|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
2-319 |
0e+00 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 516.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNATIEGSIRYKGRELVGLPARE 81
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLL-PPPGITSGEILFDGEDLLKLSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRA 161
Cdd:COG0444 80 LRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 242 SDPRHPYTRALLGSIPPLtGEKPRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL--GSGTHAAACFRVAQA 319
Cdd:COG0444 240 ENPRHPYTRALLSSIPRL-DPDGRRLIPIPGEPPSLLNPPSGCRFHPRCPYAMDRCREEEPPLreVGPGHRVACHLYEEE 318
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-279 |
9.27e-146 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 421.02 E-value: 9.27e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGRELVGLPARE 81
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAAHPSGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRA 161
Cdd:COG4172 86 LRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGGQRQRV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:COG4172 166 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELF 245
|
250 260 270
....*....|....*....|....*....|....*...
gi 639163462 242 SDPRHPYTRALLGSIPpltgekPRRLPAIPGSPPSLLR 279
Cdd:COG4172 246 AAPQHPYTRKLLAAEP------RGDPRPVPPDAPPLLE 277
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
2-319 |
3.90e-130 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 373.68 E-value: 3.90e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNATIEGSIRYKGRELVGLPARE 81
Cdd:PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRA 161
Cdd:PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 242 SDPRHPYTRALLGSIPPLTGEKpRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKP--DLGSGtHAAACFRVAQA 319
Cdd:PRK09473 251 YQPSHPYSIGLLNAVPRLDAEG-ESLLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPleEFGPG-RLRACFKPVEE 328
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
2-235 |
7.62e-117 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 336.01 E-value: 7.62e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRELVGLPaRE 81
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL----LKPTSGSIIFDGKDLLKLS-RR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVnFPNPHEAMSRYPHQLSGGMRQRA 161
Cdd:cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVG-VGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-319 |
1.09e-115 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 337.09 E-value: 1.09e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSF-------RTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNAtieGSIRYKGREL 74
Cdd:COG4608 7 LLEVRDLKKHFpvrgglfGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLE-EPTS---GEILFDGQDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VGLPARELRRLRgNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHeaMSRYPHQLS 154
Cdd:COG4608 83 TGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRPEH--ADRYPHEFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:COG4608 160 GGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 235 GSRAELFSDPRHPYTRALLGSIPPLTGEKPRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL---GSGtHAA 311
Cdd:COG4608 240 APRDELYARPLHPYTQALLSAVPVPDPERRRERIVLEGDVPSPLNPPSGCRFHTRCPYAQDRCATEEPPLrevGPG-HQV 318
|
....*...
gi 639163462 312 ACFRVAQA 319
Cdd:COG4608 319 ACHLAEEG 326
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
2-304 |
3.40e-111 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 325.54 E-value: 3.40e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGRELVGLPARE 81
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRA 161
Cdd:PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 242 SDPRHPYTRALLGSIPPLTGEKPrRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL 304
Cdd:PRK11022 243 RAPRHPYTQALLRALPEFAQDKA-RLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPAL 304
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-259 |
6.01e-109 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 326.48 E-value: 6.01e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTN-DGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNAtieGSIRYKGRELVGLPAR 80
Cdd:COG1123 260 LLEVRNLSKRYPVRgKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLL-RPTS---GSILFDGKDLTKLSRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGnEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGGMRQR 160
Cdd:COG1123 336 SLRELRR-RVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLP--PDLADRYPHELSGGQRQR 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:COG1123 413 VAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
250
....*....|....*....
gi 639163462 241 FSDPRHPYTRALLGSIPPL 259
Cdd:COG1123 493 FANPQHPYTRALLAAVPSL 511
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-280 |
2.33e-101 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 306.83 E-value: 2.33e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRtnDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNATIEGSIRYKGRELVGLPARe 81
Cdd:COG1123 4 LLEVRDLSVRYP--GGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLL-PHGGRISGEVLLDGRDLLELSEA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrLRGNEIAMIFQDPMTALTPVyTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRA 161
Cdd:COG1123 80 ---LRGRRIGMVFQDPMTQLNPV-TVGDQIAEALEN-LGLSRAEARARVLELLEAVGLE---RRLDRYPHQLSGGQRQRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:COG1123 152 AIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEIL 231
|
250 260 270
....*....|....*....|....*....|....*....
gi 639163462 242 SDPRhpytraLLGSIPPLTGEKPRRLPAIPGSPPsLLRL 280
Cdd:COG1123 232 AAPQ------ALAAVPRLGAARGRAAPAAAAAEP-LLEV 263
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-259 |
1.61e-95 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 292.36 E-value: 1.61e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGL-------VRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnatiEGSIRYKGREL 74
Cdd:COG4172 275 LLEARDLKVWFPIKRGLfrrtvghVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPS-----EGEIRFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VGLPARELRRLRgNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRnISKSKA--MERVEELLAEVNFPnpHEAMSRYPHQ 152
Cdd:COG4172 350 DGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHG-PGLSAAerRARVAEALEEVGLD--PAARHRYPHE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:COG4172 426 FSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVV 505
|
250 260
....*....|....*....|....*..
gi 639163462 233 ERGSRAELFSDPRHPYTRALLGSIPPL 259
Cdd:COG4172 506 EQGPTEQVFDAPQHPYTRALLAAAPLL 532
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-275 |
1.48e-94 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 292.53 E-value: 1.48e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGS---IRYKGRELVGL- 77
Cdd:PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDkmlLRRRSRQVIELs 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 78 --PARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSG 155
Cdd:PRK10261 92 eqSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 639163462 236 SRAELFSDPRHPYTRALLGSIPPLTGEK----PRRLPAIPGSPP 275
Cdd:PRK10261 252 SVEQIFHAPQHPYTRALLAAVPQLGAMKgldyPRRFPLISLEHP 295
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1-317 |
2.24e-94 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 283.14 E-value: 2.24e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDG---------LVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKG 71
Cdd:PRK15079 7 VLLEVADLKVHFDIKDGkqwfwqppkTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---AT-DGEVAWLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 72 RELVGLPARELRRLRgNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHR-NISKSKAMERVEELLAEVNF-PNpheAMSRY 149
Cdd:PRK15079 83 KDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHpKLSRQEVKDRVKAMMLKVGLlPN---LINRY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 230 RVVERGSRAELFSDPRHPYTRALLGS--IPPLTGEKPRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL-GS 306
Cdd:PRK15079 239 HAVELGTYDEVYHNPLHPYTKALMSAvpIPDPDLERNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLeGS 318
|
330
....*....|.
gi 639163462 307 GTHAAACFRVA 317
Cdd:PRK15079 319 FRHAVSCLKVD 329
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
2-318 |
9.77e-93 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 278.77 E-value: 9.77e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGL------VRAIDGVSFDLEESEILGVVGESGSGKtvSLLAVM-GLITDPNatiEGSIRYKGREL 74
Cdd:PRK11308 5 LLQAIDLKKHYPVKRGLfkperlVKALDGVSFTLERGKTLAVVGESGCGK--STLARLlTMIETPT---GGELYYQGQDL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VGlPARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHeaMSRYPHQLS 154
Cdd:PRK11308 80 LK-ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH--YDRYPHMFS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 235 GSRAELFSDPRHPYTRALLGSIPPLTGEKPRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL-GSGTHAAAC 313
Cdd:PRK11308 237 GTKEQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCPRAFGRCRQEQPQLrDYDGRLVAC 316
|
....*
gi 639163462 314 FRVAQ 318
Cdd:PRK11308 317 FAVEQ 321
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
2-291 |
3.04e-92 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 277.56 E-value: 3.04e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKtvSLLA--VMGlITDPNATIEGS-IRYKGRELVGLP 78
Cdd:COG4170 3 LLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGK--SLIAkaICG-ITKDNWHVTADrFRWNGIDLLKLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 ARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRniSKSKAMER-------VEELLAEVNFPNPHEAMSRYPH 151
Cdd:COG4170 80 PRERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWT--FKGKWWQRfkwrkkrAIELLHRVGIKDHKDIMNSYPH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:COG4170 158 ELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQT 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 232 VERGSRAELFSDPRHPYTRALLGSIPPLTGEKPR--RLPAIPGSPPSLLRLPQGCAFGPRCP 291
Cdd:COG4170 238 VESGPTEQILKSPHHPYTKALLRSMPDFRQPLPHksRLNTLPGSIPPLQHLPIGCRLGPRCP 299
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-262 |
2.30e-91 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 272.06 E-value: 2.30e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPnatiEGSIRYKGRELVGLPAREL 82
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPW----SGEVTFDGRPVTRRRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRnisKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGGMRQRAV 162
Cdd:COG1124 78 RR----RVQMVFQDPYASLHPRHTVDRILAEPLRIHG---LPDREERIAELLEQVGLP--PSFLDRYPHQLSGGQRQRVA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFS 242
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
250 260
....*....|....*....|
gi 639163462 243 DPRHPYTRALLGSIPPLTGE 262
Cdd:COG1124 229 GPKHPYTRELLAASLAFERA 248
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
21-254 |
1.40e-85 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 256.91 E-value: 1.40e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNATI-EGSIRYKGRELVGLparelrRLRGNEIAMIFQDPMT 99
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQtSGEILLDGRPLLPL------SIRGRHIATIMQNPRT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPVYTIGWQIAEQIRAHRNISKsKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:TIGR02770 74 AFNPLFTMGNHAIETLRSLGKLSK-QARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 180 TTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALLG 254
Cdd:TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-289 |
9.89e-85 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 264.64 E-value: 9.89e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLI-TDPNATIEGSIRYKGRELVGLPAR 80
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLpSPPVVYPSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQR 160
Cdd:PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 639163462 241 FSDPRHPYTRALLGSIPplTGEKprrLPAIPGSPPsLLRLPQ-GCAFGPR 289
Cdd:PRK15134 245 FSAPTHPYTQKLLNSEP--SGDP---VPLPEPASP-LLDVEQlQVAFPIR 288
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
2-313 |
6.37e-77 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 238.55 E-value: 6.37e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGRELVGLPARE 81
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHrnISKSKAMERVE-------ELLAEVNFPNPHEAMSRYPHQLS 154
Cdd:PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGW--TYKGRWWQRFGwrkrraiELLHRVGIKDHKDAMRSFPYELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 235 GSRAELFSDPRHPYTRALLGSIPPLTGEKPR--RLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDLGSGTHAAA 312
Cdd:PRK15093 241 APSKELVTTPHHPYTQALIRAIPDFGSAMPHksRLNTLPGAIPLLEHLPIGCRLGPRCPYAQRECIETPRLTGAKNHLYA 320
|
.
gi 639163462 313 C 313
Cdd:PRK15093 321 C 321
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
2-256 |
4.27e-72 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 223.54 E-value: 4.27e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRE-----LVG 76
Cdd:COG4107 8 LLSVRGLSKRYGPGCGTVVACRDVSFDLYPGEVLGIVGESGSGKS-TLLKCLYFDLAPTS---GSVYYRDRDggprdLFA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 77 LPARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNphEAMSRYPHQLSGG 156
Cdd:COG4107 84 LSEAERRRLRRTDWGMVYQNPRDGLRMDVSAGGNIAERLMAAGERHYGDIRARALEWLERVEIPL--ERIDDLPRTFSGG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:COG4107 162 MQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLADRTMVMKNGRVVESGL 241
|
250 260
....*....|....*....|
gi 639163462 237 RAELFSDPRHPYTRALLGSI 256
Cdd:COG4107 242 TDQVLEDPQHPYTQLLVSSV 261
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-280 |
4.34e-67 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 213.40 E-value: 4.34e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MIlSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPAR 80
Cdd:COG1135 1 MI-ELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKS-TLIRCINLLERPT---SGSVLVDGVDLTALSER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGNeIAMIFQDP--MTALTpVYtigwqiaeqirahRNI---------SKSKAMERVEELLAEVNFPNPHEAmsrY 149
Cdd:COG1135 76 ELRAARRK-IGMIFQHFnlLSSRT-VA-------------ENValpleiagvPKAEIRKRVAELLELVGLSDKADA---Y 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:COG1135 138 PSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENG 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 639163462 230 RVVERGSRAELFSDPRHPYTRALLGSI--PPLTGEKPRRLPAIPGSPPsLLRL 280
Cdd:COG1135 218 RIVEQGPVLDVFANPQSELTRRFLPTVlnDELPEELLARLREAAGGGR-LVRL 269
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
2-255 |
1.07e-62 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 199.68 E-value: 1.07e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVR-----AIDGVSFDLEESEILGVVGESGSGKtvSLLAVM--GLITdPNAtieGSIRYKGREL 74
Cdd:COG4167 4 LLEVRNLSKTFKYRTGLFRrqqfeAVKPVSFTLEAGQTLAIIGENGSGK--STLAKMlaGIIE-PTS---GEILINGHKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 vglpARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHeaMSRYPHQLS 154
Cdd:COG4167 78 ----EYGDYKYRCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLLPEH--ANFYPHMLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:COG4167 152 SGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEY 231
|
250 260
....*....|....*....|.
gi 639163462 235 GSRAELFSDPRHPYTRALLGS 255
Cdd:COG4167 232 GKTAEVFANPQHEVTKRLIES 252
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-270 |
1.42e-60 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 203.93 E-value: 1.42e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGL-------VRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGREL 74
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLlnrvtreVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE----SQGGEIIFNGQRI 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VGLPARELRRLRGNeIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAmsRYPHQLS 154
Cdd:PRK10261 389 DTLSPGKLQALRRD-IQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW--RYPHEFS 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545
|
250 260 270
....*....|....*....|....*....|....*.
gi 639163462 235 GSRAELFSDPRHPYTRALLGSIPPLTGEKPRRLPAI 270
Cdd:PRK10261 546 GPRRAVFENPQHPYTRKLMAAVPVADPSRQRPQRVL 581
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-245 |
2.72e-60 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 192.41 E-value: 2.72e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MIlSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPAR 80
Cdd:cd03258 1 MI-ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS-TLIRCINGLERPT---SGSVLVDGTDLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRgNEIAMIFQ--DPMTALTpVYTigwQIAEQIRAHRnISKSKAMERVEELLAEVNFPNPHEAmsrYPHQLSGGMR 158
Cdd:cd03258 76 ELRKAR-RRIGMIFQhfNLLSSRT-VFE---NVALPLEIAG-VPKAEIEERVLELLELVGLEDKADA---YPAQLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVE 226
|
....*..
gi 639163462 239 ELFSDPR 245
Cdd:cd03258 227 EVFANPQ 233
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
2-233 |
1.22e-58 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 187.94 E-value: 1.22e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARE 81
Cdd:COG1136 4 LLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKS-TLLNILGGLDRPT---SGEVLIDGQDISSLSERE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPmtALTPVYTIgwqiAEQIR---AHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMR 158
Cdd:COG1136 80 LARLRRRHIGFVFQFF--NLLPELTA----LENVAlplLLAGVSRKERRERARELLERVGLG---DRLDHRPSQLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMgVVSELADRVMVMYAGRVVE 233
Cdd:COG1136 151 QRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVS 224
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
2-253 |
3.68e-58 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 187.11 E-value: 3.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARE 81
Cdd:COG1127 5 MIEVRNLTKSFGDR----VVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLR-PDS---GEILVDGQDITGLSEKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgNEIAMIFQ-----DPMTaltpvytigwqIAEQI----RAHRNISKSKAMERVEELLAEVNFPNpheAMSRYPHQ 152
Cdd:COG1127 77 LYELR-RRIGMLFQggalfDSLT-----------VFENVafplREHTDLSEAEIRELVLEKLELVGLPG---AADKMPSE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALD-VTVQAgILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:COG1127 142 LSGGMRKRVALARALALDPEILLYDEPTAGLDpITSAV-IDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKI 220
|
250 260
....*....|....*....|...
gi 639163462 232 VERGSRAELF-SDprHPYTRALL 253
Cdd:COG1127 221 IAEGTPEELLaSD--DPWVRQFL 241
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
22-253 |
3.91e-58 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 187.60 E-value: 3.91e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGRELVglPARelrrLRGNEIAMIFQDPMTAL 101
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA--PCA----LRGRKIATIMQNPRSAF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRAhrnISKSKAMERVEELLAEVNFPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:PRK10418 93 NPLHTMHTHARETCLA---LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALL 253
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLV 241
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-253 |
9.65e-58 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 194.15 E-value: 9.65e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDGLVR-------AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnatiEGSIRYKGRE 73
Cdd:PRK15134 274 PLLDVEQLQVAFPIRKGILKrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFDGQP 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 74 LVGLPARELRRLRgNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHR-NISKSKAMERVEELLAEVNFpNPhEAMSRYPHQ 152
Cdd:PRK15134 349 LHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSAAQREQQVIAVMEEVGL-DP-ETRHRYPAE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505
|
250 260
....*....|....*....|.
gi 639163462 233 ERGSRAELFSDPRHPYTRALL 253
Cdd:PRK15134 506 EQGDCERVFAAPQQEYTRQLL 526
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
2-256 |
1.74e-55 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 180.89 E-value: 1.74e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGR-----ELVG 76
Cdd:PRK11701 6 LLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKT-TLLNALSARLAPDA---GEVHYRMRdgqlrDLYA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 77 LPARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQI-----RAHRNISKSKA--MERVEELLAEVNFPnpheamsry 149
Cdd:PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLmavgaRHYGDIRATAGdwLERVEIDAARIDDL--------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228
|
250 260
....*....|....*....|....*..
gi 639163462 230 RVVERGSRAELFSDPRHPYTRALLGSI 256
Cdd:PRK11701 229 RVVESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
3-231 |
2.03e-55 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 179.22 E-value: 2.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPAREL 82
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS-TLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNEIAMIFQDP-----MTALTPVytigwQIAEQIRAHRnisKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGM 157
Cdd:cd03255 77 AAFRRRHIGFVFQSFnllpdLTALENV-----ELPLLLAGVP---KKERRERAEELLERVGLG---DRLNHYPSELSGGQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVsELADRVMVMYAGRV 231
Cdd:cd03255 146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-280 |
4.63e-54 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 180.00 E-value: 4.63e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MIlSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPAR 80
Cdd:PRK11153 1 MI-ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS-TLIRCINLLERPT---SGRVLVDGQDLTALSEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRgNEIAMIFQD---------------PMtaltpvytigwQIAeqirahrNISKSKAMERVEELLAEVNFPNPHEa 145
Cdd:PRK11153 76 ELRKAR-RQIGMIFQHfnllssrtvfdnvalPL-----------ELA-------GTPKAEIKARVTELLELVGLSDKAD- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 146 msRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMV 225
Cdd:PRK11153 136 --RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 226 MYAGRVVERGSRAELFSDPRHPYTRALLGS-----IPPLTGEKPRRLPAiPGSPPsLLRL 280
Cdd:PRK11153 214 IDAGRLVEQGTVSEVFSHPKHPLTREFIQStlhldLPEDYLARLQAEPT-TGSGP-LLRL 271
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
3-250 |
3.42e-53 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 174.23 E-value: 3.42e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPAREL 82
Cdd:cd03261 1 IELRGLTKSFGGR----TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDS---GEVLIDGEDISGLSEAEL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRgNEIAMIFQDPmtALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAV 162
Cdd:cd03261 73 YRLR-RRMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR---GAEDLYPAELSGGMKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFS 242
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
....*...
gi 639163462 243 DPrHPYTR 250
Cdd:cd03261 227 SD-DPLVR 233
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
3-245 |
5.75e-52 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 170.98 E-value: 5.75e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDlkVSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELVGLPAREL 82
Cdd:COG1122 1 IELEN--LSFSYPGG-TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLK-PT---SGEVLVDGKDITKKNLREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPMTALtpVYTIGWQ-IA---EQIRahrnISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMR 158
Cdd:COG1122 74 RR----KVGLVFQNPDDQL--FAPTVEEdVAfgpENLG----LPREEIRERVEEALELVGL---EHLADRPPHELSGGQK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:COG1122 141 QRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKT-VIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
....*..
gi 639163462 239 ELFSDPR 245
Cdd:COG1122 220 EVFSDYE 226
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
2-256 |
1.10e-51 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 170.56 E-value: 1.10e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGrELVGLPARE 81
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKS-TLLRCINLLEEPD---SGTITVDG-EDLTDSKKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGnEIAMIFQD----P-MTALTPVyTIGwqiaeQIRaHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGG 156
Cdd:COG1126 72 INKLRR-KVGMVFQQfnlfPhLTVLENV-TLA-----PIK-VKKMSKAEAEERAMELLERVGLA---DKADAYPAQLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:COG1126 141 QQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVV-VTHEMGFAREVADRVVFMDGGRIVEEGP 219
|
250 260
....*....|....*....|
gi 639163462 237 RAELFSDPRHPYTRALLGSI 256
Cdd:COG1126 220 PEEFFENPQHERTRAFLSKV 239
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-256 |
8.01e-50 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 166.42 E-value: 8.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdpnATiEGSIRYKGRELVGLPA 79
Cdd:COG1116 6 PALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKS-TLLrLIAGLEK---PT-SGEVLVDGKPVTGPGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RelrrlrgneIAMIFQDPmtALTPvytigWQ-IAEQIR---AHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSG 155
Cdd:COG1116 81 D---------RGVVFQEP--ALLP-----WLtVLDNVAlglELRGVPKAERRERARELLELVGL---AGFEDAYPHQLSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDmgvVSE---LADRVMVMYA--GR 230
Cdd:COG1116 142 GMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHD---VDEavfLADRVVVLSArpGR 218
|
250 260 270
....*....|....*....|....*....|....
gi 639163462 231 VVE-------RGSRAELFSDPR-HPYTRALLGSI 256
Cdd:COG1116 219 IVEeidvdlpRPRDRELRTSPEfAALRAEILDLL 252
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
3-234 |
5.39e-49 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 163.03 E-value: 5.39e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKGRELVGlparel 82
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PT-SGEVLVDGEPVTG------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 rrlRGNEIAMIFQDPmtALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAV 162
Cdd:cd03293 71 ---PGPDRGYVFQQD--ALLPWLTVLDNVALGLEL-QGVPKAEARERAEELLELVGLS---GFENAYPHQLSGGMRQRVA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDV----TVQAGILDLVRKLRAThksaVVFITHDmgvVSE---LADRVMVMYA--GRVVE 233
Cdd:cd03293 142 LARALAVDPDVLLLDEPFSALDAltreQLQEELLDIWRETGKT----VLLVTHD---IDEavfLADRVVVLSArpGRIVA 214
|
.
gi 639163462 234 R 234
Cdd:cd03293 215 E 215
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
3-240 |
7.36e-49 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 162.93 E-value: 7.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTndglVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKGRELVGLPAREL 82
Cdd:COG1131 1 IEVRGLTKRYGD----KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLR---PT-SGEVRVLGEDVARDPAEVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgneIAMIFQDPmtALTPVYTiGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAV 162
Cdd:COG1131 73 RR-----IGYVPQEP--ALYPDLT-VRENLRFFARLYGLPRKEARERIDELLELFGLT---DAADRKVGTLSGGMKQRLG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:COG1131 142 LALALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGKT-VLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
2-269 |
2.69e-48 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 162.55 E-value: 2.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdGLVRA------IDGVSFDLEESEILGVVGESGSGKtvSLLA--VMGLitdpNATIEGSIRYKGRE 73
Cdd:PRK10419 3 LLNVSGLSHHYAHG-GLSGKhqhqtvLNNVSLSLKSGETVALLGRSGCGK--STLArlLVGL----ESPSQGNVSWRGEP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 74 LVGLPARELRRLRGnEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHeaMSRYPHQL 153
Cdd:PRK10419 76 LAKLNRAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSV--LDKRPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
250 260 270
....*....|....*....|....*....|....*.
gi 639163462 234 RGSRAELFSdPRHPYTRALLGSIPPltgEKPRRLPA 269
Cdd:PRK10419 233 TQPVGDKLT-FSSPAGRVLQNAVLP---AFPVRRRT 264
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
10-230 |
4.45e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 160.33 E-value: 4.45e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd03225 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL----GPTSGEVLVDGKDLTKLSLKELRR----K 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDP---MTALTpvytigwqIAEQI---RAHRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAVI 163
Cdd:cd03225 77 VGLVFQNPddqFFGPT--------VEEEVafgLENLGLPEEEIEERVEEALELVGLEGLRD---RSPFTLSGGQKQRVAI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 164 AMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKT-IIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
2-256 |
3.69e-47 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 159.23 E-value: 3.69e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGR-----ELVG 76
Cdd:TIGR02323 3 LLQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDH---GTATYIMRsgaelELYQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 77 LPARELRRLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGG 156
Cdd:TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID--PTRIDDLPRAFSGG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232
|
250 260
....*....|....*....|
gi 639163462 237 RAELFSDPRHPYTRALLGSI 256
Cdd:TIGR02323 233 TDQVLDDPQHPYTQLLVSSI 252
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-245 |
1.16e-44 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 152.21 E-value: 1.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPAREL 82
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTS---GSVLFDGEDITGLPPHEI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRgneIAMIFQDP-----MTALTPVytigwQIAEQIRAHRNI-------SKSKAMERVEELLAEVNFpnpHEAMSRYP 150
Cdd:cd03219 73 ARLG---IGRTFQIPrlfpeLTVLENV-----MVAAQARTGSGLllararrEEREARERAEELLERVGL---ADLADRPA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 HQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGIT-VLLVEHDMDVVMSLADRVTVLDQGR 220
|
250
....*....|....*
gi 639163462 231 VVERGSRAELFSDPR 245
Cdd:cd03219 221 VIAEGTPDEVRNNPR 235
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-254 |
1.58e-44 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 154.92 E-value: 1.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTndglVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGREL-VGLPA 79
Cdd:COG1118 1 MSIEVRNISKRFGS----FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLET-PD---SGRIVLNGRDLfTNLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RElRRlrgneIAMIFQDPmtALTPVYTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQ 159
Cdd:COG1118 73 RE-RR-----VGFVFQHY--ALFPHMTVAENIAFGLR-VRPPSKAEIRARVEELLELVQLEGLAD---RYPSQLSGGQRQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAgilDLVRKLRATHKS---AVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:COG1118 141 RVALARALAVEPEVLLLDEPFGALDAKVRK---ELRRWLRRLHDElggTTVFVTHDQEEALELADRVVVMNQGRIEQVGT 217
|
250
....*....|....*...
gi 639163462 237 RAELFSDPRHPYTRALLG 254
Cdd:COG1118 218 PDEVYDRPATPFVARFLG 235
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
3-235 |
2.02e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 150.75 E-value: 2.02e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPnatiEGSIRYKGRELVGLPARel 82
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD----SGEILIDGRDVTGVPPE-- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPmtALTPVYTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPNPheaMSRYPHQLSGGMRQRAV 162
Cdd:cd03259 71 RR----NIGMVFQDY--ALFPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEGL---LNRYPHELSGGQQQRVA 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
2-233 |
5.85e-44 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 149.81 E-value: 5.85e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKS-TLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQdpMTALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPNpheAMSRYPHQLSGGMRQRA 161
Cdd:TIGR02211 77 RAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLI-GKKSVKEAKERAYEMLEKVGLEH---RINHRPSELSGGERQRV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELaDRVMVMYAGRVVE 233
Cdd:TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-245 |
5.97e-44 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 150.96 E-value: 5.97e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdPNAtieGSIRYKGRELVGLPA 79
Cdd:COG0411 3 PLLEVRGLTKRF----GGLVAVDDVSLEVERGEIVGLIGPNGAGKT-TLFnLITGFYR-PTS---GRILFDGRDITGLPP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRlRGneIAMIFQDP-----MTALTPVytigwQIAEQIRAHRNISKS------------KAMERVEELLAEVNFpnp 142
Cdd:COG0411 74 HRIAR-LG--IARTFQNPrlfpeLTVLENV-----LVAAHARLGRGLLAAllrlprarreerEARERAEELLERVGL--- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 143 HEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADR 222
Cdd:COG0411 143 ADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADR 222
|
250 260
....*....|....*....|...
gi 639163462 223 VMVMYAGRVVERGSRAELFSDPR 245
Cdd:COG0411 223 IVVLDFGRVIAEGTPAEVRADPR 245
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
3-240 |
9.46e-44 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 149.64 E-value: 9.46e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLI-TDPNATIEGSIRYKGRELVGLPAR- 80
Cdd:cd03260 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdLIPGAPDEGEVLLDGKDIYDLDVDv 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 -ELRRlrgnEIAMIFQDPMTALTPVYTigwQIAEQIRAHRNISKSKAMERVEELLAEVNFPNphEAMSR-YPHQLSGGMR 158
Cdd:cd03260 77 lELRR----RVGMVFQKPNPFPGSIYD---NVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRlHALGLSGGQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
|
..
gi 639163462 239 EL 240
Cdd:cd03260 226 QI 227
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-255 |
2.47e-43 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 149.94 E-value: 2.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDGLVR-----AIDGVSFDLEESEILGVVGESGSGKtvSLLAVMglitdpnatIEGSIRYKGRELV 75
Cdd:PRK15112 3 TLLEVRNLSKTFRYRTGWFRrqtveAVKPLSFTLREGQTLAIIGENGSGK--STLAKM---------LAGMIEPTSGELL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 76 gLPARELR----RLRGNEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHeaMSRYPH 151
Cdd:PRK15112 72 -IDDHPLHfgdySYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH--ASYYPH 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:PRK15112 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV 228
|
250 260
....*....|....*....|....
gi 639163462 232 VERGSRAELFSDPRHPYTRALLGS 255
Cdd:PRK15112 229 VERGSTADVLASPLHELTKRLIAG 252
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
2-254 |
4.57e-43 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 151.40 E-value: 4.57e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARE 81
Cdd:COG3842 5 ALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFET-PDS---GRILLDGRDVTGLPPEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlRGneIAMIFQDPmtALTPVYTIgwqiAEQIR---AHRNISKSKAMERVEELLAEVNfpnpheaMS----RYPHQLS 154
Cdd:COG3842 77 ----RN--VGMVFQDY--ALFPHLTV----AENVAfglRMRGVPKAEIRARVAELLELVG-------LEgladRYPHQLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALD----VTVQAGILDLVRKLRAThksaVVFITHDMgvvSE---LADRVMVMY 227
Cdd:COG3842 138 GGQQQRVALARALAPEPRVLLLDEPLSALDaklrEEMREELRRLQRELGIT----FIYVTHDQ---EEalaLADRIAVMN 210
|
250 260
....*....|....*....|....*..
gi 639163462 228 AGRVVERGSRAELFSDPRHPYTRALLG 254
Cdd:COG3842 211 DGRIEQVGTPEEIYERPATRFVADFIG 237
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-233 |
5.90e-43 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 147.58 E-value: 5.90e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLITdpnATiEGSIRYKGRELVGLPAR 80
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKS-TLLGLLaGLDR---PT-SGTVRLAGQDLFALDED 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGNEIAMIFQD----P-MTAL----TPvytigwqiAEqIRAHRNiskskAMERVEELLAEVNFpnpHEAMSRYPH 151
Cdd:COG4181 83 ARARLRARHVGFVFQSfqllPtLTALenvmLP--------LE-LAGRRD-----ARARARALLERVGL---GHRLDHYPA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMgvvsELA---DRVMVMYA 228
Cdd:COG4181 146 QLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDP----ALAarcDRVLRLRA 221
|
....*
gi 639163462 229 GRVVE 233
Cdd:COG4181 222 GRLVE 226
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-240 |
1.56e-42 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 146.93 E-value: 1.56e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MIlSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPaR 80
Cdd:COG4555 1 MI-EVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLL-KPD---SGSILIDGEDVRKEP-R 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrgnEIAMIFQDPMtaLTPVYTIGWQIAEQIRAHRnISKSKAMERVEELLAEVNFPNPheaMSRYPHQLSGGMRQR 160
Cdd:COG4555 71 EARR----QIGVLPDERG--LYDRLTVRENIRYFAELYG-LFDEELKKRIEELIELLGLEEF---LDRRVGELSTGMKKK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:COG4555 141 VALARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKK-EGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
10-255 |
2.33e-42 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 146.29 E-value: 2.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd03295 6 VTKRYGGGKK-AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PT---SGEIFIDGEDIREQDPVELRR----K 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDpmTALTPVYTIgwqiaeqiraHRNI---------SKSKAMERVEELLAEVNFPnPHEAMSRYPHQLSGGMRQR 160
Cdd:cd03295 77 IGYVIQQ--IGLFPHMTV----------EENIalvpkllkwPKEKIRERADELLALVGLD-PAEFADRYPHELSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
250
....*....|....*
gi 639163462 241 FSDPRHPYTRALLGS 255
Cdd:cd03295 224 LRSPANDFVAEFVGA 238
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-260 |
1.06e-41 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 145.48 E-value: 1.06e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNAtieGSIRYKGRELVGLPARELRRLRGNEIAMIFQD 96
Cdd:cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTS---GKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 ----P-MTALTPVyTIGWQIAEQIRAHRniskskaMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNP 171
Cdd:cd03294 111 fallPhRTVLENV-AFGLEVQGVPRAER-------EERAAEALELVGL---EGWEHKYPDELSGGMQQRVGLARALAVDP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 172 ALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRA 251
Cdd:cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVRE 259
|
....*....
gi 639163462 252 LLGSIPPLT 260
Cdd:cd03294 260 FFRGVDRAK 268
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
3-231 |
5.22e-41 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 141.88 E-value: 5.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLkvSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPAREL 82
Cdd:COG4619 1 LELEGL--SFRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLD-PPT---SGEIYLDGKPLSAMPPPEW 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPmtaltpvytiGWqIAEQIRAH-----RNISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGGM 157
Cdd:COG4619 73 RR----QVAYVPQEP----------AL-WGGTVRDNlpfpfQLRERKFDRERALELLERLGLP--PDILDKPVERLSGGE 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:COG4619 136 RQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
2-242 |
7.82e-41 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 142.88 E-value: 7.82e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdPNAtieGSIRYKGRELVGLPAR 80
Cdd:COG1120 1 MLEAENLSVGYGGR----PVLDDVSLSLPPGEVTALLGPNGSGKS-TLLrALAGLLK-PSS---GEVLLDGRDLASLSRR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLrgneIAMIFQDPMTA--LTpvytigwqiAEQI-----RAHRNI---SKSKAMERVEELLAEVNFpnphEAMS-RY 149
Cdd:COG1120 72 ELARR----IAYVPQEPPAPfgLT---------VRELvalgrYPHLGLfgrPSAEDREAVEEALERTGL----EHLAdRP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:COG1120 135 VDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDG 214
|
250
....*....|...
gi 639163462 230 RVVERGSRAELFS 242
Cdd:COG1120 215 RIVAQGPPEEVLT 227
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
9-244 |
2.06e-40 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 142.21 E-value: 2.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 9 KVSFRTNDGL---VRAIDGVSFDLEESEILGVVGESGSGKT--VSLLAvmGLITdPNAtieGSIRYKGRELVGLPARELR 83
Cdd:TIGR04521 5 NVSYIYQPGTpfeKKALDDVSLTIEDGEFVAIIGHTGSGKStlIQHLN--GLLK-PTS---GTVTIDGRDITAKKKKKLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLRgNEIAMIFQDPMTALtpvytigwqIAEQIRAH-----RN--ISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGG 156
Cdd:TIGR04521 79 DLR-KKVGLVFQFPEHQL---------FEETVYKDiafgpKNlgLSEEEAEERVKEALELVGLD--EEYLERSPFELSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:TIGR04521 147 QMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGT 226
|
....*...
gi 639163462 237 RAELFSDP 244
Cdd:TIGR04521 227 PREVFSDV 234
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-244 |
1.22e-38 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 136.76 E-value: 1.22e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdpnaTIEGSIRYKGRelvglPA 79
Cdd:COG1121 5 PAIELENLTVSYGGR----PVLEDVSLTIPPGEFVAIVGPNGAGKS-TLLkAILGLLP----PTSGTVRLFGK-----PP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRG-----NEIAMIFqdPMTALTPVYTiGWQiaEQIRAHRNISKsKAMERVEELLAEVNfpnpheaMSRYPH--- 151
Cdd:COG1121 71 RRARRRIGyvpqrAEVDWDF--PITVRDVVLM-GRY--GRRGLFRRPSR-ADREAVDEALERVG-------LEDLADrpi 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 -QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMyAGR 230
Cdd:COG1121 138 gELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGK-TILVVTHDLGAVREYFDRVLLL-NRG 215
|
250
....*....|....
gi 639163462 231 VVERGSRAELFSDP 244
Cdd:COG1121 216 LVAHGPPEEVLTPE 229
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
16-267 |
2.33e-38 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 137.91 E-value: 2.33e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 16 DGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPARELRRlrgnEIAMIFQ 95
Cdd:COG1125 12 PDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLI-EPT---SGRILIDGEDIRDLDPVELRR----RIGYVIQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 96 DpmTALTPVYTIGwqiaeqirahRNI---------SKSKAMERVEELLAEVNFPnPHEAMSRYPHQLSGGMRQRAVIAMA 166
Cdd:COG1125 84 Q--IGLFPHMTVA----------ENIatvprllgwDKERIRARVDELLELVGLD-PEEYRDRYPHELSGGQQQRVGVARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 167 LSCNPALLVADEPTTALD-VT---VQAGILDLVRKLRAThksaVVFITHDMgvvSE---LADRVMVMYAGRVVERGSRAE 239
Cdd:COG1125 151 LAADPPILLMDEPFGALDpITreqLQDELLRLQRELGKT----IVFVTHDI---DEalkLGDRIAVMREGRIVQYDTPEE 223
|
250 260
....*....|....*....|....*...
gi 639163462 240 LFSDPRHPYTRALLGSippltGEKPRRL 267
Cdd:COG1125 224 ILANPANDFVADFVGA-----DRGLRRL 246
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
10-239 |
2.63e-38 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 135.18 E-value: 2.63e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRLRGNe 89
Cdd:COG2884 7 VSKRYPGG-REALSDVSLEIEKGEFVFLTGPSGAGKS-TLLKLLYGEERPT---SGQVLVNGQDLSRLKRREIPYLRRR- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQD---------------PMTAltpvytIGWqiaeqirahrniSKSKAMERVEELLAEVNFPNpheAMSRYPHQLS 154
Cdd:COG2884 81 IGVVFQDfrllpdrtvyenvalPLRV------TGK------------SRKEIRRRVREVLDLVGLSD---KAKALPHELS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:COG2884 140 GGEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGT-TVLIATHDLELVDRMPKRVLELEDGRLVRD 218
|
....*
gi 639163462 235 GSRAE 239
Cdd:COG2884 219 EARGV 223
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
3-231 |
9.99e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 132.14 E-value: 9.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKGRElvglPAREL 82
Cdd:cd03230 1 IEVRNLSKRYGKK----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PD-SGEIKVLGKD----IKKEP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNeIAMIFQDPM--TALTpvytigwqiaeqirahrniskskamerVEELLaevnfpnpheamsryphQLSGGMRQR 160
Cdd:cd03230 69 EEVKRR-IGYLPEEPSlyENLT---------------------------VRENL-----------------KLSGGMKQR 103
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT-ILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
3-231 |
1.17e-37 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 133.42 E-value: 1.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLvraiDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRElVGLPAREL 82
Cdd:cd03262 1 IEIKNLHKSFGDFHVL----KGIDLTVKKGEVVVIIGPSGSGKS-TLLRCINLLEEPDS---GTIIIDGLK-LTDDKKNI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRgNEIAMIFQD----P-MTALTpvytigwQIAEQIRAHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGM 157
Cdd:cd03262 72 NELR-QKVGMVFQQfnlfPhLTVLE-------NITLAPIKVKGMSKAEAEERALELLEKVGLA---DKADAYPAQLSGGQ 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMYAGRV 231
Cdd:cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVV-VTHEMGFAREVADRVIFMDDGRI 213
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
17-259 |
5.20e-37 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 132.23 E-value: 5.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLiTDPNAtieGSIRYKGRELVGLPARElrrlrgNEIAMIFQD 96
Cdd:TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-EQPDS---GRIRLNGQDATRVHARD------RKIGFVFQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 pmTALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPALLVA 176
Cdd:TIGR00968 81 --YALFKHLTVRDNIAFGLEI-RKHPKAKIKARVEELLELVQLEG---LGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 177 DEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALLGSI 256
Cdd:TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEV 234
|
...
gi 639163462 257 PPL 259
Cdd:TIGR00968 235 NVL 237
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-251 |
5.95e-37 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 132.85 E-value: 5.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITD--PNATIEGSIRYKGREL--VGL 77
Cdd:COG1117 11 KIEVRNLNVYYGDK----QALKDINLDIPENKVTALIGPSGCGKS-TLLRCLNRMNDliPGARVEGEILLDGEDIydPDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 78 PARELRRlrgnEIAMIFQDP----MTaltpvytigwqIAEQI----RAHRNISKSKAMERVEELLAEVNFPNphE----- 144
Cdd:COG1117 86 DVVELRR----RVGMVFQKPnpfpKS-----------IYDNVayglRLHGIKSKSELDEIVEESLRKAALWD--Evkdrl 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 145 ---AMSryphqLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELAD 221
Cdd:COG1117 149 kksALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDY--TIVIVTHNMQQAARVSD 221
|
250 260 270
....*....|....*....|....*....|
gi 639163462 222 RVMVMYAGRVVERGSRAELFSDPRHPYTRA 251
Cdd:COG1117 222 YTAFFYLGELVEFGPTEQIFTNPKDKRTED 251
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-253 |
7.05e-37 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 132.57 E-value: 7.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 5 VRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNA-TIE-GSIRYKGRELVGLPAREL 82
Cdd:PRK11264 6 VKNLVKKFHGQ----TVLHGIDLEVKPGEVVAIIGPSGSGKT-TLLRCINLLEQPEAgTIRvGDITIDTARSLSQQKGLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRgNEIAMIFQDpmTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAmsrYPHQLSGGMRQRAV 162
Cdd:PRK11264 81 RQLR-QHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS---YPRRLSGGQQQRVA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFS 242
Cdd:PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
250
....*....|.
gi 639163462 243 DPRHPYTRALL 253
Cdd:PRK11264 234 DPQQPRTRQFL 244
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-255 |
1.00e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 131.69 E-value: 1.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLiTDPNAtieGSIRYKGRELVGLPAR 80
Cdd:cd03296 1 MSIEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-ERPDS---GTILFGGEDATDVPVQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ElrrlrgNEIAMIFQDpmTALTPVYTIGWQIAEQIR---AHRNISKSKAMERVEELLAEVNFPNpheAMSRYPHQLSGGM 157
Cdd:cd03296 73 E------RNVGFVFQH--YALFRHMTVFDNVAFGLRvkpRSERPPEAEIRAKVHELLKLVQLDW---LADRYPAQLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAgilDLVRKLRATHKS---AVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRK---ELRRWLRRLHDElhvTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
|
250 260
....*....|....*....|.
gi 639163462 235 GSRAELFSDPRHPYTRALLGS 255
Cdd:cd03296 219 GTPDEVYDHPASPFVYSFLGE 239
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
3-230 |
2.17e-36 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 128.84 E-value: 2.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLpaREL 82
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE----PDSGSILIDGEDLTDL--EDE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNEIAMIFQDPmtALTPVYTIGWQIAeqirahrniskskamerveellaevnfpnpheamsrYPhqLSGGMRQRAV 162
Cdd:cd03229 71 LPPLRRRIGMVFQDF--ALFPHLTVLENIA------------------------------------LG--LSGGQQQRVA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
22-244 |
3.36e-36 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 130.15 E-value: 3.36e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPnatIEGSIRYKGRELVGLPArELRRlrgneIAMIFQDpmTAL 101
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-P---DSGKILLNGKDITNLPP-EKRD-----ISYVPQN--YAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRaHRNISKSKAMERVEELlAEvnFPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:cd03299 83 FPHMTVYKNIAYGLK-KRKVDKKEIERKVLEI-AE--MLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-235 |
4.69e-36 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 127.94 E-value: 4.69e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 4 SVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPARELR 83
Cdd:cd03214 1 EVENLSVGYGGR----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLrgneIAMIFQdpmtaltpvytigwqiaeqirahrniskskAMERVE-ELLAEvnfpnpheamsRYPHQLSGGMRQRAV 162
Cdd:cd03214 73 RK----IAYVPQ------------------------------ALELLGlAHLAD-----------RPFNELSGGERQRVL 107
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03214 108 LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
20-244 |
9.00e-36 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 128.89 E-value: 9.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARElrrlRGneIAMIFQDpmT 99
Cdd:cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTS---GEILLDGKDITNLPPHK----RP--VNTVFQN--Y 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPNpHEamSRYPHQLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:cd03300 82 ALFPHLTVFENIAFGLRL-KKLPKAEIKERVAEALDLVQLEG-YA--NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 180 TTALDVTVQAgilDLVRKLRATHKS---AVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:cd03300 158 LGALDLKLRK---DMQLELKRLQKElgiTFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
2-232 |
9.13e-36 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 128.60 E-value: 9.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARE 81
Cdd:TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKT-TLLTLIGGLRSVQ---EGSLKVLGQELHGASKKQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNeIAMIFQ-----DPMTALTPVytigwQIAEQIraHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGG 156
Cdd:TIGR02982 77 LVQLRRR-IGYIFQahnllGFLTARQNV-----QMALEL--QPNLSYQEARERARAMLEAVGL---GDHLNYYPHNLSGG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDmGVVSELADRVMVMYAGRVV 232
Cdd:TIGR02982 146 QKQRVAIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHD-NRILDVADRILQMEDGKLL 220
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-232 |
1.00e-35 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 128.42 E-value: 1.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 4 SVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRykgreLVGLPARELR 83
Cdd:cd03235 1 EVEDLTVSY----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK----PTSGSIR-----VFGKPLEKER 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLrgneIAMIFQD-------PMTALTPVYTIGWQiaeQIRAHRNISKsKAMERVEELLAEVNfpnpheaMSRYPH----Q 152
Cdd:cd03235 68 KR----IGYVPQRrsidrdfPISVRDVVLMGLYG---HKGLFRRLSK-ADKAKVDEALERVG-------LSELADrqigE 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMyAGRVV 232
Cdd:cd03235 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM-TILVVTHDLGLVLEYFDRVLLL-NRTVV 210
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
22-181 |
1.34e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 125.84 E-value: 1.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnatIEGSIRYKGRELVGLPARELRRlrgnEIAMIFQDPmtAL 101
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP----TEGTILLDGQDLTDDERKSLRK----EIGYVFQDP--QL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEqIRAHRNISKSKAMERVEELLAEVNFPN-PHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPT 180
Cdd:pfam00005 71 FPRLTVRENLRL-GLLLKGLSKREKDARAEEALEKLGLGDlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 639163462 181 T 181
Cdd:pfam00005 150 A 150
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
3-258 |
2.45e-34 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 128.27 E-value: 2.45e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPAREl 82
Cdd:COG3839 4 LELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLE-DPT---SGEILIGGRDVTDLPPKD- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 rrlRGneIAMIFQDPmtALTPVYTIgwqiAEQI----RAhRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMR 158
Cdd:COG3839 75 ---RN--IAMVFQSY--ALYPHMTV----YENIafplKL-RKVPKAEIDRRVREAAELLGL---EDLLDRKPKQLSGGQR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALD----VTVQAGILDLVRKLRAThksaVVFITHD----MGvvseLADRVMVMYAGR 230
Cdd:COG3839 140 QRVALGRALVREPKVFLLDEPLSNLDaklrVEMRAEIKRLHRRLGTT----TIYVTHDqveaMT----LADRIAVMNDGR 211
|
250 260
....*....|....*....|....*...
gi 639163462 231 VVERGSRAELFSDPRHPYTRALLGSiPP 258
Cdd:COG3839 212 IQQVGTPEELYDRPANLFVAGFIGS-PP 238
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
17-240 |
3.40e-34 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 124.40 E-value: 3.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKT--VSLLAVMGLITDPNATIEG-SIRykgRElvglpARELRRlrgnEIAMI 93
Cdd:cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTttIKMLTTLLKPTSGRATVAGhDVV---RE-----PREVRR----RIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 94 FQDPmtALTPVYTiGWQIAEQIRAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:cd03265 79 FQDL--SVDDELT-GWENLYIHARLYGVPGAERRERIDELLDFVGL---LEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
10-240 |
4.92e-34 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 131.49 E-value: 4.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLItDPNatiEGSIRYKGRELVGLPARELRRLrgn 88
Cdd:COG2274 479 VSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKS-TLLKLLlGLY-EPT---SGRILIDGIDLRQIDPASLRRQ--- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 89 eIAMIFQDPM----TaltpvytigwqIAEQIR-AHRNISkskaMERVEELLAEVNFpnpHEAMSRYPH-----------Q 152
Cdd:COG2274 551 -IGVVLQDVFlfsgT-----------IRENITlGDPDAT----DEEIIEAARLAGL---HDFIEALPMgydtvvgeggsN 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVsELADRVMVMYAGRVV 232
Cdd:COG2274 612 LSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRLSTI-RLADRIIVLDKGRIV 688
|
....*...
gi 639163462 233 ERGSRAEL 240
Cdd:COG2274 689 EDGTHEEL 696
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
10-230 |
5.86e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 121.97 E-value: 5.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlvRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd00267 5 LSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKS-TLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR----R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQdpmtaltpvytigwqiaeqirahrniskskamerveellaevnfpnpheamsryphqLSGGMRQRAVIAMALSC 169
Cdd:cd00267 75 IGYVPQ---------------------------------------------------------LSGGQRQRVALARALLL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 170 NPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGR-TVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
17-240 |
7.41e-34 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 125.97 E-value: 7.41e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPaRELRRlrgnEIAMIFQD 96
Cdd:TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTS---GTARVAGYDVVREP-RKVRR----SIGIVPQY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 PMT--ALTpvytiGWQIAEQIRAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALL 174
Cdd:TIGR01188 75 ASVdeDLT-----GRENLEMMGRLYGLPKDEAEERAEELLELFEL---GEAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 175 VADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-242 |
8.91e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 125.13 E-value: 8.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLkvSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKtvSLLAVM--GLItDPNAtieGSIRYKGRELVGLPA 79
Cdd:PRK13635 5 IIRVEHI--SFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGK--STLAKLlnGLL-LPEA---GTITVGGMVLSEETV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRlrgnEIAMIFQDPMTALtpvytIGWQIAEQIR---AHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGG 156
Cdd:PRK13635 77 WDVRR----QVGMVFQNPDNQF-----VGATVQDDVAfglENIGVPREEMVERVDQALRQVGM---EDFLNREPHRLSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGS 236
Cdd:PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGT 223
|
....*.
gi 639163462 237 RAELFS 242
Cdd:PRK13635 224 PEEIFK 229
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-249 |
1.07e-33 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 124.25 E-value: 1.07e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITD--PNATIEGSIRYKGRELVGLPAR 80
Cdd:PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKS-TLLRVFNRLIElyPEARVSGEVYLDGQDIFKMDVI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrgnEIAMIFQDPMTalTPVYTIGWQIAEQIRAHRNI-SKSKAMERVEELLAEVNFPNPHEAMSRYPH-QLSGGMR 158
Cdd:PRK14247 79 ELRR----RVQMVFQIPNP--IPNLSIFENVALGLKLNRLVkSKKELQERVRWALEKAQLWDEVKDRLDAPAgKLSGGQQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
|
250
....*....|.
gi 639163462 239 ELFSDPRHPYT 249
Cdd:PRK14247 231 EVFTNPRHELT 241
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
3-240 |
4.94e-33 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 121.91 E-value: 4.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPAREL 82
Cdd:cd03256 1 IEVENLSKTYP---NGKKALKDVSLSINPGEFVALIGPSGAGKS-TLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGnEIAMIFQDP-----MTALTPV------YTIGWqiaeqiRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRyph 151
Cdd:cd03256 74 RQLRR-QIGMIFQQFnlierLSVLENVlsgrlgRRSTW------RSLFGLFPKEEKQRALAALERVGLLDKAYQRAD--- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
....*....
gi 639163462 232 VERGSRAEL 240
Cdd:cd03256 224 VFDGPPAEL 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-239 |
7.29e-33 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 126.68 E-value: 7.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKT--VSLLavMGLITdPNatiEGSIRYKGRELVGLP 78
Cdd:COG3845 4 PALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKStlMKIL--YGLYQ-PD---SGEILIDGKPVRIRS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 ARELRRLRgneIAMIFQDPMtaLTPVYTIgwqiAEQI------RAHRNISKSKAMERVEELLAEVNFP-NPHeamsRYPH 151
Cdd:COG3845 74 PRDAIALG---IGMVHQHFM--LVPNLTV----AENIvlglepTKGGRLDRKAARARIRELSERYGLDvDPD----AKVE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALdvTVQ--AGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAG 229
Cdd:COG3845 141 DLSVGEQQRVEILKALYRGARILILDEPTAVL--TPQeaDELFEILRRLAAEGKS-IIFITHKLREVMAIADRVTVLRRG 217
|
250
....*....|
gi 639163462 230 RVVERGSRAE 239
Cdd:COG3845 218 KVVGTVDTAE 227
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
3-243 |
1.23e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 120.23 E-value: 1.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPAREL 82
Cdd:cd03224 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlRGneIAMIFQDPM--TALTpvytigwqIAEQIR-AHRNISKSKAMERVEELLAEvnFPNPHEAMSRYPHQLSGGMRQ 159
Cdd:cd03224 73 AR-AG--IGYVPEGRRifPELT--------VEENLLlGAYARRRAKRKARLERVYEL--FPRLKERRKQLAGTLSGGEQQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAE 239
Cdd:cd03224 140 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
....
gi 639163462 240 LFSD 243
Cdd:cd03224 219 LLAD 222
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
9-232 |
1.71e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 119.67 E-value: 1.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 9 KVSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPnatiEGSIRYKGRELvglPARELRRlrgn 88
Cdd:cd03226 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPI---KAKERRK---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 89 EIAMIFQDPMTALT--PVYtigwqiAEQIRAHRNISKSKamERVEELLAEVNfpnPHEAMSRYPHQLSGGMRQRAVIAMA 166
Cdd:cd03226 72 SIGYVMQDVDYQLFtdSVR------EELLLGLKELDAGN--EQAETVLKDLD---LYALKERHPLSLSGGQKQRLAIAAA 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 167 LSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
3-262 |
2.50e-32 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 122.84 E-value: 2.50e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLiTDPNAtieGSIRYKGRELVGLPARel 82
Cdd:TIGR03265 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-ERQTA---GTIYQGGRDITRLPPQ-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGneiaMIFQDpmTALTPVYTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAV 162
Cdd:TIGR03265 75 KRDYG----IVFQS--YALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPGSER---KYPGQLSGGQQQRVA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFS 242
Cdd:TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224
|
250 260
....*....|....*....|
gi 639163462 243 DPRHPYTRALLGSIPPLTGE 262
Cdd:TIGR03265 225 HPATPFVADFVGEVNWLPGT 244
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-240 |
3.19e-32 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 124.75 E-value: 3.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGK-TvsLLAVMGLITDPNatiEGSIRYKGRELVGLPA 79
Cdd:COG1129 3 PLLEMRGISKSF----GGVKALDGVSLELRPGEVHALLGENGAGKsT--LMKILSGVYQPD---SGEILLDGEPVRFRSP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRgneIAMIFQDPMTA--LTpvytigwqIAE------QIRAHRNISKSKAMERVEELLAEVNFP-NPHEAMSRyp 150
Cdd:COG1129 74 RDAQAAG---IAIIHQELNLVpnLS--------VAEniflgrEPRRGGLIDWRAMRRRARELLARLGLDiDPDTPVGD-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 hqLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:COG1129 141 --LSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGV-AIIYISHRLDEVFEIADRVTVLRDGR 217
|
250
....*....|
gi 639163462 231 VVERGSRAEL 240
Cdd:COG1129 218 LVGTGPVAEL 227
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
25-235 |
4.36e-32 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 118.94 E-value: 4.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEEsEILGVVGESGSGKTVSLLAVMGLITDPNATIE--GSIRYKGRELVGLPARElRRlrgneIAMIFQDpmTALT 102
Cdd:cd03297 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVlnGTVLFDSRKKINLPPQQ-RK-----IGLVFQQ--YALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 PVYTIGWQIAEQIRAHRNISKSkamERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTA 182
Cdd:cd03297 88 PHLNVRENLAFGLKRKRNREDR---ISVDELLDLLGL---DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639163462 183 LDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-240 |
5.05e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 124.87 E-value: 5.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDlkVSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAV-MGLItDPNatiEGSIRYKGRELVGLPARE 81
Cdd:COG4988 337 IELED--VSFSYPGG-RPALDGLSLTIPPGERVALVGPSGAGKS-TLLNLlLGFL-PPY---SGSILINGVDLSDLDPAS 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLrgneIAMIFQDPmtaltpvYTIGWQIAEQIR-AHRNISkskaMERVEELLAEVNFpnpHEAMSRYPH--------- 151
Cdd:COG4988 409 WRRQ----IAWVPQNP-------YLFAGTIRENLRlGRPDAS----DEELEAALEAAGL---DEFVAALPDgldtplgeg 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 --QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVsELADRVMVMYAG 229
Cdd:COG4988 471 grGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALL-AQADRILVLDDG 547
|
250
....*....|.
gi 639163462 230 RVVERGSRAEL 240
Cdd:COG4988 548 RIVEQGTHEEL 558
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-240 |
5.32e-32 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 124.37 E-value: 5.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVsfrTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARE 81
Cdd:COG3845 257 VLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRP----PASGSIRLDGEDITGLSPRE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgneIAMIFQDPM-TALTPVYTI------GWQIAEQIRAHRNISKSKAMERVEELLAE--VNFPNPHEAMSryphQ 152
Cdd:COG3845 330 RRRLG---VAYIPEDRLgRGLVPDMSVaenlilGRYRRPPFSRGGFLDRKAIRAFAEELIEEfdVRTPGPDTPAR----S 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:COG3845 403 LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRD-AGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
....*...
gi 639163462 233 ERGSRAEL 240
Cdd:COG3845 482 GEVPAAEA 489
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-234 |
6.50e-32 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 119.58 E-value: 6.50e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGlPar 80
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKT-TLLNLIAGFLAPSS---GEITLDGVPVTG-P-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 elrrlrGNEIAMIFQDpmTALTP---VY---TIGWQIAEQIRAHRNiskskamERVEELLAEVNFpnpHEAMSRYPHQLS 154
Cdd:COG4525 75 ------GADRGVVFQK--DALLPwlnVLdnvAFGLRLRGVPKAERR-------ARAEELLALVGL---ADFARRRIWQLS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDV----TVQAGILDLVRKlraTHKSaVVFITHDmgvVSE---LADRVMVM- 226
Cdd:COG4525 137 GGMRQRVGIARALAADPRFLLMDEPFGALDAltreQMQELLLDVWQR---TGKG-VFLITHS---VEEalfLATRLVVMs 209
|
....*....
gi 639163462 227 -YAGRVVER 234
Cdd:COG4525 210 pGPGRIVER 218
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
25-244 |
1.50e-31 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 120.98 E-value: 1.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLL-AVMGLITDPNATIE--GSIRYKGRELVGLPArELRRlrgneIAMIFQDPmtAL 101
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKT-TLLrAIAGLERPDSGRIRlgGEVLQDSARGIFLPP-HRRR-----IGYVFQEA--RL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIgwqiAEQIR-AHRNISKSKAMERVEELLAEVNFpnphEA-MSRYPHQLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:COG4148 89 FPHLSV----RGNLLyGRKRAPRAERRISFDEVVELLGI----GHlLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 180 TTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:COG4148 161 LAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
2-240 |
2.20e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 119.06 E-value: 2.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYKGREL------- 74
Cdd:COG4152 1 MLELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILG-ILAPD---SGEVLWDGEPLdpedrrr 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VG-LParELRRLRGNeiamifqdpMTaltpvytigwqIAEQIRAH---RNISKSKAMERVEELLAEVNFPnphEAMSRYP 150
Cdd:COG4152 73 IGyLP--EERGLYPK---------MK-----------VGEQLVYLarlKGLSKAEAKRRADEWLERLGLG---DRANKKV 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 HQLSGGMRQRAVIAMALSCNPALLVADEPTTALD-VTVQAgILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:COG4152 128 EELSKGNQQKVQLIAALLHDPELLILDEPFSGLDpVNVEL-LKDVIRELAAKGT-TVIFSSHQMELVEELCDRIVIINKG 205
|
250
....*....|.
gi 639163462 230 RVVERGSRAEL 240
Cdd:COG4152 206 RKVLSGSVDEI 216
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-235 |
2.77e-31 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 116.70 E-value: 2.77e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILsVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNAtieGSIRYKGRELVGLPAR 80
Cdd:cd03266 1 MIT-ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDA---GFATVDGFDVVKEPAE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGNEIAMIFQDPMTALTPVYTIGwqiaeqiRAHrNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQR 160
Cdd:cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFA-------GLY-GLKGDELTARLEELADRLGM---EELLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK-CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
9-243 |
3.42e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 117.78 E-value: 3.42e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 9 KVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGK-TVSLLAVmGLITdPNAtieGSIRYKGRELVGLPARELRrlrg 87
Cdd:PRK13632 12 NVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKsTISKILT-GLLK-PQS---GEIKIDGITISKENLKEIR---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 NEIAMIFQDPMTALtpvytIGWQIAEQIR---AHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIA 164
Cdd:PRK13632 83 KKIGIIFQNPDNQF-----IGATVEDDIAfglENKKVPPKKMKDIIDDLAKKVGM---EDYLDKEPQNLSGGQKQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 165 MALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSeLADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNN 232
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
3-240 |
4.10e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 116.45 E-value: 4.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVglpaREL 82
Cdd:cd03263 1 LQIRNLTKTYKK--GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTS---GTAYINGYSIR----TDR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNeIAMIFQDPM--TALTPvytigwqiAEQIRAH---RNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGM 157
Cdd:cd03263 71 KAARQS-LGYCPQFDAlfDELTV--------REHLRFYarlKGLPKSEIKEEVELLLRVLGLT---DKANKRARTLSGGM 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSR 237
Cdd:cd03263 139 KRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP 216
|
...
gi 639163462 238 AEL 240
Cdd:cd03263 217 QEL 219
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
17-244 |
4.51e-31 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 117.04 E-value: 4.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGREL---VGLPARELRRLRGNeIAMI 93
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKS-SLLRVLNLLETPDS---GQLNIAGHQFdfsQKPSEKAIRLLRQK-VGMV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 94 FQD----P-MTAL-----TPVYTIGwqiaeqirahrnISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAVI 163
Cdd:COG4161 88 FQQynlwPhLTVMenlieAPCKVLG------------LSKEQAREKAMKLLARLRLTDKAD---RFPLHLSGGQQQRVAI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 164 AMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMYAGRVVERGSrAELFSD 243
Cdd:COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVI-VTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQ 230
|
.
gi 639163462 244 P 244
Cdd:COG4161 231 P 231
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
17-235 |
1.04e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 115.04 E-value: 1.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPARElrrlRGneIAMIFQD 96
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPT---SGRIYIGGRDVTDLPPKD----RD--IAMVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 pmTALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVA 176
Cdd:cd03301 81 --YALYPHMTVYDNIAFGLKL-RKVPKDEIDERVREVAELLQI---EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 177 DEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-243 |
1.78e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 116.65 E-value: 1.78e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGL-ITDPNATIEGSirYKgrelvgLPA-----RELRRLRgNEIAMI 93
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLiISETGQTIVGD--YA------IPAnlkkiKEVKRLR-KEIGLV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 94 FQDPMTALTPvYTIGWQIAEQiRAHRNISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:PRK13645 96 FQFPEYQLFQ-ETIEKDIAFG-PVNLGENKQEAYKKVPELLKLVQLP--EDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-253 |
2.27e-30 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 118.60 E-value: 2.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRLRGNEIAMIFQD 96
Cdd:PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKS-TMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 pmTALTPVYTI------GWQIAeqirahrNISKSKAMERVEELLAEVNFPNPHEAmsrYPHQLSGGMRQRAVIAMALSCN 170
Cdd:PRK10070 115 --FALMPHMTVldntafGMELA-------GINAEERREKALDALRQVGLENYAHS---YPDELSGGMRQRVGLARALAIN 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 171 PALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTR 250
Cdd:PRK10070 183 PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
...
gi 639163462 251 ALL 253
Cdd:PRK10070 263 TFF 265
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
22-255 |
2.99e-30 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 117.40 E-value: 2.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnATIEGSIRYKGRELVGLPARElrrlRGneIAMIFQDpmTAL 101
Cdd:TIGR03258 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHK----RG--LALLFQN--YAL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRAHRnISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:TIGR03258 91 FPHLKVEDNVAFGLRAQK-MPKADIAERVADALKLVGLG---DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 182 ALDVTVQAGILDLVRKL-RATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALLGS 255
Cdd:TIGR03258 167 ALDANIRANMREEIAALhEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGA 241
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
25-244 |
2.99e-30 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 114.73 E-value: 2.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNATiEGSIRYKGRELVGLP-ARELRRLRGNeIAMIFQDpmTALTP 103
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKS-SLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPsDKAIRELRRN-VGMVFQQ--YNLWP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 VYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTAL 183
Cdd:PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD---RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 184 DVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMYAGRVVERGSrAELFSDP 244
Cdd:PRK11124 173 DPEITAQIVSIIRELAETGITQVI-VTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQP 231
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-245 |
4.19e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 113.92 E-value: 4.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPAR 80
Cdd:COG0410 2 PMLEVENLHAGY----GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP----PRSGSIRFDGEDITGLPPH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlRGneIAM------IFQDpMTaltpvytigwqIAEQIR----AHRNISKSKA-MERVEELlaevnFPNPHEAMSRY 149
Cdd:COG0410 74 RIAR-LG--IGYvpegrrIFPS-LT-----------VEENLLlgayARRDRAEVRAdLERVYEL-----FPRLKERRRQR 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAG 229
Cdd:COG0410 134 AGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVT-ILLVEQNARFALEIADRAYVLERG 212
|
250
....*....|....*.
gi 639163462 230 RVVERGSRAELFSDPR 245
Cdd:COG0410 213 RIVLEGTAAELLADPE 228
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
10-230 |
4.69e-30 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 112.09 E-value: 4.69e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKT--VSLLavMGLItDPNatiEGSIRYKGRELVGLPARELRRLrg 87
Cdd:cd03228 6 VSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKStlLKLL--LRLY-DPT---SGEILIDGVDLRDLDLESLRKN-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 neIAMIFQDP----MTaltpvytigwqIAEqirahrNIskskamerveellaevnfpnpheamsryphqLSGGMRQRAVI 163
Cdd:cd03228 78 --IAYVPQDPflfsGT-----------IRE------NI-------------------------------LSGGQRQRIAI 107
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 164 AMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVsELADRVMVMYAGR 230
Cdd:cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
2-249 |
6.86e-30 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 114.10 E-value: 6.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAV--MGLItDPNATIEGSIRYKGRELVGlPA 79
Cdd:PRK14239 5 ILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDL-NPEVTITGSIVYNGHNIYS-PR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRgNEIAMIFQDPmtalTPV-YTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNphEAMSRYpHQ----LS 154
Cdd:PRK14239 79 TDTVDLR-KEIGMVFQQP----NPFpMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD--EVKDRL-HDsalgLS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSELADRVMVMYAGRVVER 234
Cdd:PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK--DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
|
250
....*....|....*
gi 639163462 235 GSRAELFSDPRHPYT 249
Cdd:PRK14239 229 NDTKQMFMNPKHKET 243
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-232 |
7.15e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 111.37 E-value: 7.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKT--VSLLAvmGLITdPNatiEGSIRYKGRELVGLPAR 80
Cdd:cd03216 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKStlMKILS--GLYK-PD---SGEILVDGKEVSFASPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRgneIAMIfqdpmtaltpvytigwqiaeqirahrniskskamerveellaevnfpnpheamsrypHQLSGGMRQR 160
Cdd:cd03216 71 DARRAG---IAMV---------------------------------------------------------YQLSVGERQM 90
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGV-AVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
17-253 |
8.02e-30 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 113.65 E-value: 8.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGL--ITDPNATIEGsIRYKGrelvglPARELRRLRgNEIAMIF 94
Cdd:PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLeeITSGDLIVDG-LKVND------PKVDERLIR-QEAGMVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 95 QD----P-MTALTPVytigwqiAEQIRAHRNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAVIAMALSC 169
Cdd:PRK09493 84 QQfylfPhLTALENV-------MFGPLRVRGASKEEAEKQARELLAKVGLA---ERAHHYPSELSGGQQQRVAIARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 170 NPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYT 249
Cdd:PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232
|
....
gi 639163462 250 RALL 253
Cdd:PRK09493 233 QEFL 236
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-256 |
1.42e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 113.22 E-value: 1.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLLAVMGL---ITDPNATIEGSIRYKGRELVGLPARELRRlrgnEIAMIFQDPMTal 101
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKS-TLLKVLNRlieIYDSKIKVDGKVLYFGKDIFQIDAIKLRK----EVGMVFQQPNP-- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVN-FPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPT 180
Cdd:PRK14246 102 FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGlWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 181 TALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYT-RALLGSI 256
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELK--NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTeKYVIGRI 256
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
10-240 |
3.54e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 117.19 E-value: 3.54e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKT--VSLLavMGLItDPNatiEGSIRYKGRELVGLPARELRRLrg 87
Cdd:COG1132 345 VSFSYPGD-RPVLKDISLTIPPGETVALVGPSGSGKStlVNLL--LRFY-DPT---SGRILIDGVDIRDLTLESLRRQ-- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 neIAMIFQDP-MTALTpvytigwqIAEQIR-AHRNISkskaMERVEELLAEVNFpnpHEAMSRYPH-----------QLS 154
Cdd:COG1132 416 --IGVVPQDTfLFSGT--------IRENIRyGRPDAT----DEEVEEAAKAAQA---HEFIEALPDgydtvvgergvNLS 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVsELADRVMVMYAGRVVER 234
Cdd:COG1132 479 GGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR--TTIVIAHRLSTI-RNADRILVLDDGRIVEQ 555
|
....*.
gi 639163462 235 GSRAEL 240
Cdd:COG1132 556 GTHEEL 561
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
25-248 |
3.55e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 114.44 E-value: 3.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIE--GSIRYKGRELVGLPArELRRlrgneIAMIFQDpmTALT 102
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVlnGRTLFDSRKGIFLPP-EKRR-----IGYVFQE--ARLF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 PVYTIGWQIAEQIRAHRNISKSKAMERVEELLaevnfpNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTA 182
Cdd:TIGR02142 88 PHLSVRGNLRYGMKRARPSERRISFERVIELL------GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 183 LDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPY 248
Cdd:TIGR02142 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
25-304 |
8.15e-29 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 113.25 E-value: 8.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRELVGLPARELRrlrgneIAMIFQDpmTALTPV 104
Cdd:PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGL----EHQTSGHIRFHGTDVSRLHARDRK------VGFVFQH--YALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 105 YTIGWQIAEQIRA---HRNISKSKAMERVEELLAEVNFPnpHEAmSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:PRK10851 89 MTVFDNIAFGLTVlprRERPNAAAIKAKVTQLLEMVQLA--HLA-DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 182 ALDVTVQAgilDLVRKLRATH---KSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALLGSIPP 258
Cdd:PRK10851 166 ALDAQVRK---ELRRWLRQLHeelKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVNR 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 639163462 259 LTGEkprrlpaIPGSppsllrlpQGCAFGPRCPVHYEPCEAGKPDL 304
Cdd:PRK10851 243 LQGT-------IRGG--------QFHVGAHRWPLGYTPAYQGPVDL 273
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-231 |
8.27e-29 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 109.06 E-value: 8.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSfrtndglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitDPNATieGSIRYKGRELVGLPARE 81
Cdd:cd03215 4 VLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPAS--GEITLDGKPVTRRSPRD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgneIAMIFQDPM-TALTPVYTIGwqiaeqirahRNISkskamerveellaevnfpnpheamsrYPHQLSGGMRQR 160
Cdd:cd03215 72 AIRAG---IAYVPEDRKrEGLVLDLSVA----------ENIA--------------------------LSSLLSGGNQQK 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK-AVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
2-256 |
1.59e-28 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 113.01 E-value: 1.59e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtnDGlVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK11607 19 LLEIRNLTKSF---DG-QHAVDDVSLTIYKGEIFALLGASGCGKS-TLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlrgNEIAMIFQDpmTALTPVYTIGWQIAEQIRAHRnISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRA 161
Cdd:PRK11607 91 ------RPINMMFQS--YALFPHMTVEQNIAFGLKQDK-LPKAEIASRVNEMLGLVHM---QEFAKRKPHQLSGGQRQRV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTV----QAGILDLVRKLRAThksaVVFITHDMGVVSELADRVMVMYAGRVVERGSR 237
Cdd:PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDILERVGVT----CVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234
|
250
....*....|....*....
gi 639163462 238 AELFSDPRHPYTRALLGSI 256
Cdd:PRK11607 235 EEIYEHPTTRYSAEFIGSV 253
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
3-253 |
1.65e-28 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 110.44 E-value: 1.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSI----------RYKGR 72
Cdd:PRK10619 6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLEKPS---EGSIvvngqtinlvRDKDG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 73 ELVGLPARELRRLRgNEIAMIFQ-----DPMTALTPVYTIGWQIAeqirahrNISKSKAMERVEELLAEVNFPNphEAMS 147
Cdd:PRK10619 78 QLKVADKNQLRLLR-TRLTMVFQhfnlwSHMTVLENVMEAPIQVL-------GLSKQEARERAVKYLAKVGIDE--RAQG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMY 227
Cdd:PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSSHVIFLH 226
|
250 260
....*....|....*....|....*.
gi 639163462 228 AGRVVERGSRAELFSDPRHPYTRALL 253
Cdd:PRK10619 227 QGKIEEEGAPEQLFGNPQSPRLQQFL 252
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-212 |
2.56e-28 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 108.34 E-value: 2.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtNDGLVraIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITDpnatIEGSIRYKGRelvglPA 79
Cdd:COG4133 1 MMLEAENLSCRR--GERLL--FSGLSFTLAAGEALALTGPNGSGKT-TLLrILAGLLPP----SAGEVLWNGE-----PI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRGNEIAMIFQDPM--TALTPvytigwqiAEQIRAHRNISKSKA-MERVEELLAEVNFPnphEAMSRYPHQLSGG 156
Cdd:COG4133 67 RDAREDYRRRLAYLGHADGlkPELTV--------RENLRFWAALYGLRAdREAIDEALEAVGLA---GLADLPVRQLSAG 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHD 212
Cdd:COG4133 136 QKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLA-RGGAVLLTTHQ 190
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
10-235 |
2.73e-28 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 108.43 E-value: 2.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlvRAIDGVSFDLEESeILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPaRELRRLrgne 89
Cdd:cd03264 6 LTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKT-TLMRILATLTPPSS---GTIRIDGQDVLKQP-QKLRRR---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDP-----MTALTPVYTIGWQiaeqirahRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIA 164
Cdd:cd03264 74 IGYLPQEFgvypnFTVREFLDYIAWL--------KGIPSKEVKARVDEVLELVNL---GDRAKKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 165 MALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
37-256 |
2.95e-28 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 111.43 E-value: 2.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 37 VVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELVGLPArELRrlrgnEIAMIFQDpmTALTPVYTIGWQIAEQIR 116
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-PD---SGSIMLDGEDVTNVPP-HLR-----HINMVFQS--YALFPHMTVEENVAFGLK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 117 AhRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTV----QAGIL 192
Cdd:TIGR01187 69 M-RKVPRAEIKPRVLEALRLVQL---EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLrdqmQLELK 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 193 DLVRKLRAThksaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRALLGSI 256
Cdd:TIGR01187 145 TIQEQLGIT----FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEI 204
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-267 |
4.83e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 109.83 E-value: 4.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLkvSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRELVGLPARE 81
Cdd:PRK13647 4 IIEVEDL--HFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI----YLPQRGRVKVMGREVNAENEKW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRrlrgNEIAMIFQDP------MTALTPVyTIGWQiaeqiraHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSG 155
Cdd:PRK13647 77 VR----SKVGLVFQDPddqvfsSTVWDDV-AFGPV-------NMGLDKDEVERRVEEALKAVRM---WDFRDKPPYHLSY 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 639163462 236 SRaELFSDP--------RHPYTRALLGSIPPLTGEK-PRRL 267
Cdd:PRK13647 221 DK-SLLTDEdiveqaglRLPLVAQIFEDLPELGQSKlPLTV 260
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
2-242 |
6.86e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 109.41 E-value: 6.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnatIEGSIRYKGRELVGLPARE 81
Cdd:PRK13642 4 ILEVENLVFKYEKESD-VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE----FEGKVKIDGELLTAENVWN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRlrgnEIAMIFQDPMTALtpvytIGWQIAEQI---RAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMR 158
Cdd:PRK13642 79 LRR----KIGMVFQNPDNQF-----VGATVEDDVafgMENQGIPREEMIKRVDEALLAVNM---LDFKTREPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGSRA 238
Cdd:PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPS 225
|
....
gi 639163462 239 ELFS 242
Cdd:PRK13642 226 ELFA 229
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
9-254 |
7.06e-28 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 107.92 E-value: 7.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 9 KVSFRTNDGLVRAidgvSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARElrrlRGn 88
Cdd:COG3840 6 DLTYRYGDFPLRF----DLTIAAGERVAILGPSGAGKSTLLNLIAGFLP----PDSGRILWNGQDLTALPPAE----RP- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 89 eIAMIFQDpmTALTPVYTIGWQIAEQIRAHRNISkSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALS 168
Cdd:COG3840 73 -VSMLFQE--NNLFPHLTVAQNIGLGLRPGLKLT-AEQRAQVEQALERVGL---AGLLDRLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 169 CNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPY 248
Cdd:COG3840 146 RKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPA 225
|
....*.
gi 639163462 249 TRALLG 254
Cdd:COG3840 226 LAAYLG 231
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
3-235 |
1.91e-27 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 106.15 E-value: 1.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRElVGLPAREL 82
Cdd:cd03268 1 LKTNDLTKTYGKK----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PD---SGEITFDGKS-YQKNIEAL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLrGNEI-AMIFQDPMTALtpvytigwqiaEQIRAHRNIsKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRA 161
Cdd:cd03268 72 RRI-GALIeAPGFYPNLTAR-----------ENLRLLARL-LGIRKKRIDEVLDVVGL---KDSAKKKVKGFSLGMKQRL 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 162 VIAMALSCNPALLVADEPTTALDvtvQAGIL---DLVRKLRATHKSavVFI-THDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03268 136 GIALALLGNPDLLILDEPTNGLD---PDGIKelrELILSLRDQGIT--VLIsSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-253 |
2.28e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 111.78 E-value: 2.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDlkVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAV-MGLItDPNAtieGSIRYKGRELVGLPARE 81
Cdd:COG4987 334 LELED--VSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKS-TLLALlLRFL-DPQS---GSITLGGVDLRDLDEDD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLrgneIAMIFQDP----MTaltpvytigwqIAEQIRahrnISKSKA-MERVEELLAEVNFpnpHEAMSRYPH----- 151
Cdd:COG4987 407 LRRR----IAVVPQRPhlfdTT-----------LRENLR----LARPDAtDEELWAALERVGL---GDWLAALPDgldtw 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 ------QLSGGMRQRAVIAMALSCNPALLVADEPTTALD-VTVQAgILDLVrkLRATHKSAVVFITHDMGVVsELADRVM 224
Cdd:COG4987 465 lgeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDaATEQA-LLADL--LEALAGRTVLLITHRLAGL-ERMDRIL 540
|
250 260
....*....|....*....|....*....
gi 639163462 225 VMYAGRVVERGSRAELFSdpRHPYTRALL 253
Cdd:COG4987 541 VLEDGRIVEQGTHEELLA--QNGRYRQLY 567
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-243 |
4.82e-27 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 110.66 E-value: 4.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTND-GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYK-GRELVGL-- 77
Cdd:TIGR03269 279 IIKVRNVSKRYISVDrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPT---SGEVNVRvGDEWVDMtk 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 78 PARELRRLRGNEIAMIFQDpmTALTPVYTIGWQIAEQIRAhrNISKSKAMERVEELLAEVNFPNPH--EAMSRYPHQLSG 155
Cdd:TIGR03269 355 PGPDGRGRAKRYIGILHQE--YDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKaeEILDKYPDELSE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
....*...
gi 639163462 236 SRAELFSD 243
Cdd:TIGR03269 511 DPEEIVEE 518
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-245 |
6.20e-27 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 106.39 E-value: 6.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAvmgLITDPNATIEGSIRYKGRELVGLPAR 80
Cdd:PRK13548 1 AMLEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKS-TLLR---ALSGELSPDSGEVRLNGRPLADWSPA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRgneiAMIFQDpmTALTPVYTigwqiAEQI----RAHRNISKSKAMERVEELLAEVNFPnpHEAMSRYPhQLSGG 156
Cdd:PRK13548 73 ELARRR----AVLPQH--SSLSFPFT-----VEEVvamgRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYP-QLSGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMAL------SCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:PRK13548 139 EQQRVQLARVLaqlwepDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGR 218
|
250
....*....|....*
gi 639163462 231 VVERGSRAELFSDPR 245
Cdd:PRK13548 219 LVADGTPAEVLTPET 233
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
2-244 |
1.24e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 106.86 E-value: 1.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSF--RTNDGLVrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGRELVGLP- 78
Cdd:PRK13631 21 ILRVKNLYCVFdeKQENELV-ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEl 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 -----------ARELRRLrgneIAMIFQDPMTALTPVyTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPNPHeaMS 147
Cdd:PRK13631 100 itnpyskkiknFKELRRR----VSMVFQFPEYQLFKD-TIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSY--LE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMY 227
Cdd:PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT-VFVITHTMEHVLEVADEVIVMD 250
|
250
....*....|....*..
gi 639163462 228 AGRVVERGSRAELFSDP 244
Cdd:PRK13631 251 KGKILKTGTPYEIFTDQ 267
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
2-244 |
2.21e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 105.16 E-value: 2.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtNDGLVrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYKGRELvGLPARE 81
Cdd:PRK13639 1 ILETRDLKYSY--PDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPT---SGEVLIKGEPI-KYDKKS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgNEIAMIFQDPmtaltpvytigwqiAEQIRAHR------------NISKSKAMERVEELLAEVnfpnpheAMSRY 149
Cdd:PRK13639 73 LLEVR-KTVGIVFQNP--------------DDQLFAPTveedvafgplnlGLSKEEVEKRVKEALKAV-------GMEGF 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 ----PHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLratHKSAVVFI--THDMGVVSELADRV 223
Cdd:PRK13639 131 enkpPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL---NKEGITIIisTHDVDLVPVYADKV 207
|
250 260
....*....|....*....|.
gi 639163462 224 MVMYAGRVVERGSRAELFSDP 244
Cdd:PRK13639 208 YVMSDGKIIKEGTPKEVFSDI 228
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
3-235 |
3.40e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 103.13 E-value: 3.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTndglVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYKGRELVGLPAREL 82
Cdd:cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-IILPD---SGEVLFDGKPLDIAARNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRL---RGNEIAMIFQDPMTALTPVytigwqiaeqirahRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQ 159
Cdd:cd03269 73 GYLpeeRGLYPKMKVIDQLVYLAQL--------------KGLKKEEARRRIDEWLERLEL---SEYANKRVEELSKGNQQ 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT-VILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
2-240 |
3.42e-26 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 105.55 E-value: 3.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRT---NDGL--------------VRAIDGVSFDLEESEILGVVGESGSGK--TVSLLAvmGLITdPNAt 62
Cdd:COG4586 1 IIEVENLSKTYRVyekEPGLkgalkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKstTIKMLT--GILV-PTS- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 63 ieGSIRYKGRElvglPARELRRLRGNeIAMIFqdpmtaltpvytiG------WQI--AEQIRAHR---NISKSKAMERVE 131
Cdd:COG4586 77 --GEVRVLGYV----PFKRRKEFARR-IGVVF-------------GqrsqlwWDLpaIDSFRLLKaiyRIPDAEYKKRLD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 132 EL--LAEVnfpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFI 209
Cdd:COG4586 137 ELveLLDL-----GELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLT 211
|
250 260 270
....*....|....*....|....*....|.
gi 639163462 210 THDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:COG4586 212 SHDMDDIEALCDRVIVIDHGRIIYDGSLEEL 242
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
20-241 |
4.07e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 104.74 E-value: 4.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLI--TDPNATIEG-SIRYKGRELvglpaRELRRlrgnEIAMIFQD 96
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLkpTSGKIIIDGvDITDKKVKL-----SDIRK----KVGLVFQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 PMTALTPvYTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPnpHEAMS-RYPHQLSGGMRQRAVIAMALSCNPALLV 175
Cdd:PRK13637 92 PEYQLFE-ETIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGLD--YEDYKdKSPFELSGGQKRRVAIAGVVAMEPKILI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 176 ADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELF 241
Cdd:PRK13637 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-243 |
4.61e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 104.48 E-value: 4.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEG---SIRYKGRElvglpaRELRRLRgNEIAMIFQDP 97
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVddiTITHKTKD------KYIRPVR-KRIGMVFQFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 98 MTALTPVytigwQIAEQIR---AHRNISKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGG-MRQRAVIAMaLSCNPAL 173
Cdd:PRK13646 95 ESQLFED-----TVEREIIfgpKNFKMNLDEVKNYAHRLLMDLGFS--RDVMSQSPFQMSGGqMRKIAIVSI-LAMNPDI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-235 |
4.70e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 103.18 E-value: 4.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 8 LKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRelvgLPARELRRLRG 87
Cdd:cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PT---SGEVRVAGL----VPWKRRKKFLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 NeIAMIFQDPMTaltpvytIGWQI--AEQIRAHR---NISKSKAMERVEELLAEVNFpnphEAMSRYP-HQLSGGMRQRA 161
Cdd:cd03267 95 R-IGVVFGQKTQ-------LWWDLpvIDSFYLLAaiyDLPPARFKKRLDELSELLDL----EELLDTPvRQLSLGQRMRA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
19-231 |
5.13e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 102.87 E-value: 5.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRLRgNEIAMIFQDpm 98
Cdd:cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKS-TLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQD-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TALTPVYTIGWQIAEQIR----AHRNISKskameRVEELLAEVNFPNPHEAMsryPHQLSGGMRQRAVIAMALSCNPALL 174
Cdd:cd03292 87 FRLLPDRNVYENVAFALEvtgvPPREIRK-----RVPAALELVGLSHKHRAL---PAELSGGEQQRVAIARAIVNSPTIL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 175 VADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:cd03292 159 IADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
25-231 |
6.13e-26 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 102.97 E-value: 6.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRLRGNEIAMIFQdpMTALTPV 104
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKS-TLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ--FHHLLPD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 105 YTIGWQIAEQIRAHrNISKSKAMERVEELLAEVNFPnpHEAMSRyPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALD 184
Cdd:PRK11629 102 FTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLE--HRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639163462 185 VTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELaDRVMVMYAGRV 231
Cdd:PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRL 223
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
10-243 |
6.73e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 103.68 E-value: 6.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:PRK13648 13 VSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-IEKVK---SGEIFYNNQAITDDNFEKLRK----H 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPMTALTPVyTIGWQIAEQIRAHrNISKSKAMERVEELLAEVNFPN--PHEamsryPHQLSGGMRQRAVIAMAL 167
Cdd:PRK13648 85 IGIVFQNPDNQFVGS-IVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLEraDYE-----PNALSGGQKQRVAIAGVL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 168 SCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH 232
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
2-230 |
7.79e-26 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 102.51 E-value: 7.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFR--TNDGL-VRAIDGVSFDLEESEILGVVGESGSGKTvSLLAvmgLITDPNATIEGSIRYKGRE----L 74
Cdd:COG4778 4 LLEVENLSKTFTlhLQGGKrLPVLDGVSFSVAAGECVALTGPSGAGKS-TLLK---CIYGNYLPDSGSILVRHDGgwvdL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 75 VGLPARELRRLRGNEIAMIFQ----DP-MTALTPVytigwqiAEQIRAhRNISKSKAMERVEELLAEVNFPnphEAM-SR 148
Cdd:COG4778 80 AQASPREILALRRRTIGYVSQflrvIPrVSALDVV-------AEPLLE-RGVDREEARARARELLARLNLP---ERLwDL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 149 YPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVSELADRVMVMYA 228
Cdd:COG4778 149 PPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTP 227
|
..
gi 639163462 229 GR 230
Cdd:COG4778 228 FS 229
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
2-244 |
1.22e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 103.34 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK13652 3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTS---GSVLIRGEPITKENIRE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGneiaMIFQDPMTAL-TPvyTIGWQIA---------EQIRAHRnISKSKAMERVEELLaevnfpnpheamSRYPH 151
Cdd:PRK13652 76 VRKFVG----LVFQNPDDQIfSP--TVEQDIAfgpinlgldEETVAHR-VSSALHMLGLEELR------------DRVPH 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:PRK13652 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
|
250
....*....|...
gi 639163462 232 VERGSRAELFSDP 244
Cdd:PRK13652 217 VAYGTVEEIFLQP 229
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
22-246 |
1.34e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 102.16 E-value: 1.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRElVGLParelrrlrGNEIAMIFQDpmTAL 101
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL----AQPTSGGVILEGKQ-ITEP--------GPDRMVVFQN--YSL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQI-RAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPT 180
Cdd:TIGR01184 66 LPWLTVRENIALAVdRVLPDLSKSERRAIVEEHIALVGL---TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 181 TALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL-FSDPRH 246
Cdd:TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRD 209
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
2-242 |
1.66e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 102.89 E-value: 1.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPARE 81
Cdd:PRK13650 4 IIEVKNLTFKYKEDQEKY-TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL----EAESGQIIIDGDLLTEENVWD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRlrgnEIAMIFQDPMTALtpvytIGWQIAEQIR---AHRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMR 158
Cdd:PRK13650 79 IRH----KIGMVFQNPDNQF-----VGATVEDDVAfglENKGIPHEEMKERVNEALELVGMQDFKE---REPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDvtvQAGILDL---VRKLRATHKSAVVFITHDMGVVSeLADRVMVMYAGRVVERG 235
Cdd:PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLD---PEGRLELiktIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTS 222
|
....*..
gi 639163462 236 SRAELFS 242
Cdd:PRK13650 223 TPRELFS 229
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
10-240 |
2.29e-25 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 106.20 E-value: 2.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTnDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:PRK13657 340 VSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKS-TLINLLQRVFDPQS---GRILIDGTDIRTVTRASLRR----N 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPMTaltpvytIGWQIAEQIRahrnISKSKAMErvEELLAEVNFPNPHEAMSRYPH-----------QLSGGMR 158
Cdd:PRK13657 411 IAVVFQDAGL-------FNRSIEDNIR----VGRPDATD--EEMRAAAERAQAHDFIERKPDgydtvvgergrQLSGGER 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGI---LDLVRKLRAThksavVFITHDMGVVSElADRVMVMYAGRVVERG 235
Cdd:PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVkaaLDELMKGRTT-----FIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
....*
gi 639163462 236 SRAEL 240
Cdd:PRK13657 552 SFDEL 556
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-249 |
2.65e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 101.84 E-value: 2.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDglvrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLIT-DPNATIEGSIRYKGRELVG--LPA 79
Cdd:PRK14267 5 IETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElNEEARVEGEVRLFGRNIYSpdVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRlrgnEIAMIFQDPMTalTPVYTIGWQIAEQIRAHRNI-SKSKAMERVEELLAEVN-FPNPHEAMSRYPHQLSGGM 157
Cdd:PRK14267 81 IEVRR----EVGMVFQYPNP--FPHLTIYDNVAIGVKLNGLVkSKKELDERVEWALKKAAlWDEVKDRLNDYPSNLSGGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELADRVMVMYAGRVVERGSR 237
Cdd:PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232
|
250
....*....|..
gi 639163462 238 AELFSDPRHPYT 249
Cdd:PRK14267 233 RKVFENPEHELT 244
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-245 |
3.11e-25 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 101.26 E-value: 3.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELVGLP-- 78
Cdd:COG1137 2 MTLEAENLVKSYGKR----TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVK-PD---SGRIFLDGEDITHLPmh 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 --ARelrrlRGneI------AMIFQDpmtaLTpvytigwqIAEQIRA---HRNISKSKAMERVEELLAEvnFPNPHEAMS 147
Cdd:COG1137 74 krAR-----LG--IgylpqeASIFRK----LT--------VEDNILAvleLRKLSKKEREERLEELLEE--FGITHLRKS 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RyPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALD-VTVqAGILDLVRKLRatHKSAVVFIT-HDmgvVSE---LADR 222
Cdd:COG1137 133 K-AYSLSGGERRRVEIARALATNPKFILLDEPFAGVDpIAV-ADIQKIIRHLK--ERGIGVLITdHN---VREtlgICDR 205
|
250 260
....*....|....*....|...
gi 639163462 223 VMVMYAGRVVERGSRAELFSDPR 245
Cdd:COG1137 206 AYIISEGKVLAEGTPEEILNNPL 228
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
17-230 |
4.51e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 105.01 E-value: 4.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITdPNATIEGSIRYKGRELVglpARELRRLRGNEIAMIFQD 96
Cdd:PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKS-TLMKVLSGVY-PHGTYEGEIIFEGEELQ---ASNIRDTERAGIAIIHQE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 PMtaLTPVYTIGWQI---AEQIRAHRnISKSKAMERVEELLAEVNFP-NPHEAMSryphQLSGGMRQRAVIAMALSCNPA 172
Cdd:PRK13549 91 LA--LVKELSVLENIflgNEITPGGI-MDYDAMYLRAQKLLAQLKLDiNPATPVG----NLGLGQQQLVEIAKALNKQAR 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 173 LLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-256 |
5.29e-25 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 103.49 E-value: 5.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDglvrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLiTDPNAtieGSIRYKGRELVGLPArE 81
Cdd:PRK09452 14 LVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDS---GRIMLDGQDITHVPA-E 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRrlrgnEIAMIFQDpmTALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFpnphEAMS-RYPHQLSGGMRQR 160
Cdd:PRK09452 85 NR-----HVNTVFQS--YALFPHMTVFENVAFGLRM-QKTPAAEITPRVMEALRMVQL----EEFAqRKPHQLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALD----VTVQAGILDLVRKLRAThksaVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:PRK09452 153 VAIARAVVNKPKVLLLDESLSALDyklrKQMQNELKALQRKLGIT----FVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
250 260
....*....|....*....|
gi 639163462 237 RAELFSDPRHPYTRALLGSI 256
Cdd:PRK09452 229 PREIYEEPKNLFVARFIGEI 248
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-244 |
7.35e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 101.25 E-value: 7.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELV-GLPARELRRLRgNEIAMIFQDPM 98
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PT---SGTVTIGERVITaGKKNKKLKPLR-KKVGIVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TaltpvytigwQIAEQIRAhRNI---------SKSKAMERVEELLAEVNFPnpHEAMSRYPHQLSGGMRQRAVIAMALSC 169
Cdd:PRK13634 96 H----------QLFEETVE-KDIcfgpmnfgvSEEDAKQKAREMIELVGLP--EELLARSPFELSGGQMRRVAIAGVLAM 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 170 NPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
3-212 |
8.42e-25 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 99.48 E-value: 8.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSfRTNDGLVRaidGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNATIEGSIRYKGRELVGLPArEL 82
Cdd:COG4136 2 LSLENLTIT-LGGRPLLA---PLSLTVAPGEILTLMGPSGSGKS-TLLAAIAGTLSPAFSASGEVLLNGRRLTALPA-EQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgneIAMIFQDPMtaLTPVYTIGWQIAEQIRAhrNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAV 162
Cdd:COG4136 76 RR-----IGILFQDDL--LFPHLSVGENLAFALPP--TIGRAQRRARVEQALEEAGLAGFAD---RDPATLSGGQRARVA 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHD 212
Cdd:COG4136 144 LLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
10-243 |
1.07e-24 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 99.61 E-value: 1.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvsllAVMGLIT---DPNatiEGSIRYKGRELVGLPARELRRlr 86
Cdd:cd03251 6 VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKS----TLVNLIPrfyDVD---SGRILIDGHDVRDYTLASLRR-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 87 gnEIAMIFQDpmtaltpVYTIGWQIAEQIR-AHRNISkskaMERVEELLAEVNfpnPHEAMSRYPH-----------QLS 154
Cdd:cd03251 77 --QIGLVSQD-------VFLFNDTVAENIAyGRPGAT----REEVEEAARAAN---AHEFIMELPEgydtvigergvKLS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVT----VQAGILDLVRklratHKSAVVfITHDMGVVsELADRVMVMYAGR 230
Cdd:cd03251 141 GGQRQRIAIARALLKDPPILILDEATSALDTEserlVQAALERLMK-----NRTTFV-IAHRLSTI-ENADRIVVLEDGK 213
|
250
....*....|...
gi 639163462 231 VVERGSRAELFSD 243
Cdd:cd03251 214 IVERGTHEELLAQ 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-249 |
1.22e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 100.56 E-value: 1.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGsIRYKGRELVG----LPARELRRLRgNEIAMIFQDP 97
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM----NDKVSG-YRYSGDVLLGgrsiFNYRDVLEFR-RRVGMLFQRP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 98 mtalTPV-YTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNP-HEAMSRYPHQLSGGMRQRAVIAMALSCNPALLV 175
Cdd:PRK14271 111 ----NPFpMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAvKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 176 ADEPTTALDVTVQAGILDLVRKLraTHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYT 249
Cdd:PRK14271 187 LDEPTSALDPTTTEKIEEFIRSL--ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
230-314 |
1.72e-24 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 94.74 E-value: 1.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 230 RVVERGSRAELFSDPRHPYTRALLGSIPPLtGEKPRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPCEAGKPDL--GSG 307
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTI-KKRDRKLISIPGEVPSLINLPSGCRFYPRCPYAQDECRKEPPALveIAE 79
|
....*..
gi 639163462 308 THAAACF 314
Cdd:TIGR01727 80 GHRVACH 86
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-240 |
2.10e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 102.79 E-value: 2.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSfrtndglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitDPNATieGSIRYKGREL-VGLPAR 80
Cdd:COG1129 256 VLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGA--DPADS--GEIRLDGKPVrIRSPRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrGneIAMIFQDPMT-ALTPVYTIGWQIA----EQIRAHRNISKSKAMERVEELLAEVN--FPNPHEAMSryphQL 153
Cdd:COG1129 324 AIRA--G--IAYVPEDRKGeGLVLDLSIRENITlaslDRLSRGGLLDRRRERALAEEYIKRLRikTPSPEQPVG----NL 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:COG1129 396 SGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK-AVIVISSELPELLGLSDRILVMREGRIVG 474
|
....*..
gi 639163462 234 RGSRAEL 240
Cdd:COG1129 475 ELDREEA 481
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-242 |
3.29e-24 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 98.93 E-value: 3.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPAR 80
Cdd:PRK11231 1 MTLRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT----PQSGTVFLGDKPISMLSSR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrgnEIAMIFQDPMT------------ALTPVYTIGWQIAEQIRAHRNisksKAMERVE-ELLAEvnfpnpheams 147
Cdd:PRK11231 73 QLAR----RLALLPQHHLTpegitvrelvayGRSPWLSLWGRLSAEDNARVN----QAMEQTRiNHLAD----------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMY 227
Cdd:PRK11231 134 RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT-VVTVLHDLNQASRYCDHLVVLA 212
|
250
....*....|....*
gi 639163462 228 AGRVVERGSRAELFS 242
Cdd:PRK11231 213 NGHVMAQGTPEEVMT 227
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-245 |
4.05e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 101.07 E-value: 4.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPAR 80
Cdd:PRK09536 2 PMIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTA---GTVLVAGDDVEALSAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLrgneIAMIFQDpmTALTPVYTiGWQIAEQIRA-HR------NISKSKAMERVEELLAEVNFPNpheamsRYPHQL 153
Cdd:PRK09536 74 AASRR----VASVPQD--TSLSFEFD-VRQVVEMGRTpHRsrfdtwTETDRAAVERAMERTGVAQFAD------RPVTSL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFItHDMGVVSELADRVMVMYAGRVVE 233
Cdd:PRK09536 141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRA 219
|
250
....*....|..
gi 639163462 234 RGSRAELFSDPR 245
Cdd:PRK09536 220 AGPPADVLTADT 231
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
10-241 |
6.01e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 97.68 E-value: 6.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPARELRRLrgne 89
Cdd:cd03254 8 VNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQ---KGQILIDGIDIRDISRKSLRSM---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPmtaltpvYTIGWQIAEQIRAHRNISKskaMERVEELLAEVNFpnpHEAMSRYP-----------HQLSGGMR 158
Cdd:cd03254 79 IGVVLQDT-------FLFSGTIMENIRLGRPNAT---DEEVIEAAKEAGA---HDFIMKLPngydtvlgengGNLSQGER 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGSRA 238
Cdd:cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHD 222
|
...
gi 639163462 239 ELF 241
Cdd:cd03254 223 ELL 225
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
19-242 |
7.26e-24 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 97.61 E-value: 7.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTvsllAVMGLIT---DPNatiEGSIRYKGRELVGLPARELRRLrgneIAMIFQ 95
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKS----TVVSLLErfyDPT---SGEILLDGVDIRDLNLRWLRSQ----IGLVSQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 96 DPMTALTpvyTIGWqiaeqirahrNISKSKAMERVEELLAEVNFPNPHEAMSRYPH-----------QLSGGMRQRAVIA 164
Cdd:cd03249 85 EPVLFDG---TIAE----------NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDgydtlvgergsQLSGGQKQRIAIA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 165 MALSCNPALLVADEPTTALDV----TVQAGiLDLVRKLRAThksavVFITHDMGVVSElADRVMVMYAGRVVERGSRAEL 240
Cdd:cd03249 152 RALLRNPKILLLDEATSALDAesekLVQEA-LDRAMKGRTT-----IVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDEL 224
|
..
gi 639163462 241 FS 242
Cdd:cd03249 225 MA 226
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
21-243 |
1.09e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 97.85 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGreLVGLPARELRRLRgNEIAMIFQDPMTA 100
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKS-TIAKHMNALLIPS---EGKVYVDG--LDTSDEENLWDIR-NKAGMVFQNPDNQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 LtpVYTIgwqIAEQIR---AHRNISKSKAMERVEELLAEVNfpnpheaMSRY----PHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:PRK13633 98 I--VATI---VEEDVAfgpENLGIPPEEIRERVDESLKKVG-------MYEYrrhaPHLLSGGQKQRVAIAGILAMRPEC 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13633 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
10-240 |
1.09e-23 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 96.92 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd03253 6 VTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKS-TILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRR----A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDpmtalTPVY--TIGWQIAeqiraHRNISKSKamERVEE--LLAEVnfpnpHEAMSRYPHQ-----------LS 154
Cdd:cd03253 77 IGVVPQD-----TVLFndTIGYNIR-----YGRPDATD--EEVIEaaKAAQI-----HDKIMRFPDGydtivgerglkLS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSaVVFITHDMGVVSElADRVMVMYAGRVVER 234
Cdd:cd03253 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRT-TIVIAHRLSTIVN-ADKIIVLKDGRIVER 216
|
....*.
gi 639163462 235 GSRAEL 240
Cdd:cd03253 217 GTHEEL 222
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-244 |
1.37e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 97.95 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDlkVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGK-TVSLLaVMGLITdPNATIEGSIRYKGRELVGLPAR 80
Cdd:PRK13640 5 IVEFKH--VSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKsTISKL-INGLLL-PDDNPNSKITVDGITLTAKTVW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRrlrgNEIAMIFQDPMTALTPVyTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPNPHEAMsryPHQLSGGMRQR 160
Cdd:PRK13640 81 DIR----EKVGIVFQNPDNQFVGA-TVGDDVAFGLE-NRAVPRPEMIKIVRDVLADVGMLDYIDSE---PANLSGGQKQR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGvVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEI 230
|
....
gi 639163462 241 FSDP 244
Cdd:PRK13640 231 FSKV 234
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
2-254 |
6.15e-23 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 95.44 E-value: 6.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtnDGLVrAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK11300 5 LLSVSGLMMRF---GGLL-AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTG---GTILLRGQHIEGLPGHQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRL---RGNEIAMIFQDpMTALTPVYtigwqIAEQIRAHRNI------------SKSKAMERVEELLAEVNFpnpHEAM 146
Cdd:PRK11300 77 IARMgvvRTFQHVRLFRE-MTVIENLL-----VAQHQQLKTGLfsgllktpafrrAESEALDRAATWLERVGL---LEHA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 147 SRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVM 226
Cdd:PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
250 260
....*....|....*....|....*...
gi 639163462 227 YAGRVVERGSRAELFSDPRhpYTRALLG 254
Cdd:PRK11300 228 NQGTPLANGTPEEIRNNPD--VIKAYLG 253
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
232-297 |
1.77e-22 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 88.61 E-value: 1.77e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 232 VERGSRAELFSDPRHPYTRALLGSIPPLTGEKpRRLPAIPGSPPSLLRLPQGCAFGPRCPVHYEPC 297
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPK-RPLYTIPGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
10-242 |
2.11e-22 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 97.48 E-value: 2.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:TIGR02203 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS-TLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRR----Q 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDpmtaltpVYTIGWQIAEQIRAHRniSKSKAMERVEELLAEVNFPNPHEAMSRYPHQ--------LSGGMRQRA 161
Cdd:TIGR02203 408 VALVSQD-------VVLFNDTIANNIAYGR--TEQADRAEIERALAAAYAQDFVDKLPLGLDTpigengvlLSGGQRQRL 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVT----VQAGiLDLVRKLRAThksavVFITHDMGVVsELADRVMVMYAGRVVERGSR 237
Cdd:TIGR02203 479 AIARALLKDAPILILDEATSALDNEserlVQAA-LERLMQGRTT-----LVIAHRLSTI-EKADRIVVMDDGRIVERGTH 551
|
....*
gi 639163462 238 AELFS 242
Cdd:TIGR02203 552 NELLA 556
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-232 |
5.43e-22 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 96.05 E-value: 5.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITdPNATIEGSIRYKGRELVglpARELRRLRGNEIAMIFQD 96
Cdd:TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKS-TLMKILSGVY-PHGTWDGEIYWSGSPLK---ASNIRDTERAGIVIIHQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 PMtaLTPVYTIGWQI--AEQIRAHRNISKSKAM-ERVEELLAEVNFPNphEAMSRYPHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:TIGR02633 87 LT--LVPELSVAENIflGNEITLPGGRMAYNAMyLRAKNLLRELQLDA--DNVTRPVGDYGGGQQQLVEIAKALNKQARL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:TIGR02633 163 LILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
20-234 |
1.20e-21 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 92.07 E-value: 1.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGlparelrrlRGNEIAMIFQDpmT 99
Cdd:PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQH---GSITLDGKPVEG---------PGAERGVVFQN--E 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPvytigWQIAEQIRAH----RNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLV 175
Cdd:PRK11248 80 GLLP-----WRNVQDNVAFglqlAGVEKMQRLEIAHQMLKKVGL---EGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 176 ADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMY--AGRVVER 234
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSpgPGRVVER 212
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
2-264 |
1.30e-21 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 95.18 E-value: 1.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKS-TLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQ--DPMTALTPVytigwQIAEQIRAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQ 159
Cdd:PRK10535 80 LAQLRREHFGFIFQryHLLSHLTAA-----QNVEVPAVYAGLERKQRLLRAQELLQRLGL---EDRVEYQPSQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSElADRVMVMYAGRVVergsrae 239
Cdd:PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHT-VIIVTHDPQVAAQ-AERVIEIRDGEIV------- 222
|
250 260
....*....|....*....|....*
gi 639163462 240 lfSDPRHPYTRALLGSIPPLTGEKP 264
Cdd:PRK10535 223 --RNPPAQEKVNVAGGTEPVVNTAS 245
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-267 |
1.31e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 92.36 E-value: 1.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 5 VRDLKVSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiegsiryKGRELV-GLPARELR 83
Cdd:PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQ---------KGKVLVsGIDTGDFS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLRG--NEIAMIFQDPMTALtpvytIGWQIAEQIR---AHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMR 158
Cdd:PRK13644 71 KLQGirKLVGIVFQNPETQF-----VGRTVEEDLAfgpENLCLPPIEIRKRVDRALAEIGL---EKYRHRSPKTLSGGQG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMgvvSEL--ADRVMVMYAGRVVERGS 236
Cdd:PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT-IVYITHNL---EELhdADRIIVMDRGKIVLEGE 218
|
250 260 270
....*....|....*....|....*....|.
gi 639163462 237 RAELFSDPRHPYtralLGSIPPLTGEKPRRL 267
Cdd:PRK13644 219 PENVLSDVSLQT----LGLTPPSLIELAENL 245
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
3-244 |
1.37e-21 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 91.07 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELVGLPAREL 82
Cdd:cd03218 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PD---SGKILLDGQDITKLPMHKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLrG-----NEiAMIFQDpmtaLTpvytigwqIAEQIRA---HRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLS 154
Cdd:cd03218 73 ARL-GigylpQE-ASIFRK----LT--------VEENILAvleIRGLSKKEREEKLEELLEEFHI---THLRKSKASSLS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAthKSAVVFIT-HDMGVVSELADRVMVMYAGRVVE 233
Cdd:cd03218 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITdHNVRETLSITDRAYIIYEGKVLA 213
|
250
....*....|.
gi 639163462 234 RGSRAELFSDP 244
Cdd:cd03218 214 EGTPEEIAANE 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
10-235 |
1.46e-21 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 90.73 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd03245 8 VSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PT-SGSVLLDGTDIRQLDPADLRR----N 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPmtaltpvytigWQIAEQIRahRNISKSKAMERVEELLAEVNFPNPHEAMSRYPH-----------QLSGGMR 158
Cdd:cd03245 80 IGYVPQDV-----------TLFYGTLR--DNITLGAPLADDERILRAAELAGVTDFVNKHPNgldlqigergrGLSGGQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVfITHDMGVVSeLADRVMVMYAGRVVERG 235
Cdd:cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLII-ITHRPSLLD-LVDRIIVMDSGRIVADG 220
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
20-232 |
1.52e-21 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 90.70 E-value: 1.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRLRgNEIAMIFQDPMT 99
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKS-TLLKLICGIERPSA---GKIWFSGHDITRLKNREVPFLR-RQIGMIFQDHHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALT-PVY-------TIGWQIAEQIRahRNISKskAMERVEELLAEVNFPNpheamsryphQLSGGMRQRAVIAMALSCNP 171
Cdd:PRK10908 91 LMDrTVYdnvaiplIIAGASGDDIR--RRVSA--ALDKVGLLDKAKNFPI----------QLSGGEQQRVGIARAVVNKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 172 ALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
3-231 |
1.96e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 89.20 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDlkVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpnatIEGSIRYKGRELVGLPAREL 82
Cdd:cd03246 1 LEVEN--VSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLrgneIAMIFQDpmtaltpVYTIGWQIAEQIrahrniskskamerveellaevnfpnpheamsryphqLSGGMRQRAV 162
Cdd:cd03246 75 GDH----VGYLPQD-------DELFSGSIAENI-------------------------------------LSGGQRQRLG 106
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVsELADRVMVMYAGRV 231
Cdd:cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDGRV 173
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-242 |
3.17e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 91.22 E-value: 3.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLkvSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNatiEGSIRYKGRELvGLPARE 81
Cdd:PRK13638 1 MLATSDL--WFRYQDEPV--LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQ---KGAVLWQGKPL-DYSKRG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgNEIAMIFQDPMTALtpVYT-IGWQIAEQIRaHRNISKSKAMERVEELLAEVNfpnpheaMSRYPHQ----LSGG 156
Cdd:PRK13638 72 LLALR-QQVATVFQDPEQQI--FYTdIDSDIAFSLR-NLGVPEAEITRRVDEALTLVD-------AQHFRHQpiqcLSHG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI-VAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
....*.
gi 639163462 237 RAELFS 242
Cdd:PRK13638 220 PGEVFA 225
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-250 |
3.46e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 90.87 E-value: 3.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpnATIEGSIRYKGR-ELVGLPARE 81
Cdd:PRK14258 8 IKVNNLSFYYDTQ----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-----NELESEVRVEGRvEFFNQNIYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LR----RLRgNEIAMIFQDPMTALTPVY--------TIGWQIAEQIRahrNISKSKAmeRVEELLAEVNFPNPHEAMsry 149
Cdd:PRK14258 79 RRvnlnRLR-RQVSMVHPKPNLFPMSVYdnvaygvkIVGWRPKLEID---DIVESAL--KDADLWDEIKHKIHKSAL--- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 phQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYA- 228
Cdd:PRK14258 150 --DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGn 227
|
250 260
....*....|....*....|....*.
gi 639163462 229 ----GRVVERGSRAELFSDPRHPYTR 250
Cdd:PRK14258 228 enriGQLVEFGLTKKIFNSPHDSRTR 253
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-226 |
4.23e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.51 E-value: 4.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPAREL 82
Cdd:TIGR02857 322 LEFSGVSVAYP---GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPT---EGSIAVNGVPLADADADSW 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDP-MTALTpvytigwqIAEQIRAHRNISKSKAMERVEELLAEVNF----PNPHEAM-SRYPHQLSGG 156
Cdd:TIGR02857 395 RD----QIAWVPQHPfLFAGT--------IAENIRLARPDASDAEIREALERAGLDEFvaalPQGLDTPiGEGGAGLSGG 462
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVsELADRVMVM 226
Cdd:TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALA-ALADRIVVL 529
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
22-247 |
4.36e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 93.57 E-value: 4.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNATIEGSIRYKGRELvglPARELRRLRgneiAMIFQDPMtaL 101
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-KGVKGSGSVLLNGMPI---DAKEMRAIS----AYVQQDDL--F 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTI--GWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQ---LSGGMRQRAVIAMALSCNPALLVA 176
Cdd:TIGR00955 111 IPTLTVreHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGERKRLAFASELLTDPPLLFC 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 177 DEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGS---RAELFSDPRHP 247
Cdd:TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSpdqAVPFFSDLGHP 264
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
20-244 |
4.38e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 91.04 E-value: 4.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVG-LPARELRRLRgNEIAMIFQDPM 98
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSS---GTITIAGYHITPeTGNKNLKKLR-KKVSLVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TALtpvytIGWQIAEQIR-AHRN--ISKSKAMERVEELLAEVNFPNphEAMSRYPHQLSGGMRQRAVIAMALSCNPALLV 175
Cdd:PRK13641 96 AQL-----FENTVLKDVEfGPKNfgFSEDEAKEKALKWLKKVGLSE--DLISKSPFELSGGQMRRVAIAGVMAYEPEILC 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 176 ADEPTTALDVTVQAGILDLVRKL-RATHksAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYqKAGH--TVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-243 |
5.79e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 89.76 E-value: 5.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDlkVSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTvSLLavmGLIT-DPNATIEGSIRYKGRELVGLPA 79
Cdd:COG1119 2 PLLELRN--VTVRRGGKTI--LDDISWTVKPGEHWAILGPNGAGKS-TLL---SLITgDLPPTYGNDVRLFGERRGGEDV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRG---NEIAMIFQDPMTALTPVYT-----IG-WQI--AEQIrahrniskskamERVEELLAEVNFpnpHEAMSR 148
Cdd:COG1119 74 WELRKRIGlvsPALQLRFPRDETVLDVVLSgffdsIGlYREptDEQR------------ERARELLELLGL---AHLADR 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 149 YPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDmgvVSELAD---RVMV 225
Cdd:COG1119 139 PFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHH---VEEIPPgitHVLL 215
|
250
....*....|....*...
gi 639163462 226 MYAGRVVERGSRAELFSD 243
Cdd:COG1119 216 LKDGRVVAAGPKEEVLTS 233
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
10-242 |
8.58e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 89.08 E-value: 8.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNatieGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:cd03252 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN----GRVLVDGHDLALADPAWLRR----Q 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPMTaltpvytIGWQIAEqirahrNISKSKAMERVEELLAEVNFPNPHEAMSRYPH-----------QLSGGMR 158
Cdd:cd03252 78 VGVVLQENVL-------FNRSIRD------NIALADPGMSMERVIEAAKLAGAHDFISELPEgydtivgeqgaGLSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSElADRVMVMYAGRVVERGSRA 238
Cdd:cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHD 221
|
....
gi 639163462 239 ELFS 242
Cdd:cd03252 222 ELLA 225
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
17-252 |
8.64e-21 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 91.32 E-value: 8.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdPNATiEGSIRYKGRELVGlparelRRLRGNEIAMIFQD 96
Cdd:PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL---EKPT-EGQIFIDGEDVTH------RSIQQRDICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 pmTALTPVYTIGWQIAEQIRAhRNISKSKAMERVEELLAEVNFPNPHEamsRYPHQLSGGMRQRAVIAMALSCNPALLVA 176
Cdd:PRK11432 87 --YALFPHMSLGENVGYGLKM-LGVPKEERKQRVKEALELVDLAGFED---RYVDQISGGQQQRVALARALILKPKVLLF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 177 DEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFsdpRHPYTRAL 252
Cdd:PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY---RQPASRFM 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
2-232 |
1.57e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 88.99 E-value: 1.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtNDGLV---RAIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLIT-DpnatiEGSIRYKGRELVG 76
Cdd:COG1101 1 MLELKNLSKTF--NPGTVnekRALDGLNLTIEEGDFVTVIGSNGAGKS-TLLnAIAGSLPpD-----SGSILIDGKDVTK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 77 LPARElrrlRGNEIAMIFQDPM--TA--LTpvytigwqIAEQI-----RAHR---NISKSKAM-ERVEELLAEVN--FPN 141
Cdd:COG1101 73 LPEYK----RAKYIGRVFQDPMmgTApsMT--------IEENLalayrRGKRrglRRGLTKKRrELFRELLATLGlgLEN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 142 -PHEAMSryphQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELA 220
Cdd:COG1101 141 rLDTKVG----LLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYG 216
|
250
....*....|..
gi 639163462 221 DRVMVMYAGRVV 232
Cdd:COG1101 217 NRLIMMHEGRII 228
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
3-242 |
2.00e-20 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 88.36 E-value: 2.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRtndglvraIDGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLITDpnatiEGSIRYKGRELVGLPARE 81
Cdd:COG4138 1 LQLNDVAVAGR--------LGPISAQVNAGELIHLIGPNGAGKS-TLLARMaGLLPG-----QGEILLNGRPLSDWSAAE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgneiAMIFQ-DPMTALTPVYtigwqiaEQIRAHRniSKSKAMERVEELLAEVNfpnphEA------MSRYPHQLS 154
Cdd:COG4138 67 LARHR----AYLSQqQSPPFAMPVF-------QYLALHQ--PAGASSEAVEQLLAQLA-----EAlgledkLSRPLTQLS 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMAL-----SCNP--ALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFItHDMGVVSELADRVMVMY 227
Cdd:COG4138 129 GGEWQRVRLAAVLlqvwpTINPegQLLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSS-HDLNHTLRHADRVWLLK 207
|
250
....*....|....*
gi 639163462 228 AGRVVERGSRAELFS 242
Cdd:COG4138 208 QGKLVASGETAEVMT 222
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
19-233 |
2.88e-20 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 91.00 E-value: 2.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLItdPNATIEGSIRYKGRElvglpaRELRRLRGNE---IAMIF 94
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKS-TLMKVLsGVY--PHGSYEGEILFDGEV------CRFKDIRDSEalgIVIIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 95 QDpmTALTPVYTIgwqiAEQI-----RAHRN-ISKSKAMERVEELLAEVNFP-NPHEAMSryphQLSGGMRQRAVIAMAL 167
Cdd:NF040905 85 QE--LALIPYLSI----AENIflgneRAKRGvIDWNETNRRARELLAKVGLDeSPDTLVT----DIGVGKQQLVEIAKAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 168 SCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:NF040905 155 SKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSII-ISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-222 |
4.16e-20 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 87.14 E-value: 4.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKS-TLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQDPMtaLTPvyTIGWQIAEQIRAH-RNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQR 160
Cdd:PRK10584 82 RAKLRAKHVGFVFQSFM--LIP--TLNALENVELPALlRGESSRQSRNGAKALLEQLGL---GKRLDHLPAQLSGGEQQR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDmgvvSELADR 222
Cdd:PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD----LQLAAR 212
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
3-242 |
4.33e-20 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 90.58 E-value: 4.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRdlKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPAREL 82
Cdd:COG4618 331 LSVE--NLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVW----PPTAGSVRLDGADLSQWDREEL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 rrlrGNEIAMIFQDPmtAL---TpvytigwqIAEqirahrNISKSKA--MERVEE--LLAEVnfpnpHEAMSRYP----- 150
Cdd:COG4618 405 ----GRHIGYLPQDV--ELfdgT--------IAE------NIARFGDadPEKVVAaaKLAGV-----HEMILRLPdgydt 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 ------HQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSElADRVM 224
Cdd:COG4618 460 rigeggARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKA-RGATVVVITHRPSLLAA-VDKLL 537
|
250
....*....|....*...
gi 639163462 225 VMYAGRVVERGSRAELFS 242
Cdd:COG4618 538 VLRDGRVQAFGPRDEVLA 555
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1-243 |
5.48e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 88.22 E-value: 5.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFrtNDGL---VRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIR--------- 68
Cdd:PRK13651 1 MQIKVKNIVKIF--NKKLpteLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKdeknkkktk 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 69 ----YKGRELVGLP-------ARELRRlrgnEIAMIFQDPMTALTPVyTIGWQIAEQIRAHrNISKSKAMERVEELLAEV 137
Cdd:PRK13651 79 ekekVLEKLVIQKTrfkkikkIKEIRR----RVGVVFQFAEYQLFEQ-TIEKDIIFGPVSM-GVSKEEAKKRAAKYIELV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 138 NFPnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVS 217
Cdd:PRK13651 153 GLD--ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT-IILVTHDLDNVL 229
|
250 260
....*....|....*....|....*.
gi 639163462 218 ELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
2-243 |
8.75e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 87.21 E-value: 8.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLkvSFRTNDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNAtieGSIRYKGRElVGLPARE 81
Cdd:PRK13636 5 ILKVEEL--NYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKPSS---GRILFDGKP-IDYSRKG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNeIAMIFQDPMTAL--TPVYtigwQIAEQIRAHRNISKSKAMERVEELLAEVNFpnphEAMSRYP-HQLSGGMR 158
Cdd:PRK13636 77 LMKLRES-VGMVFQDPDNQLfsASVY----QDVSFGAVNLKLPEDEVRKRVDNALKRTGI----EHLKDKPtHCLSFGQK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227
|
....*
gi 639163462 239 ELFSD 243
Cdd:PRK13636 228 EVFAE 232
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
27-235 |
8.97e-20 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 85.62 E-value: 8.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 27 FDL--EESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYKGRELVGLPARElrrlrgNEIAMIFQDP--MTALT 102
Cdd:cd03298 17 FDLtfAQGEITAIVGPSGSGKSTLLNLIAGFET-PQS---GRVLINGVDVTAAPPAD------RPVSMLFQENnlFAHLT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 PVYTIGWQIAEQIRAhrnisKSKAMERVEELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTA 182
Cdd:cd03298 87 VEQNVGLGLSPGLKL-----TAEDRQAIEVALARVGLAG---LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639163462 183 LDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-240 |
1.12e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 86.27 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSfrTNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlitDPNATI-EGSIRYKGRELVGLPARE 81
Cdd:COG0396 1 LEIKNLHVS--VEGKEI--LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG---HPKYEVtSGSILLDGEDILELSPDE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lRRLRGneIAMIFQDP--------MTALtpvytigwQIAEQIRAHRNISKSKAMERVEELLAEVNFPNphEAMSRYPHQ- 152
Cdd:COG0396 74 -RARAG--IFLAFQYPveipgvsvSNFL--------RTALNARRGEELSAREFLKLLKEKMKELGLDE--DFLDRYVNEg 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDV-TVQAgILDLVRKLRATHKSAVVfITH-----DMGVvselADRVMVM 226
Cdd:COG0396 141 FSGGEKKRNEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKLRSPDRGILI-ITHyqrilDYIK----PDFVHVL 214
|
250
....*....|....
gi 639163462 227 YAGRVVERGSrAEL 240
Cdd:COG0396 215 VDGRIVKSGG-KEL 227
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
3-244 |
1.38e-19 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 87.98 E-value: 1.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKvsfRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGL--ITdpnatiEGSIRYKGRELVGLPAR 80
Cdd:PRK11650 4 LKLQAVR---KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLerIT------SGEIWIGGRVVNELEPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ElrrlRGneIAMIFQDpmTALTPVYTIGWQIAEQIRaHRNISKSKAMERVEE---------LLAevnfpnpheamsRYPH 151
Cdd:PRK11650 75 D----RD--IAMVFQN--YALYPHMSVRENMAYGLK-IRGMPKAEIEERVAEaarilelepLLD------------RKPR 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRavIAM--ALSCNPALLVADEPTTALD----VTVQAGILDLVRKLRATHksavVFITHDMGVVSELADRVMV 225
Cdd:PRK11650 134 ELSGGQRQR--VAMgrAIVREPAVFLFDEPLSNLDaklrVQMRLEIQRLHRRLKTTS----LYVTHDQVEAMTLADRVVV 207
|
250
....*....|....*....
gi 639163462 226 MYAGRVVERGSRAELFSDP 244
Cdd:PRK11650 208 MNGGVAEQIGTPVEVYEKP 226
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-242 |
1.95e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 88.71 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtnDGlVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNatIEGSIRYK------------ 70
Cdd:TIGR03269 1 IEVKNLTKKF---DG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHvalcekcgyver 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 71 ----GR--------------ELVGLPARELRRLRgNEIAMIFQDPMtALTPVYTIgwqIAEQIRAHRNI--SKSKAMERV 130
Cdd:TIGR03269 75 pskvGEpcpvcggtlepeevDFWNLSDKLRRRIR-KRIAIMLQRTF-ALYGDDTV---LDNVLEALEEIgyEGKEAVGRA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 131 EELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFIT 210
Cdd:TIGR03269 150 VDLIEMVQLSH---RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
|
250 260 270
....*....|....*....|....*....|..
gi 639163462 211 HDMGVVSELADRVMVMYAGRVVERGSRAELFS 242
Cdd:TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-243 |
2.14e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 86.34 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVsllaVMGLITDPNATIEGSIRYKGRELVGLPA-RELRRLRgNEIAMIFQDPM 98
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKST----IMQLLNGLHVPTQGSVRVDDTLITSTSKnKDIKQIR-KKVGLVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 ------TALTPVyTIGWQiaeqiraHRNISKSKAMERVEELLAEVNFPNphEAMSRYPHQLSGGMRQRAVIAMALSCNPA 172
Cdd:PRK13649 96 sqlfeeTVLKDV-AFGPQ-------NFGVSQEEAEALAREKLALVGISE--SLFEKNPFELSGGQMRRVAIAGILAMEPK 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 173 LLVADEPTTALDVTVQAGILDLVRKLratHKSA--VVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13649 166 ILVLDEPTAGLDPKGRKELMTLFKKL---HQSGmtIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-235 |
3.71e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 83.75 E-value: 3.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSFRTNDGLVRA--IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpNATIEGSIRYKGRELvglP 78
Cdd:cd03213 2 VTLSFRNLTVTVKSSPSKSGKqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT--GLGVSGEVLINGRPL---D 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 ARELRRLrgneIAMIFQDPMT--ALTPVYTIgwQIAEQIRahrniskskamerveellaevnfpnpheamsryphQLSGG 156
Cdd:cd03213 77 KRSFRKI----IGYVPQDDILhpTLTVRETL--MFAAKLR-----------------------------------GLSGG 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHD-MGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03213 116 ERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRT-IICSIHQpSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
3-236 |
1.28e-18 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 82.46 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdgLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPnatIEGSIRYKGRELVGLPAREL 82
Cdd:cd03369 7 IEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EA---EEGKIEIDGIDISTIPLEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPM----TALTPVYTIGWQIAEQIRAHRNISKSKAmerveellaevnfpnpheamsryphQLSGGMR 158
Cdd:cd03369 81 RS----SLTIIPQDPTlfsgTIRSNLDPFDEYSDEEIYGALRVSEGGL-------------------------NLSQGQR 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLraTHKSAVVFITHDMGVVSELaDRVMVMYAGRVVERGS 236
Cdd:cd03369 132 QLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE--FTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDH 206
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
3-237 |
1.96e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 81.80 E-value: 1.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSfrtnDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlitDPNATI-EGSIRYKGRELVGLPARE 81
Cdd:cd03217 1 LEIKDLHVS----VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG---HPKYEVtEGEILFKGEDITDLPPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lRRLRGneIAMIFQDPMtALTPVytigwqiaeqirahrniskskameRVEELLAEVNfpnpheamsrypHQLSGGMRQRA 161
Cdd:cd03217 74 -RARLG--IFLAFQYPP-EIPGV------------------------KNADFLRYVN------------EGFSGGEKKRN 113
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSEL-ADRVMVMYAGRVVERGSR 237
Cdd:cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI-ITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
2-231 |
2.24e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 85.37 E-value: 2.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRaIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdPNATiEGSIRYKGREL-VGLPAR 80
Cdd:PRK13549 259 ILEVRNLTAWDPVNPHIKR-VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY--PGRW-EGEIFIDGKPVkIRNPQQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRrlrgNEIAMIFQD-PMTALTPVYTIGWQIA----EQIRAHRNISKSKAMERVEELLAE--VNFPNPHEAMSRyphqL 153
Cdd:PRK13549 335 AIA----QGIAMVPEDrKRDGIVPVMGVGKNITlaalDRFTGGSRIDDAAELKTILESIQRlkVKTASPELAIAR----L 406
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL-VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-240 |
2.95e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 83.32 E-value: 2.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNAtieGSIRykgreLVGLPARE 81
Cdd:PRK13537 7 PIDFRNVEKRY--GDKLV--VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPDA---GSIS-----LCGEPVPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRGNEIAMIFQdpMTALTPVYTIgwqiAEQIRA---HRNISKSKAMERVEELLAEVNFPNPHEAMSRyphQLSGGMR 158
Cdd:PRK13537 74 RARHARQRVGVVPQ--FDNLDPDFTV----RENLLVfgrYFGLSAAAARALVPPLLEFAKLENKADAKVG---ELSGGMK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223
|
..
gi 639163462 239 EL 240
Cdd:PRK13537 224 AL 225
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
13-236 |
3.24e-18 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 82.05 E-value: 3.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 13 RTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRelVGLPArelrrlrgnEIAM 92
Cdd:COG1134 33 RTRREEFWALKDVSFEVERGESVGIIGRNGAGKS-TLLKLIAGILEPT---SGRVEVNGR--VSALL---------ELGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 93 IFQDPMTALTPVYTIGwqiaeqiRAHrNISKSKAMERVEELL--AEV-NF---PnpheaMSRYphqlSGGMRQRAVIAMA 166
Cdd:COG1134 98 GFHPELTGRENIYLNG-------RLL-GLSRKEIDEKFDEIVefAELgDFidqP-----VKTY----SSGMRARLAFAVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 167 LSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:COG1134 161 TAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRT-VIFVSHSMGAVRRLCDRAIWLEKGRLVMDGD 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
2-231 |
3.91e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.49 E-value: 3.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRaIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdPNAtIEGSIRYKGREL-VGLPAR 80
Cdd:TIGR02633 257 ILEARNLTCWDVINPHRKR-VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY--PGK-FEGNVFINGKPVdIRNPAQ 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrgnEIAMIFQD-PMTALTPVYTIGWQIA-EQIRAHRNISKSKAMERVEELLAE-----VNFPNPHEAMSRyphqL 153
Cdd:TIGR02633 333 AIRA----GIAMVPEDrKRHGIVPILGVGKNITlSVLKSFCFKMRIDAAAELQIIGSAiqrlkVKTASPFLPIGR----L 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL-AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
10-236 |
1.09e-17 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 80.23 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARELRRLrgne 89
Cdd:cd03244 8 VSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDISKIGLHDLRSR---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPMT-------ALTP--VYTIG--WQIAEQIRAHRNISKSKAMERVEELLAEVNFpnpheamsryphqlSGGMR 158
Cdd:cd03244 80 ISIIPQDPVLfsgtirsNLDPfgEYSDEelWQALERVGLKEFVESLPGGLDTVVEEGGENL--------------SVGQR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRklRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGS 236
Cdd:cd03244 146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
25-245 |
1.44e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 80.36 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLLAVM-GLITDpnatiEGSIRYKGRELVGLPARELRRLRGneiAMIFQDPMTALTP 103
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKS-TLLARMaGLLPG-----SGSIQFAGQPLEAWSAAELARHRA---YLSQQQTPPFAMP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 VytigWQ-IAEQIRAHRNISKS-KAMERVEELLAEVNFpnpheaMSRYPHQLSGGMRQRAVIAMAL-----SCNPA--LL 174
Cdd:PRK03695 86 V----FQyLTLHQPDKTRTEAVaSALNEVAEALGLDDK------LGRSVNQLSGGEWQRVRLAAVVlqvwpDINPAgqLL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 175 VADEPTTALDVTvQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPR 245
Cdd:PRK03695 156 LLDEPMNSLDVA-QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-231 |
4.50e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 81.64 E-value: 4.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLkvsfrTNDGLVRaidgVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRE-------- 73
Cdd:PRK15439 268 VLTVEDL-----TGEGFRN----ISLEVRAGEILGLAGVVGAGRTELAETLYGL----RPARGGRIMLNGKEinalstaq 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 74 -----LVGLParELRRLRGneiamIFQD-PMTALTPVYTIG----WQiaeqirahRNISKSKAMERVEELLAeVNFPNPH 143
Cdd:PRK15439 335 rlargLVYLP--EDRQSSG-----LYLDaPLAWNVCALTHNrrgfWI--------KPARENAVLERYRRALN-IKFNHAE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 144 EAMSRyphqLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRV 223
Cdd:PRK15439 399 QAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI-AAQNVAVLFISSDLEEIEQMADRV 473
|
....*...
gi 639163462 224 MVMYAGRV 231
Cdd:PRK15439 474 LVMHQGEI 481
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
27-240 |
5.05e-17 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 78.35 E-value: 5.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 27 FDLEESEILGVVGESGSGKTVSLLAVMGLI--TDPNATIEGSIRYKGRELVG-LPARelrrlrgNEIAMIFqdPMTALTP 103
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIppAKGTVKVAGASPGKGWRHIGyVPQR-------HEFAWDF--PISVAHT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 VYT-----IGWQIAEQIRAHRNISKskAMERVeellaevnfpNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADE 178
Cdd:TIGR03771 72 VMSgrtghIGWLRRPCVADFAAVRD--ALRRV----------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 179 PTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVmVMYAGRVVERGSRAEL 240
Cdd:TIGR03771 140 PFTGLDMPTQELLTELFIEL-AGAGTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQL 199
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
25-244 |
6.30e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 80.30 E-value: 6.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGREL------VGLPArELRRlrgneIAMIFQDpm 98
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKT-SLINAISGLTRPQ---KGRIVLNGRVLfdaekgICLPP-EKRR-----IGYVFQD-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TALTPVYTIG----WQIAEQIRAHRNisKSKAMERVEELLaevnfpnpheamSRYPHQLSGGMRQRAVIAMALSCNPALL 174
Cdd:PRK11144 85 ARLFPHYKVRgnlrYGMAKSMVAQFD--KIVALLGIEPLL------------DRYPGSLSGGEKQRVAIGRALLTAPELL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 175 VADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
27-231 |
1.98e-16 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 76.44 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 27 FDL--EESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARElrrlrgNEIAMIFQDpmTALTPV 104
Cdd:TIGR01277 17 FDLnvADGEIVAIMGPSGAGKSTLLNLIAGFIE----PASGSIKVNDQSHTGLAPYQ------RPVSMLFQE--NNLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 105 YTIGWQIAEQIRAHRNISkSKAMERVEELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALD 184
Cdd:TIGR01277 85 LTVRQNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIAD---YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639163462 185 VTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-240 |
2.10e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.43 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MIlSVRDlkVSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPAR 80
Cdd:COG4604 1 MI-EIKN--VSKRYGGKVV--LDDVSLTIPKGGITALIGPNGAGKS-TLLSMISRLLPPDS---GEVLVDGLDVATTPSR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 EL-RRLrgneiAMIFQDPMTA--LTpvytigwqiaeqirahrniskskamerVEELLAEVNFPnpH-------------- 143
Cdd:COG4604 72 ELaKRL-----AILRQENHINsrLT---------------------------VRELVAFGRFP--Yskgrltaedreiid 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 144 EAMS---------RYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMG 214
Cdd:COG4604 118 EAIAyldledladRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDIN 197
|
250 260
....*....|....*....|....*.
gi 639163462 215 VVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:COG4604 198 FASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-243 |
2.39e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.85 E-value: 2.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIE-GSIRYKGRElvglPARELRRLRgNEIAMIFQDPM 98
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTvGDIVVSSTS----KQKEIKPVR-KKVGVVFQFPE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TALTPvYTIGWQIAEQIRaHRNISKSKAMERVEELLAEVNFPNphEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADE 178
Cdd:PRK13643 95 SQLFE-ETVLKDVAFGPQ-NFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 179 PTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK13643 171 PTAGLDPKARIEMMQLFESIHQSGQT-VVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
10-242 |
2.44e-16 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 79.31 E-value: 2.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELvglpARELRRLRGNE 89
Cdd:TIGR01842 322 VTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKS-TLARLIVGIWPPTS---GSVRLDGADL----KQWDRETFGKH 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDpmtaltpVYTIGWQIAEQI-RAHRNISKSKAMERVEelLAEVnfpnpHEAMSRYPH-----------QLSGGM 157
Cdd:TIGR01842 394 IGYLPQD-------VELFPGTVAENIaRFGENADPEKIIEAAK--LAGV-----HELILRLPDgydtvigpggaTLSGGQ 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVsELADRVMVMYAGRVVERGSR 237
Cdd:TIGR01842 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGER 537
|
....*
gi 639163462 238 AELFS 242
Cdd:TIGR01842 538 DEVLA 542
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
25-244 |
2.95e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 79.12 E-value: 2.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdpnatIEGSIRYKGRELVGLPARELRRlrgnEIAMIFQDPM----T 99
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKT-SLLnALLGFLP-----YQGSLKINGIELRELDPESWRK----HLSWVGQNPQlphgT 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPVyTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPnPHEAMSRyphqLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:PRK11174 439 LRDNV-LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP-IGDQAAG----LSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 180 TTALDVTVQAGILDLVRKlrATHKSAVVFITHDmgvVSELA--DRVMVMYAGRVVERGSRAELFSDP 244
Cdd:PRK11174 513 TASLDAHSEQLVMQALNA--ASRRQTTLMVTHQ---LEDLAqwDQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
3-240 |
3.39e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 78.91 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLvrAIDGVSFDLEESEILGVVGESGSGKtvSLLAvmGLITDPNATIEGSIRYKGrelVGLPAREL 82
Cdd:PRK11176 342 IEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGK--STIA--NLLTRFYDIDEGEILLDG---HDLRDYTL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRgNEIAMIFQDpmtaltpVYTIGWQIAEQIRAHRNISKSKA-MERVEELLAEVNFpnpheaMSRYPH---------- 151
Cdd:PRK11176 413 ASLR-NQVALVSQN-------VHLFNDTIANNIAYARTEQYSREqIEEAARMAYAMDF------INKMDNgldtvigeng 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 -QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGI---LDLVRKLRathksAVVFITHDMGVVsELADRVMVMY 227
Cdd:PRK11176 479 vLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIqaaLDELQKNR-----TSLVIAHRLSTI-EKADEILVVE 552
|
250
....*....|...
gi 639163462 228 AGRVVERGSRAEL 240
Cdd:PRK11176 553 DGEIVERGTHAEL 565
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
11-235 |
8.86e-16 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 74.88 E-value: 8.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 11 SFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGReLVGLParelrrlrgnEI 90
Cdd:cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKS-TLLRLLAGIYPPD---SGTVTVRGR-VSSLL----------GL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 91 AMIFQDPMTALTPVYTIGwqiaeqirAHRNISKSKAMERVEELL--AEV-NFpnPHEAMSRYphqlSGGMRQRAVIAMAL 167
Cdd:cd03220 92 GGGFNPELTGRENIYLNG--------RLLGLSRKEIDEKIDEIIefSELgDF--IDLPVKTY----SSGMKARLAFAIAT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 168 SCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERG 235
Cdd:cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT-VILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
3-241 |
9.79e-16 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 77.45 E-value: 9.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLVRAIdgvSFDLEESEILGVVGESGSGKtvSLLA--VMGLITdpnaTIEGSIRYKGRELVGLPAR 80
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQNI---NLSVPSRGFVALVGHTGSGK--STLAslLMGYYP----LTEGEIRLDGRPLSSLSHS 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRrlrgNEIAMIFQDPMTALTPVY---TIGwqiaeqirahRNISKSK---AMERVEelLAEVNFPNPHEAMSRYPHQ-- 152
Cdd:PRK10790 412 VLR----QGVAMVQQDPVVLADTFLanvTLG----------RDISEEQvwqALETVQ--LAELARSLPDGLYTPLGEQgn 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 -LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAthKSAVVFITHDMGVVSElADRVMVMYAGRV 231
Cdd:PRK10790 476 nLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVE-ADTILVLHRGQA 552
|
250
....*....|
gi 639163462 232 VERGSRAELF 241
Cdd:PRK10790 553 VEQGTHQQLL 562
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
2-232 |
1.02e-15 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 75.00 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNATIEGSIRYKGRELVglpare 81
Cdd:cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQPRK------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lRRLRGNEIAMIFQDpmTALTPVYTI--GWQIAEQIRAHRNISKSKAMERVE-ELLAEVNfpNPHEAMSRYPhQLSGGMR 158
Cdd:cd03234 76 -PDQFQKCVAYVRQD--DILLPGLTVreTLTYTAILRLPRKSSDAIRKKRVEdVLLRDLA--LTRIGGNLVK-GISGGER 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGV-VSELADRVMVMYAGRVV 232
Cdd:cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL-ARRNRIVILTIHQPRSdLFRLFDRILLLSSGEIV 223
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
3-242 |
1.05e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 75.69 E-value: 1.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEgsirykgreLVGLPARel 82
Cdd:PRK15056 7 IVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS---------ILGQPTR-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNEIAMIFQDPMTALT-PVYT-----------IGWQiaeqirahrNISKSKAMERVEELLAEVNfpnpheaMSRYP 150
Cdd:PRK15056 73 QALQKNLVAYVPQSEEVDWSfPVLVedvvmmgryghMGWL---------RRAKKRDRQIVTAALARVD-------MVEFR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 H----QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVmVM 226
Cdd:PRK15056 137 HrqigELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV-STHNLGSVTEFCDYT-VM 214
|
250
....*....|....*.
gi 639163462 227 YAGRVVERGSRAELFS 242
Cdd:PRK15056 215 VKGTVLASGPTETTFT 230
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
24-244 |
1.24e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.45 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 24 GVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRlrgnEIAMIFQDPMTaltp 103
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKS-TVAALLQNLYQPTG---GQVLLDGVPLVQYDHHYLHR----QVALVGQEPVL---- 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 vytigwqIAEQIRahRNISKSKAMERVEELLAEVNFPNPHEAMSRYPH-----------QLSGGMRQRAVIAMALSCNPA 172
Cdd:TIGR00958 567 -------FSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNgydtevgekgsQLSGGQKQRIAIARALVRKPR 637
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 173 LLVADEPTTALDVTVQAgildLVRKLRATHKSAVVFITHDMGVVsELADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:TIGR00958 638 VLILDEATSALDAECEQ----LLQESRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
2-248 |
1.79e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.05 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDpNATIEGSIRYKGREL--VGLPA 79
Cdd:PRK09984 4 IIRVEKLAKTFNQH----QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG-DKSAGSHIELLGRTVqrEGRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRGnEIAMIFQ-----DPMTALTPVYtIG-------WQIAeqIRAHRNISKSKAMERVEELlaevnfpnpheAMS 147
Cdd:PRK09984 79 RDIRKSRA-NTGYIFQqfnlvNRLSVLENVL-IGalgstpfWRTC--FSWFTREQKQRALQALTRV-----------GMV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RYPHQ----LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRV 223
Cdd:PRK09984 144 HFAHQrvstLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223
|
250 260
....*....|....*....|....*..
gi 639163462 224 MVMYAGRVVERGSrAELFSDPR--HPY 248
Cdd:PRK09984 224 VALRQGHVFYDGS-SQQFDNERfdHLY 249
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-231 |
2.28e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.20 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTvsllAVMGLITDPNATIEGSIRYKGRELV------GLPA-----RELRRLRGNEI 90
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRT----ELMKVLYGALPRTSGYVTLDGHEVVtrspqdGLANgivyiSEDRKRDGLVL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 91 AMIFQDPM--TALTpvytigwqiaEQIRAHRNISKSKAMERVEELLAEVNFPNPheAMSRYPHQLSGGMRQRAVIAMALS 168
Cdd:PRK10762 344 GMSVKENMslTALR----------YFSRAGGSLKHADEQQAVSDFIRLFNIKTP--SMEQAIGLLSGGNQQKVAIARGLM 411
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 169 CNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS-IILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
17-240 |
2.58e-15 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 75.54 E-value: 2.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMglITDPNATIEG-------SIRYKGRELVGL--PARELRRlrg 87
Cdd:NF000106 24 GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAH--V*GPDAGRRPwrf*twcANRRALRRTIG*hrPVR*GRR--- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 neiamifqDPMTALTPVYTIGWQIaeqirahrNISKSKAMERVEELLAEVNFPnphEAMSRYPHQLSGGMRQRAVIAMAL 167
Cdd:NF000106 99 --------ESFSGRENLYMIGR*L--------DLSRKDARARADELLERFSLT---EAAGRAAAKYSGGMRRRLDLAASM 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 168 SCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:NF000106 160 IGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM-VRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-251 |
2.83e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 74.43 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITD--PNATIEGSIRYKGRELVG--L 77
Cdd:PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKS-TILRCFNRLNDliPGFRVEGKVTFHGKNLYApdV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 78 PARELRRlrgnEIAMIFQDPMTALTPVYTigwQIAEQIRAhrNISKSKAMERVEE------LLAEVNFPNPHEAMSryph 151
Cdd:PRK14243 85 DPVEVRR----RIGMVFQKPNPFPKSIYD---NIAYGARI--NGYKGDMDELVERslrqaaLWDEVKDKLKQSGLS---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 qLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELADrVMVMYAGRV 231
Cdd:PRK14243 152 -LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSD-MTAFFNVEL 227
|
250 260 270
....*....|....*....|....*....|
gi 639163462 232 VERGSR----------AELFSDPRHPYTRA 251
Cdd:PRK14243 228 TEGGGRygylvefdrtEKIFNSPQQQATRD 257
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
2-269 |
3.40e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 74.03 E-value: 3.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDlkVSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK11831 7 LVDMRG--VSFTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKT-TLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgNEIAMIFQDP--MTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEEllaeVNFPNPHEAMsryPHQLSGGMRQ 159
Cdd:PRK11831 79 LYTVR-KRMSMLFQSGalFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEA----VGLRGAAKLM---PSELSGGMAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAE 239
Cdd:PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230
|
250 260 270
....*....|....*....|....*....|
gi 639163462 240 LFSDPrHPYTRALLGSIPplTGEKPRRLPA 269
Cdd:PRK11831 231 LQANP-DPRVRQFLDGIA--DGPVPFRYPA 257
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
10-240 |
5.93e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 75.24 E-value: 5.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGlvRAI-DGVSFDLEESEILGVVGESGSGK-TVSLLaVMGLItDPNatiEGSIRYKGRELVGLPARELRRlrg 87
Cdd:COG5265 363 VSFGYDPE--RPIlKGVSFEVPAGKTVAIVGPSGAGKsTLARL-LFRFY-DVT---SGRILIDGQDIRDVTQASLRA--- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 88 nEIAMIFQDpmTAL---TpvytigwqIAEQIRAHR-NISkskaMERVEEL--LAEVnfpnpHEAMSRYPHQ--------- 152
Cdd:COG5265 433 -AIGIVPQD--TVLfndT--------IAYNIAYGRpDAS----EEEVEAAarAAQI-----HDFIESLPDGydtrvgerg 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 --LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVvfITHDMGVVSElADRVMVMYAGR 230
Cdd:COG5265 493 lkLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLV--IAHRLSTIVD-ADEILVLEAGR 569
|
250
....*....|
gi 639163462 231 VVERGSRAEL 240
Cdd:COG5265 570 IVERGTHAEL 579
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
22-232 |
9.25e-15 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 71.52 E-value: 9.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNATIEGSIRYKGrelvgLPARELRRLRGNEIAMIFQDP--MT 99
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCS-TLLKALANRTEGNVSVEGDIHYNG-----IPYKEFAEKYPGEIIYVSEEDvhFP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPVYTIgwQIAEQIRAHRNISKskamerveellaevnfpnpheamsryphqLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:cd03233 97 TLTVRETL--DFALRCKGNEFVRG-----------------------------ISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 180 TTALDvtvQAGILDLVRKLR----ATHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:cd03233 146 TRGLD---SSTALEILKCIRtmadVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
25-233 |
1.72e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 73.67 E-value: 1.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGliTDPNAtiEGSIRYKGRELVglPARELRRLRgNEIAMIFQDPM-TALTP 103
Cdd:PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRA--GGEIRLNGKDIS--PRSPLDAVK-KGMAYITESRRdNGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 VYTIgwqiAEQIRAHRNISKSK---AM----ERVEELLAEvnfpNPHEAMSRYPH-------QLSGGMRQRAVIAMALSC 169
Cdd:PRK09700 355 NFSI----AQNMAISRSLKDGGykgAMglfhEVDEQRTAE----NQRELLALKCHsvnqnitELSGGNQQKVLISKWLCC 426
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 170 NPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:PRK09700 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
2-224 |
1.98e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 71.68 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVG-LPAR 80
Cdd:PRK09544 4 LVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV----APDEGVIKRNGKLRIGyVPQK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 elrrlrgneiamIFQDPMTALTpvytigwqIAEQIRAHRNISKSK---AMERVEEllaevnfpnphEAMSRYPHQ-LSGG 156
Cdd:PRK09544 76 ------------LYLDTTLPLT--------VNRFLRLRPGTKKEDilpALKRVQA-----------GHLIDAPMQkLSGG 124
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVM 224
Cdd:PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
33-240 |
2.07e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 71.74 E-value: 2.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 33 EILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRlrgnEIAMIFQ-----DPMTALTPVyTI 107
Cdd:PRK10575 38 KVTGLIGHNGSGKS-TLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFAR----KVAYLPQqlpaaEGMTVRELV-AI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 108 G---WqiaeqiraHRNISKSKA--MERVEELLAEVNF-PNPHeamsRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:PRK10575 109 GrypW--------HGALGRFGAadREKVEEAISLVGLkPLAH----RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
25-255 |
2.88e-14 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 72.37 E-value: 2.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGL--ITDPNATIeGSIRYKGRElvglPARelrrlRGneIAMIFQDpmTALT 102
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLedITSGDLFI-GEKRMNDVP----PAE-----RG--VGMVFQS--YALY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 P---VY---TIGWQIAeqirahrNISKSKAMERVEELlAEVnFPNPHeAMSRYPHQLSGGMRQRAVIAMALSCNPALLVA 176
Cdd:PRK11000 88 PhlsVAenmSFGLKLA-------GAKKEEINQRVNQV-AEV-LQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 177 DEPTTALD----VTVQAGILDLVRKLRAThksaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDPRHPYTRAL 252
Cdd:PRK11000 158 DEPLSNLDaalrVQMRIEISRLHKRLGRT----MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGF 233
|
...
gi 639163462 253 LGS 255
Cdd:PRK11000 234 IGS 236
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
17-243 |
3.53e-14 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 70.68 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlitDPNATiEGSIRYKGRELVGLPARELRRlrgNEIAMIFQ- 95
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRAT-SGRIVFDGKDITDWQTAKIMR---EAVAIVPEg 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 96 ----DPMTALTPVYTIGWQIAEQIRAHRniskskaMERVEELlaevnFPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNP 171
Cdd:PRK11614 89 rrvfSRMTVEENLAMGGFFAERDQFQER-------IKWVYEL-----FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 172 ALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
19-233 |
3.62e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 72.64 E-value: 3.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARElrrLRGNEIAMIFQDpm 98
Cdd:PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKS-TLLKILSGNYQPDA---GSILIDGQEMRFASTTA---ALAAGVAIIYQE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 TALTPVYTigwqIAEQIR----AHRN--ISKSKAMERVEELLAEVNFP-NPHEAMSRyphqLSGGMRQRAVIAMALSCNP 171
Cdd:PRK11288 88 LHLVPEMT----VAENLYlgqlPHKGgiVNRRLLNYEAREQLEHLGVDiDPDTPLKY----LSIGQRQMVEIAKALARNA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 172 ALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGR-VILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
3-235 |
4.19e-14 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 69.26 E-value: 4.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLlavmGLIT---DPNatiEGSIrykgrELVGLPA 79
Cdd:cd03247 1 LSINNVSFSYPEQEQQV--LKNLSLELKQGEKIALLGRSGSGKSTLL----QLLTgdlKPQ---QGEI-----TLDGVPV 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRGNEIAMIFQDPMTALTPVYTigwqiaeqirahrNISKskamerveellaevnfpnpheamsryphQLSGGMRQ 159
Cdd:cd03247 67 SDLEKALSSLISVLNQRPYLFDTTLRN-------------NLGR----------------------------RFSGGERQ 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVrkLRATHKSAVVFITHDM-GVvsELADRVMVMYAGRVVERG 235
Cdd:cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI--FEVLKDKTLIWITHHLtGI--EHMDKILFLENGKIIMQG 178
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
20-243 |
6.02e-14 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 70.31 E-value: 6.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPARElRRLRG----NEIAMIFQ 95
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV----PRDAGNIIIDDEDISLLPLHA-RARRGigylPQEASIFR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 96 -----DPMTALTpvytigwqiaeQIRahRNISKSKAMERVEELLAEVNFPNPHEAMSRyphQLSGGMRQRAVIAMALSCN 170
Cdd:PRK10895 92 rlsvyDNLMAVL-----------QIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQ---SLSGGERRRVEIARALAAN 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 171 PALLVADEPTTALDVTVQAGILDLVRKLRaTHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
21-226 |
1.16e-13 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 68.41 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGL-PARelrrlrgneIAMIFQDPMT 99
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVL----RPTSGTVRRAGGARVAYvPQR---------SEVPDSLPLT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALTPVyTIG-WQIAEQIRAHRNISK---SKAMERV--EELLAevnfpnpheamsRYPHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:NF040873 74 VRDLV-AMGrWARRGLWRRLTRDDRaavDDALERVglADLAG------------RQLGELSGGQRQRALLAQGLAQEADL 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITHDMGVVSeLADRVMVM 226
Cdd:NF040873 141 LLLDEPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELVR-RADPCVLL 191
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
6-231 |
1.88e-13 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 68.65 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 6 RDLKVSFRTN-DGLVraIDGVSFDLEESEILGVVGESGSGKT--VSLLAVMGLITDpnatieGSIRYKGRELVGLPAREL 82
Cdd:cd03248 15 QNVTFAYPTRpDTLV--LQDVSFTLHPGEVTALVGPSGSGKStvVALLENFYQPQG------GQVLLDGKPISQYEHKYL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRlrgnEIAMIFQDPMTaltpvytigwqIAEQIRahRNIS---KSKAMERVEELLAEVNfpnPHEAMSRYPH-------- 151
Cdd:cd03248 87 HS----KVSLVGQEPVL-----------FARSLQ--DNIAyglQSCSFECVKEAAQKAH---AHSFISELASgydtevge 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 ---QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsaVVFITHDMGVVsELADRVMVMYA 228
Cdd:cd03248 147 kgsQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRT--VLVIAHRLSTV-ERADQILVLDG 223
|
...
gi 639163462 229 GRV 231
Cdd:cd03248 224 GRI 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
23-212 |
2.48e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.09 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 23 DGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLITdPNatiEGSIRYKgrelvglparelrrlRGNEIAMIFQDP---- 97
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKS-TLLKILaGELE-PD---SGEVSIP---------------KGLRIGYLPQEPpldd 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 98 --------MTALTPVYTIGWQIAE-----------QIRAHRNISKSKAME------RVEELLAEVNFpnPHEAMSRYPHQ 152
Cdd:COG0488 75 dltvldtvLDGDAELRALEAELEEleaklaepdedLERLAELQEEFEALGgweaeaRAEEILSGLGF--PEEDLDRPVSE 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVtvqAGILDLVRKLRaTHKSAVVFITHD 212
Cdd:COG0488 153 LSGGWRRRVALARALLSEPDLLLLDEPTNHLDL---ESIEWLEEFLK-NYPGTVLVVSHD 208
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
13-231 |
5.04e-13 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 67.78 E-value: 5.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 13 RTNDGLVRAIDGVSFDLEESEIL-------------GVVGESGSGKTVSLLAVMGLITdPNAtiegsirykGRELVG-LP 78
Cdd:PRK11247 6 RLNQGTPLLLNAVSKRYGERTVLnqldlhipagqfvAVVGRSGCGKSTLLRLLAGLET-PSA---------GELLAGtAP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 79 ARELRrlrgNEIAMIFQDpmTALTPvytigWQiaeqiRAHRNIS---KSKAMERVEELLAEVNFPnphEAMSRYPHQLSG 155
Cdd:PRK11247 76 LAEAR----EDTRLMFQD--ARLLP-----WK-----KVIDNVGlglKGQWRDAALQALAAVGLA---DRANEWPAALSG 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDmgvVSE---LADRVMVMYAGRV 231
Cdd:PRK11247 137 GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD---VSEavaMADRVLLIEEGKI 212
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
22-240 |
6.33e-13 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 68.32 E-value: 6.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLiTDPNAtieGSIRYKGrelVGLPARElrRLRGNEIAMIFQdpMTAL 101
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-TSPDA---GKITVLG---VPVPARA--RLARARIGVVPQ--FDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRAHRniSKSKAMERVEELLAEvnFPNPHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:PRK13536 126 DLEFTVRENLLVFGRYFG--MSTREIEAVIPSLLE--FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGSRAEL 240
Cdd:PRK13536 202 GLDPHARHLIWERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-226 |
6.33e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 67.05 E-value: 6.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDlkVSFRTNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRELVGLPAR 80
Cdd:PRK10247 6 PLLQLQN--VGYLAGDAKI--LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPT---SGTLLFEGEDISTLKPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRlrgnEIAMIFQDPMTALTPVY---TIGWQIaeqirahRNisKSKAMERVEELLAEVNFPNphEAMSRYPHQLSGGM 157
Cdd:PRK10247 78 IYRQ----QVSYCAQTPTLFGDTVYdnlIFPWQI-------RN--QQPDPAIFLDDLERFALPD--TILTKNIAELSGGE 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 158 RQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVM 226
Cdd:PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
21-244 |
9.45e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 68.59 E-value: 9.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTvSLLAvmgLITDPNATIEGSIRYKGRELVGLPARELRRlrgnEIAMIFQDPmta 100
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKS-TLLS---LIQRHFDVSEGDIRFHDIPLTKLQLDSWRS----RLAVVSQTP--- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 ltpvYTIGWQIAEQIRAHRNISKSKAMERVEELlaevnfPNPHEAMSRYPH-----------QLSGGMRQRAVIAMALSC 169
Cdd:PRK10789 399 ----FLFSDTVANNIALGRPDATQQEIEHVARL------ASVHDDILRLPQgydtevgergvMLSGGQKQRISIARALLL 468
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 170 NPALLVADEPTTALDVTVQAGILDLVRKLRatHKSAVVFITHDMGVVSElADRVMVMYAGRVVERGSRAELFSDP 244
Cdd:PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
17-243 |
9.63e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 68.66 E-value: 9.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 17 GLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARELRRLrgnEIAMIFQ- 95
Cdd:PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKS-TLMKVLSGIHEPTK---GTITINNINYNKLDHKLAAQL---GIGIIYQe 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 96 ----DPMTALTPVYtIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNP 171
Cdd:PRK09700 89 lsviDELTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL---KVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 172 ALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSD 243
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
101-242 |
9.77e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 66.93 E-value: 9.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 LTPVYTIGWQIAEQIRAHrnisKSKAMERVEELLAEvNFPNPHE-------AMSRYPHQ--------------------- 152
Cdd:PRK10253 57 MTPAHGHVWLDGEHIQHY----ASKEVARRIGLLAQ-NATTPGDitvqelvARGRYPHQplftrwrkedeeavtkamqat 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 ------------LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELA 220
Cdd:PRK10253 132 githladqsvdtLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYA 211
|
170 180
....*....|....*....|..
gi 639163462 221 DRVMVMYAGRVVERGSRAELFS 242
Cdd:PRK10253 212 SHLIALREGKIVAQGAPKEIVT 233
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
19-229 |
1.78e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 67.72 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRElvglparelRRLRGNE------IAM 92
Cdd:PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKS-TMMKVLTGIYTRDA---GSILYLGKE---------VTFNGPKssqeagIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 93 IFQDpmTALTPVYTigwqIAEQI---RAHRN----ISKSKAMERVEELLAEVNFP-NPHEAMSryphQLSGGMRQRAVIA 164
Cdd:PRK10762 84 IHQE--LNLIPQLT----IAENIflgREFVNrfgrIDWKKMYAEADKLLARLNLRfSSDKLVG----ELSIGEQQMVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 165 MALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
10-240 |
3.82e-12 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 67.11 E-value: 3.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARELRRlrgnE 89
Cdd:PTZ00243 1314 VQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE----VCGGEIRVNGREIGAYGLRELRR----Q 1385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQDPM-------TALTPVYTIG----WQIAEQI-RAHRNISKSKAME-RVEellaevnfpnphEAMSRYphqlSGG 156
Cdd:PTZ00243 1386 FSMIPQDPVlfdgtvrQNVDPFLEASsaevWAALELVgLRERVASESEGIDsRVL------------EGGSNY----SVG 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMA-LSCNPALLVADEPTTALDVTvqagiLDlvRKLRATHKSA-----VVFITHDMGVVSELaDRVMVMYAGR 230
Cdd:PTZ00243 1450 QRQLMCMARAlLKKGSGFILMDEATANIDPA-----LD--RQIQATVMSAfsaytVITIAHRLHTVAQY-DKIIVMDHGA 1521
|
250
....*....|
gi 639163462 231 VVERGSRAEL 240
Cdd:PTZ00243 1522 VAEMGSPREL 1531
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
22-238 |
5.12e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.44 E-value: 5.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATieGSIRYKGRElvglPARELRRLRGneiaMIFQDPMtaL 101
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFT--GTILANNRK----PTKQILKRTG----FVTQDDI--L 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQI--AEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAM--SRYPHQLSGGMRQRAVIAMALSCNPALLVAD 177
Cdd:PLN03211 152 YPHLTVRETLvfCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIigNSFIRGISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639163462 178 EPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRV--VERGSRA 238
Cdd:PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRClfFGKGSDA 294
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-240 |
5.40e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 66.39 E-value: 5.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDlkVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLavmGLIT---DPNatiEGSIRYKGRELVGLPA 79
Cdd:PRK11160 339 LTLNN--VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS-TLL---QLLTrawDPQ---QGEILLNGQPIADYSE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLrgneiamifqdpMTALTP-VYTIgwqiAEQIRAHRNISKSKAM-ERVEELLAEVNFPNPHEAMS---------- 147
Cdd:PRK11160 410 AALRQA------------ISVVSQrVHLF----SATLRDNLLLAAPNASdEALIEVLQQVGLEKLLEDDKglnawlgegg 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 148 RyphQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSaVVFITHDMGVVSELaDRVMVMY 227
Cdd:PRK11160 474 R---QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKT-VLMITHRLTGLEQF-DRICVMD 547
|
250
....*....|...
gi 639163462 228 AGRVVERGSRAEL 240
Cdd:PRK11160 548 NGQIIEQGTHQEL 560
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-212 |
6.06e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 66.23 E-value: 6.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFrtnDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPnatIEGSIRYKGRELVGLPAREL 82
Cdd:TIGR02868 335 LELRDLSAGY---PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL-DP---LQGEVTLDGVPVSSLDQDEV 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLrgneIAMIFQDPmtaltpvYTIGWQIAEQIRAHRnisKSKAMERVEELLAEVNFPNPHEAMsryPH----------- 151
Cdd:TIGR02868 408 RRR----VSVCAQDA-------HLFDTTVRENLRLAR---PDATDEELWAALERVGLADWLRAL---PDgldtvlgegga 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKlrATHKSAVVFITHD 212
Cdd:TIGR02868 471 RLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA--ALSGRTVVLITHH 529
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
26-254 |
9.13e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 63.83 E-value: 9.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 26 SFDLEESEILGVVGESGSGKTvSLLAvmgLITDPNATIEGSIRYKGRELVGLPARelRRlrgnEIAMIFQDpmTALTPVY 105
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKS-TLLN---LIAGFLTPASGSLTLNGQDHTTTPPS--RR----PVSMLFQE--NNLFSHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 106 TIGWQIAEQIraHRNISKSKAM-ERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALD 184
Cdd:PRK10771 87 TVAQNIGLGL--NPGLKLNAAQrEKLHAIARQMGI---EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 185 VTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSdpRHPYTRALLG 254
Cdd:PRK10771 162 PALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS--GKASASALLG 229
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
149-226 |
1.12e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 61.70 E-value: 1.12e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 149 YPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDV-TVQAgildLVRKLRaTHKSAVVFITHDMGVVSELADRVMVM 226
Cdd:cd03221 67 YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLeSIEA----LEEALK-EYPGTVILVSHDRYFLDQVATKIIEL 140
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-236 |
2.10e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.03 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNATIegsirykgreLVGlpARELRrlrgNEIAMIFQDpmTA 100
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV----------LVG--GKDIE----TNLDAVRQS--LG 1006
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 LTPVYTIGWQ---IAEQIRAHRNI---SKSKAMERVEELLAEVNFpnpHEAMSRYPHQLSGGMRQRAVIAMALSCNPALL 174
Cdd:TIGR01257 1007 MCPQHNILFHhltVAEHILFYAQLkgrSWEEAQLEMEAMLEDTGL---HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639163462 175 VADEPTTALDVTVQAGILDLVRKLRATHksAVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYRSGR--TIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
4-257 |
2.47e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 64.61 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 4 SVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdpnATIEGSIRYKGRELVGLPARELR 83
Cdd:PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV----ELEKGRIMIDDCDVAKFGLTDLR 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLrgneIAMIFQDPMTALTpvyTIGWQIaEQIRAHRNISKSKAMERVEelLAEVNFPNP---HEAMSRYPHQLSGGMRQR 160
Cdd:PLN03232 1310 RV----LSIIPQSPVLFSG---TVRFNI-DPFSEHNDADLWEALERAH--IKDVIDRNPfglDAEVSEGGENFSVGQRQL 1379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILdlvRKLRATHKS-AVVFITHDMGVVSElADRVMVMYAGRVVERGSRAE 239
Cdd:PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQ---RTIREEFKScTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQE 1455
|
250
....*....|....*...
gi 639163462 240 LFSDPRHPYTRALLGSIP 257
Cdd:PLN03232 1456 LLSRDTSAFFRMVHSTGP 1473
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
2-246 |
5.18e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 62.15 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNdglvRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDP----NATIEGSIRYKGRELVGL 77
Cdd:PRK13547 1 MLTADHLHVARRHR----AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprGARVTGDVTLNGEPLAAI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 78 PARELRRLRG-----NEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISkSKAMERV--EELLAevnfpnpheamsRYP 150
Cdd:PRK13547 77 DAPRLARLRAvlpqaAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIA-WQALALAgaTALVG------------RDV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 HQLSGGMRQRAVIAMALS---------CNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELAD 221
Cdd:PRK13547 144 TTLSGGELARVQFARVLAqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223
|
250 260
....*....|....*....|....*
gi 639163462 222 RVMVMYAGRVVERGSRAELFSdPRH 246
Cdd:PRK13547 224 RIAMLADGAIVAHGAPADVLT-PAH 247
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-225 |
5.19e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 63.29 E-value: 5.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 26 SFDLE-------ESEILGVVGESGSGKT--VSLLAvmGLITDPNATIEGSIR--YKgrelvglparelrrlrgneiamif 94
Cdd:PRK13409 352 DFSLEveggeiyEGEVIGIVGPNGIGKTtfAKLLA--GVLKPDEGEVDPELKisYK------------------------ 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 95 qdpmtaltPVYtigwqiaeqirahrnISKSKAMeRVEELLA-------------EVNFP-NPHEAMSRYPHQLSGGMRQR 160
Cdd:PRK13409 406 --------PQY---------------IKPDYDG-TVEDLLRsitddlgssyyksEIIKPlQLERLLDKNVKDLSGGELQR 461
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMV 225
Cdd:PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
2-235 |
6.25e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 61.73 E-value: 6.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDglvrAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNATiEGSIRYKGRELVGLPARE 81
Cdd:PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKS-TLSATLAGREDYEVT-GGTVEFKGKDLLELSPED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlRGNE-IAMIFQDPMTalTPVYTIGWQIAEQIRAHRNISKSKAMER------VEELLAEVNFPNphEAMSRYPHQ-L 153
Cdd:PRK09580 75 ----RAGEgIFMAFQYPVE--IPGVSNQFFLQTALNAVRSYRGQEPLDRfdfqdlMEEKIALLKMPE--DLLTRSVNVgF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRaTHKSAVVFITHDMGVVSELA-DRVMVMYAGRVV 232
Cdd:PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQRILDYIKpDYVHVLYQGRIV 225
|
...
gi 639163462 233 ERG 235
Cdd:PRK09580 226 KSG 228
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-225 |
7.65e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 61.27 E-value: 7.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 28 DLEESEILGVVGESGSGKT--VSLLAvmGLITDPNATIE---GSIRYKGRELVGlparelrrlrgnEIAMIFQDPMTALT 102
Cdd:cd03237 21 SISESEVIGILGPNGIGKTtfIKMLA--GVLKPDEGDIEielDTVSYKPQYIKA------------DYEGTVRDLLSSIT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 P-VYTIGWQIAEqirahrnISKSKAMERVeellaevnfpnpheaMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:cd03237 87 KdFYTHPYFKTE-------IAKPLQIEQI---------------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMV 225
Cdd:cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-243 |
7.76e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.76 E-value: 7.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtndGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELVGLPARE 81
Cdd:PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKS-TLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLrgnEIAMIFQDPMtaLTPVYTIGWQIAEQIRAHRnisksKAMERVEELLAEVNFP-NPHEAMSryphQLSGGMRQR 160
Cdd:PRK15439 83 AHQL---GIYLVPQEPL--LFPNLSVKENILFGLPKRQ-----ASMQKMKQLLAALGCQlDLDSSAG----SLEVADRQI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALdvtVQAGILDLVRKLRATHKSAV--VFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:PRK15439 149 VEILRGLMRDSRILILDEPTASL---TPAETERLFSRIRELLAQGVgiVFISHKLPEIRQLADRISVMRDGTIALSGKTA 225
|
....*
gi 639163462 239 ELFSD 243
Cdd:PRK15439 226 DLSTD 230
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-225 |
1.58e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 61.72 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 28 DLEESEILGVVGESGSGKT--VSLLAvmGLITDPNATIEGSIR--YKgrelvglparelrrlrgneiamifqdpmtaltP 103
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTtfAKILA--GVLKPDEGEVDEDLKisYK--------------------------------P 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 104 VYTigwqiaeqirahrnisKSKAMERVEELLAEVNFP------------NP---HEAMSRYPHQLSGGMRQRAVIAMALS 168
Cdd:COG1245 408 QYI----------------SPDYDGTVEEFLRSANTDdfgssyykteiiKPlglEKLLDKNVKDLSGGELQRVAIAACLS 471
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 169 CNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMV 225
Cdd:COG1245 472 RDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
5-240 |
1.75e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 61.83 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 5 VRDLkvSFRTNDGLVR-AIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGR----------- 72
Cdd:PRK13545 24 LKDL--FFRSKDGEYHyALNNISFEVPEGEIVGIIGLNGSGKS-TLSNLIAGVTMPN---KGTVDIKGSaaliaissgln 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 73 -ELVGLPARELRRLrgneiamifqdpMTALTPvytigwqiaeqirahrniskskamERVEELLAEV-NFPNPHEAMSRYP 150
Cdd:PRK13545 98 gQLTGIENIELKGL------------MMGLTK------------------------EKIKEIIPEIiEFADIGKFIYQPV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 HQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGR 230
Cdd:PRK13545 142 KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKT-IFFISHSLSQVKSFCTKALWLHYGQ 220
|
250
....*....|
gi 639163462 231 VVERGSRAEL 240
Cdd:PRK13545 221 VKEYGDIKEV 230
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
2-240 |
2.07e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 60.04 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLvraiDGVSFDLEESEILGVVGESGSGKTvSLLAVmgLITDPNATI-EGSIRYKGRELVGLPAr 80
Cdd:CHL00131 7 ILEIKNLHASVNENEIL----KGLNLSINKGEIHAIMGPNGSGKS-TLSKV--IAGHPAYKIlEGDILFKGESILDLEP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 81 ELRRLRGneIAMIFQdpmtalTPVYTIGWQIAEQIRAHRNiSKSKAMERVE-------ELLAE----VNFpNPHeAMSRY 149
Cdd:CHL00131 79 EERAHLG--IFLAFQ------YPIEIPGVSNADFLRLAYN-SKRKFQGLPEldpleflEIINEklklVGM-DPS-FLSRN 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 PHQ-LSGGMRQRAVI-AMALScNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELA-DRVMVM 226
Cdd:CHL00131 148 VNEgFSGGEKKRNEIlQMALL-DSELAILDETDSGLDIDALKIIAEGINKLMTSENS-IILITHYQRLLDYIKpDYVHVM 225
|
250
....*....|....
gi 639163462 227 YAGRVVERGSrAEL 240
Cdd:CHL00131 226 QNGKIIKTGD-AEL 238
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
10-250 |
3.08e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 61.29 E-value: 3.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 10 VSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSIRYKGRELVGLPARELRRLRGne 89
Cdd:PLN03130 1243 VVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS-SMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLG-- 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 iaMIFQdpmtalTPVY---TIGWQIaEQIRAHRNISKSKAMERVEelLAEVNFPNP---HEAMSRYPHQLSGGMRQRAVI 163
Cdd:PLN03130 1317 --IIPQ------APVLfsgTVRFNL-DPFNEHNDADLWESLERAH--LKDVIRRNSlglDAEVSEAGENFSVGQRQLLSL 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 164 AMALSCNPALLVADEPTTALDVTVQAgildLVRK-LRATHKS-AVVFITHDMGVVSElADRVMVMYAGRVVERGSRAELF 241
Cdd:PLN03130 1386 ARALLRRSKILVLDEATAAVDVRTDA----LIQKtIREEFKScTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460
|
....*....
gi 639163462 242 SDPRHPYTR 250
Cdd:PLN03130 1461 SNEGSAFSK 1469
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
29-227 |
3.54e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.59 E-value: 3.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 29 LEESEILGVVGESGSGKTVSLLAVMGLITdPN-------ATIEGSI-RYKGRELvglpARELRRLRGNEIamifqdpmta 100
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI-PNlgdyeeePSWDEVLkRFRGTEL----QNYFKKLYNGEI---------- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 lTPVYTIgwQIAEQIRAH-----RNISKsKAMER--VEELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPAL 173
Cdd:PRK13409 161 -KVVHKP--QYVDLIPKVfkgkvRELLK-KVDERgkLDEVVERLGLEN---ILDRDISELSGGELQRVAIAAALLRDADF 233
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLraTHKSAVVFITHDMGVVSELADRVMVMY 227
Cdd:PRK13409 234 YFFDEPTSYLDIRQRLNVARLIREL--AEGKYVLVVEHDLAVLDYLADNVHIAY 285
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
21-231 |
4.21e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.51 E-value: 4.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRELVGLPARELRRlrgNEIAMIFQDPMTa 100
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI----REKSAGTITLHGKKINNHNANEAIN---HGFALVTEERRS- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 lTPVYT---IGWQ-IAEQIRAHRN----ISKSKAMERVEELLAEVNFPNPheamSRYPH--QLSGGMRQRAVIAMALSCN 170
Cdd:PRK10982 335 -TGIYAyldIGFNsLISNIRNYKNkvglLDNSRMKSDTQWVIDSMRVKTP----GHRTQigSLSGGNQQKVIIGRWLLTQ 409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 171 PALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRV 231
Cdd:PRK10982 410 PEILMLDEPTRGIDVGAKFEIYQLIAEL-AKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
151-227 |
5.20e-10 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 57.37 E-value: 5.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 151 HQLSGGMRQRAVIAMAL---SCNPA-LLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVsELADRVMVM 226
Cdd:cd03227 76 LQLSGGEKELSALALILalaSLKPRpLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIVITHLPELA-ELADKLIHI 153
|
.
gi 639163462 227 Y 227
Cdd:cd03227 154 K 154
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
3-216 |
5.41e-10 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 58.14 E-value: 5.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSfrtNDGLVrAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRELvglpaREL 82
Cdd:TIGR01189 1 LAARNLACS---RGERM-LFEGLSFTLNAGEALQVTGPNGIGKT-TLLRILAGLLRPDS---GEVRWNGTPL-----AEQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RRLRGNEIAMIFQDPmtALTPVYTIgwqiAEQIRAHRNISKSkAMERVEELLAEVNFpNPHEamSRYPHQLSGGMRQRAV 162
Cdd:TIGR01189 68 RDEPHENILYLGHLP--GLKPELSA----LENLHFWAAIHGG-AQRTIEDALAAVGL-TGFE--DLPAAQLSAGQQRRLA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 163 IAMALSCNPALLVADEPTTALDVtvqAGILDLVRKLRA-THKSAVVFIT--HDMGVV 216
Cdd:TIGR01189 138 LARLWLSRRPLWILDEPTTALDK---AGVALLAGLLRAhLARGGIVLLTthQDLGLV 191
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-211 |
5.42e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 58.35 E-value: 5.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 1 MILSVRDLKVSfRTNDGLVRaidGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLItdpnATIEGSIRYKGRELVGLPA 79
Cdd:PRK13539 1 MMLEGEDLACV-RGGRVLFS---GLSFTLAAGEALVLTGPNGSGKT-TLLRLIaGLL----PPAAGTIKLDGGDIDDPDV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RElrrlrgneiAMIFQDPMTALTPVYTIG-----WQiaeQIRAHRNISKSKAMERVE-ELLAEVNFpnpheamsRYphqL 153
Cdd:PRK13539 72 AE---------ACHYLGHRNAMKPALTVAenlefWA---AFLGGEELDIAAALEAVGlAPLAHLPF--------GY---L 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 154 SGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThKSAVVFITH 211
Cdd:PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATH 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
24-223 |
5.67e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 57.89 E-value: 5.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 24 GVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNAtieGSIRYKGRelvglPARELRRLRGNEIAMIFQDP--MTAL 101
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKT-TLLRILAGLSPPLA---GRVLLNGG-----PLDFQRDSIARGLLYLGHAPgiKTTL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVytigwqiaEQIRAHRNISkskAMERVEELLAEVNFPNPHEAMSrypHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:cd03231 89 SVL--------ENLRFWHADH---SDEQVEEALARVGLNGFEDRPV---AQLSAGQQRRVALARLLLSGRPLWILDEPTT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639163462 182 ALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRV 223
Cdd:cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
25-239 |
8.51e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 59.54 E-value: 8.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTvsllAVMGLITDPNATIEGSIRYKGREL-VGLPARELRRlrgnEIAMIFQD-PMTALT 102
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRS----ELMKLLYGATRRTAGQVYLDGKPIdIRSPRDAIRA----GIMLCPEDrKAEGII 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 103 PVYTIGWQIAeqIRAHRNISKSKAM--ERVEELLAE-------VNFPNPHEAMSryphQLSGGMRQRAVIAMALSCNPAL 173
Cdd:PRK11288 344 PVHSVADNIN--ISARRHHLRAGCLinNRWEAENADrfirslnIKTPSREQLIM----NLSGGNQQKAILGRWLSEDMKV 417
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 174 LVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAE 239
Cdd:PRK11288 418 ILLDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-211 |
9.07e-10 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 59.44 E-value: 9.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVsfRTNDGLVRaIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLitDPNATieGSIRykgrelvgLPAre 81
Cdd:COG4178 363 LALEDLTL--RTPDGRPL-LEDLSLSLKPGERLLITGPSGSGKS-TLLrAIAGL--WPYGS--GRIA--------RPA-- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlrGNEIAMIFQDPmtaltpvYTIGWQIAEQI---RAHRNISKskamERVEELLAEVNFPNPHEAMS---RYPHQLSG 155
Cdd:COG4178 425 -----GARVLFLPQRP-------YLPLGTLREALlypATAEAFSD----AELREALEAVGLGHLAERLDeeaDWDQVLSL 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 156 GMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRklRATHKSAVVFITH 211
Cdd:COG4178 489 GEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLR--EELPGTTVISVGH 542
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
20-233 |
9.25e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 57.66 E-value: 9.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 20 RAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLItdPNATIEGSIRYKGRELvglparelrrlrGNEIAMIfqdpmt 99
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAL--KGTPVAGCVDVPDNQF------------GREASLI------ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 altpvytigwqiaEQIRAHRNISKSKamerveELLAEVNFPNPHeAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEP 179
Cdd:COG2401 104 -------------DAIGRKGDFKDAV------ELLNAVGLSDAV-LWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEF 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 180 TTALDVT----VQAGILDLVRKLRAThksaVVFITHDMGVVSELADRVMVM--YAGRVVE 233
Cdd:COG2401 164 CSHLDRQtakrVARNLQKLARRAGIT----LVVATHHYDVIDDLQPDLLIFvgYGGVPEE 219
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
23-218 |
1.61e-09 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 56.74 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 23 DGVSFDLEESEILGVVGESGSGKTvSLLAVM-GLiTDPNatiEGSIRYKGRELvglparelRRLRGneiamIFQDPM--- 98
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKT-SLLRILaGL-ARPD---AGEVLWQGEPI--------RRQRD-----EYHQDLlyl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 -------TALTPVytigwqiaEQIRAHRNISKSKAMERVEELLAEVNfpnpheaMSRY---P-HQLSGGMRQRAVIAMAL 167
Cdd:PRK13538 80 ghqpgikTELTAL--------ENLRFYQRLHGPGDDEALWEALAQVG-------LAGFedvPvRQLSAGQQRRVALARLW 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 639163462 168 SCNPALLVADEPTTALDVtvqAGILDLVRKLR--ATHKSAVVFITH-DMGVVSE 218
Cdd:PRK13538 145 LTRAPLWILDEPFTAIDK---QGVARLEALLAqhAEQGGMVILTTHqDLPVASD 195
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
22-232 |
2.39e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.42 E-value: 2.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTvSLLAVMG--LITDpnatiEGSIRYKgRELVglpareLRRLRgneiamifQDPMT 99
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKS-TLMKILNgeVLLD-----DGRIIYE-QDLI------VARLQ--------QDPPR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 100 ALT-PVYTI---GWQ-IAEQIRAHRNISKS----------KAMERVEELLAEVN---FPN------------PHEAMSry 149
Cdd:PRK11147 78 NVEgTVYDFvaeGIEeQAEYLKRYHDISHLvetdpseknlNELAKLQEQLDHHNlwqLENrinevlaqlgldPDAALS-- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 150 phQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVqagiLDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:PRK11147 156 --SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET----IEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRG 229
|
...
gi 639163462 230 RVV 232
Cdd:PRK11147 230 KLV 232
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
29-227 |
2.67e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 57.87 E-value: 2.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 29 LEESEILGVVGESGSGKTVSLLAVMGLITdPN-------ATIEGSI-RYKGRELvglpARELRRLRGNEIamifqdpmta 100
Cdd:COG1245 96 PKKGKVTGILGPNGIGKSTALKILSGELK-PNlgdydeePSWDEVLkRFRGTEL----QDYFKKLANGEI---------- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 101 lTPVYTIgwQIAEQI-RAHRNISK---SKAMER--VEELLAEVNFPNpheAMSRYPHQLSGGMRQRAVIAMALSCNPALL 174
Cdd:COG1245 161 -KVAHKP--QYVDLIpKVFKGTVRellEKVDERgkLDELAEKLGLEN---ILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639163462 175 VADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELADRVMVMY 227
Cdd:COG1245 235 FFDEPSSYLDIYQRLNVARLIRELAEEGKYVLV-VEHDLAILDYLADYVHILY 286
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
30-227 |
2.70e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 56.99 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 30 EESEILGVVGESGSGKTVSLLAVMGLITdPNATIEGS-------IR-YKGRELvglpARELRRLRGNEIAMIFQDPMTAL 101
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDppdwdeiLDeFRGSEL----QNYFTKLLEGDVKVIVKPQYVDL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQIRAHRNISKSKAMERVEelLAEVnfpnpheaMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:cd03236 99 IPKAVKGKVGELLKKKDERGKLDELVDQLE--LRHV--------LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSS 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 639163462 182 ALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMY 227
Cdd:cd03236 169 YLDIKQRLNAARLIREL-AEDDNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
37-229 |
6.77e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 55.03 E-value: 6.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 37 VVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARELRRLRGNEIAMIFQDPmtaltpvYTIGWQIAEQIR 116
Cdd:cd03290 32 IVGQVGCGKSSLLLAILGEMQ----TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP-------WLLNATVEENIT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 117 --AHRNISKSKAMERVEELLAEVNFPnPHEAMSRYPHQ---LSGGMRQRAVIAMALSCNPALLVADEPTTALDV-----T 186
Cdd:cd03290 101 fgSPFNKQRYKAVTDACSLQPDIDLL-PFGDQTEIGERginLSGGQRQRICVARALYQNTNIVFLDDPFSALDIhlsdhL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 639163462 187 VQAGILDLVRKlratHKSAVVFITHDMGVVSElADRVMVMYAG 229
Cdd:cd03290 180 MQEGILKFLQD----DKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
22-239 |
1.66e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 55.57 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITDPNatIEGSIRYKGRELVglpARELRRLRGNEIAMIFQD----- 96
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSYGRN--ISGTVFKDGKEVD---VSTVSDAIDAGLAYVTEDrkgyg 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 -----------PMTALTPVYTIGW-------QIAEQIRAHRNISKSKAMERVEellaevnfpnpheamsryphQLSGGMR 158
Cdd:NF040905 351 lnliddikrniTLANLGKVSRRGVideneeiKVAEEYRKKMNIKTPSVFQKVG--------------------NLSGGNQ 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 159 QRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKsAVVFITHDMGVVSELADRVMVMYAGRVVERGSRA 238
Cdd:NF040905 411 QKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGK-GVIVISSELPELLGMCDRIYVMNEGRITGELPRE 489
|
.
gi 639163462 239 E 239
Cdd:NF040905 490 E 490
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-233 |
1.88e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 55.46 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtNDGLVraIDGVSFDLEESEILGVVGESGSGKTvSLL-AVMGLITdPNAtieGSIRYkGREL-VGLPA 79
Cdd:COG0488 315 VLELEGLSKSY--GDKTL--LDDLSLRIDRGDRIGLIGPNGAGKS-TLLkLLAGELE-PDS---GTVKL-GETVkIGYFD 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 80 RELRRLRGNeiamifqdpmtaLTPVYTIgWQIAEQIRAhrniskskamERVEELLAEVNFPNphEAMSRYPHQLSGGMRQ 159
Cdd:COG0488 385 QHQEELDPD------------KTVLDEL-RDGAPGGTE----------QEVRGYLGRFLFSG--DDAFKPVGVLSGGEKA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 160 RAVIAMALSCNPALLVADEPTTALDV-TVQAgildLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVE 233
Cdd:COG0488 440 RLALAKLLLSPPNVLLLDEPTNHLDIeTLEA----LEEAL-DDFPGTVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
9-211 |
1.02e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.00 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 9 KVSFRTNDGLVRAIDGvSFDLEESEILGVVGESGSGKTvSLLAVMGlitdpnatiegsirykgrelvGL-PARE--LRRL 85
Cdd:cd03223 5 NLSLATPDGRVLLKDL-SFEIKPGDRLLITGPSGTGKS-SLFRALA---------------------GLwPWGSgrIGMP 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 86 RGNEIAMIFQDP-MTALTpvytigwqIAEQIRahrniskskamerveellaevnfpnpheamsrYP--HQLSGGMRQRAV 162
Cdd:cd03223 62 EGEDLLFLPQRPyLPLGT--------LREQLI--------------------------------YPwdDVLSGGEQQRLA 101
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 639163462 163 IAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThksaVVFITH 211
Cdd:cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGIT----VISVGH 146
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
2-211 |
1.74e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.80 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTvSLLAV------MGLITDpnatiegsirykGRELV 75
Cdd:TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKT-TLLNVlaervtTGVITG------------GDRLV 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 76 GLPARELRRLRgnEIAMIFQDPMTALTPVYTIGWQIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYPHQ-LS 154
Cdd:TIGR00956 826 NGRPLDSSFQR--SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEgLN 903
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 155 GGMRQRAVIAMALSCNPALLV-ADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITH 211
Cdd:TIGR00956 904 VEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKL-ADHGQAILCTIH 960
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
2-226 |
1.83e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 50.70 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVsLLAVMGLITDpNATIEGSIRYKGRELVglpaRE 81
Cdd:cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTT-LLDVLAGRKT-AGVITGEILINGRPLD----KN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRlrgneiamifqdpmtaltpvyTIGWqiAEQIRAHrnISKSKAMERVEellaevnfpnpheaMSRYPHQLSGGMRQRA 161
Cdd:cd03232 77 FQR---------------------STGY--VEQQDVH--SPNLTVREALR--------------FSALLRGLSVEQRKRL 117
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 162 VIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVM 226
Cdd:cd03232 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
153-227 |
2.59e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 49.88 E-value: 2.59e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMY 227
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
25-255 |
3.46e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 51.83 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRelvglparelrrlrgneiamIFQDPMTALTPV 104
Cdd:TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPS---EGKIKHSGR--------------------ISFSPQTSWIMP 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 105 YTIGWQIAEQIR--AHRNISKSKAMErVEELLAEvnFPNPHE-AMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:TIGR01271 501 GTIKDNIIFGLSydEYRYTSVIKACQ-LEEDIAL--FPEKDKtVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 182 ALDVTVQAGILD-LVRKLRATHKSAVVfiTHDMGVVSElADRVMVMYAGRVVERGSRAELfSDPRHPYTRALLGS 255
Cdd:TIGR01271 578 HLDVVTEKEIFEsCLCKLMSNKTRILV--TSKLEHLKK-ADKILLLHEGVCYFYGTFSEL-QAKRPDFSSLLLGL 648
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
11-242 |
5.71e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.10 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 11 SFRTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLitdpNATIEGSIRYKGRELVGLPARELRrlrgNEI 90
Cdd:TIGR00957 1291 CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI----NESAEGEIIIDGLNIAKIGLHDLR----FKI 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 91 AMIFQDPM-------TALTPvytIGWQIAEQIRAHRNISKSKAMerVEELLAEVNFpnpheAMSRYPHQLSGGMRQRAVI 163
Cdd:TIGR00957 1363 TIIPQDPVlfsgslrMNLDP---FSQYSDEEVWWALELAHLKTF--VSALPDKLDH-----ECAEGGENLSVGQRQLVCL 1432
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639163462 164 AMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAThkSAVVFITHDMGVVSELAdRVMVMYAGRVVERGSRAELFS 242
Cdd:TIGR00957 1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED--CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQ 1508
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
82-242 |
6.29e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.18 E-value: 6.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 LRRLRgNEIAMIFQDPMTALTPVYtigwqiaEQIRAHRNISKSKAMERVEELLAEVNF----PNPHEA-MSRYPHQLSGG 156
Cdd:PTZ00265 1291 LKDLR-NLFSIVSQEPMLFNMSIY-------ENIKFGKEDATREDVKRACKFAAIDEFieslPNKYDTnVGPYGKSLSGG 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVSElADRVMVM----YAGRVV 232
Cdd:PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFnnpdRTGSFV 1441
|
170
....*....|.
gi 639163462 233 E-RGSRAELFS 242
Cdd:PTZ00265 1442 QaHGTHEELLS 1452
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
25-254 |
6.34e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 49.86 E-value: 6.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGLItDPNatiEGSIRYKGRelvglparelrrlrgneiamIFQDPMTALTPV 104
Cdd:cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPS---EGKIKHSGR--------------------ISFSSQFSWIMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 105 YTIGWQIAEQIR--AHRNISKSKAMERVEELLAevnFPNP-HEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTT 181
Cdd:cd03291 112 GTIKENIIFGVSydEYRYKSVVKACQLEEDITK---FPEKdNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639163462 182 ALDVTVQAGILD-LVRKLRATHKSavVFITHDMGVVSElADRVMVMYAGRVVERGSRAELfSDPRHPYTRALLG 254
Cdd:cd03291 189 YLDVFTEKEIFEsCVCKLMANKTR--ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSEL-QSLRPDFSSKLMG 258
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
5-243 |
7.16e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 49.81 E-value: 7.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 5 VRDLKVSFRTNDGLVrAIDGVSFDLEESEILGVVGESGSGKTvSLLAVMGLITDPNatiEGSI-RYKGRELVGLPARELR 83
Cdd:PRK13546 24 MKDALIPKHKNKTFF-ALDDISLKAYEGDVIGLVGINGSGKS-TLSNIIGGSLSPT---VGKVdRNGEVSVIAISAGLSG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 84 RLRGNE------IAMIF-QDPMTALTPvytigwQIAEqirahrniskskaMERVEELLaevnfpnpHEAMSRYphqlSGG 156
Cdd:PRK13546 99 QLTGIEniefkmLCMGFkRKEIKAMTP------KIIE-------------FSELGEFI--------YQPVKKY----SSG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSaVVFITHDMGVVSELADRVMVMYAGRVVERGS 236
Cdd:PRK13546 148 MRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKT-IFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE 226
|
....*..
gi 639163462 237 RAELFSD 243
Cdd:PRK13546 227 LDDVLPK 233
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
37-229 |
7.47e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 50.61 E-value: 7.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 37 VVGESGSGKTVSLLAVMGLITdpNATIEGSIRykgreLVGLPARE--LRRLRG----NEIAmifqdpmtalTPVYTIGWQ 110
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAGRKT--GGYIEGDIR-----ISGFPKKQetFARISGyceqNDIH----------SPQVTVRES 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 111 I--AEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAMSRYP--HQLSGGMRQRAVIAMALSCNPALLVADEPTTALDVT 186
Cdd:PLN03140 974 LiySAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 639163462 187 VQAGILDLVRKLRATHKSAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
21-240 |
1.08e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 50.12 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnATiEGSIRYKGRELVglpAREL--RRLRG---------NE 89
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLP---AS-EGEAWLFGQPVD---AGDIatRRRVGymsqafslyGE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 I---------AMIFQDPmtaltpvytigwqiAEQIRAhrniskskameRVEELLAEVNFpnpHEAMSRYPHQLSGGMRQR 160
Cdd:NF033858 354 LtvrqnlelhARLFHLP--------------AAEIAA-----------RVAEMLERFDL---ADVADALPDSLPLGIRQR 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 161 AVIAMALSCNPALLVADEPTTALDVTVQAG----ILDLVRKLRAThksavVFI-THDMGvVSELADRVMVMYAGRVVERG 235
Cdd:NF033858 406 LSLAVAVIHKPELLILDEPTSGVDPVARDMfwrlLIELSREDGVT-----IFIsTHFMN-EAERCDRISLMHAGRVLASD 479
|
....*
gi 639163462 236 SRAEL 240
Cdd:NF033858 480 TPAAL 484
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-241 |
2.44e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 49.17 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 22 IDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLI--TDPNATIEGSIRYkgrelvgLPARELRR---LRGNeiaMIFQD 96
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMdkVEGHVHMKGSVAY-------VPQQAWIQndsLREN---ILFGK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 97 PMTAltPVYTigwQIAEQIRAHRNISKSKAMERVEELLAEVNfpnpheamsryphqLSGGMRQRAVIAMALSCNPALLVA 176
Cdd:TIGR00957 724 ALNE--KYYQ---QVLEACALLPDLEILPSGDRTEIGEKGVN--------------LSGGQKQRVSLARAVYSNADIYLF 784
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639163462 177 DEPTTALDVTVQAGILDLVRKLRATHKSAV-VFITHDMGVVSELaDRVMVMYAGRVVERGSRAELF 241
Cdd:TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTrILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
11-279 |
3.21e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 48.47 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 11 SFRTNDGLVRAIDgvSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPARELRRLrgneI 90
Cdd:PRK10938 10 TFRLSDTKTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELP----LLSGERQSQFSHITRLSFEQLQKL----V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 91 AMIFQDPMTALTPVYT--IGWQIAEQIRAHrniskSKAMERVEELLAEvnFPNPHeAMSRYPHQLSGGMRQRAVIAMALS 168
Cdd:PRK10938 80 SDEWQRNNTDMLSPGEddTGRTTAEIIQDE-----VKDPARCEQLAQQ--FGITA-LLDRRFKYLSTGETRKTLLCQALM 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 169 CNPALLVADEPTTALDVTVQAGILDLVRKLrATHKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSRAELFSDP---R 245
Cdd:PRK10938 152 SEPDLLILDEPFDGLDVASRQQLAELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAlvaQ 230
|
250 260 270
....*....|....*....|....*....|....
gi 639163462 246 HPYTRALLGSIPPLTGEKPRRLPAIPGSPPSLLR 279
Cdd:PRK10938 231 LAHSEQLEGVQLPEPDEPSARHALPANEPRIVLN 264
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
35-212 |
3.48e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.39 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 35 LGVVGESGSGKTvSLLAVM-GLIT-----------------------DPNATIegsirykgRELVGLPARELRRL--RGN 88
Cdd:TIGR03719 34 IGVLGLNGAGKS-TLLRIMaGVDKdfngearpqpgikvgylpqepqlDPTKTV--------RENVEEGVAEIKDAldRFN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 89 EIAMIFQDP---MTALtpvytigwqIAEQIRAHRNISKSKA--MERVEELLAE-VNFPNPHEAMSRyphqLSGGMRQRAV 162
Cdd:TIGR03719 105 EISAKYAEPdadFDKL---------AAEQAELQEIIDAADAwdLDSQLEIAMDaLRCPPWDADVTK----LSGGERRRVA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 639163462 163 IAMALSCNPALLVADEPTTALDvtvqAGILDLVRKLRATHKSAVVFITHD 212
Cdd:TIGR03719 172 LCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD 217
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
3-249 |
6.37e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 46.83 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSFRTNdgLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRELVGLPAREL 82
Cdd:cd03288 20 IKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD----IFDGKIVIDGIDISKLPLHTL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 83 RrlrgNEIAMIFQDPMTaltpvytigwqIAEQIRAHRNISKSKAMERVEELLAEVNFPNPHEAM--------SRYPHQLS 154
Cdd:cd03288 94 R----SRLSIILQDPIL-----------FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLpggldavvTEGGENFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 155 GGMRQRAVIAMALSCNPALLVADEPTTALDVTVQaGILDLVrKLRATHKSAVVFITHDMGVVSElADRVMVMYAGRVVER 234
Cdd:cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKV-VMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVEC 235
|
250
....*....|....*
gi 639163462 235 GSRAELFSDPRHPYT 249
Cdd:cd03288 236 DTPENLLAQEDGVFA 250
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
3-230 |
6.55e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 46.31 E-value: 6.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 3 LSVRDLKVSF-RTNDGLVRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdpnaTIEGSIRYKGRelvglpare 81
Cdd:cd03250 1 ISVEDASFTWdSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE----KLSGSVSVPGS--------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlrgneIAMIFQDPmtaltpvytigWQIAEQIRAhrNISKSKAMErvEELLAEV-----------NFPNPHEAM---- 146
Cdd:cd03250 68 --------IAYVSQEP-----------WIQNGTIRE--NILFGKPFD--EERYEKVikacalepdleILPDGDLTEigek 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 147 --SryphqLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILD-LVRKLRATHKsAVVFITHDMGVVSElADRV 223
Cdd:cd03250 125 giN-----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEnCILGLLLNNK-TRILVTHQLQLLPH-ADQI 197
|
....*..
gi 639163462 224 MVMYAGR 230
Cdd:cd03250 198 VVLDNGR 204
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
152-247 |
8.37e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.33 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVFITHDMGVVsELADRVMVMyAGRv 231
Cdd:PTZ00265 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVL-SNR- 655
|
90
....*....|....*.
gi 639163462 232 vERGSRAELFSDPRHP 247
Cdd:PTZ00265 656 -ERGSTVDVDIIGEDP 670
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
29-237 |
9.17e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 47.41 E-value: 9.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 29 LEESEILGVVGESGSGKTVSLLAVMGLITDPNATIEGSIRYKGrelvgLPARELRRLRGNEIAMIFQDP--MTALTPVYT 106
Cdd:TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-----ITPEEIKKHYRGDVVYNAETDvhFPHLTVGET 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 107 IGWQIAEQIRAHR--NISKSKAMERVEELLAEVnFPNPHEAMSRYPHQL----SGGMRQRAVIAMALSCNPALLVADEPT 180
Cdd:TIGR00956 159 LDFAARCKTPQNRpdGVSREEYAKHIADVYMAT-YGLSHTRNTKVGNDFvrgvSGGERKRVSIAEASLGGAKIQCWDNAT 237
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 181 TALDvtvQAGILDLVRKLRA----THKSAVVFITHDMGVVSELADRVMVMYAGRVVERGSR 237
Cdd:TIGR00956 238 RGLD---SATALEFIRALKTsaniLDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
152-240 |
1.96e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 46.27 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 152 QLSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKS-AVVFITHDMgvvsELADR---VMVMY 227
Cdd:NF033858 136 KLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERPGmSVLVATAYM----EEAERfdwLVAMD 211
|
90
....*....|...
gi 639163462 228 AGRVVERGSRAEL 240
Cdd:NF033858 212 AGRVLATGTPAEL 224
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
25-243 |
2.11e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 46.27 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 25 VSFDLEESEILGVVGESGSGKTVSLLAVMGLI---TDPNATIEGSIRY------------KGRELVGLPARELRRLRGNE 89
Cdd:PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELpprSDASVVIRGTVAYvpqvswifnatvRDNILFGSPFDPERYERAID 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 90 IAMIFQD----PMTALTpvyTIGwqiaeqirahrniskskamERveellaEVNfpnpheamsryphqLSGGMRQRAVIAM 165
Cdd:PLN03130 716 VTALQHDldllPGGDLT---EIG-------------------ER------GVN--------------ISGGQKQRVSMAR 753
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 166 ALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSELaDRVMVMYAGRVVERGSRAELFSD 243
Cdd:PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVL-VTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSNN 829
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-212 |
4.69e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 44.93 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 2 ILSVRDLKVSFrtNDGLVraIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGLITdPNAtieGSIRYkgrelvglpare 81
Cdd:TIGR03719 322 VIEAENLTKAF--GDKLL--IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-PDS---GTIEI------------ 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 82 lrrlrGNEIAMIFQDPM-TALTPVYTIgWQ-IA---EQIRAHRNISKSKAMerveelLAEVNFPNPHEamSRYPHQLSGG 156
Cdd:TIGR03719 382 -----GETVKLAYVDQSrDALDPNKTV-WEeISgglDIIKLGKREIPSRAY------VGRFNFKGSDQ--QKKVGQLSGG 447
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 157 MRQRAVIAMALSCNPALLVADEPTTALDV-TVQA---GILDLVrklrathKSAVVfITHD 212
Cdd:TIGR03719 448 ERNRVHLAKTLKSGGNVLLLDEPTNDLDVeTLRAleeALLNFA-------GCAVV-ISHD 499
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
153-235 |
6.24e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 43.08 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIA--MALSCNPALLVADEPTTALDVTVQAGILDLVRKLRaTHKSAVVFITHDMGVVSElADRVMVM---- 226
Cdd:cd03238 88 LSGGELQRVKLAseLFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNLDVLSS-ADWIIDFgpgs 165
|
90
....*....|.
gi 639163462 227 --YAGRVVERG 235
Cdd:cd03238 166 gkSGGKVVFSG 176
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
19-232 |
6.84e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 44.34 E-value: 6.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 19 VRAIDGVSFDLEESEILGVVGESGSGKTVSLLAVMGlITDPNatiEGSIRYKGRELVGLPARELRRlrgNEIAMIFQDpm 98
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG-IYQKD---SGSILFQGKEIDFKSSKEALE---NGISMVHQE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 99 taLTPV-------------YTIGWQIAEQIRAHRNiskSKAMerVEELLAEVNfpnPHEAMSryphQLSGGMRQRAVIAM 165
Cdd:PRK10982 82 --LNLVlqrsvmdnmwlgrYPTKGMFVDQDKMYRD---TKAI--FDELDIDID---PRAKVA----TLSVSQMQMIEIAK 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639163462 166 ALSCNPALLVADEPTTALDVTVQAGILDLVRKLRAtHKSAVVFITHDMGVVSELADRVMVMYAGRVV 232
Cdd:PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-229 |
9.95e-05 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 44.23 E-value: 9.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 21 AIDGVSFDLEESEILGVVGESGSGKTVSLLAVMG--LITDPNATIEG-SIrykgrelvglpareLRRLRGNEIAMIFQDP 97
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGdtTVTSGDATVAGkSI--------------LTNISDVHQNMGYCPQ 2019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 98 MTALTPVYTIGWQIAEQIRAhRNISkSKAMERVeellaeVNFPNPHEAMSRYPHQL----SGGMRQRAVIAMALSCNPAL 173
Cdd:TIGR01257 2020 FDAIDDLLTGREHLYLYARL-RGVP-AEEIEKV------ANWSIQSLGLSLYADRLagtySGGNKRKLSTAIALIGCPPL 2091
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 174 LVADEPTTALDVTVQA----GILDLVRKLRathksAVVFITHDMGVVSELADRVMVMYAG 229
Cdd:TIGR01257 2092 VLLDEPTTGMDPQARRmlwnTIVSIIREGR-----AVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
153-241 |
1.06e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.20 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRKLRATHKSAVVfITHDMGVVSeLADRVMVMYAGRVV 232
Cdd:PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVL-VTNQLHFLP-LMDRIILVSEGMIK 818
|
....*....
gi 639163462 233 ERGSRAELF 241
Cdd:PLN03232 819 EEGTFAELS 827
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
129-224 |
1.18e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 43.62 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 129 RVEELLAEVNFPNphEAMSRYPHQLSGGMRQRAVIAMALSCNPALLVADEPTTALDvtvqagiLDLVRKLRATHKS---A 205
Cdd:PRK10636 128 RAASLLHGLGFSN--EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD-------LDAVIWLEKWLKSyqgT 198
|
90
....*....|....*....
gi 639163462 206 VVFITHDMGVVSELADRVM 224
Cdd:PRK10636 199 LILISHDRDFLDPIVDKII 217
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
36-185 |
6.76e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.38 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 36 GVVGESGSGKTvSLLAVMGLitdpnATIEG-----SIRYKGRELVG---------LPARELRRLRGNEIAMIFQDPMTAL 101
Cdd:PLN03073 207 GLVGRNGTGKT-TFLRYMAM-----HAIDGipkncQILHVEQEVVGddttalqcvLNTDIERTQLLEEEAQLVAQQRELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 102 TPVYTIGWQIAEQirahRNISKSKAMERVEELLAEVNFPNPHEAMSRYP-----------------HQLSGGMRQRAVIA 164
Cdd:PLN03073 281 FETETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEARAAsilaglsftpemqvkatKTFSGGWRMRIALA 356
|
170 180
....*....|....*....|.
gi 639163462 165 MALSCNPALLVADEPTTALDV 185
Cdd:PLN03073 357 RALFIEPDLLLLDEPTNHLDL 377
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
143-276 |
1.24e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.58 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 143 HEAMSRYPHQLSGGMRQRAVIAMAL---SCNPALLVADEPTTALDV-TVQAGILDLvrkLRATHKS-AVVFITHDMGVVs 217
Cdd:PRK00635 800 YLPLGRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHThDIKALIYVL---QSLTHQGhTVVIIEHNMHVV- 875
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639163462 218 ELADRVMVM------YAGRVVERGSRAELFSdPRHPYTRALLGSIppltgEKPRRLPAIPGSPPS 276
Cdd:PRK00635 876 KVADYVLELgpeggnLGGYLLASCSPEELIH-LHTPTAKALRPYL-----SSPQELPYLPDPSPK 934
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
153-244 |
1.80e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.15 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALSCNPALLVADEPTTALDVTVQAGILDLVRkLRATHKSAVVFITHDMGVVSeLADRVMVMYAGRVV 232
Cdd:PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF-LGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE 860
|
90
....*....|..
gi 639163462 233 ERGSRAELFSDP 244
Cdd:PTZ00243 861 FSGSSADFMRTS 872
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
152-212 |
7.58e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 36.82 E-value: 7.58e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639163462 152 QLSGGMRQ------RAVIAMALSCNPALLVADEPTTALDV-TVQAGILDLVRKLRATHKSAVVFITHD 212
Cdd:cd03240 115 RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIVITHD 182
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
153-216 |
8.65e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 37.69 E-value: 8.65e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639163462 153 LSGGMRQRAVIAMALS---CNPALLVADEPTTAL---DVtvqAGILDLVRKLRATHKSAVVfITHDMGVV 216
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLhfdDI---KKLLEVLQRLVDKGNTVVV-IEHNLDVI 895
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
153-212 |
9.07e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 37.62 E-value: 9.07e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639163462 153 LSGGMRQRAVIAmALSCNPA-LLVADEPTTALDVTVqagiLDLVRKLRATHKSAVVFITHD 212
Cdd:PRK11147 441 LSGGERNRLLLA-RLFLKPSnLLILDEPTNDLDVET----LELLEELLDSYQGTVLLVSHD 496
|
|
| |
