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Conserved domains on  [gi|637161674|ref|WP_024424725|]
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MULTISPECIES: YkuS family protein [Bacillus]

Protein Classification

YkuS family protein( domain architecture ID 10011899)

YkuS family protein similar to Bacillus subtilis UPF0180 protein YkuS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK03094 PRK03094
hypothetical protein; Provisional
 1-80 7.83e-41

hypothetical protein; Provisional


:

Pssm-ID: 179536  Cd Length: 80  Bit Score: 128.29  E-value: 7.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 637161674  1 MTRIGVEQSLSDVEELLKQKGYDVVRIQNEQQMDQCDCYVVTGLDSNVLGISDTTTKASVITASGMTADEICQEVEQRVQ 80
Cdd:PRK03094  1 MAKIGVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRLQ 80
 
Name Accession Description Interval E-value
PRK03094 PRK03094
hypothetical protein; Provisional
 1-80 7.83e-41

hypothetical protein; Provisional


Pssm-ID: 179536  Cd Length: 80  Bit Score: 128.29  E-value: 7.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 637161674  1 MTRIGVEQSLSDVEELLKQKGYDVVRIQNEQQMDQCDCYVVTGLDSNVLGISDTTTKASVITASGMTADEICQEVEQRVQ 80
Cdd:PRK03094  1 MAKIGVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRLQ 80
UPF0180 pfam03698
Uncharacterized protein family (UPF0180); The members of this family are small uncharacterized ...
 4-78 2.91e-32

Uncharacterized protein family (UPF0180); The members of this family are small uncharacterized proteins.


Pssm-ID: 427446  Cd Length: 73  Bit Score: 106.43  E-value: 2.91e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 637161674   4 IGVEQSLSDVEELLKQKGYDVVRIQNEqqMDQCDCYVVTGLDSNVLGISDTTTKASVITASGMTADEICQEVEQR 78
Cdd:pfam03698  1 IAVEEGLSNVKEALRERGYEVVDLEEE--LQNCDAIVVTGQDTNVMGIEDTSTKAPVINASGKTAEEIVQEVENR 73
 
Name Accession Description Interval E-value
PRK03094 PRK03094
hypothetical protein; Provisional
 1-80 7.83e-41

hypothetical protein; Provisional


Pssm-ID: 179536  Cd Length: 80  Bit Score: 128.29  E-value: 7.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 637161674  1 MTRIGVEQSLSDVEELLKQKGYDVVRIQNEQQMDQCDCYVVTGLDSNVLGISDTTTKASVITASGMTADEICQEVEQRVQ 80
Cdd:PRK03094  1 MAKIGVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRLQ 80
UPF0180 pfam03698
Uncharacterized protein family (UPF0180); The members of this family are small uncharacterized ...
 4-78 2.91e-32

Uncharacterized protein family (UPF0180); The members of this family are small uncharacterized proteins.


Pssm-ID: 427446  Cd Length: 73  Bit Score: 106.43  E-value: 2.91e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 637161674   4 IGVEQSLSDVEELLKQKGYDVVRIQNEqqMDQCDCYVVTGLDSNVLGISDTTTKASVITASGMTADEICQEVEQR 78
Cdd:pfam03698  1 IAVEEGLSNVKEALRERGYEVVDLEEE--LQNCDAIVVTGQDTNVMGIEDTSTKAPVINASGKTAEEIVQEVENR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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