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Conserved domains on  [gi|639351759|ref|WP_024603099|]
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MULTISPECIES: ATP-binding protein [unclassified Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10815 super family cl32585
two-component system sensor histidine kinase PhoQ;
70-439 3.66e-61

two-component system sensor histidine kinase PhoQ;


The actual alignment was detected with superfamily member PRK10815:

Pssm-ID: 182754 [Multi-domain]  Cd Length: 485  Bit Score: 206.41  E-value: 3.66e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  70 SILTPELNNLNSDTYAMIYRD---------DVPiwHSESAVNVNFV--PQYIEPKAGAADFRRVVYNNTAYwQLSLTVIL 138
Cdd:PRK10815  69 SIELPENLDLNSPTLVLIYDEngkllwrqrDVP--WLEKMIQPEWLkkNGFHEIETDVNDSSLLLSGDHSA-QQQLKEVR 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 139 NNIDQSEQARFILLKRNDALLRL-------MDGFKQTL----VDWMFIMGIAIAGL-MAIGFI-----WSARPLQRLDKE 201
Cdd:PRK10815 146 EDDDDAEMTHSVAVNVYPATSRLpkltivvVDTIPQELqrsyMVWSWFSYVLLANLlLVIPLLwlaawWSLRPIEALAKQ 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 202 IKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYRASLSDLAHALKTPLAVLKSSPLA---------NDADA- 271
Cdd:PRK10815 226 VRELEEGEREQLDPNPPRELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSlrsgkqmsvEQAEPi 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 272 -QEQLDRINVMIEHQLKRAA--TGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGN 348
Cdd:PRK10815 306 mLEQISRISQQIGYYLHRASmrSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEITFVGEKNDFMEVMGN 385
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 349 LIDNACKACRSQVSIDVSQA-KTLSISICDDGPGIQPDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHS 427
Cdd:PRK10815 386 VLDNACKYCLEFVEISARQTdEHLHIVVEDDGPGIPESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDS 465
                        410
                 ....*....|..
gi 639351759 428 QrLGGAKFILEF 439
Cdd:PRK10815 466 P-LGGARMEVIF 476
 
Name Accession Description Interval E-value
PRK10815 PRK10815
two-component system sensor histidine kinase PhoQ;
70-439 3.66e-61

two-component system sensor histidine kinase PhoQ;


Pssm-ID: 182754 [Multi-domain]  Cd Length: 485  Bit Score: 206.41  E-value: 3.66e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  70 SILTPELNNLNSDTYAMIYRD---------DVPiwHSESAVNVNFV--PQYIEPKAGAADFRRVVYNNTAYwQLSLTVIL 138
Cdd:PRK10815  69 SIELPENLDLNSPTLVLIYDEngkllwrqrDVP--WLEKMIQPEWLkkNGFHEIETDVNDSSLLLSGDHSA-QQQLKEVR 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 139 NNIDQSEQARFILLKRNDALLRL-------MDGFKQTL----VDWMFIMGIAIAGL-MAIGFI-----WSARPLQRLDKE 201
Cdd:PRK10815 146 EDDDDAEMTHSVAVNVYPATSRLpkltivvVDTIPQELqrsyMVWSWFSYVLLANLlLVIPLLwlaawWSLRPIEALAKQ 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 202 IKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYRASLSDLAHALKTPLAVLKSSPLA---------NDADA- 271
Cdd:PRK10815 226 VRELEEGEREQLDPNPPRELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSlrsgkqmsvEQAEPi 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 272 -QEQLDRINVMIEHQLKRAA--TGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGN 348
Cdd:PRK10815 306 mLEQISRISQQIGYYLHRASmrSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEITFVGEKNDFMEVMGN 385
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 349 LIDNACKACRSQVSIDVSQA-KTLSISICDDGPGIQPDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHS 427
Cdd:PRK10815 386 VLDNACKYCLEFVEISARQTdEHLHIVVEDDGPGIPESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDS 465
                        410
                 ....*....|..
gi 639351759 428 QrLGGAKFILEF 439
Cdd:PRK10815 466 P-LGGARMEVIF 476
HATPase_PhoQ-like cd16954
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
305-439 6.22e-46

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.


Pssm-ID: 340430 [Multi-domain]  Cd Length: 135  Bit Score: 155.48  E-value: 6.22e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 305 PVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVSQAKT-LSISICDDGPGIQ 383
Cdd:cd16954    1 PLLDSLCSALNKVYQRKGVSISLDISPELRFPGERNDLMELLGNLLDNACKWCLEFVEVTARQTDGgLHLIVDDDGPGVP 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 639351759 384 PDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHSqRLGGAKFILEF 439
Cdd:cd16954   81 ESQRSKIFQRGQRLDEQRPGQGLGLAIAKEIVEQYGGELSLSDS-PLGGARFEVVF 135
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
130-439 2.10e-34

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 130.80  E-value: 2.10e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 130 WQLSLTVILNNIDQSEQARFILLKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAIGFIWSARPLQRLDKEIKAIESGD 209
Cdd:COG0642    1 LLLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 210 IQEIKGLYPVELQTIKADLNLLLESQQRQKERYrasLSDLAHALKTPLAVLK--SSPLANDADA---------QEQLDRI 278
Cdd:COG0642   81 LLLLLLLLLLLLLLLLLALLLLLEEANEAKSRF---LANVSHELRTPLTAIRgyLELLLEELDEeqreyletiLRSADRL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 279 NVMIEHQLK--RAATGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDK-DYFLGDKTDLMELLGNLIDNACK 355
Cdd:COG0642  158 LRLINDLLDlsRLEAGKLELEPEPVDLAELLEEVVELFRPLAEEKGIELELDLPDDlPTVRGDPDRLRQVLLNLLSNAIK 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 356 ACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLD--TYESGHGVGMAIVSDLVKSYHGLLTIShSQRL 430
Cdd:COG0642  238 YTPEGGTVTVSvrrEGDRVRISVEDTGPGIPPEDLERIFEPFFRTDpsRRGGGTGLGLAIVKRIVELHGGTIEVE-SEPG 316

                 ....*....
gi 639351759 431 GGAKFILEF 439
Cdd:COG0642  317 KGTTFTVTL 325
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
337-439 6.08e-21

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 87.70  E-value: 6.08e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759   337 GDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE---SGHGVGMAI 410
Cdd:smart00387   1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTlerDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSrkiGGTGLGLSI 80
                           90       100
                   ....*....|....*....|....*....
gi 639351759   411 VSDLVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:smart00387  81 VKKLVELHGGEISVE-SEPGGGTTFTITL 108
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
337-439 3.46e-20

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 85.50  E-value: 3.46e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  337 GDKTDLMELLGNLIDNACKAC--RSQVSIDVSQAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE-SGHGVGMAIVSD 413
Cdd:pfam02518   1 GDELRLRQVLSNLLDNALKHAakAGEITVTLSEGGELTLTVEDNGIGIPPEDLPRIFEPFSTADKRGgGGTGLGLSIVRK 80
                          90       100
                  ....*....|....*....|....*.
gi 639351759  414 LVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:pfam02518  81 LVELLGGTITVE-SEPGGGTTVTLTL 105
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
6-439 1.96e-16

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 81.28  E-value: 1.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759    6 ISLKIRQG--FILVFVLLVALP--ILFYSIGKAYYASLVDATEKNLEAHLYSLISEVDFTERGIIMPSSIltPELNNLNS 81
Cdd:TIGR01386   2 RSLTLRLAllFAAVTALVFALSgfMLYSSLERHFEERDREELQGKLEQVRRFLRDPADLDEDIKRLQEKI--DDLLVGHS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759   82 DTYAMIYRDDVPIWHSESAVNVnfVPQYIEPKAGAADFRRVVYNNTAYWQLSLTV-ILNNIDQSEQARFILLKRNDALLR 160
Cdd:TIGR01386  80 DLALSILNPDGRLLFERAQGAA--LVPAVAANDALLELDQADAKMTHYRSILRSVaALPGGKGRKPVQITVALDINAHTH 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  161 LMDGFKQTLVdwmfimGIAIAGLMAIGFI--WSAR----PLQRLDKEIKAIESGDI-QEIK-GLYPVELQTIKADLNLLL 232
Cdd:TIGR01386 158 LLDALRKWLI------LIAVLLVLLTALLgwWITRlglePLRRLSAVAARISPESLdQRLDpSRAPAELRELAQSFNAML 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  233 esqQRQKERYR--ASLS-DLAHALKTPLA-------VLKSSPLANDA------DAQEQLDRINVMIEHQ--LKRAATGAS 294
Cdd:TIGR01386 232 ---GRLEDAFQrlSQFSaDLAHELRTPLTnllgqtqVALSQPRTGEEyrevleSNLEELERLSRMVSDMlfLARADNGQL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  295 DTWKKQTPIKPVIDSILSAMGKVYRDKDIIFncKVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTL 371
Cdd:TIGR01386 309 ALERVRLDLAAELAKVAEYFEPLAEERGVRI--RVEGEGLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRierRSDEV 386
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639351759  372 SISICDDGPGIQPDKRESLLQRGTRLDT----YESGHGVGMAIVSDLVKSYHGllTISHSQRLGGAKFILEF 439
Cdd:TIGR01386 387 RVSVSNPGPGIPPEHLSRLFDRFYRVDParsnSGEGTGLGLAIVRSIMEAHGG--RASAESPDGKTRFILRF 456
 
Name Accession Description Interval E-value
PRK10815 PRK10815
two-component system sensor histidine kinase PhoQ;
70-439 3.66e-61

two-component system sensor histidine kinase PhoQ;


Pssm-ID: 182754 [Multi-domain]  Cd Length: 485  Bit Score: 206.41  E-value: 3.66e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  70 SILTPELNNLNSDTYAMIYRD---------DVPiwHSESAVNVNFV--PQYIEPKAGAADFRRVVYNNTAYwQLSLTVIL 138
Cdd:PRK10815  69 SIELPENLDLNSPTLVLIYDEngkllwrqrDVP--WLEKMIQPEWLkkNGFHEIETDVNDSSLLLSGDHSA-QQQLKEVR 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 139 NNIDQSEQARFILLKRNDALLRL-------MDGFKQTL----VDWMFIMGIAIAGL-MAIGFI-----WSARPLQRLDKE 201
Cdd:PRK10815 146 EDDDDAEMTHSVAVNVYPATSRLpkltivvVDTIPQELqrsyMVWSWFSYVLLANLlLVIPLLwlaawWSLRPIEALAKQ 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 202 IKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYRASLSDLAHALKTPLAVLKSSPLA---------NDADA- 271
Cdd:PRK10815 226 VRELEEGEREQLDPNPPRELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSlrsgkqmsvEQAEPi 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 272 -QEQLDRINVMIEHQLKRAA--TGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGN 348
Cdd:PRK10815 306 mLEQISRISQQIGYYLHRASmrSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEITFVGEKNDFMEVMGN 385
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 349 LIDNACKACRSQVSIDVSQA-KTLSISICDDGPGIQPDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHS 427
Cdd:PRK10815 386 VLDNACKYCLEFVEISARQTdEHLHIVVEDDGPGIPESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDS 465
                        410
                 ....*....|..
gi 639351759 428 QrLGGAKFILEF 439
Cdd:PRK10815 466 P-LGGARMEVIF 476
HATPase_PhoQ-like cd16954
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
305-439 6.22e-46

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.


Pssm-ID: 340430 [Multi-domain]  Cd Length: 135  Bit Score: 155.48  E-value: 6.22e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 305 PVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVSQAKT-LSISICDDGPGIQ 383
Cdd:cd16954    1 PLLDSLCSALNKVYQRKGVSISLDISPELRFPGERNDLMELLGNLLDNACKWCLEFVEVTARQTDGgLHLIVDDDGPGVP 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 639351759 384 PDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHSqRLGGAKFILEF 439
Cdd:cd16954   81 ESQRSKIFQRGQRLDEQRPGQGLGLAIAKEIVEQYGGELSLSDS-PLGGARFEVVF 135
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
130-439 2.10e-34

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 130.80  E-value: 2.10e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 130 WQLSLTVILNNIDQSEQARFILLKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAIGFIWSARPLQRLDKEIKAIESGD 209
Cdd:COG0642    1 LLLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 210 IQEIKGLYPVELQTIKADLNLLLESQQRQKERYrasLSDLAHALKTPLAVLK--SSPLANDADA---------QEQLDRI 278
Cdd:COG0642   81 LLLLLLLLLLLLLLLLLALLLLLEEANEAKSRF---LANVSHELRTPLTAIRgyLELLLEELDEeqreyletiLRSADRL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 279 NVMIEHQLK--RAATGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDK-DYFLGDKTDLMELLGNLIDNACK 355
Cdd:COG0642  158 LRLINDLLDlsRLEAGKLELEPEPVDLAELLEEVVELFRPLAEEKGIELELDLPDDlPTVRGDPDRLRQVLLNLLSNAIK 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 356 ACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLD--TYESGHGVGMAIVSDLVKSYHGLLTIShSQRL 430
Cdd:COG0642  238 YTPEGGTVTVSvrrEGDRVRISVEDTGPGIPPEDLERIFEPFFRTDpsRRGGGTGLGLAIVKRIVELHGGTIEVE-SEPG 316

                 ....*....
gi 639351759 431 GGAKFILEF 439
Cdd:COG0642  317 KGTTFTVTL 325
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
235-439 1.03e-30

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 118.47  E-value: 1.03e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 235 QQRQKERYRAS-LSDLAHALKTPLAV-------LKSSPLANDADAQEQLDRI-------NVMIEHQLK--RAATGASDTW 297
Cdd:COG2205    8 ELEELERLKSEfLANVSHELRTPLTSilgaaelLLDEEDLSPEERRELLEIIresaerlLRLIEDLLDlsRLESGKLSLE 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 298 KKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKD-YFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSI 373
Cdd:COG2205   88 LEPVDLAELLEEAVEELRPLAEEKGIRLELDLPPELpLVYADPELLEQVLANLLDNAIKYSPPGGTITISarrEGDGVRI 167
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639351759 374 SICDDGPGIQPDKRESLLQRGTRLDTY--ESGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEF 439
Cdd:COG2205  168 SVSDNGPGIPEEELERIFERFYRGDNSrgEGGTGLGLAIVKRIVEAHGGTIWV-ESEPGGGTTFTVTL 234
WalK COG5002
Sensor histidine kinase WalK [Signal transduction mechanisms];
119-439 2.35e-26

Sensor histidine kinase WalK [Signal transduction mechanisms];


Pssm-ID: 444026 [Multi-domain]  Cd Length: 390  Bit Score: 109.64  E-value: 2.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 119 FRRVVYNNTAYWQLSLTVILNNIDQSEQARFILLKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAIGFIWSARPLQRL 198
Cdd:COG5002   37 LLLLLLLLLLLLLLLLALLLLLLLLLLLLLALLLLLLLLLLLLALALLLLALLLLLLLLLLLLALLILLLLLALLILLAA 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 199 DKEIKAIESGDIQEIKGLYPVELQTIKADLNLLLE----SQQRQKERYRASL-SDLAHALKTPLAVLKS------SPLAN 267
Cdd:COG5002  117 LLLLLSELLLLLLLLGRLSLRLSALLLGLLLLAAVerdiTELERLEQMRREFvANVSHELRTPLTSIRGylelllDGAAD 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 268 DAD--------AQEQLDRINVMIE--HQLKRAATGASDTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFL- 336
Cdd:COG5002  197 DPEerreyleiILEEAERLSRLVNdlLDLSRLESGELKLEKEPVDLAELLEEVVEELRPLAEEKGIELELDLPEDPLLVl 276
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 337 GDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMA 409
Cdd:COG5002  277 GDPDRLEQVLTNLLDNAIKYTPEGGTITVSlreEDDQVRISVRDTGIGIPEEDLPRIFERFYRVDKSRSretgGTGLGLA 356
                        330       340       350
                 ....*....|....*....|....*....|
gi 639351759 410 IVSDLVKSYHGLLTIsHSQRLGGAKFILEF 439
Cdd:COG5002  357 IVKHIVEAHGGRIWV-ESEPGKGTTFTITL 385
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
337-439 6.08e-21

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 87.70  E-value: 6.08e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759   337 GDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE---SGHGVGMAI 410
Cdd:smart00387   1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTlerDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSrkiGGTGLGLSI 80
                           90       100
                   ....*....|....*....|....*....
gi 639351759   411 VSDLVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:smart00387  81 VKKLVELHGGEISVE-SEPGGGTTFTITL 108
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
337-439 3.46e-20

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 85.50  E-value: 3.46e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  337 GDKTDLMELLGNLIDNACKAC--RSQVSIDVSQAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE-SGHGVGMAIVSD 413
Cdd:pfam02518   1 GDELRLRQVLSNLLDNALKHAakAGEITVTLSEGGELTLTVEDNGIGIPPEDLPRIFEPFSTADKRGgGGTGLGLSIVRK 80
                          90       100
                  ....*....|....*....|....*.
gi 639351759  414 LVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:pfam02518  81 LVELLGGTITVE-SEPGGGTTVTLTL 105
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
305-444 6.34e-18

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 85.29  E-value: 6.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 305 PVIDSILSAMGKVYRDKDIIFNCKVSD--KDYFLGDkTDLMELLGNLIDNACKACRSQ------VSIDVSQAK-TLSISI 375
Cdd:COG3290  244 PVLAALLLGKAARARERGIDLTIDIDSdlPDLPLSD-TDLVTILGNLLDNAIEAVEKLpeeerrVELSIRDDGdELVIEV 322
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639351759 376 CDDGPGIQPDKRESLLQRG--TRLdtyESGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEFNYHEK 444
Cdd:COG3290  323 EDSGPGIPEELLEKIFERGfsTKL---GEGRGLGLALVKQIVEKYGGTIEV-ESEEGEGTVFTVRLPKEGE 389
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
117-439 1.81e-17

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 83.31  E-value: 1.81e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 117 ADFRRVVYNNTAYWQLSLTVILNNIDQSEQARFILLKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAIGFIWSARPLQ 196
Cdd:COG4191    8 LLLLLALLRALALALALLLLLLLLLLALLLLLLALLLALLALLLLLLLLLLLLLLELLLLLLALLGGLLRLLLLLGLLLL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 197 RLDKEIKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYR-----ASL----SDLAHALKTPLAVLKSS---- 263
Cdd:COG4191   88 LLLEALLLLLLAALDAEENAELEELERDITELERAEEELRELQEQLVqseklAALgelaAGIAHEINNPLAAILGNaell 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 264 -----PLANDADAQEQLDRINVMIEH------QLKRAATGASDTwKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDK 332
Cdd:COG4191  168 rrrleDEPDPEELREALERILEGAERaaeivrSLRAFSRRDEEE-REPVDLNELIDEALELLRPRLKARGIEVELDLPPD 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 333 D-YFLGDKTDLMELLGNLIDNACKACRS----QVSIDVSQA-KTLSISICDDGPGIQPDKRESL---------LQRGTrl 397
Cdd:COG4191  247 LpPVLGDPGQLEQVLLNLLINAIDAMEEgeggRITISTRREgDYVVISVRDNGPGIPPEVLERIfepffttkpVGKGT-- 324
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 639351759 398 dtyesghGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEF 439
Cdd:COG4191  325 -------GLGLSISYGIVEKHGGRIEV-ESEPGGGTTFTITL 358
HATPase cd00075
Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ...
342-439 1.93e-17

Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.


Pssm-ID: 340391 [Multi-domain]  Cd Length: 102  Bit Score: 77.26  E-value: 1.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYES--GHGVGMAIVSDLVK 416
Cdd:cd00075    1 LEQVLSNLLDNALKYSPPGGTIEISlrqEGDGVVLEVEDNGPGIPEEDLERIFERFYRGDKSREggGTGLGLAIVRRIVE 80
                         90       100
                 ....*....|....*....|...
gi 639351759 417 SYHGLLTIsHSQRLGGAKFILEF 439
Cdd:cd00075   81 AHGGRITV-ESEPGGGTTFTVTL 102
HATPase_BasS-like cd16940
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
337-431 7.67e-17

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.


Pssm-ID: 340417 [Multi-domain]  Cd Length: 113  Bit Score: 75.91  E-value: 7.67e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 337 GDKTDLMELLGNLIDNACKACR--SQVSIDVSQAKTLSISICDDGPGIQPDKRESLLQRGTRLD-TYESGHGVGMAIVSD 413
Cdd:cd16940    9 GDALLLFLLLRNLVDNAVRYSPqgSRVEIKLSADDGAVIRVEDNGPGIDEEELEALFERFYRSDgQNYGGSGLGLSIVKR 88
                         90
                 ....*....|....*...
gi 639351759 414 LVKSYHGLLTISHSQRLG 431
Cdd:cd16940   89 IVELHGGQIFLGNAQGGG 106
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
234-444 1.70e-16

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 81.16  E-value: 1.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 234 SQQRQKERyRASLSD----LAHALKTPLAVLKSS----------PLANDAD--------AQEQLDRINVMIEHQLKRAAT 291
Cdd:COG5000  190 TELLRAER-LAAWGElarrIAHEIKNPLTPIQLSaerlrrkladKLEEDREdleraldtIIRQVDRLKRIVDEFLDFARL 268
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 292 GASDtwKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKD-YFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---Q 367
Cdd:COG5000  269 PEPQ--LEPVDLNELLREVLALYEPALKEKDIRLELDLDPDLpEVLADRDQLEQVLINLLKNAIEAIEEGGEIEVStrrE 346
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639351759 368 AKTLSISICDDGPGIQPDKRESLLQRG--TRldtyESGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEFNYHEK 444
Cdd:COG5000  347 DGRVRIEVSDNGPGIPEEVLERIFEPFftTK----PKGTGLGLAIVKKIVEEHGGTIEL-ESRPGGGTTFTIRLPLAEE 420
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
6-439 1.96e-16

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 81.28  E-value: 1.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759    6 ISLKIRQG--FILVFVLLVALP--ILFYSIGKAYYASLVDATEKNLEAHLYSLISEVDFTERGIIMPSSIltPELNNLNS 81
Cdd:TIGR01386   2 RSLTLRLAllFAAVTALVFALSgfMLYSSLERHFEERDREELQGKLEQVRRFLRDPADLDEDIKRLQEKI--DDLLVGHS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759   82 DTYAMIYRDDVPIWHSESAVNVnfVPQYIEPKAGAADFRRVVYNNTAYWQLSLTV-ILNNIDQSEQARFILLKRNDALLR 160
Cdd:TIGR01386  80 DLALSILNPDGRLLFERAQGAA--LVPAVAANDALLELDQADAKMTHYRSILRSVaALPGGKGRKPVQITVALDINAHTH 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  161 LMDGFKQTLVdwmfimGIAIAGLMAIGFI--WSAR----PLQRLDKEIKAIESGDI-QEIK-GLYPVELQTIKADLNLLL 232
Cdd:TIGR01386 158 LLDALRKWLI------LIAVLLVLLTALLgwWITRlglePLRRLSAVAARISPESLdQRLDpSRAPAELRELAQSFNAML 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  233 esqQRQKERYR--ASLS-DLAHALKTPLA-------VLKSSPLANDA------DAQEQLDRINVMIEHQ--LKRAATGAS 294
Cdd:TIGR01386 232 ---GRLEDAFQrlSQFSaDLAHELRTPLTnllgqtqVALSQPRTGEEyrevleSNLEELERLSRMVSDMlfLARADNGQL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  295 DTWKKQTPIKPVIDSILSAMGKVYRDKDIIFncKVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTL 371
Cdd:TIGR01386 309 ALERVRLDLAAELAKVAEYFEPLAEERGVRI--RVEGEGLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRierRSDEV 386
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639351759  372 SISICDDGPGIQPDKRESLLQRGTRLDT----YESGHGVGMAIVSDLVKSYHGllTISHSQRLGGAKFILEF 439
Cdd:TIGR01386 387 RVSVSNPGPGIPPEHLSRLFDRFYRVDParsnSGEGTGLGLAIVRSIMEAHGG--RASAESPDGKTRFILRF 456
PRK10604 PRK10604
sensor protein RstB; Provisional
169-437 3.65e-16

sensor protein RstB; Provisional


Pssm-ID: 236724 [Multi-domain]  Cd Length: 433  Bit Score: 80.03  E-value: 3.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 169 LVDWMFIMGIAIAglMAIG-FIWsARP----LQRLDKEIKAIESGDIQEIKGLYP--------VELQTIKADLNLLLESq 235
Cdd:PRK10604 136 LLDIALLALIGLS--LAFPvFLW-MRPhwqdMLKLEAAAQRLGDGHLAERIHFDEgsslerlgVAFNQMADNINALIAS- 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 236 qrqkeryRASLSD-LAHALKTPLAVLKSS-PLANDADAQEQ------LDRINVMIEHQLKRAATGASDTWKKQTPI--KP 305
Cdd:PRK10604 212 -------KKQLIDgIAHELRTPLVRLRYRlEMSDNLSAAESqalnrdIGQLEALIEELLTYARLDRPQNELHLSEPdlPA 284
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 306 VIDSILSAMGKVYRDKDIifNCKVSDKDYFLGDKTDLME-LLGNLIDNACKACRSQVSIDVS-QAKTLSISICDDGPGIQ 383
Cdd:PRK10604 285 WLSTHLADIQAVTPEKTV--RLDTPHQGDYGALDMRLMErVLDNLLNNALRYAHSRVRVSLLlDGNQACLIVEDDGPGIP 362
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 384 PDKRESLLQRGTRLDtyES------GHGVGMAIVSDLVKSYHGLLTISHSQrLGGAKFIL 437
Cdd:PRK10604 363 PEERERVFEPFVRLD--PSrdratgGCGLGLAIVHSIALAMGGSVNCDESE-LGGARFSF 419
COG4251 COG4251
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ...
116-439 2.00e-14

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];


Pssm-ID: 443393 [Multi-domain]  Cd Length: 503  Bit Score: 75.21  E-value: 2.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 116 AADFRRVVYNNTAYWQLSLTVILNNIDQSEQARFILLKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAIGFIWSARPL 195
Cdd:COG4251  145 LALALLLLLLLLLLLLLLLLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGG 224
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 196 QRLDKEIKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYRASL----SDL-------AHALKTPL------- 257
Cdd:COG4251  225 LGLLLLLLLLLVLLLLLILLLLLLILVLELLELRLELEELEEELEERTAELersnEELeqfayvaSHDLREPLrkisgfs 304
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 258 -AVLKSSPLANDADAQEQLDRI-------NVMIEH--QLKRAATGASDtwKKQTPIKPVIDSILSAMGKVYRDKDIIFNc 327
Cdd:COG4251  305 qLLEEDYGDKLDEEGREYLERIrdaaermQALIDDllAYSRVGRQELE--FEPVDLNELLEEVLEDLEPRIEERGAEIE- 381
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 328 kVSDKDYFLGDKTDLMELLGNLIDNACKACRS----QVSIDVSQAKT-LSISICDDGPGIQPDKRE---SLLQRGTRLDT 399
Cdd:COG4251  382 -VGPLPTVRGDPTLLRQVFQNLISNAIKYSRPgeppRIEIGAEREGGeWVFSVRDNGIGIDPEYAEkifEIFQRLHSRDE 460
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 639351759 400 YEsGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEF 439
Cdd:COG4251  461 YE-GTGIGLAIVKKIVERHGGRIWV-ESEPGEGATFYFTL 498
PRK10755 PRK10755
two-component system sensor histidine kinase PmrB;
190-432 5.99e-14

two-component system sensor histidine kinase PmrB;


Pssm-ID: 236751 [Multi-domain]  Cd Length: 356  Bit Score: 72.69  E-value: 5.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 190 WSARPLQRLDKEIKA---------IESGDIQEIkglypvelQTIKADLNLLLESQQRQKERYRASLSDLAHALKTPLAVL 260
Cdd:PRK10755  84 WITRPLAELQKELEArtadnltpiAIHSSTLEI--------EAVTSALNQLVSRLTSTLDQERLFTADVAHELRTPLAGI 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 261 --------KSSPlandADAQEQLDRINVM---IEHQLKRAATGASDTWKKQTPIKPVIDSI------LSAMGKVyRDKDI 323
Cdd:PRK10755 156 rlhlelleKQHH----IDVAPLIARLDQMmhtVEQLLQLARAGQSFSSGHYQTVKLLEDVIlpsqdeLSEMLEQ-RQQTL 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 324 IFNCKVSDKdYFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTY 400
Cdd:PRK10755 231 LLPESAADI-TVQGDATLLRLLLRNLVENAHRYSPEGSTITIKlsqEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR 309
                        250       260       270
                 ....*....|....*....|....*....|..
gi 639351759 401 ESGHGVGMAIVSDLVKSYHGLLTISHSQRLGG 432
Cdd:PRK10755 310 YGGIGLGLSIVSRITQLHHGQFFLQNRQERSG 341
HATPase_RstB-like cd16939
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
346-437 2.54e-13

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Salmonella typhimurium RstB; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Salmonella typhimurium RstB HK of the RstA-RstB two-component regulatory system (TCS), which regulates expression of the constituents participating in pyrimidine metabolism and iron acquisition, and may be required for regulation of Salmonella motility and invasion. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensor domain.


Pssm-ID: 340416 [Multi-domain]  Cd Length: 104  Bit Score: 65.91  E-value: 2.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 346 LGNLIDNACKACRSQVSIDVS-QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMAIVSDLVKSYHG 420
Cdd:cd16939    5 LDNLLRNALRYAHRTVRIALLvSGGRLTLIVEDDGPGIPAAARERVFEPFVRLDPSRDratgGFGLGLAIVHRVALWHGG 84
                         90
                 ....*....|....*..
gi 639351759 421 LLTISHSQrLGGAKFIL 437
Cdd:cd16939   85 HVECDDSE-LGGACFRL 100
cpxA PRK09470
envelope stress sensor histidine kinase CpxA;
190-432 4.89e-13

envelope stress sensor histidine kinase CpxA;


Pssm-ID: 236532 [Multi-domain]  Cd Length: 461  Bit Score: 70.73  E-value: 4.89e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 190 WS-ARPLQRLDKEIKAIESGDIQEIKGLY--PVEL--------QTIKAdLNLLLESQQRQkeryrasLSDLAHALKTPLA 258
Cdd:PRK09470 188 WSlAKPARKLKNAADEVAQGNLRQHPELEtgPQEFrqagasfnQMVTA-LERMMTSQQRL-------LSDISHELRTPLT 259
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 259 VLKsspLAN----------------DADAQeqldRINVMI-----------EHQLKRAATGASDTWkkqtpikpviDSIL 311
Cdd:PRK09470 260 RLQ---LATallrrrqgeskeleriETEAQ----RLDSMIndllvlsrnqqKNHLERETFKANSLW----------SEVL 322
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 312 samgkvyrdKDIIFNCKVSDKD---------YFL-GDKTDLMELLGNLIDNACKACRSQVSIDVS-QAKTLSISICDDGP 380
Cdd:PRK09470 323 ---------EDAKFEAEQMGKSltvsappgpWPInGNPNALASALENIVRNALRYSHTKIEVAFSvDKDGLTITVDDDGP 393
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 639351759 381 GIQPDKRESLLQRGTRLDT---YES-GHGVGMAIVSDLVKSYHGLLTISHSQrLGG 432
Cdd:PRK09470 394 GVPEEEREQIFRPFYRVDEardRESgGTGLGLAIVENAIQQHRGWVKAEDSP-LGG 448
HATPase_EnvZ-like cd16950
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-431 4.32e-12

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.


Pssm-ID: 340426 [Multi-domain]  Cd Length: 101  Bit Score: 62.08  E-value: 4.32e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKACRSQVSIDV-SQAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE--SGHGVGMAIVSDLVKSY 418
Cdd:cd16950    1 LKRVLSNLVDNALRYGGGWVEVSSdGEGNRTRIQVLDNGPGIAPEEVDELFQPFYRGDNARgtSGTGLGLAIVQRISDAH 80
                         90
                 ....*....|...
gi 639351759 419 HGLLTISHSQRLG 431
Cdd:cd16950   81 GGSLTLANRAGGG 93
NtrB COG3852
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
232-439 5.42e-12

Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];


Pssm-ID: 443061 [Multi-domain]  Cd Length: 361  Bit Score: 66.79  E-value: 5.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 232 LESQQRQKERYRAS---LSDLAHALKTPLAVLKSSP--LANDADAQEQLDRINVMIEhQLKRAAT---------GASDTW 297
Cdd:COG3852  122 LERELRRAEKLAAVgelAAGLAHEIRNPLTGIRGAAqlLERELPDDELREYTQLIIE-EADRLNNlvdrllsfsRPRPPE 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 298 KKQTPIKPVIDSILSAMGKVY-RDKDIIFNCKVSDKDyFLGDKTDLMELLGNLIDNACKAC------------RSQVSID 364
Cdd:COG3852  201 REPVNLHEVLERVLELLRAEApKNIRIVRDYDPSLPE-VLGDPDQLIQVLLNLVRNAAEAMpeggtitirtrvERQVTLG 279
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 365 VSQAKT-LSISICDDGPGIQPDKRESLlqrgtrLD----TYESGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGAKFILEF 439
Cdd:COG3852  280 GLRPRLyVRIEVIDNGPGIPEEILDRI------FEpfftTKEKGTGLGLAIVQKIVEQHGGTIEV-ESEPGKGTTFRIYL 352
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
175-440 1.31e-11

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 66.63  E-value: 1.31e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 175 IMGIAIAGLMAIGFI-W-------SARpLQRLDKEIKAIESGDIQE---IKG------------LYPVELQTIKADLNLL 231
Cdd:COG4192  328 LLAIALLSLLLAVLInYfyvrrrlVKR-LNALSDAMAAIAAGDLDVpipVDGndeigriarllrVFRDQAIEKTQELETE 406
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 232 LESQQRQKERYRASLSDLAHALK--------TPLAVLKSSPL----------------ANDADAQEQLDRINVMIEHQLK 287
Cdd:COG4192  407 IEERKRIEKNLRQTQDELIQAAKmavvgqtmTSLAHELNQPLnamsmylfsakkaleqENYAQLPTSLDKIEGLIERMDK 486
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 288 RAATGASDTWKKQTPIKPV--IDSILSAMGKV---YRDKDIIFNckVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVS 362
Cdd:COG4192  487 IIKSLRQFSRKSDTPLQPVdlRQVIEQAWELVesrAKPQQITLH--IPDDLMVQGDQVLLEQVLVNLLVNALDAVATQPQ 564
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 363 IDV---SQAKTLSISICDDGPGIqpDKRESLLQRGTrlDTYESGHGVGMAIVSDLVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:COG4192  565 ISVdllSNAENLRVAISDNGNGW--PLVDKLFTPFT--TTKEVGLGLGLSICRSIMQQFGGDLYLA-STLERGAMVILEF 639

                 .
gi 639351759 440 N 440
Cdd:COG4192  640 N 640
HATPase_BaeS-like cd16946
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
338-439 2.28e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BaeS HK of the BaeS/BaeR two-component regulatory system (TCS), which responds to envelope stress. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensory domain.


Pssm-ID: 340422 [Multi-domain]  Cd Length: 109  Bit Score: 57.47  E-value: 2.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 338 DKTDLMELLGNLIDNACKACRSQVSIDVSQAKT---LSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMAI 410
Cdd:cd16946    1 DRDRLQQLFVNLLENSLRYTDTGGKLRIRAAQTpqeVRLDVEDSAPGVSDDQLARLFERFYRVESSRNrasgGSGLGLAI 80
                         90       100
                 ....*....|....*....|....*....
gi 639351759 411 VSDLVKSYHGLLTISHSQrLGGAKFILEF 439
Cdd:cd16946   81 CHNIALAHGGTISAEHSP-LGGLRLVLTL 108
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-437 2.82e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 57.30  E-value: 2.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKAC------RSQVSIDVSQ-AKTLSISICDDGPGIQPDKRESLLQRG--TRldtYESGHGVGMAIVS 412
Cdd:cd16915    1 LITIVGNLIDNALDALaatgapNKQVEVFLRDeGDDLVIEVRDTGPGIAPELRDKVFERGvsTK---GQGERGIGLALVR 77
                         90       100
                 ....*....|....*....|....*
gi 639351759 413 DLVKSYHGLLTIShSQRLGGAKFIL 437
Cdd:cd16915   78 QSVERLGGSITVE-SEPGGGTTFSI 101
HATPase_CpxA-like cd16949
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
348-431 1.34e-09

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CpxA; This family includes the histidine kinase-like ATPase (HATPase) domains of two-component sensor histidine kinase (HKs) similar to Escherichia coli CpxA, HK of the CpxA-CpxR two-component regulatory system (TCS) which may function in acid stress and in cell wall stability. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a CpxA family periplasmic domain.


Pssm-ID: 340425 [Multi-domain]  Cd Length: 104  Bit Score: 55.02  E-value: 1.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 348 NLIDNACKACRSQVSIDVSQAKT-LSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMAIVSDLVKSYHGLL 422
Cdd:cd16949    7 NVLRNALRYSPSKILLDISQDGDqWTITITDDGPGVPEDQLEQIFLPFYRVDSARDresgGTGLGLAIAERAIEQHGGKI 86

                 ....*....
gi 639351759 423 TISHSQRLG 431
Cdd:cd16949   87 KASNRKPGG 95
HATPase_AgrC-ComD-like cd16935
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
306-426 1.79e-09

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.


Pssm-ID: 340412 [Multi-domain]  Cd Length: 134  Bit Score: 55.66  E-value: 1.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 306 VIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELLGNLIDNACKACR------SQVSIDVSQAK-TLSISICDD 378
Cdd:cd16935    1 ALDSLLSEKLELAREKGIEFTIEIDIPILLPISPLDLCIIFGNLLDNAIEACAkidkenRFIHLKIRQKKgFLIISIENS 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 639351759 379 GPGIQPDKRESLLQrgtrlDTYESGHGVGMAIVSDLVKSYHGLLTISH 426
Cdd:cd16935   81 YEGELKKKNGLFLS-----TKKDKNHGIGLKSIREIVKKYNGNLSIEY 123
HATPase_NtrY-like cd16944
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
338-433 1.21e-08

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Azorhizobium caulinodans NtrY; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Azorhizobium caulinodans ORS571 NtrY of the NtrY-NtrX TCS, which is involved in nitrogen fixation and metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also have PAS sensor domains.


Pssm-ID: 340420 [Multi-domain]  Cd Length: 108  Bit Score: 52.54  E-value: 1.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 338 DKTDLMELLGNLIDNACKAC------RSQVSIDVS--QAKTLSISICDDGPGIQPDKRESLLQrgTRLDTYESGHGVGMA 409
Cdd:cd16944    1 DTTQISQVLTNILKNAAEAIegrpsdVGEVRIRVEadQDGRIVLIVCDNGKGFPREMRHRATE--PYVTTRPKGTGLGLA 78
                         90       100
                 ....*....|....*....|....
gi 639351759 410 IVSDLVKSYHGLLTIShSQRLGGA 433
Cdd:cd16944   79 IVKKIMEEHGGRISLS-NREAGGA 101
phoR PRK11006
phosphate regulon sensor histidine kinase PhoR;
234-435 3.16e-08

phosphate regulon sensor histidine kinase PhoR;


Pssm-ID: 182895 [Multi-domain]  Cd Length: 430  Bit Score: 55.40  E-value: 3.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 234 SQQRQKERYRASL-SDLAHALKTPLAVLK-----------SSPLANDA--DAQEQLDRINVMIEHQL---KRAATGASDt 296
Cdd:PRK11006 195 TQMHQLEGARRNFfANVSHELRTPLTVLQgylemmqdqplEGALREKAlhTMREQTQRMEGLVKQLLtlsKIEAAPTID- 273
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 297 wkkqtpIKPVIDsiLSAMGKVYRDK---------DIIFNckVSDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVSQ 367
Cdd:PRK11006 274 ------LNEKVD--VPMMLRVLEREaqtlsqgkhTITFE--VDNSLKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRW 343
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639351759 368 AKTLS---ISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMAIVSDLVKSYHGLLTIShSQRLGGAKF 435
Cdd:PRK11006 344 QRVPQgaeFSVEDNGPGIAPEHIPRLTERFYRVDKARSrqtgGSGLGLAIVKHALSHHDSRLEIE-SEVGKGTRF 417
HATPase_TmoS-FixL-DctS-like cd16920
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-435 3.57e-08

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhizobium meliloti FixL, and Rhodobacter capsulatus DctS; includes hybrid sensor histidine kinase similar to Pseudomonas mendocina TmoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs), such as Pseudomonas mendocina TmoS HK of the TmoS-TmoT TCS, which controls the expression of the toluene-4-monooxygenase pathway, Rhizobium meliloti FixL HK of the FixL-FixJ TCS, which regulates the expression of the genes related to nitrogen fixation in the root nodule in response to O(2) levels, and Rhodobacter capsulatus DctS of the DctS-DctR TCS, which controls synthesis of the high-affinity C4-dicarboxylate transport system. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and PAS sensor domain(s); many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340397 [Multi-domain]  Cd Length: 104  Bit Score: 51.24  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKAC------RSQVSIDVSQA--KTLSISICDDGPGIQPDKRESLLQRGTrlDTYESGHGVGMAIVSD 413
Cdd:cd16920    1 IQQVLINLVRNGIEAMseggceRRELTIRTSPAddRAVTISVKDTGPGIAEEVAGQLFDPFY--TTKSEGLGMGLSICRS 78
                         90       100
                 ....*....|....*....|...
gi 639351759 414 LVKSYHGllTISHSQR-LGGAKF 435
Cdd:cd16920   79 IIEAHGG--RLSVESPaGGGATF 99
envZ PRK09467
osmolarity sensor protein; Provisional
346-432 3.97e-08

osmolarity sensor protein; Provisional


Pssm-ID: 236531 [Multi-domain]  Cd Length: 435  Bit Score: 55.30  E-value: 3.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 346 LGNLIDNACKACRSQVSIDVSQ-AKTLSISICDDGPGIQPDKRESLLQRGTRLDTYE--SGHGVGMAIVSDLVKSYHGLL 422
Cdd:PRK09467 336 LANLVVNAARYGNGWIKVSSGTeGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARgsSGTGLGLAIVKRIVDQHNGKV 415
                         90
                 ....*....|
gi 639351759 423 TISHSQRlGG 432
Cdd:PRK09467 416 ELGNSEE-GG 424
HATPase_TutC-TodS-like cd16925
Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas ...
348-438 4.00e-08

Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas putida TodS and Thauera aromatica TutC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) such Pseudomonas putida TodS HK of the TodS-TodT two-component regulatory system (TCS) which controls the expression of a toluene degradation pathway. Thauera aromatica TutC may be part of a TCS that is involved in anaerobic toluene metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), PAS sensor domain(s) and a REC domain.


Pssm-ID: 340402 [Multi-domain]  Cd Length: 110  Bit Score: 51.34  E-value: 4.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 348 NLIDNACKAC----RSQVSIDVSQAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGVGMAIVSDLVKSYH 419
Cdd:cd16925   11 NLLSNAFKFTpdggRIRCILEKFRLNRFLLTVSDSGPGIPPNLREEIFERFRQGDGSSTrahgGTGLGLSIVKEFVELHG 90
                         90
                 ....*....|....*....
gi 639351759 420 GLLTISHSQRlGGAKFILE 438
Cdd:cd16925   91 GTVTVSDAPG-GGALFQVE 108
PRK10337 PRK10337
sensor protein QseC; Provisional
154-432 5.87e-08

sensor protein QseC; Provisional


Pssm-ID: 182388 [Multi-domain]  Cd Length: 449  Bit Score: 54.66  E-value: 5.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 154 RNDALLRLMDGfkqTLVDWMFIMGIAIagLMAIGFIW-SARPLQRLDKEI--KAIESGDIQEIKGLyPVELQTIKADLNL 230
Cdd:PRK10337 152 REDMALAIVAG---QLIPWLVALPIML--IILMVLLGrELAPLKKLALALrmRDPDSETPLNATGV-PSEVRPLVEALNQ 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 231 LLESQQRQKERYRASLSDLAHALKTPLAVLK----SSPLANDaDAQEQ----------LDRINVMIEH--QLKRAATGAS 294
Cdd:PRK10337 226 LFARTHAMMVRERRFTSDAAHELRSPLAALKvqteVAQLSDD-DPQARkkallqlhagIDRATRLVDQllTLSRLDSLDN 304
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 295 DTWKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFLGDKTDLMELL-GNLIDNACKACRSQVSIDVsqakTLS- 372
Cdd:PRK10337 305 LQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHPVIRTGQPLLLSLLvRNLLDNAIRYSPQGSVVDV----TLNa 380
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639351759 373 --ISICDDGPGIQPDKRESLLQRGTRLDTYE-SGHGVGMAIVSDlVKSYHGlLTISHSQRLGG 432
Cdd:PRK10337 381 rnFTVRDNGPGVTPEALARIGERFYRPPGQEaTGSGLGLSIVRR-IAKLHG-MNVSFGNAPEG 441
PRK09303 PRK09303
histidine kinase;
232-420 9.77e-08

histidine kinase;


Pssm-ID: 236462 [Multi-domain]  Cd Length: 380  Bit Score: 53.80  E-value: 9.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 232 LESQQRQKERYrasLSDLAHALKTPL--AVLKSSPLA---NDAD--------------AQEQLDRINVMIeHQLKRAATG 292
Cdd:PRK09303 144 LLEQLKFKDRV---LAMLAHDLRTPLtaASLALETLElgqIDEDtelkpalieqlqdqARRQLEEIERLI-TDLLEVGRT 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 293 ASDTWK---KQTPIKPVIDSILSAMGKVYRDKDIIFNCKV-SDKDYFLGDKTDLMELLGNLIDNACKACRSQVSIDVS-- 366
Cdd:PRK09303 220 RWEALRfnpQKLDLGSLCQEVILELEKRWLAKSLEIQTDIpSDLPSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSml 299
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 639351759 367 --QAKTLSISICDDGPGIQPDKRESLLQRGTRL--DTYESGHGVGMAIVSDLVKSYHG 420
Cdd:PRK09303 300 hrTTQKVQVSICDTGPGIPEEEQERIFEDRVRLprDEGTEGYGIGLSVCRRIVRVHYG 357
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
300-424 1.01e-07

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 54.15  E-value: 1.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 300 QTPIKPVIDSILSA------MGKVYRDKDIIFNCKVSDKDYF--LGDK---TDLMELLGNLIDNACKACRSQV--SIDVS 366
Cdd:PRK11086 381 QEEIGSLLGKIKSPviagflLGKISRARELGITLIISEDSQLpdSGDEdqvHELITILGNLIENALEAVGGEEggEISVS 460
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639351759 367 ---QAKTLSISICDDGPGIQPDKRESLLQRGtrLDTYESGHGVGMAIVSDLVKSYHGLLTI 424
Cdd:PRK11086 461 lhyRNGWLHCEVSDDGPGIAPDEIDAIFDKG--YSTKGSNRGVGLYLVKQSVENLGGSIAV 519
PRK15347 PRK15347
two component system sensor kinase;
232-438 2.66e-07

two component system sensor kinase;


Pssm-ID: 237951 [Multi-domain]  Cd Length: 921  Bit Score: 53.11  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 232 LESQQRQKERY--RAS--LSDLAHALKTPL-------AVLKSSPLAND----ADAQEQ-----LDRINVMIEhqLKRAAT 291
Cdd:PRK15347 384 LAEAKQRAEQAnkRKSehLTTISHEIRTPLngvlgalELLQNTPLTAEqmdlADTARQctlslLAIINNLLD--FSRIES 461
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 292 GASDTWKKQTPIKPVID-SILSAMGKVYrDKDIIFNCKVSDK--DYFLGDKTDLMELLGNLIDNACKACRS-QVSIDV-S 366
Cdd:PRK15347 462 GQMTLSLEETALLPLLDqAMLTIQGPAQ-SKSLTLRTFVGAHvpLYLHLDSLRLRQILVNLLGNAVKFTETgGIRLRVkR 540
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639351759 367 QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTIshSQRLG-GAKFILE 438
Cdd:PRK15347 541 HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTHSQGTGLGLTIASSLAKMMGGELTL--FSTPGvGSCFSLV 611
KinA COG5805
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ...
273-431 2.87e-07

Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444507 [Multi-domain]  Cd Length: 496  Bit Score: 52.81  E-value: 2.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 273 EQLDRINVMIEHQLKRAATGASDtwKKQTPIKPVIDSILSAMGKVYRDKDIIFNCKVSDKDYFL-GDKTDLMELLGNLID 351
Cdd:COG5805  328 SELDRIESIISEFLALAKPQAVN--KEKENINELIQDVVTLLETEAILHNIQIRLELLDEDPFIyCDENQIKQVFINLIK 405
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 352 NACKACRSQVSIDVSQAK---TLSISICDDGPGIQPDkresLLQR-GTR-LDTYESGHGVGMAIVSDLVKSYHGLLTISH 426
Cdd:COG5805  406 NAIEAMPNGGTITIHTEEednSVIIRVIDEGIGIPEE----RLKKlGEPfFTTKEKGTGLGLMVSYKIIENHNGTIDIDS 481

                 ....*
gi 639351759 427 SQRLG 431
Cdd:COG5805  482 KVGKG 486
HATPase_FilI-like cd16921
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-436 8.14e-07

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Methanosaeta harundinacea FilI and some hybrid sensor histidine kinases; This family includes FilI, the histidine kinase (HK) component of FilI-FilRs, a two-component signal transduction system (TCS) of the methanogenic archaeon, Methanosaeta harundinacea, which is involved in regulating methanogenesis. The cytoplasmic HK core consists of a C-terminal HK-like ATPase domain (represented here) and a histidine kinase dimerization and phosphoacceptor domain (HisKA) domain, which, in FilI, are coupled to CHASE, HAMP, PAS, and GAF sensor domains. FilI-FilRs catalyzes the phosphotransfer between FilI (HK) and FilRs (FilR1 and FilR2, response regulators) of the TCS. TCSs are predicted to be of bacterial origin, and acquired by archaea by horizontal gene transfer. This model also includes related HATPase domains such as that of Synechocystis sp. PCC6803 phytochrome-like protein Cph1. Proteins having this HATPase domain and HisKA domain also have accessory sensor domains such as CHASE, GAF, HAMP and PAS; some are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340398 [Multi-domain]  Cd Length: 105  Bit Score: 47.32  E-value: 8.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKACRSQVS--IDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYESGH--GVGMAIVSDL 414
Cdd:cd16921    1 LGQVLTNLLGNAIKFRRPRRPprIEVGaedVGEEWTFYVRDNGIGIDPEYAEKVFGIFQRLHSREEYEgtGVGLAIVRKI 80
                         90       100
                 ....*....|....*....|..
gi 639351759 415 VKSYHGLLTIShSQRLGGAKFI 436
Cdd:cd16921   81 IERHGGRIWLE-SEPGEGTTFY 101
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
9-444 1.02e-06

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 50.79  E-value: 1.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759   9 KIRQGFILVFVLLVALPILFYSIGKAYYASLVDATEKNLEAHLYSLISEVDFTERGIIMPSSILTPELNNLNSDTYAMIY 88
Cdd:COG2972    1 LSKSLSLLSIVLLLLILLLLVLLILLLSLLLIILLLLLLLILLLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLLALL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  89 RDDVPIWHSESAVNVNFVPQYIEPKAGAADFRRVVYNNTAYWQLSLTVILNNIDQseQARFILLKRNDALLRLMDGFKQT 168
Cdd:COG2972   81 LILLLLLLLLLLLILLLSLLLLLALILLLALLLLLSILLLILGLLLIILLLLSLL--GWTLVSLIPKSELFRGLFSLRRL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 169 LVdWMFIMGIAIAGLMAIGFIWS-ARPLQRLDKEIKAIESGDIQEIKGLYPVELQTIKADLNLLLESQQRQKERYRASLS 247
Cdd:COG2972  159 IL-LIILLLLLLALLLSYLLSRSiTRPIKRLKKAMKKVEKGDLVRLEVSGNDEIGILARSFNEMVERIKELIEEVYELEL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 248 DLAHA-LKT------P------LAVLKSspLANDADAQEqldrINVMIEH--QLKRAATGASDTWkkqTPIK---PVIDS 309
Cdd:COG2972  238 EKKEAeLKAlqaqinPhflfntLNSIRW--LAELEDPEE----AEEMLEAlsKLLRYSLSKGDEL---VTLEeelELIKS 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 310 ILSAMGKVYRDKdIIFNCKVSDkdyflgdktDLME------LLGNLIDNACKA----CRSQVSIDVS---QAKTLSISIC 376
Cdd:COG2972  309 YLEIQKLRFGDR-LEVEIEIDE---------ELLDllipklILQPLVENAIEHgiepKEGGGTIRISirkEGDRLVITVE 378
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639351759 377 DDGPGIQPDKRESLLQrgtRLDTYESGHGVGMAIVSDLVKSYHG---LLTIShSQRLGGAKFILEFNYHEK 444
Cdd:COG2972  379 DNGVGMPEEKLEKLLE---ELSSKGEGRGIGLRNVRERLKLYYGeeyGLEIE-SEPGEGTTVTIRIPLEEE 445
PRK09959 PRK09959
acid-sensing system histidine kinase EvgS;
246-431 2.78e-06

acid-sensing system histidine kinase EvgS;


Pssm-ID: 182169 [Multi-domain]  Cd Length: 1197  Bit Score: 49.73  E-value: 2.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  246 LSDLAHALKTP-------LAVLKSSPLAND----------ADAQEQLDRINVMIEhqLKRAATGASDTWKKQTPIKPVID 308
Cdd:PRK09959  716 LATMSHEIRTPissimgfLELLSGSGLSKEqrveaislayATGQSLLGLIGEILD--VDKIESGNYQLQPQWVDIPTLVQ 793
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  309 SILSAMGKVYRDKDIIFNCKVSDKDYFLG--DKTDLMELLGNLIDNA--------CKACRSQVSIDVSQAkTLSISICDD 378
Cdd:PRK09959  794 NTCHSFGAIAASKSIALSCSSTFPDHYLVkiDPQAFKQVLSNLLSNAlkfttegaVKITTSLGHIDDNHA-VIKMTIMDS 872
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 639351759  379 GPGIQPDKRESLLQR--GTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHSQRLG 431
Cdd:PRK09959  873 GSGLSQEEQQQLFKRysQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIG 927
HATPase_SpaK_NisK-like cd16975
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
338-439 3.64e-06

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK. SpaK is the histidine kinase (HK) of the SpaK-SpaR two-component regulatory system (TCS), which is involved in the regulation of the biosynthesis of lantibiotic subtilin. NisK is the HK of the NisK-NisR TCS, which is involved in the regulation of the biosynthesis of lantibiotic nisin. SpaK and NisK may function as membrane-associated protein kinases that phosphorylate SpaR and NisR, respectively, in response to environmental signals.


Pssm-ID: 340434 [Multi-domain]  Cd Length: 107  Bit Score: 45.53  E-value: 3.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 338 DKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGI-QPDKRESLLQ--RGTRLDTYESGHGVGMAIV 411
Cdd:cd16975    1 DTLLLSRALINIISNACQYAPEGGTVSISiydEEEYLYFEIWDNGHGFsEQDLKKALELfyRDDTSRRSGGHYGMGLYIA 80
                         90       100
                 ....*....|....*....|....*...
gi 639351759 412 SDLVKSYHGLLTISHSQRlGGAKFILEF 439
Cdd:cd16975   81 KNLVEKHGGSLIIENSQK-GGAEVTVKI 107
PRK10490 PRK10490
sensor protein KdpD; Provisional
342-435 3.65e-06

sensor protein KdpD; Provisional


Pssm-ID: 236701 [Multi-domain]  Cd Length: 895  Bit Score: 49.26  E-value: 3.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LME-LLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTyES---GHGVGMAIVSDL 414
Cdd:PRK10490 778 LFErVLINLLENAVKYAGAQAEIGIDahvEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK-ESaipGVGLGLAICRAI 856
                         90       100
                 ....*....|....*....|.
gi 639351759 415 VKSYHGLLTISHSQRlGGAKF 435
Cdd:PRK10490 857 VEVHGGTIWAENRPE-GGACF 876
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
172-433 5.37e-06

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 48.69  E-value: 5.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 172 WMFIMGIAIAGLMAIgfiWSARPLQRLDKEIKAIESGDIQEIKGLYPVELqtikADLNLLLESQQRQ---K---ERYRAS 245
Cdd:PRK11100 190 LLLGIALLIGAGVVW---WLNRSIRRLTRYADAVTEGKPVPLPKLGSSEL----RELAQALESMRVKlegKayvEQYVQT 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 246 LsdlAHALKTPLA-------VLKSSPLAND-----ADAQEQLDRINVMIEHQLKRAATGASDTWKKQTPI--KPVIDSIL 311
Cdd:PRK11100 263 L---THELKSPLAairgaaeLLQEDPPPEDrarftGNILTQSARLQQLIDRLLELARLEQRQELEVLEPValAALLEELV 339
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 312 SAMGKVYRDKDIIFNCKVSDkDYFLGDkTDLMEL-LGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIqPD-K 386
Cdd:PRK11100 340 EAREAQAAAKGITLRLRPDD-ARVLGD-PFLLRQaLGNLLDNAIDFSPEGGTITLSaevDGEQVALSVEDQGPGI-PDyA 416
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 639351759 387 RESLLQRG---TRLDTYESGHGVGMAIVSDLVKSYHGLLTIsHSQRLGGA 433
Cdd:PRK11100 417 LPRIFERFyslPRPANGRKSTGLGLAFVREVARLHGGEVTL-RNRPEGGV 465
KinE COG5809
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ...
250-439 1.51e-05

Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444511 [Multi-domain]  Cd Length: 489  Bit Score: 47.28  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 250 AHALKTPLAVLKS-----SPLANDADAQ------EQLDRINVMIEHQLKRAATGASDTwkKQTPIKPVIDSILSAMGKVY 318
Cdd:COG5809  278 AHEIRNPLTSLKGfiqllKDTIDEEQKTyldimlSELDRIESIISEFLVLAKPQAIKY--EPKDLNTLIEEVIPLLQPQA 355
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 319 RDKDIIFNCKVSDK-DYFLGDKTDLMELLGNLIDNACKACRSQVSIDVSQAKT----LSISICDDGPGIQPDKRESLlqr 393
Cdd:COG5809  356 LLKNVQIELELEDDiPDILGDENQLKQVFINLLKNAIEAMPEGGNITIETKAEdddkVVISVTDEGCGIPEERLKKL--- 432
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 639351759 394 GTRL-DTYESGHGVGMAIVSDLVKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:COG5809  433 GEPFyTTKEKGTGLGLMVSYKIIEEHGGKITVE-SEVGKGTTFSITL 478
HATPase_Glnl-NtrB-like cd16918
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-428 2.42e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli GlnL (synonyms NtrB and NRII); This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs), similar to Escherichia coli GlnL/NtrB/NRII HK of the two-component regulatory system (TCS) GlnL/GlnG (NtrB-NtrC, or NRII-NRI), which regulates the transcription of genes encoding metabolic enzymes and permeases in response to carbon and nitrogen status in E. coli and related bacteria. Also included in this family are Rhodobacter capsulatus NtrB, Azospirillum brasilense NtrB, Vibrio alginolyticus NtrB, Rhizobium leguminosarum biovar phaseoli NtrB, and Herbaspirillum seropedicae NtrB. Escherichia coli GlnL/NtrB/NRII is both a kinase and a phosphatase, catalyzing the phosphorylation and dephosphorylation of GlnG/NtrC/NRI. The kinase and phosphatase activities of GlnL/NtrB/NRII are regulated by the PII signal transduction protein, which on binding to GlnL/NtrB/NRII, inhibits the kinase activity of GlnL/NtrB/NRII and activates the GlnL/NtrB/NRII phosphatase activity. Proteins having this HATPase domain also have a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also contain PAS sensor domain(s).


Pssm-ID: 340395 [Multi-domain]  Cd Length: 109  Bit Score: 43.16  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKAC---------RSQVSIDVSQAKT-----LSISICDDGPGIQPDKRESLLQrgTRLDTYESGHGVG 407
Cdd:cd16918    1 LIQVFLNLVRNAAQALagsggeiilRTRTQRQVTLGHPrhrlaLRVSVIDNGPGIPPDLQDTIFY--PMVSGRENGTGLG 78
                         90       100
                 ....*....|....*....|.
gi 639351759 408 MAIVSDLVKSYHGLLTIsHSQ 428
Cdd:cd16918   79 LAIAQNIVSQHGGVIEC-DSQ 98
PRK11466 PRK11466
hybrid sensory histidine kinase TorS; Provisional
125-431 2.81e-05

hybrid sensory histidine kinase TorS; Provisional


Pssm-ID: 236914 [Multi-domain]  Cd Length: 914  Bit Score: 46.44  E-value: 2.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 125 NNTAYWQLSlTVILNNIDQ-----SEQARFI--LLKRNDALLRLMDGFKQTLVDWMFIMGIAiaGLMAIGFI-WS----- 191
Cdd:PRK11466 279 DSEISNHLQ-TLAQNNIAQfaqfsSEVSQLVdtIELRNQHGLAHLEKASARGQYSLLLLGMV--SLCALILIlWRvvyrs 355
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 192 -ARPLQRLDKEIKAIESGDIQ----EIKGLYpvELQTI----------------------------KADLN-LLLESQQR 237
Cdd:PRK11466 356 vTRPLAEQTQALQRLLDGDIDspfpETAGVR--ELDTIgrlmdafrsnvhalnrhreqlaaqvkarTAELQeLVIEHRQA 433
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 238 QKERYRAS------LSDLAHALKTPL-------AVLKSSPLANDA--------DAQEQLDRI-NVMIEHQLKRAatGASD 295
Cdd:PRK11466 434 RAEAEKASqaksafLAAMSHEIRTPLygilgtaQLLADNPALNAQrddlraitDSGESLLTIlNDILDYSAIEA--GGKN 511
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 296 TWKKQTPIKP--VIDSILSAMGKVYRDKDIIFNCKVSDK--DYFLGDKTDLMELLGNLIDNACKACRSQVSIDVSQAKTL 371
Cdd:PRK11466 512 VSVSDEPFEPrpLLESTLQLMSGRVKGRPIRLATDIADDlpTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTDGE 591
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639351759 372 S--ISICDDGPGIQPDKRESLLQRGTRLDTYESGHGVGMAIVSDLVKSYHGLLTISHSQRLG 431
Cdd:PRK11466 592 QwlVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVG 653
dpiB PRK15053
sensor histidine kinase DpiB; Provisional
338-431 4.37e-05

sensor histidine kinase DpiB; Provisional


Pssm-ID: 185013 [Multi-domain]  Cd Length: 545  Bit Score: 45.59  E-value: 4.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 338 DKTDLMELLGNLIDNACKAC------RSQVSIDVS-QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYESG-HGVGMA 409
Cdd:PRK15053 429 DSTEFAAIVGNLLDNAFEASlrsdegNKIVELFLSdEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGeHGIGLY 508
                         90       100
                 ....*....|....*....|..
gi 639351759 410 IVSDLVKSYHGLLTISHSQRLG 431
Cdd:PRK15053 509 LIASYVTRCGGVITLEDNDPCG 530
HATPase_c_5 pfam14501
GHKL domain; This family represents the structurally related ATPase domains of histidine ...
340-425 5.30e-05

GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 433996 [Multi-domain]  Cd Length: 102  Bit Score: 42.20  E-value: 5.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759  340 TDLMELLGNLIDNA---CKACRSQVSIDVS---QAKTLSISI---CDdgpgiqPDKRESLLQRGTRLDtyESGHGVGMAI 410
Cdd:pfam14501   4 VDLCVIFGNLLDNAieaCSKIDDNRFIRLKireKQNFLIIRIentYE------GELKFEGKLPSTKTK--GDGHGIGLKS 75
                          90
                  ....*....|....*
gi 639351759  411 VSDLVKSYHGLLTIS 425
Cdd:pfam14501  76 IRRIVKKYGGNLSTE 90
HATPase_BvrS-ChvG-like cd16953
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-438 5.57e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Brucella abortus BvrS and Sinorhizobium meliloti ChvG; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Brucella abortus BvrS of the BvrR-BvrS two-component regulatory system (TCS), which controls cell invasion and intracellular survival, as well as Sinorhizobium meliloti and Agrobacterium tumefaciens ChvG of the ChvI-ChvG TCS necessary for endosymbiosis and pathogenicity in plants. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), an accessory HAMP sensor domain, a periplasmic stimulus-sensing domain, and some also have a sensor N-terminal transmembrane domain.


Pssm-ID: 340429 [Multi-domain]  Cd Length: 110  Bit Score: 42.17  E-value: 5.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACK-ACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQR----GTRLDTYESGHGVGMAIVSD 413
Cdd:cd16953    1 LGQVLRNLIGNAISfSPPDTGRITVSampTGKMVTISVEDEGPGIPQEKLESIFDRfyteRPANEAFGQHSGLGLSISRQ 80
                         90       100
                 ....*....|....*....|....*...
gi 639351759 414 LVKSYHGLLT---ISHSQRLGGAKFILE 438
Cdd:cd16953   81 IIEAHGGISVaenHNQPGQVIGARFTVQ 108
HATPase_EcPhoR-like cd16952
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
342-439 4.52e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoR; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli or Vibrio cholera PhoR, the histidine kinase (HK) of PhoB-PhoR a two-component signal transduction system (TCS) involved in phosphate regulation. PhoR monitors extracellular inorganic phosphate (Pi) availability and PhoB, the response regulator, regulates transcription of genes of the phosphate regulon. PhoR is a bifunctional histidine autokinase/phospho-PhoB phosphatase; in phosphate deficiency, it autophosphorylates and Pi is transferred to PhoB, and when environmental Pi is abundant, it removes the phosphoryl group from phosphorylated PhoB. Other roles of PhoB-PhoR TCS have been described, including motility, biofilm formation, intestinal colonization, and virulence in V. cholera. E.coli PhoR and Bacillus subtilis PhoR (whose HATPase domain belongs to a different family) sense very different signals in each bacterium. In E. coli the PhoR signal comes from phosphate transport mediated by the PstSCAB2 phosphate transporter and the PhoU chaperone-like protein while in B. subtilis, the PhoR activation signal comes from wall teichoic acid (WTA) metabolism.


Pssm-ID: 340428 [Multi-domain]  Cd Length: 108  Bit Score: 39.49  E-value: 4.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 342 LMELLGNLIDNACKACRSQVSIDVSQAKTLS---ISICDDGPGIQPDKRESLLQRGTRLDTY----ESGHGVGMAIVSDL 414
Cdd:cd16952    1 LRSAFSNLVSNAVKYTPPSDTITVRWSQEESgarLSVEDTGPGIPPEHIPRLTERFYRVDIErcrnTGGTGLGLAIVKHV 80
                         90       100
                 ....*....|....*....|....*
gi 639351759 415 VKSYHGLLTIShSQRLGGAKFILEF 439
Cdd:cd16952   81 MSRHDARLLIA-SELGKGSRFTCLF 104
PRK11360 PRK11360
two-component system sensor histidine kinase AtoS;
232-445 1.04e-03

two-component system sensor histidine kinase AtoS;


Pssm-ID: 236901 [Multi-domain]  Cd Length: 607  Bit Score: 41.49  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 232 LESQQRQKERYrASLSDL----AHALKTPLAVL-----------------KSSPLANdadaqEQLDRINVMIEHQLKRAA 290
Cdd:PRK11360 377 LQRRVARQERL-AALGELvagvAHEIRNPLTAIrgyvqiwrqqtsdppsqEYLSVVL-----REVDRLNKVIDQLLEFSR 450
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 291 TGASDTWKKQtpIKPVIDSILSAMGKVYRDKDIIFNCKV-SDKDYFLGDKTDLMELLGNLIDNACKAC--RSQVSIDVSQ 367
Cdd:PRK11360 451 PRESQWQPVS--LNALVEEVLQLFQTAGVQARVDFETELdNELPPIWADPELLKQVLLNILINAVQAIsaRGKIRIRTWQ 528
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 368 AK--TLSISICDDGPGIQPDkresLLQRgtRLD----TYESGHGVGMAIVSDLVKSYHGLLTIShSQRLGGAKFILEFNY 441
Cdd:PRK11360 529 YSdgQVAVSIEDNGCGIDPE----LLKK--IFDpfftTKAKGTGLGLALSQRIINAHGGDIEVE-SEPGVGTTFTLYLPI 601

                 ....
gi 639351759 442 HEKK 445
Cdd:PRK11360 602 NPQG 605
HATPase_YcbM-like cd16947
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
334-425 5.40e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis YcbM; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis YcbM, a HK of the two-component system YcbM-YcbL. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA).


Pssm-ID: 340423 [Multi-domain]  Cd Length: 125  Bit Score: 36.72  E-value: 5.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639351759 334 YFLGDKTDLMELLGNLIDNACKACRSQVSIDVS---QAKTLSISICDDGPGIQPDKRESLLQRGTRLDTYES----GHGV 406
Cdd:cd16947   13 YANANTEALQRILKNLISNAIKYGSDGKFLGMTlreDEKHVYIDIWDKGKGISETEKDHVFERLYTLEDSRNsakqGNGL 92
                         90
                 ....*....|....*....
gi 639351759 407 GMAIVSDLVKSYHGLLTIS 425
Cdd:cd16947   93 GLTITKRLAESMGGSIYVN 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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