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Conserved domains on  [gi|639348774|ref|WP_024602445|]
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MULTISPECIES: iron ABC transporter permease [Pseudoalteromonas]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 35-346 1.06e-98

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 294.29  E-value: 1.06e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  35 SIGYGAAGWDWRLAIAWLAPEHFSQFDAlqiNVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAA 114
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTAD---LIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 115 MVAVAFIALSAQFNFnaqHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSALRL 194
Cdd:COG0609   78 LGAVLAIVLGGGLSA---LGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 195 INYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLI 274
Cdd:COG0609  155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639348774 275 GFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNK 346
Cdd:COG0609  235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 35-346 1.06e-98

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 294.29  E-value: 1.06e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  35 SIGYGAAGWDWRLAIAWLAPEHFSQFDAlqiNVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAA 114
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTAD---LIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 115 MVAVAFIALSAQFNFnaqHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSALRL 194
Cdd:COG0609   78 LGAVLAIVLGGGLSA---LGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 195 INYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLI 274
Cdd:COG0609  155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639348774 275 GFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNK 346
Cdd:COG0609  235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 28-344 2.65e-76

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 237.04  E-value: 2.65e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774   28 IFALALLSIGYGAAGWDWRLAIAWLapehFSQFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSII 107
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSAL----LGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSIL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  108 GISAGAAMVAVAFIALsaqFNFNAQHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYA 187
Cdd:pfam01032  78 GISSGAALGAVLAILL---GGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  188 DDSALRLINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAV 267
Cdd:pfam01032 155 NPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAAS 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639348774  268 VALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIK 344
Cdd:pfam01032 235 VAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
btuC PRK09535
cobalamin ABC transporter permease BtuC;
47-345 6.09e-68

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 217.70  E-value: 6.09e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  47 LAIAWLAPEHFSQFDALQInVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQ 126
Cdd:PRK09535  71 PDLEYASPFSFAVPETAQT-IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLA 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 127 FNFNaqhyLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSaLRLINYWTMGSLGGA 206
Cdd:PRK09535 150 VPFG----LQAAAFAGALVAAFGVYAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES-LRRAVYWLMGHLHGS 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 207 SWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIAR 286
Cdd:PRK09535 225 TWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMR 304

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 639348774 287 LMVGPHLRNMLPLCMLLGVIVLLLSDWLARLvvMPAELPIGIITALLGAPLFIYLIIKN 345
Cdd:PRK09535 305 LLVGPDHRILLPTSALAGASFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYLLRTR 361
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 62-347 6.52e-53

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 177.35  E-value: 6.52e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774   62 ALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQFnfnaqhYLPYASFL 141
Cdd:TIGR03869  43 RLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV------LLPVAAFA 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  142 GALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFY-ADDSALRLINYWTMGSLGGASWDNIKQASPLLLL 220
Cdd:TIGR03869 117 GALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLV 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  221 SLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLC 300
Cdd:TIGR03869 197 VGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVS 276

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 639348774  301 MLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNKR 347
Cdd:TIGR03869 277 ALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRS 323
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-342 4.91e-45

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 155.02  E-value: 4.91e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  76 FVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALsaqFNFNAQHYLPYASFLGALSVTSLVYLVSK 155
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLL---GIGLSNYALGAFAFAGALAIALLVLLLAS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 156 QqKQININTLILVGVAINALAFAVIGLLSFYADDSALRlINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLL 235
Cdd:cd06550   78 R-GGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQD-LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLL 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 236 LIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLA 315
Cdd:cd06550  156 TFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLS 235

                        250       260
                 ....*....|....*....|....*..
gi 639348774 316 RLvVMPAELPIGIITALLGAPLFIYLI 342
Cdd:cd06550  236 RT-LLPSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 35-346 1.06e-98

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 294.29  E-value: 1.06e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  35 SIGYGAAGWDWRLAIAWLAPEHFSQFDAlqiNVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAA 114
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTAD---LIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 115 MVAVAFIALSAQFNFnaqHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSALRL 194
Cdd:COG0609   78 LGAVLAIVLGGGLSA---LGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 195 INYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLI 274
Cdd:COG0609  155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639348774 275 GFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNK 346
Cdd:COG0609  235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 28-344 2.65e-76

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 237.04  E-value: 2.65e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774   28 IFALALLSIGYGAAGWDWRLAIAWLapehFSQFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSII 107
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSAL----LGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSIL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  108 GISAGAAMVAVAFIALsaqFNFNAQHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYA 187
Cdd:pfam01032  78 GISSGAALGAVLAILL---GGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  188 DDSALRLINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAV 267
Cdd:pfam01032 155 NPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAAS 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639348774  268 VALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIK 344
Cdd:pfam01032 235 VAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
btuC PRK09535
cobalamin ABC transporter permease BtuC;
47-345 6.09e-68

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 217.70  E-value: 6.09e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  47 LAIAWLAPEHFSQFDALQInVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQ 126
Cdd:PRK09535  71 PDLEYASPFSFAVPETAQT-IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLA 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 127 FNFNaqhyLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSaLRLINYWTMGSLGGA 206
Cdd:PRK09535 150 VPFG----LQAAAFAGALVAAFGVYAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES-LRRAVYWLMGHLHGS 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 207 SWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIAR 286
Cdd:PRK09535 225 TWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMR 304

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 639348774 287 LMVGPHLRNMLPLCMLLGVIVLLLSDWLARLvvMPAELPIGIITALLGAPLFIYLIIKN 345
Cdd:PRK09535 305 LLVGPDHRILLPTSALAGASFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYLLRTR 361
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 18-348 1.34e-64

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 207.78  E-value: 1.34e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  18 HKWMLLSYGCIFALALLSIGYGAAgwdwrlaiaWLAPEHFsqFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALC 97
Cdd:COG4139   12 RRWLLLLLLLLLLLFVLSLCAGEV---------WIPPTQW--LSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  98 RNPLADPSIIGISAGAAMVAVAFIALSAQFnfnaqhyLPY-----ASFLGALSVTSLVYLVSKqqKQININTLILVGVAI 172
Cdd:COG4139   81 ENPLAEPGLLGISNGAGVGLVLVVLLGGGL-------LPPwllslAAIAGALLVTLLLLAFAR--RRLSNARLLLIGVAL 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 173 NALAFAVIGLLSFYADDSALRLINYWTMGSLGGASWdniKQASPLLLLSLIGLW--RLKEPMNLLLIGESQAQYLGVDTS 250
Cdd:COG4139  152 GIICSAIMTWAVYFSSSLDLRQLMYWMMGSFGGVDW---RQLWLLLALLPVLLWlcLQGKPLNLLLLGENQARQLGLSVH 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 251 KLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIIT 330
Cdd:COG4139  229 RWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVT 308

                        330
                 ....*....|....*...
gi 639348774 331 ALLGAPLFIYLIIKNKRD 348
Cdd:COG4139  309 ATLGAPVFIWLLLRRRKI 326
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 51-347 1.12e-61

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 200.18  E-value: 1.12e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  51 WLAPEHFsqFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQFNfn 130
Cdd:PRK03784  39 WISPGDW--LSPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLL-- 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 131 AQHYLPYASFLGALSVTsLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSALRLINYWTMGSLGGASWdn 210
Cdd:PRK03784 115 PPWALSLCAIAGALLIT-LILLRFARRHRLSTSRLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDW-- 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 211 iKQASPLLLLSLIGLW--RLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLM 288
Cdd:PRK03784 192 -RQSWLMLALLPVLIWlcCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLC 270

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 639348774 289 VGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNKR 347
Cdd:PRK03784 271 GLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
20-347 2.35e-53

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 186.20  E-value: 2.35e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  20 WMLLSYGCIFALAL---LSIGYGAAGWDWRLAIAWLApehfsqfdalqinvVTQIRLPRFVLAVMVGLVLAQTGAATQAL 96
Cdd:PRK10577 356 AWLLALGLLLLLALvvaLSFGRDAHGWNWLSGQLLDA--------------LLPLRLPRLLAALLAGAMLAVAGTLLQRL 421

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  97 CRNPLADPSIIGISAGAAMVAVAFIALSAQFNFnaqHYLPYASFLGALSVTSLVYLVSKQQkQININTLILVGVAINALA 176
Cdd:PRK10577 422 TRNPLASPEVLGISSGAGLGVVLALFLVPGAGF---GWLLAAALLGALAALALILLLARRG-GFAPERLLLTGIALSALF 497

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 177 FAVIGLLSFYADDSALRLINyWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYV 256
Cdd:PRK10577 498 TALIQLLLASGDPRAAQLLT-WLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLAL 576

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 257 IILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAP 336
Cdd:PRK10577 577 LLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAP 656

                        330
                 ....*....|.
gi 639348774 337 LFIYLIIKNKR 347
Cdd:PRK10577 657 YFLWLLRRSRR 667
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 62-347 6.52e-53

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 177.35  E-value: 6.52e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774   62 ALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQFnfnaqhYLPYASFL 141
Cdd:TIGR03869  43 RLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV------LLPVAAFA 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  142 GALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFY-ADDSALRLINYWTMGSLGGASWDNIKQASPLLLL 220
Cdd:TIGR03869 117 GALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLV 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  221 SLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLC 300
Cdd:TIGR03869 197 VGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVS 276

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 639348774  301 MLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNKR 347
Cdd:TIGR03869 277 ALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRS 323
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 28-347 9.87e-51

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 172.23  E-value: 9.87e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  28 IFALALLSIGYGAAGWDWRLAIAWLapehFSQFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSII 107
Cdd:COG4779   33 LLALAVLALTLGDYPLSPGDVLRAL----LGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPDII 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 108 GISAGAAMVAVAFIALsaqfnFNAQHY-LPYASFLGALSVTSLVYLVSKQQkQININTLILVGVAINALAFAVIGLLSFY 186
Cdd:COG4779  109 GITAGASAGAVAAIVV-----LGGSGLaVALGALAGGLATALLVYLLAWRG-GVSGYRLILVGIGVSAMLTAVNSYLLTR 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 187 ADDSALRLINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGA 266
Cdd:COG4779  183 ADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAV 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 267 VVALTGLIGFVGLVVPHIARLMVGPHlRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKNK 346
Cdd:COG4779  263 ATAAAGPIAFVALAAPQIARRLTRSP-GPPLLPSALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLWLLIREN 341


                 .
gi 639348774 347 R 347
Cdd:COG4779  342 R 342
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
67-341 1.02e-47

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 163.71  E-value: 1.02e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  67 VVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALSAQFnFNAQHYLPYASFLGALSV 146
Cdd:PRK11228  46 LVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTP-FAGYSLAFIAACGGGLSW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 147 TSLVYLVSKQQKQININTLILVGVAINALAFAVIGLLSFYADDSALRlINYWTMGSLGGASWDNIKQASPLLLLSLIGLW 226
Cdd:PRK11228 125 LLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDHAYG-IFYWLAGGVSHARWQEVWQLLPFVVTAVPVVL 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 227 RLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVI 306
Cdd:PRK11228 204 LLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGAT 283

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 639348774 307 VLLLSDWLARLVVMPAELPIGIITALLGAPLFIYL 341
Cdd:PRK11228 284 LMLLADLLARALAFPGELPAGAVLALIGAPCFVWL 318
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-342 4.91e-45

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 155.02  E-value: 4.91e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  76 FVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALsaqFNFNAQHYLPYASFLGALSVTSLVYLVSK 155
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLL---GIGLSNYALGAFAFAGALAIALLVLLLAS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 156 QqKQININTLILVGVAINALAFAVIGLLSFYADDSALRlINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLL 235
Cdd:cd06550   78 R-GGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQD-LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLL 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 236 LIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLA 315
Cdd:cd06550  156 TFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLS 235

                        250       260
                 ....*....|....*....|....*..
gi 639348774 316 RLvVMPAELPIGIITALLGAPLFIYLI 342
Cdd:cd06550  236 RT-LLPSELPVGPVTALLGAPYFLYLL 261
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
30-346 6.79e-44

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 153.66  E-value: 6.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  30 ALALLSIGYGAAGWDWRLAIAWLAPEHFSQFdalqinVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGI 109
Cdd:PRK09777  15 GCALLSLRMGVIPLPWRALLTDWQAGDEHYY------VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGV 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 110 SAGAAMVAVAFIALSAQFNFnaqHYLPYASFLGALSVTSLVYLVSKQQKQINintLILVGVAINALAFAVIGLLSFyadd 189
Cdd:PRK09777  89 NHAASLASVGALLLFPSLPV---MWLPLLAFIGGMAGLILLKMLAGTHQPMK---LALTGVALSALWASLTDYLML---- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 190 SALRLIN---YWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIIL-VALGVG 265
Cdd:PRK09777 159 SRPQDINnalLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLaVALTAT 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 266 AVvALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIYLIIKN 345
Cdd:PRK09777 239 GV-AACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRM 317


                 .
gi 639348774 346 K 346
Cdd:PRK09777 318 R 318
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
30-342 2.76e-42

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 155.77  E-value: 2.76e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  30 ALALLSIGYGAAGWDWRLAIA-WLAPEHFSQFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIG 108
Cdd:PRK10577  19 LLLLLALALTLTQLSAALPLSqWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 109 ISAGA--AMVAVA--FIALSAQFNFnaqhylpYASFLGALSVTSLVYLVSkQQKQININTLILVGVAINALAFAVIGLLS 184
Cdd:PRK10577  99 VAAGAqlALVLATlfAPALLALASQ-------LAAFAGGLLAAALVFALA-GGKRLSPLRLVLAGMVVSLYLGALTTLLL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 185 FYADDSALRLInYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGV 264
Cdd:PRK10577 171 LFNEQYLQGLF-LWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLS 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 265 GAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGVIVLLLSDWLARLV--VMPAELPIGIITALLGAPLFIYLI 342
Cdd:PRK10577 250 AAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagVGGELLPTGAVTALIGAPLLLWLL 329
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
67-347 2.62e-38

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 139.46  E-value: 2.62e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  67 VVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNPLADPSIIGISAGAAMVAVAFIALsaqFNFNAQHYLPYASFLGALSV 146
Cdd:PRK10441  55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAAL---FGYSSAQEQLAMAFAGALVA 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 147 TSLVYLVSKQ-QKQININTLILVGVAINALAFAVIGLLSFYADDSALRLiNYWTMGSLGGASWDNIKQASPLLLLSLIGL 225
Cdd:PRK10441 132 SLIVAFTGSQgGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQL-RFWQAGSLDIRNLHTLKVVLIPVLIAGATA 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 226 WRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILVALGVGAVVALTGLIGFVGLVVPHIARLMVGPHLRNMLPLCMLLGV 305
Cdd:PRK10441 211 LLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATP 290

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 639348774 306 IVLLLSDWLARLVVmPAELPIGIITALLGAPLFIYLIIKNKR 347
Cdd:PRK10441 291 ALLLFADIIGRLLV-PGELRVSVVSAFIGAPVLIFLVRRKTR 331
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
21-347 7.80e-31

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 119.04  E-value: 7.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774  21 MLLSYGCIfALALLSIGYGAAGWDWRLAIAWLapehFSQFDALQINVVTQIRLPRFVLAVMVGLVLAQTGAATQALCRNP 100
Cdd:PRK10440  13 LLLLAACV-AAGLWGLRSGAVTLETSQVFAAL----MGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNP 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 101 LADPSIIGISAGAAMVAVAFIALsaqfnFNAQHYLPYASFLGALSVTSLVYLVSKQQKQININTLILVGVAINALAFAVI 180
Cdd:PRK10440  88 LGSPDVMGFNTGAWSGVLVAMVL-----FGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 181 GLLSFYADDSALRLINYWTMGSLGGASWDNIKQASPLLLLSLIGLWRLKEPMNLLLIGESQAQYLGVDTSKLKLYVIILV 260
Cdd:PRK10440 163 TWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVA 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639348774 261 ALGVGAVVALTGLIGFVGLVVPHIARLMVGPHlRNMLPLCMLLGVIVLLLSDWLARLVVMPAELPIGIITALLGAPLFIY 340
Cdd:PRK10440 243 VVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIV 321


                 ....*..
gi 639348774 341 LIIKNKR 347
Cdd:PRK10440 322 LLIQESR 328
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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