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Conserved domains on  [gi|639234493|ref|WP_024565488|]
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hypothetical protein [Elizabethkingia anophelis]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LolA_like super family cl25483
Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane ...
118-218 1.74e-06

Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane lipoprotein-sorting proteins.


The actual alignment was detected with superfamily member pfam17131:

Pssm-ID: 435738 [Multi-domain]  Cd Length: 184  Bit Score: 46.79  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639234493  118 DYDSKGFVANY----LGKEKIGNVDCFKVELV-KNVN----KTIYYFDANTYMLVREIN--------KTdiLTYYDYRKV 180
Cdd:pfam17131  62 DLSRSRLVDDYthelLGEETVGGKDCYVLELTpKDKDvsysKRVLWVDKETYLPLKAEFydksgkllKT--LTVSDIEKI 139
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639234493  181 GNLLMPFRIESSSQKKEGDYVLLFNKIEVNKVFPNNTF 218
Cdd:pfam17131 140 DGRWTPTKMEMEDLQTGHKTVLEISDIEFDTGLPDKLF 177
 
Name Accession Description Interval E-value
LolA_like pfam17131
Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane ...
118-218 1.74e-06

Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane lipoprotein-sorting proteins.


Pssm-ID: 435738 [Multi-domain]  Cd Length: 184  Bit Score: 46.79  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639234493  118 DYDSKGFVANY----LGKEKIGNVDCFKVELV-KNVN----KTIYYFDANTYMLVREIN--------KTdiLTYYDYRKV 180
Cdd:pfam17131  62 DLSRSRLVDDYthelLGEETVGGKDCYVLELTpKDKDvsysKRVLWVDKETYLPLKAEFydksgkllKT--LTVSDIEKI 139
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639234493  181 GNLLMPFRIESSSQKKEGDYVLLFNKIEVNKVFPNNTF 218
Cdd:pfam17131 140 DGRWTPTKMEMEDLQTGHKTVLEISDIEFDTGLPDKLF 177
LolA_like cd16329
proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein ...
114-218 5.58e-06

proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB; This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.


Pssm-ID: 319986  Cd Length: 225  Bit Score: 45.77  E-value: 5.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639234493 114 TDFI--DYDSKGFVANY----LGKEKIGNVDCFKVELV----KNVN--KTIYYFDANTYMLVREI------NKTDILTYY 175
Cdd:cd16329  102 SDFSyeDLSRSRLLEDYtyklLGEEEVDGRDCYVLELTpkdgADSGysKRVLWVDKDTFLPLKAEyydrsgKLLKTLTFS 181
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 639234493 176 DYRKVGNLLMPFRIESSSQKKEGDYVLLFNKIEVNKVFPNNTF 218
Cdd:cd16329  182 DIKKIGGYWRPTRMEMKDLLTGHKTVLEYSDIKFNVGLPDSLF 224
 
Name Accession Description Interval E-value
LolA_like pfam17131
Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane ...
118-218 1.74e-06

Outer membrane lipoprotein-sorting protein; This is likely to be a family of outer-membrane lipoprotein-sorting proteins.


Pssm-ID: 435738 [Multi-domain]  Cd Length: 184  Bit Score: 46.79  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639234493  118 DYDSKGFVANY----LGKEKIGNVDCFKVELV-KNVN----KTIYYFDANTYMLVREIN--------KTdiLTYYDYRKV 180
Cdd:pfam17131  62 DLSRSRLVDDYthelLGEETVGGKDCYVLELTpKDKDvsysKRVLWVDKETYLPLKAEFydksgkllKT--LTVSDIEKI 139
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 639234493  181 GNLLMPFRIESSSQKKEGDYVLLFNKIEVNKVFPNNTF 218
Cdd:pfam17131 140 DGRWTPTKMEMEDLQTGHKTVLEISDIEFDTGLPDKLF 177
LolA_like cd16329
proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein ...
114-218 5.58e-06

proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB; This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.


Pssm-ID: 319986  Cd Length: 225  Bit Score: 45.77  E-value: 5.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639234493 114 TDFI--DYDSKGFVANY----LGKEKIGNVDCFKVELV----KNVN--KTIYYFDANTYMLVREI------NKTDILTYY 175
Cdd:cd16329  102 SDFSyeDLSRSRLLEDYtyklLGEEEVDGRDCYVLELTpkdgADSGysKRVLWVDKDTFLPLKAEyydrsgKLLKTLTFS 181
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 639234493 176 DYRKVGNLLMPFRIESSSQKKEGDYVLLFNKIEVNKVFPNNTF 218
Cdd:cd16329  182 DIKKIGGYWRPTRMEMKDLLTGHKTVLEYSDIKFNVGLPDSLF 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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