NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|639299380|ref|WP_024589642|]
View 

MULTISPECIES: DUF6482 family protein [Pseudoalteromonas]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF6482 pfam20090
Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. ...
 1-96 7.21e-44

Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


:

Pssm-ID: 437922  Cd Length: 101  Bit Score: 137.67  E-value: 7.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639299380    1 MGIKFSQLKKHEPLQKVIVHSLDMALYQVSVMINNVEYYVTEDSGEFLRALSPLHVQKRFDKIAYAEMVLRQTSAYDEMC 80
Cdd:pfam20090   1 MKITLSELERLAPIDKLIIHSLEMSLYQVSVVIDGEEHLVYDDDGKPLRFRSLLEIRELLAGLPVESAVLRHQSAYDEMI 80

                          90
                  ....*....|....*.
gi 639299380   81 GQPEKTGSNMLEVPYG 96
Cdd:pfam20090  81 GQPTRQGDNTLEVPLG 96
 
Name Accession Description Interval E-value
DUF6482 pfam20090
Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. ...
 1-96 7.21e-44

Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


Pssm-ID: 437922  Cd Length: 101  Bit Score: 137.67  E-value: 7.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639299380    1 MGIKFSQLKKHEPLQKVIVHSLDMALYQVSVMINNVEYYVTEDSGEFLRALSPLHVQKRFDKIAYAEMVLRQTSAYDEMC 80
Cdd:pfam20090   1 MKITLSELERLAPIDKLIIHSLEMSLYQVSVVIDGEEHLVYDDDGKPLRFRSLLEIRELLAGLPVESAVLRHQSAYDEMI 80

                          90
                  ....*....|....*.
gi 639299380   81 GQPEKTGSNMLEVPYG 96
Cdd:pfam20090  81 GQPTRQGDNTLEVPLG 96
 
Name Accession Description Interval E-value
DUF6482 pfam20090
Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. ...
 1-96 7.21e-44

Family of unknown function (DUF6482); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


Pssm-ID: 437922  Cd Length: 101  Bit Score: 137.67  E-value: 7.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639299380    1 MGIKFSQLKKHEPLQKVIVHSLDMALYQVSVMINNVEYYVTEDSGEFLRALSPLHVQKRFDKIAYAEMVLRQTSAYDEMC 80
Cdd:pfam20090   1 MKITLSELERLAPIDKLIIHSLEMSLYQVSVVIDGEEHLVYDDDGKPLRFRSLLEIRELLAGLPVESAVLRHQSAYDEMI 80

                          90
                  ....*....|....*.
gi 639299380   81 GQPEKTGSNMLEVPYG 96
Cdd:pfam20090  81 GQPTRQGDNTLEVPLG 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH