|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS5_3 |
NF033580 |
IS5 family transposase; |
29-248 |
3.31e-89 |
|
IS5 family transposase;
Pssm-ID: 468097 [Multi-domain] Cd Length: 257 Bit Score: 264.44 E-value: 3.31e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 29 DHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELFRALSRDA--DMDWVFIDGSIVRAHQHSCGAR 106
Cdd:NF033580 30 DDREVLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAGVWERLFEALLAELriDWERLAIDSTIVRAHQSAAGAK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 107 TA---DNESIGKSRGGNSTKIHLAVDSGGLPVYYELSCGNTHDIVHAESLVANCPTSNM-----VVADKGYDSEKLRAFV 178
Cdd:NF033580 110 KTgpnGYQAIGRSKGGLKTKIHIAVDALGLPLAFVLTGANVHDSKGALPLLDGLPVLRPprpkhLLADKGYDSDALRAAL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 179 RDNNATPVIPRKGNSLvgNEDIDWCMYKYRHLVENAFGRIKQYRGIATRYEKLERNYHSMLALAFTMMWL 248
Cdd:NF033580 190 RERGAVPVIPRRRNRL--RPAYDFRLYKKRWVVERTFAWLKRFRRLATRYEKLARNFLAFVHLACIRIWL 257
|
|
| COG3293 |
COG3293 |
Transposase [Mobilome: prophages, transposons]; |
5-100 |
1.50e-25 |
|
Transposase [Mobilome: prophages, transposons];
Pssm-ID: 442522 [Multi-domain] Cd Length: 98 Bit Score: 96.20 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 5 MLTDGTWNVLSKVMYLSGRIYNKP-DHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELFRALSRd 83
Cdd:COG3293 8 DLTDAQWARIEPLLPGPDKGGRPRhDDREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLGRWERLAEALLA- 86
|
90
....*....|....*..
gi 639340887 84 admdwVFIDGSIVRAHQ 100
Cdd:COG3293 87 -----AVIDASSVRAHQ 98
|
|
| DUF4096 |
pfam13340 |
Putative transposase of IS4/5 family (DUF4096); |
6-77 |
8.65e-24 |
|
Putative transposase of IS4/5 family (DUF4096);
Pssm-ID: 433130 Cd Length: 76 Bit Score: 91.01 E-value: 8.65e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639340887 6 LTDGTWNVLSKVMYLSGR----IYNKPDHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELF 77
Cdd:pfam13340 1 LTDEQWARIEPLLPPPKRrgdgRPRKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAGVWERLH 76
|
|
| transpos_IS5_2 |
NF033579 |
IS5 family transposase; |
123-238 |
8.29e-15 |
|
IS5 family transposase;
Pssm-ID: 468096 [Multi-domain] Cd Length: 287 Bit Score: 72.32 E-value: 8.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 123 KIHLAVDSGGLPV-YYELSCGNTHDIVHAESLVANCPT-SNMVVADKGYDSEKLRAFVRDNNATPVIP-RKGNSLVG--- 196
Cdd:NF033579 141 KVHLAVDVKTGEIlAVEVTTNKVHDAKVLPDLLRQIPEdIDSVLADGAYDTKKCHEAIRERGARPLIPpRKNARLWKegk 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 639340887 197 --NEDID------------WCMYKYRHLVENAFGRIKQYRGiatryEKLE-RNYHSM 238
Cdd:NF033579 221 arNAAIReirrlgrelwkkWSGYHRRSLVETAFSRLKRLLG-----ERLRaRNFDRQ 272
|
|
| transpos_IS5_4 |
NF033581 |
IS5 family transposase; |
44-244 |
4.39e-14 |
|
IS5 family transposase;
Pssm-ID: 468098 [Multi-domain] Cd Length: 284 Bit Score: 70.04 E-value: 4.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 44 GIPWRDLPSDfgrwSAIYRRFNLWSKKGILNELFRALSRDADM------DWVFIDGSIVRA-HQHSCGARTADNESIGKS 116
Cdd:NF033581 70 GLSEDDVPDA----STIWRFRELLEEHLLAEALFAEVNRQLLAkgllskEGVIVDATLIPApRSPKKRDKKRDPDMRQTK 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 117 RGGNST---KIHLAVDS-GGLPVYYELSCGNTHDIVHAESLVANcpTSNMVVADKGYDSEKLRAFVRDNNATPVIPRKG- 191
Cdd:NF033581 146 KGKKSRhgyKAHIGVDPkSGLVHSLVTTPANVHDSRAAKELLHG--DEKTVYADKGYDGDEGYQGLREAGVKPHIPRKKs 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639340887 192 -NSLVGNEDIdwCMYKY----RHLVENAFGRIKQYRGIA-TRYEKLERNYHSMLALAFT 244
Cdd:NF033581 224 rNRPLTEAQK--RRNRLkskiRARVEHVFGVLKRFFGLSkVRYRGLKRVGARFNLIAAL 280
|
|
| transpos_IS982 |
NF033520 |
IS982 family transposase; Currently, there are 46 seed sequences in this family. |
61-236 |
1.84e-11 |
|
IS982 family transposase; Currently, there are 46 seed sequences in this family.
Pssm-ID: 468056 [Multi-domain] Cd Length: 243 Bit Score: 62.25 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 61 YRRFN------LWSKKGILNELFRALSRDADMdWVFIDGS------IVRAHQHSCGARTADnesIGKSRGGNST----KI 124
Cdd:NF033520 41 YSRFNrrcrrlLPLIEAIRQELAKKTKSEETG-IAIIDSTpipvchNKRIKRHKVFKGIAD---RGYCASKKGWfygfKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 125 HLAVDSGGLPVYYELSCGNTHDIVHAESLVANCPTSNMVVADKGYDSEKLRAFVRDNNATPVIPRKGNSLVGNEDI-DWC 203
Cdd:NF033520 117 HLLVNLSGEIVSYVITPANVHDRKVLEDLLLTKPLPGKLFGDKGYISKELQEKLKEQGITLITPLRKNMKEKLEKPnDKL 196
|
170 180 190
....*....|....*....|....*....|...
gi 639340887 204 MYKYRHLVENAFGRIKQYRGIatryeklERNYH 236
Cdd:NF033520 197 LLRKRKRIETVFSQLKNQFGI-------EHSRA 222
|
|
| transpos_IS4_1 |
NF033592 |
IS4 family transposase; |
58-169 |
1.38e-06 |
|
IS4 family transposase;
Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 48.41 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 58 SAIYRRFNLwSKKGILNELFRALSR-------DADMDWVF-----IDGSIVRAHQHSCGARTAdnesigkSRGGNST--- 122
Cdd:NF033592 67 SALSKARKR-LPVEFLKELFERLLAqlqlgqlLPRKLWRGlrvlaVDGTTIRLPDSLENWAPG-------RGGKNSFpgv 138
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 639340887 123 KIHLAVD-SGGLPVYYELSCGNTHDIVHAESLVANCPTSNMVVADKGY 169
Cdd:NF033592 139 KLHLLYDlLSGLPLDAAITPGKTHERTLLRQLLETLPPGDLLLFDRGY 186
|
|
| transpos_IS1182 |
NF033551 |
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ... |
123-188 |
6.47e-06 |
|
IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.
Pssm-ID: 468080 [Multi-domain] Cd Length: 437 Bit Score: 46.55 E-value: 6.47e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639340887 123 KIHLAVDS-GGLPVYYELSCGNTHD----IVHAESLVANC---PTSnmVVADKGYDSEKLRAFVRDNNATPVIP 188
Cdd:NF033551 219 NVQIAVDTeSGLIVAVEVTPGNGHDggqlIPLLEQVEERLgllPEE--VLADAGYGSEENLEALEERGIEPVIP 290
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS5_3 |
NF033580 |
IS5 family transposase; |
29-248 |
3.31e-89 |
|
IS5 family transposase;
Pssm-ID: 468097 [Multi-domain] Cd Length: 257 Bit Score: 264.44 E-value: 3.31e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 29 DHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELFRALSRDA--DMDWVFIDGSIVRAHQHSCGAR 106
Cdd:NF033580 30 DDREVLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAGVWERLFEALLAELriDWERLAIDSTIVRAHQSAAGAK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 107 TA---DNESIGKSRGGNSTKIHLAVDSGGLPVYYELSCGNTHDIVHAESLVANCPTSNM-----VVADKGYDSEKLRAFV 178
Cdd:NF033580 110 KTgpnGYQAIGRSKGGLKTKIHIAVDALGLPLAFVLTGANVHDSKGALPLLDGLPVLRPprpkhLLADKGYDSDALRAAL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 179 RDNNATPVIPRKGNSLvgNEDIDWCMYKYRHLVENAFGRIKQYRGIATRYEKLERNYHSMLALAFTMMWL 248
Cdd:NF033580 190 RERGAVPVIPRRRNRL--RPAYDFRLYKKRWVVERTFAWLKRFRRLATRYEKLARNFLAFVHLACIRIWL 257
|
|
| COG3293 |
COG3293 |
Transposase [Mobilome: prophages, transposons]; |
5-100 |
1.50e-25 |
|
Transposase [Mobilome: prophages, transposons];
Pssm-ID: 442522 [Multi-domain] Cd Length: 98 Bit Score: 96.20 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 5 MLTDGTWNVLSKVMYLSGRIYNKP-DHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELFRALSRd 83
Cdd:COG3293 8 DLTDAQWARIEPLLPGPDKGGRPRhDDREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLGRWERLAEALLA- 86
|
90
....*....|....*..
gi 639340887 84 admdwVFIDGSIVRAHQ 100
Cdd:COG3293 87 -----AVIDASSVRAHQ 98
|
|
| DUF4096 |
pfam13340 |
Putative transposase of IS4/5 family (DUF4096); |
6-77 |
8.65e-24 |
|
Putative transposase of IS4/5 family (DUF4096);
Pssm-ID: 433130 Cd Length: 76 Bit Score: 91.01 E-value: 8.65e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639340887 6 LTDGTWNVLSKVMYLSGR----IYNKPDHRKTLEGILYKMRTGIPWRDLPSDFGRWSAIYRRFNLWSKKGILNELF 77
Cdd:pfam13340 1 LTDEQWARIEPLLPPPKRrgdgRPRKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAGVWERLH 76
|
|
| DDE_Tnp_1 |
pfam01609 |
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
89-246 |
7.81e-17 |
|
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.
Pssm-ID: 376573 [Multi-domain] Cd Length: 196 Bit Score: 76.13 E-value: 7.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 89 VFIDGSIVRAHQHSCGARTADNEsiGKSRGGnsTKIHLAVD-SGGLPVYYELSCGNTHDIVHAESLVANCPTSN--MVVA 165
Cdd:pfam01609 7 LIIDSTTIRTPGTGEDARWGYDG--GKRRYG--YKLHIAVDtRTGLILAVVLTPGNVHDSKGLLQLLDELRRRKgrLVLA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 166 DKGYDSEKLRAFVRDNNATPVIPRKGNSLVGNEDID--------------------------------WCMYKYRHLVEN 213
Cdd:pfam01609 83 DAGYGGKELLDKLEEKGVDYLIRLKKNAKLIDDKRRgrlrkhgklkiltkvdklkgrvnstllsaetlAELYRRRWQIER 162
|
170 180 190
....*....|....*....|....*....|....
gi 639340887 214 AFGRIKQ-YRGIATRYEKLERNYHSMLALAFTMM 246
Cdd:pfam01609 163 VFKWLKRvFGLDRLRYRGLNAVEAELLLLALAYN 196
|
|
| transpos_IS5_2 |
NF033579 |
IS5 family transposase; |
123-238 |
8.29e-15 |
|
IS5 family transposase;
Pssm-ID: 468096 [Multi-domain] Cd Length: 287 Bit Score: 72.32 E-value: 8.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 123 KIHLAVDSGGLPV-YYELSCGNTHDIVHAESLVANCPT-SNMVVADKGYDSEKLRAFVRDNNATPVIP-RKGNSLVG--- 196
Cdd:NF033579 141 KVHLAVDVKTGEIlAVEVTTNKVHDAKVLPDLLRQIPEdIDSVLADGAYDTKKCHEAIRERGARPLIPpRKNARLWKegk 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 639340887 197 --NEDID------------WCMYKYRHLVENAFGRIKQYRGiatryEKLE-RNYHSM 238
Cdd:NF033579 221 arNAAIReirrlgrelwkkWSGYHRRSLVETAFSRLKRLLG-----ERLRaRNFDRQ 272
|
|
| transpos_IS5_4 |
NF033581 |
IS5 family transposase; |
44-244 |
4.39e-14 |
|
IS5 family transposase;
Pssm-ID: 468098 [Multi-domain] Cd Length: 284 Bit Score: 70.04 E-value: 4.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 44 GIPWRDLPSDfgrwSAIYRRFNLWSKKGILNELFRALSRDADM------DWVFIDGSIVRA-HQHSCGARTADNESIGKS 116
Cdd:NF033581 70 GLSEDDVPDA----STIWRFRELLEEHLLAEALFAEVNRQLLAkgllskEGVIVDATLIPApRSPKKRDKKRDPDMRQTK 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 117 RGGNST---KIHLAVDS-GGLPVYYELSCGNTHDIVHAESLVANcpTSNMVVADKGYDSEKLRAFVRDNNATPVIPRKG- 191
Cdd:NF033581 146 KGKKSRhgyKAHIGVDPkSGLVHSLVTTPANVHDSRAAKELLHG--DEKTVYADKGYDGDEGYQGLREAGVKPHIPRKKs 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639340887 192 -NSLVGNEDIdwCMYKY----RHLVENAFGRIKQYRGIA-TRYEKLERNYHSMLALAFT 244
Cdd:NF033581 224 rNRPLTEAQK--RRNRLkskiRARVEHVFGVLKRFFGLSkVRYRGLKRVGARFNLIAAL 280
|
|
| transpos_IS982 |
NF033520 |
IS982 family transposase; Currently, there are 46 seed sequences in this family. |
61-236 |
1.84e-11 |
|
IS982 family transposase; Currently, there are 46 seed sequences in this family.
Pssm-ID: 468056 [Multi-domain] Cd Length: 243 Bit Score: 62.25 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 61 YRRFN------LWSKKGILNELFRALSRDADMdWVFIDGS------IVRAHQHSCGARTADnesIGKSRGGNST----KI 124
Cdd:NF033520 41 YSRFNrrcrrlLPLIEAIRQELAKKTKSEETG-IAIIDSTpipvchNKRIKRHKVFKGIAD---RGYCASKKGWfygfKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 125 HLAVDSGGLPVYYELSCGNTHDIVHAESLVANCPTSNMVVADKGYDSEKLRAFVRDNNATPVIPRKGNSLVGNEDI-DWC 203
Cdd:NF033520 117 HLLVNLSGEIVSYVITPANVHDRKVLEDLLLTKPLPGKLFGDKGYISKELQEKLKEQGITLITPLRKNMKEKLEKPnDKL 196
|
170 180 190
....*....|....*....|....*....|...
gi 639340887 204 MYKYRHLVENAFGRIKQYRGIatryeklERNYH 236
Cdd:NF033520 197 LLRKRKRIETVFSQLKNQFGI-------EHSRA 222
|
|
| DDE_Tnp_1_2 |
pfam13586 |
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
163-248 |
4.06e-10 |
|
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.
Pssm-ID: 463928 [Multi-domain] Cd Length: 90 Bit Score: 55.12 E-value: 4.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 163 VVADKGYDSEKLRAFVRDNNATPVIP---RKGNSLVGNEDIDWCMYKYRHLVENAFGRIKQYRGIATRYEKLERNYHSML 239
Cdd:pfam13586 1 VHVDRGYRTRHNREWLKERGIRASGPplgRPAKNKAQEKKQAREDEIARNVIEGKFGWFKRRRSLAKRYEKLASTFEGAI 80
|
....*....
gi 639340887 240 ALAFTMMWL 248
Cdd:pfam13586 81 ALTFLVINL 89
|
|
| IS5 |
COG3039 |
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons]; |
123-244 |
1.93e-09 |
|
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
Pssm-ID: 442273 [Multi-domain] Cd Length: 316 Bit Score: 56.80 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 123 KIHLAVDSG-GLPVYYELSCGNTHDIVHAESLVANcpTSNMVVADKGYDSEKLRAFVRDNNATPVI---PRKGNSLVGNE 198
Cdd:COG3039 178 KAHIGVDADsGLIHTVVTTAANVHDVTHLDELLHG--EETDVYADKGYQGAEKREELKARGIRWHIarkPGRNKPLSELQ 255
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 639340887 199 D-IDWCMYKYRHLVENAFGRIK-QYRGIATRYEKLERNYHSMLALAFT 244
Cdd:COG3039 256 KrRNRRKAKVRAKVEHPFGVIKrLFGYKKVRYRGLAKNTAQLFLLAAL 303
|
|
| transpos_IS4_1 |
NF033592 |
IS4 family transposase; |
58-169 |
1.38e-06 |
|
IS4 family transposase;
Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 48.41 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 58 SAIYRRFNLwSKKGILNELFRALSR-------DADMDWVF-----IDGSIVRAHQHSCGARTAdnesigkSRGGNST--- 122
Cdd:NF033592 67 SALSKARKR-LPVEFLKELFERLLAqlqlgqlLPRKLWRGlrvlaVDGTTIRLPDSLENWAPG-------RGGKNSFpgv 138
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 639340887 123 KIHLAVD-SGGLPVYYELSCGNTHDIVHAESLVANCPTSNMVVADKGY 169
Cdd:NF033592 139 KLHLLYDlLSGLPLDAAITPGKTHERTLLRQLLETLPPGDLLLFDRGY 186
|
|
| transpos_IS1182 |
NF033551 |
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ... |
123-188 |
6.47e-06 |
|
IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.
Pssm-ID: 468080 [Multi-domain] Cd Length: 437 Bit Score: 46.55 E-value: 6.47e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639340887 123 KIHLAVDS-GGLPVYYELSCGNTHD----IVHAESLVANC---PTSnmVVADKGYDSEKLRAFVRDNNATPVIP 188
Cdd:NF033551 219 NVQIAVDTeSGLIVAVEVTPGNGHDggqlIPLLEQVEERLgllPEE--VLADAGYGSEENLEALEERGIEPVIP 290
|
|
| COG5421 |
COG5421 |
Transposase [Mobilome: prophages, transposons]; |
126-233 |
7.90e-05 |
|
Transposase [Mobilome: prophages, transposons];
Pssm-ID: 444174 [Multi-domain] Cd Length: 490 Bit Score: 43.42 E-value: 7.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 126 LAVDSGGLPVYYELSCGNTHDIVHAESLVAN-----CPTSNMVVADKGYDSEKLRAFVRDNNA---TPVIPRKGNSLVGN 197
Cdd:COG5421 157 LLVDRDGIPLAYEVFPGNTADVKTLKPVLEKlkkrfGLKKVILVADRGLYSEDNLALLEEAGLkfiTRLPLKEAKELLKD 236
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 639340887 198 EDIDWCMYKYRHLVENA-----FGRIKQY-----------RGIATRYEKLER 233
Cdd:COG5421 237 AILDPSNFEEGEGYRVYekeveYGGGEQRlvvvysparakKDRKTREKKLEK 288
|
|
| DDE_Tnp_4 |
pfam13359 |
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
117-220 |
9.85e-03 |
|
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Pssm-ID: 463855 [Multi-domain] Cd Length: 158 Bit Score: 35.72 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639340887 117 RGGNSTKIHLAVDSGGLPVYYELSC-GNTHDIVHAES------LVANCPTSNMVVADKGYDseklrafVRDNNATPVIPR 189
Cdd:pfam13359 25 KHHNTLKVLIVVTPNGKIIFVSKGYpGSVSDKSILENsgllkaLNLAFGPGDYILADKGFP-------ISDWLLVPYKKP 97
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90 100 110
....*....|....*....|....*....|....*.
gi 639340887 190 KGNSL-----VGNEDIDwcmyKYRHLVENAFGRIKQ 220
Cdd:pfam13359 98 GGAQLspeevEFNRRIA----SARIHVERVIGRLKG 129
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