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Conserved domains on  [gi|639337081|ref|WP_024600086|]
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MULTISPECIES: 50S ribosomal protein L1 [Pseudoalteromonas]

Protein Classification

50S ribosomal protein L1( domain architecture ID 10784990)

50S ribosomal protein L1 binds directly to 23S rRNA and is part of the 50S ribosomal subunit L1 stalk, which is involved in E site tRNA release

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RplA COG0081
Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 ...
1-226 1.01e-138

Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 439851 [Multi-domain]  Cd Length: 226  Bit Score: 387.87  E-value: 1.01e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   1 MAKLTKRMRTIREKVEVTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ 80
Cdd:COG0081    1 MAKLSKRYKAAAEKVDRNKLYSLEEAVELVKETATAKFDETVEVAVRLGVDPRKADQMVRGTVVLPHGTGKTVRVAVFAK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  81 GANAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQ 160
Cdd:COG0081   81 GEKAEEAKAAGADYVGAEDLIEKIQGGWLDFDVVIATPDMMGKVGKLGKILGPRGLMPNPKTGTVTMDVAKAVKEAKAGK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639337081 161 VRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQ 226
Cdd:COG0081  161 VEFRVDKAGIIHAPIGKVSFDAEKLKENLKALLDALIKAKPASAKGTYIKKITLSSTMGPGVKVDP 226
 
Name Accession Description Interval E-value
RplA COG0081
Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 ...
1-226 1.01e-138

Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439851 [Multi-domain]  Cd Length: 226  Bit Score: 387.87  E-value: 1.01e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   1 MAKLTKRMRTIREKVEVTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ 80
Cdd:COG0081    1 MAKLSKRYKAAAEKVDRNKLYSLEEAVELVKETATAKFDETVEVAVRLGVDPRKADQMVRGTVVLPHGTGKTVRVAVFAK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  81 GANAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQ 160
Cdd:COG0081   81 GEKAEEAKAAGADYVGAEDLIEKIQGGWLDFDVVIATPDMMGKVGKLGKILGPRGLMPNPKTGTVTMDVAKAVKEAKAGK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639337081 161 VRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQ 226
Cdd:COG0081  161 VEFRVDKAGIIHAPIGKVSFDAEKLKENLKALLDALIKAKPASAKGTYIKKITLSSTMGPGVKVDP 226
rplA_bact TIGR01169
ribosomal protein L1, bacterial/chloroplast; This model describes bacterial (and chloroplast) ...
3-229 1.82e-121

ribosomal protein L1, bacterial/chloroplast; This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211630  Cd Length: 227  Bit Score: 344.27  E-value: 1.82e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081    3 KLTKRMRTIREKVEVTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGA 82
Cdd:TIGR01169   1 KLSKRYRAAREKVDRNKLYSLDEAIDLLKETATAKFDETVEVAIRLGIDPRKSDQQVRGSVVLPHGTGKTVRVAVFAKGE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   83 NAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVR 162
Cdd:TIGR01169  81 KAKEAKAAGADYVGSDDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPNPKTGTVTTDVAKAVKNAKKGQVE 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639337081  163 YRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQNTL 229
Cdd:TIGR01169 161 FRADKAGNIHAPIGKVSFDSEKLKENLEALLDAIKKAKPSGAKGQYIKNIALSSTMGPGIKVDLNSL 227
rpl1 CHL00129
ribosomal protein L1; Reviewed
1-230 1.63e-88

ribosomal protein L1; Reviewed


Pssm-ID: 177051  Cd Length: 229  Bit Score: 261.09  E-value: 1.63e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   1 MAKLTKRMRTIREKVEvTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ 80
Cdd:CHL00129   1 MKKLSRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTN 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  81 GANAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQ 160
Cdd:CHL00129  80 EEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGK 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 161 VRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQNTLS 230
Cdd:CHL00129 160 LEYRADKTGIVHVLFGKSNFTEEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229
Ribosomal_L1 pfam00687
Ribosomal protein L1p/L10e family; This family includes prokaryotic L1 and eukaryotic L10.
30-219 6.10e-72

Ribosomal protein L1p/L10e family; This family includes prokaryotic L1 and eukaryotic L10.


Pssm-ID: 459905  Cd Length: 197  Bit Score: 217.76  E-value: 6.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   30 LKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDLAELVK--- 105
Cdd:pfam00687   1 LKKHAKAKFDESVELALNLtGVDPRKADQRVRGTIVLPHGTGKTVRVCVFAKDPQAEEAKEAGADVVGGEDLKEKIKnfe 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  106 ---KGEMNFDVVVASPDAMRVVGQ-LGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFT 181
Cdd:pfam00687  81 akrKLAKDFDLFLADPDIMPLLGKlLGKILGPRGKMPNPKKGTVTKDVAKAVEEAKSGTVEFRVDKGGCIHVKVGKVSFT 160
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 639337081  182 AEQLQQNLESLIVALKKAKPSqaKGVYLKKVTISTTMG 219
Cdd:pfam00687 161 PEQLAENIEAVIDALVKKKPK--GGQNIKSIYLKTTMG 196
Ribosomal_L1 cd00403
Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of ...
23-224 2.64e-67

Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.


Pssm-ID: 238235  Cd Length: 208  Bit Score: 206.27  E-value: 2.64e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  23 INEAVALLKELA--TAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDL 100
Cdd:cd00403    1 LEEAIKALKKTSvkKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGEDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 101 AELVKKGEM-----NFDVVVASP-DAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKaGQVRYRNDKNGIIHTT 174
Cdd:cd00403   81 KKKIKNGEAkklakDFDLFLADPrIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAK-SSVEFRLDKGGCIHVP 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 639337081 175 IGKVDFTAEQLQQNLESLIVALKKAKPSqAKGVYLKKVTISTTMGAGVSV 224
Cdd:cd00403  160 VGKVSMSPEQLVENIEAVINALVKKLPS-KKGQNIKSIYLKTTMGPSLPI 208
 
Name Accession Description Interval E-value
RplA COG0081
Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 ...
1-226 1.01e-138

Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L1 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439851 [Multi-domain]  Cd Length: 226  Bit Score: 387.87  E-value: 1.01e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   1 MAKLTKRMRTIREKVEVTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ 80
Cdd:COG0081    1 MAKLSKRYKAAAEKVDRNKLYSLEEAVELVKETATAKFDETVEVAVRLGVDPRKADQMVRGTVVLPHGTGKTVRVAVFAK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  81 GANAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQ 160
Cdd:COG0081   81 GEKAEEAKAAGADYVGAEDLIEKIQGGWLDFDVVIATPDMMGKVGKLGKILGPRGLMPNPKTGTVTMDVAKAVKEAKAGK 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639337081 161 VRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQ 226
Cdd:COG0081  161 VEFRVDKAGIIHAPIGKVSFDAEKLKENLKALLDALIKAKPASAKGTYIKKITLSSTMGPGVKVDP 226
rplA_bact TIGR01169
ribosomal protein L1, bacterial/chloroplast; This model describes bacterial (and chloroplast) ...
3-229 1.82e-121

ribosomal protein L1, bacterial/chloroplast; This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211630  Cd Length: 227  Bit Score: 344.27  E-value: 1.82e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081    3 KLTKRMRTIREKVEVTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGA 82
Cdd:TIGR01169   1 KLSKRYRAAREKVDRNKLYSLDEAIDLLKETATAKFDETVEVAIRLGIDPRKSDQQVRGSVVLPHGTGKTVRVAVFAKGE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   83 NAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVR 162
Cdd:TIGR01169  81 KAKEAKAAGADYVGSDDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPNPKTGTVTTDVAKAVKNAKKGQVE 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639337081  163 YRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQNTL 229
Cdd:TIGR01169 161 FRADKAGNIHAPIGKVSFDSEKLKENLEALLDAIKKAKPSGAKGQYIKNIALSSTMGPGIKVDLNSL 227
rpl1 CHL00129
ribosomal protein L1; Reviewed
1-230 1.63e-88

ribosomal protein L1; Reviewed


Pssm-ID: 177051  Cd Length: 229  Bit Score: 261.09  E-value: 1.63e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   1 MAKLTKRMRTIREKVEvTKDYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ 80
Cdd:CHL00129   1 MKKLSRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTN 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  81 GANAEAAKEAGAELVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQ 160
Cdd:CHL00129  80 EEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGK 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 161 VRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYLKKVTISTTMGAGVSVDQNTLS 230
Cdd:CHL00129 160 LEYRADKTGIVHVLFGKSNFTEEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229
Ribosomal_L1 pfam00687
Ribosomal protein L1p/L10e family; This family includes prokaryotic L1 and eukaryotic L10.
30-219 6.10e-72

Ribosomal protein L1p/L10e family; This family includes prokaryotic L1 and eukaryotic L10.


Pssm-ID: 459905  Cd Length: 197  Bit Score: 217.76  E-value: 6.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   30 LKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDLAELVK--- 105
Cdd:pfam00687   1 LKKHAKAKFDESVELALNLtGVDPRKADQRVRGTIVLPHGTGKTVRVCVFAKDPQAEEAKEAGADVVGGEDLKEKIKnfe 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  106 ---KGEMNFDVVVASPDAMRVVGQ-LGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFT 181
Cdd:pfam00687  81 akrKLAKDFDLFLADPDIMPLLGKlLGKILGPRGKMPNPKKGTVTKDVAKAVEEAKSGTVEFRVDKGGCIHVKVGKVSFT 160
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 639337081  182 AEQLQQNLESLIVALKKAKPSqaKGVYLKKVTISTTMG 219
Cdd:pfam00687 161 PEQLAENIEAVIDALVKKKPK--GGQNIKSIYLKTTMG 196
Ribosomal_L1 cd00403
Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of ...
23-224 2.64e-67

Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.


Pssm-ID: 238235  Cd Length: 208  Bit Score: 206.27  E-value: 2.64e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  23 INEAVALLKELA--TAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDL 100
Cdd:cd00403    1 LEEAIKALKKTSvkKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGEDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 101 AELVKKGEM-----NFDVVVASP-DAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKaGQVRYRNDKNGIIHTT 174
Cdd:cd00403   81 KKKIKNGEAkklakDFDLFLADPrIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAK-SSVEFRLDKGGCIHVP 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 639337081 175 IGKVDFTAEQLQQNLESLIVALKKAKPSqAKGVYLKKVTISTTMGAGVSV 224
Cdd:cd00403  160 VGKVSMSPEQLVENIEAVINALVKKLPS-KKGQNIKSIYLKTTMGPSLPI 208
rpl1P PRK04203
50S ribosomal protein L1P; Reviewed
22-224 4.92e-26

50S ribosomal protein L1P; Reviewed


Pssm-ID: 235254  Cd Length: 215  Bit Score: 100.70  E-value: 4.92e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  22 EINEAVALLKELA-TAKFVESVDVAVNL-GIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELV-GME 98
Cdd:PRK04203   6 KIEEAVKEALEEApKRNFTQSVDLIVNLkDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKGELALQAKEAGADYViTRE 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  99 DLAEL------VKKGEMNFDVVVASPDAMRVVGQ-LGQILGPRGLMPNPktgtVTPN--VAEAVKNAKAgQVRYRNDKNG 169
Cdd:PRK04203  86 ELEELggdkraAKKLANEYDFFIAEADLMPLIGRyLGPVLGPRGKMPTP----LPPNadIKPLVERLKN-TVRIRTKDQP 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 639337081 170 IIHTTIGKVDFTAEQLQQNLESLIVAL--KKAKPSQakgvYLKKVTISTTMGAGVSV 224
Cdd:PRK04203 161 TFHVRVGTEDMSPEELAENIDAVLNRIesKLEKGRQ----NIKSVYVKTTMGPAVKV 213
rplA_mito TIGR01170
ribosomal protein uL1, mitochondrial; This model represents the mitochondrial homolog of ...
21-159 9.75e-16

ribosomal protein uL1, mitochondrial; This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1 model. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273480  Cd Length: 141  Bit Score: 71.38  E-value: 9.75e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081   21 YEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQ-GANAEAAKEAGAELVGMED 99
Cdd:TIGR01170   1 YKVIKAFVYLKTKSISMYVPKQSVNLDIGLLMELGKESVQGMFSFPHPFGKEPKIAVFTKgASEVEEAREAGADYVGGDD 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639337081  100 LAELVKKGEMN-FDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAG 159
Cdd:TIGR01170  81 LIKKIEDGEIKpFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKKG 141
PTZ00029 PTZ00029
60S ribosomal protein L10a; Provisional
23-219 7.04e-10

60S ribosomal protein L10a; Provisional


Pssm-ID: 185405  Cd Length: 216  Bit Score: 57.06  E-value: 7.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  23 INEAVALLKELATAK---FVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMED 99
Cdd:PTZ00029   9 LRKAIAEILEGSEEKkrkFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKLGLDFMDIEG 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 100 L------AELVKKGEMNFDVVVASPDAMRvvgQLGQILGPrGLMPNPKTGTV---TPNVAEAVKNAKAgQVRYRNDKNGI 170
Cdd:PTZ00029  89 LkkfnknKKLVKKLAKKYDAFLASQSLLP---QIPRLLGP-GLNKAGKFPTLithNDDIEDKINELKS-SVKFQLKKVLC 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 639337081 171 IHTTIGKVDFTAEQLQQNLESLI---VALKKAKPSQAKGVYLKkvtisTTMG 219
Cdd:PTZ00029 164 LGVAVGNVEMTEEQLRQNIVLSInflVSLLKKNWQNIKTLHIK-----STMG 210
PTZ00225 PTZ00225
60S ribosomal protein L10a; Provisional
22-219 1.22e-04

60S ribosomal protein L10a; Provisional


Pssm-ID: 140252  Cd Length: 214  Bit Score: 41.96  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081  22 EINEAV-ALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPNGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDL 100
Cdd:PTZ00225   8 TLSEAIqAVLKVDKERKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKEGVPTMNQEEL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639337081 101 ------AELVKKGEMNFDVVVASPDAMRVVGQLgqiLGP--RGLMPNPKTGTVTPNVAEAVKNAKAgQVRYRNDKNGIIH 172
Cdd:PTZ00225  88 kklnknKKLVKKMCNQYDAFLCSESIIKTVPRL---VGPhmHRMGKFPTVCSPSESLPDKVVELRS-TVKFQLKKVLCLG 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 639337081 173 TTIGKVDFTAEQLQQNLE---SLIVALKKAKPSQAKGVYLKkvtisTTMG 219
Cdd:PTZ00225 164 TCVGHVEMTEEQLRQNVVmaiNFLVSLLKKNWQNLKSAYIK-----STMG 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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