NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|639365896|ref|WP_024605521|]
View 

MULTISPECIES: type IV conjugative transfer system protein TraL [unclassified Pseudoalteromonas]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TraL super family cl06278
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 15-102 9.38e-11

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


The actual alignment was detected with superfamily member pfam07178:

Pssm-ID: 446955  Cd Length: 90  Bit Score: 53.44  E-value: 9.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639365896   15 YLPIRVNEPMMVIFWDVDEVRPIILSFALGVPFDAINYAIPLGLAYFYIARKIKAKYAKGILSHMSWWHGALPMKSTRSM 94
Cdd:pfam07178   2 RIPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFLGLKAT 81


                  ....*...
gi 639365896   95 PDPLVREL 102
Cdd:pfam07178  82 PPSHIREL 89
 
Name Accession Description Interval E-value
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 15-102 9.38e-11

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 53.44  E-value: 9.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639365896   15 YLPIRVNEPMMVIFWDVDEVRPIILSFALGVPFDAINYAIPLGLAYFYIARKIKAKYAKGILSHMSWWHGALPMKSTRSM 94
Cdd:pfam07178   2 RIPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFLGLKAT 81


                  ....*...
gi 639365896   95 PDPLVREL 102
Cdd:pfam07178  82 PPSHIREL 89
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 17-100 2.00e-07

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 45.06  E-value: 2.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639365896   17 PIRVNEPMMVIFWDVDEVRPIILSFALGVPFDAINYAIPLGLAYF--YIARKIKAKYAKGILSHMSWWHGALPMKSTRSM 94
Cdd:TIGR02762   6 PKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGAAVMliWKLRRLKGGEGPNFLLHLFYWYLPASLNTLRAT 85


                  ....*.
gi 639365896   95 PDPLVR 100
Cdd:TIGR02762  86 PPSHKR 91
 
Name Accession Description Interval E-value
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 15-102 9.38e-11

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 53.44  E-value: 9.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639365896   15 YLPIRVNEPMMVIFWDVDEVRPIILSFALGVPFDAINYAIPLGLAYFYIARKIKAKYAKGILSHMSWWHGALPMKSTRSM 94
Cdd:pfam07178   2 RIPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFLGLKAT 81


                  ....*...
gi 639365896   95 PDPLVREL 102
Cdd:pfam07178  82 PPSHIREL 89
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 17-100 2.00e-07

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 45.06  E-value: 2.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639365896   17 PIRVNEPMMVIFWDVDEVRPIILSFALGVPFDAINYAIPLGLAYF--YIARKIKAKYAKGILSHMSWWHGALPMKSTRSM 94
Cdd:TIGR02762   6 PKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGAAVMliWKLRRLKGGEGPNFLLHLFYWYLPASLNTLRAT 85


                  ....*.
gi 639365896   95 PDPLVR 100
Cdd:TIGR02762  86 PPSHKR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH