd03386  180 YLARR 184
 
Name Accession Description Interval E-value
DSP_bac cd14527
unknown subfamily of bacterial and plant dual specificity protein phosphatases; This subfamily ...
308-439 2.51e-28

unknown subfamily of bacterial and plant dual specificity protein phosphatases; This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).


Pssm-ID: 350376 [Multi-domain]  Cd Length: 136  Bit Score: 108.52  E-value: 2.51e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 308 RMPVSVVITDGVHLGRFPRRHEADRFAT-VIDMTGELQRPGGtRARWCSFPTLDLAALDKIQTLAAANLIETSRQQG-PI 385
Cdd:cd14527    1 RLPAYDEVLPGLYLGRWPSADELPPGVPaVLDLTAELPRPRK-RQAYRCVPLLDLVAPTPEQLERAVAWIEELRAQGgPV 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 636783249 386 LVCCALGFQRSACVIVRWLLITRRCEDPAEAVRRIERAGRRVHLPVESLHAVTE 439
Cdd:cd14527   80 LVHCALGYGRSATVVAAWLLAYGRAKSVAEAEALIRAARPQVVLNPAQRKALEA 133
PAP2_Aur1_like cd03386
PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of ...
53-205 8.20e-24

PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.


Pssm-ID: 239481  Cd Length: 186  Bit Score: 97.77  E-value: 8.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249  53 WESAIPFLGWTIIPYWSINLFYALCLFINTV---PRDVDRLARRYLTIQ-IIAVACFIAFPLEATFVRPATSGLPGFM-- 126
Cdd:cd03386   20 LQRHIPLDPLAWFPYGSLHFLVPLALLAWLFlfrPPGTLRRFRRALGLAnLLGLLIYLLFPTAPPRYEPPYGLILLVLlm 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 127 ------FAVLGGFDKPFNQAPSLHIALLVVIWDHLRGRLPRKVRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLGLFAI 200
Cdd:cd03386  100 ygsagyTSGFGGFDNPFNAFPSLHVAWAVLAALFLWRHRRRLLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALALLSF 179

                 ....*
gi 636783249 201 WLFPR 205
Cdd:cd03386  180 YLARR 184
CDC14 COG2453
Protein-tyrosine phosphatase [Signal transduction mechanisms];
321-429 1.02e-11

Protein-tyrosine phosphatase [Signal transduction mechanisms];


Pssm-ID: 441989 [Multi-domain]  Cd Length: 140  Bit Score: 62.30  E-value: 1.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 321 LGRFPRRHEAD----RFATVIDMTGELQRPGGTRA----RWCSFPTLDLAALDKIQTLAAANLIETSRQQG-PILVCCAL 391
Cdd:COG2453   10 GGPLPGGGEADlkreGIDAVVSLTEEEELLLGLLEeaglEYLHLPIPDFGAPDDEQLQEAVDFIDEALREGkKVLVHCRG 89
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 636783249 392 GFQRSACVIVRWLLitRRCEDPAEAVRRIERAGRRVHL 429
Cdd:COG2453   90 GIGRTGTVAAAYLV--LLGLSAEEALARVRAARPGAVE 125
PRK12361 PRK12361
hypothetical protein; Provisional
226-422 1.09e-10

hypothetical protein; Provisional


Pssm-ID: 183473 [Multi-domain]  Cd Length: 547  Bit Score: 63.49  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 226 GFYYLCGAIAFLGLgALCTPLSAAALLLLWPAVALAIIALGYFGAGPQIFQKRVDGRATLASRWLLAPYRLGA-LINIrl 304
Cdd:PRK12361   8 KYYYLAGALLLLYL-AVTGPSILLTFLFAWISLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWVFIPFLLGTrLYNA-- 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 305 WTRR---MPVSVVITDGVHLGR--FPR---RHEADRFATVIDMTGELQRPG----GTRARWCSFPTLDLAALDKIQTLAA 372
Cdd:PRK12361  85 WARKrdsVPAIQKIDENLYLGCrlFPAdleKLKSNKITAILDVTAEFDGLDwsltEEDIDYLNIPILDHSVPTLAQLNQA 164
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 636783249 373 ANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRCEDPAEAVRRIER 422
Cdd:PRK12361 165 INWIHRQVRANkSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQ 215
DSPc smart00195
Dual specificity phosphatase, catalytic domain;
371-420 2.19e-05

Dual specificity phosphatase, catalytic domain;


Pssm-ID: 214551 [Multi-domain]  Cd Length: 138  Bit Score: 44.20  E-value: 2.19e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 636783249   371 AAANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRC--EDPAEAVRRI 420
Cdd:smart00195  66 EAVEFIEDAESKGgKVLVHCQAGVSRSATLIIAYLMKTRNMslNDAYDFVKDR 118
DSPc pfam00782
Dual specificity phosphatase, catalytic domain; Ser/Thr and Tyr protein phosphatases. The ...
372-410 1.36e-04

Dual specificity phosphatase, catalytic domain; Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region.


Pssm-ID: 395632 [Multi-domain]  Cd Length: 127  Bit Score: 41.48  E-value: 1.36e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 636783249  372 AANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRC 410
Cdd:pfam00782  58 AVEFIDDARQKGgKVLVHCQAGISRSATLIIAYLMKTRNL 97
PAP2_3 pfam14378
PAP2 superfamily;
84-202 1.82e-03

PAP2 superfamily;


Pssm-ID: 433919  Cd Length: 190  Bit Score: 39.24  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249   84 PRDVDRLARRYLTIQIIAVACFIAFPLEATFVRPATSGLPGFMFAVL---------------GGFDKPFNQAPSLHIA-- 146
Cdd:pfam14378  56 PRRYREFRTTFLVATLLGLLVFTLFPAAPPRLLPPAGFVDTVAAASLvgwlrdgtsraplglGGITNGLAAMPSLHVAwa 135
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 636783249  147 --LLVVIWDHLRGRLprkVRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLGLFAIWL 202
Cdd:pfam14378 136 llCALALWRLRRTRI---LRWLAVAYNVLMIVSTVATGNHYLLDVVAGVALALAAIAL 190
 
Name Accession Description Interval E-value
DSP_bac cd14527
unknown subfamily of bacterial and plant dual specificity protein phosphatases; This subfamily ...
308-439 2.51e-28

unknown subfamily of bacterial and plant dual specificity protein phosphatases; This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).


Pssm-ID: 350376 [Multi-domain]  Cd Length: 136  Bit Score: 108.52  E-value: 2.51e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 308 RMPVSVVITDGVHLGRFPRRHEADRFAT-VIDMTGELQRPGGtRARWCSFPTLDLAALDKIQTLAAANLIETSRQQG-PI 385
Cdd:cd14527    1 RLPAYDEVLPGLYLGRWPSADELPPGVPaVLDLTAELPRPRK-RQAYRCVPLLDLVAPTPEQLERAVAWIEELRAQGgPV 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 636783249 386 LVCCALGFQRSACVIVRWLLITRRCEDPAEAVRRIERAGRRVHLPVESLHAVTE 439
Cdd:cd14527   80 LVHCALGYGRSATVVAAWLLAYGRAKSVAEAEALIRAARPQVVLNPAQRKALEA 133
PAP2_Aur1_like cd03386
PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of ...
53-205 8.20e-24

PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.


Pssm-ID: 239481  Cd Length: 186  Bit Score: 97.77  E-value: 8.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249  53 WESAIPFLGWTIIPYWSINLFYALCLFINTV---PRDVDRLARRYLTIQ-IIAVACFIAFPLEATFVRPATSGLPGFM-- 126
Cdd:cd03386   20 LQRHIPLDPLAWFPYGSLHFLVPLALLAWLFlfrPPGTLRRFRRALGLAnLLGLLIYLLFPTAPPRYEPPYGLILLVLlm 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 127 ------FAVLGGFDKPFNQAPSLHIALLVVIWDHLRGRLPRKVRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLGLFAI 200
Cdd:cd03386  100 ygsagyTSGFGGFDNPFNAFPSLHVAWAVLAALFLWRHRRRLLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALALLSF 179

                 ....*
gi 636783249 201 WLFPR 205
Cdd:cd03386  180 YLARR 184
CDC14 COG2453
Protein-tyrosine phosphatase [Signal transduction mechanisms];
321-429 1.02e-11

Protein-tyrosine phosphatase [Signal transduction mechanisms];


Pssm-ID: 441989 [Multi-domain]  Cd Length: 140  Bit Score: 62.30  E-value: 1.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 321 LGRFPRRHEAD----RFATVIDMTGELQRPGGTRA----RWCSFPTLDLAALDKIQTLAAANLIETSRQQG-PILVCCAL 391
Cdd:COG2453   10 GGPLPGGGEADlkreGIDAVVSLTEEEELLLGLLEeaglEYLHLPIPDFGAPDDEQLQEAVDFIDEALREGkKVLVHCRG 89
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 636783249 392 GFQRSACVIVRWLLitRRCEDPAEAVRRIERAGRRVHL 429
Cdd:COG2453   90 GIGRTGTVAAAYLV--LLGLSAEEALARVRAARPGAVE 125
PRK12361 PRK12361
hypothetical protein; Provisional
226-422 1.09e-10

hypothetical protein; Provisional


Pssm-ID: 183473 [Multi-domain]  Cd Length: 547  Bit Score: 63.49  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 226 GFYYLCGAIAFLGLgALCTPLSAAALLLLWPAVALAIIALGYFGAGPQIFQKRVDGRATLASRWLLAPYRLGA-LINIrl 304
Cdd:PRK12361   8 KYYYLAGALLLLYL-AVTGPSILLTFLFAWISLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWVFIPFLLGTrLYNA-- 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 305 WTRR---MPVSVVITDGVHLGR--FPR---RHEADRFATVIDMTGELQRPG----GTRARWCSFPTLDLAALDKIQTLAA 372
Cdd:PRK12361  85 WARKrdsVPAIQKIDENLYLGCrlFPAdleKLKSNKITAILDVTAEFDGLDwsltEEDIDYLNIPILDHSVPTLAQLNQA 164
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 636783249 373 ANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRCEDPAEAVRRIER 422
Cdd:PRK12361 165 INWIHRQVRANkSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQ 215
DSPc smart00195
Dual specificity phosphatase, catalytic domain;
371-420 2.19e-05

Dual specificity phosphatase, catalytic domain;


Pssm-ID: 214551 [Multi-domain]  Cd Length: 138  Bit Score: 44.20  E-value: 2.19e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 636783249   371 AAANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRC--EDPAEAVRRI 420
Cdd:smart00195  66 EAVEFIEDAESKGgKVLVHCQAGVSRSATLIIAYLMKTRNMslNDAYDFVKDR 118
DSPc pfam00782
Dual specificity phosphatase, catalytic domain; Ser/Thr and Tyr protein phosphatases. The ...
372-410 1.36e-04

Dual specificity phosphatase, catalytic domain; Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region.


Pssm-ID: 395632 [Multi-domain]  Cd Length: 127  Bit Score: 41.48  E-value: 1.36e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 636783249  372 AANLIETSRQQG-PILVCCALGFQRSACVIVRWLLITRRC 410
Cdd:pfam00782  58 AVEFIDDARQKGgKVLVHCQAGISRSATLIIAYLMKTRNL 97
PAP2_like cd01610
PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, ...
122-203 2.18e-04

PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.


Pssm-ID: 238813 [Multi-domain]  Cd Length: 122  Bit Score: 40.91  E-value: 2.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249 122 LPGFMFAVLGGFDKPFNQAPSLHI----ALLVVIWDHLRGRLPRK-VRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLG 196
Cdd:cd01610   35 LRCGPDGDPLLLTEGGYSFPSGHAafafALALFLALLLPRRLLRLlLGLLLLLLALLVGLSRVYLGVHYPSDVLAGALLG 114

                 ....*..
gi 636783249 197 LFAIWLF 203
Cdd:cd01610  115 ILVALLV 121
PAP2_3 pfam14378
PAP2 superfamily;
84-202 1.82e-03

PAP2 superfamily;


Pssm-ID: 433919  Cd Length: 190  Bit Score: 39.24  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636783249   84 PRDVDRLARRYLTIQIIAVACFIAFPLEATFVRPATSGLPGFMFAVL---------------GGFDKPFNQAPSLHIA-- 146
Cdd:pfam14378  56 PRRYREFRTTFLVATLLGLLVFTLFPAAPPRLLPPAGFVDTVAAASLvgwlrdgtsraplglGGITNGLAAMPSLHVAwa 135
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 636783249  147 --LLVVIWDHLRGRLprkVRLLWHLWCFLIGVSVLTTWQHHIIDIPTGMLLGLFAIWL 202
Cdd:pfam14378 136 llCALALWRLRRTRI---LRWLAVAYNVLMIVSTVATGNHYLLDVVAGVALALAAIAL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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