NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|639483455|ref|WP_024655927|]
View 

MULTISPECIES: DoxX family protein [Pseudomonas]

Protein Classification

DoxX family protein( domain architecture ID 10611814)

DoxX family protein, an inner membrane protein, similar to Bacillus subtilis uncharacterized membrane protein YdgD

Gene Ontology:  GO:0005886
PubMed:  26067605

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 23-117 4.83e-06

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


:

Pssm-ID: 433313  Cd Length: 103  Bit Score: 42.17  E-value: 4.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639483455   23 LRLIAALAFLAAGGAKLAGVPMMVEIFDHIGLGQWFRTVTGLIEIVAAVALFIPVTIG-----LGGLLLAVTMCVAIFTH 97
Cdd:pfam13564   2 LTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALGLLLPLVGAprltpLAAAGLALLMIGAIATH 81

                          90       100
                  ....*....|....*....|..
gi 639483455   98 LFV--IGGSPVPAIFLLLVTAG 117
Cdd:pfam13564  82 LRRgdPPHVAFPAVLLALAAAV 103
 
Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 23-117 4.83e-06

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


Pssm-ID: 433313  Cd Length: 103  Bit Score: 42.17  E-value: 4.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639483455   23 LRLIAALAFLAAGGAKLAGVPMMVEIFDHIGLGQWFRTVTGLIEIVAAVALFIPVTIG-----LGGLLLAVTMCVAIFTH 97
Cdd:pfam13564   2 LTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALGLLLPLVGAprltpLAAAGLALLMIGAIATH 81

                          90       100
                  ....*....|....*....|..
gi 639483455   98 LFV--IGGSPVPAIFLLLVTAG 117
Cdd:pfam13564  82 LRRgdPPHVAFPAVLLALAAAV 103
 
Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 23-117 4.83e-06

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


Pssm-ID: 433313  Cd Length: 103  Bit Score: 42.17  E-value: 4.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639483455   23 LRLIAALAFLAAGGAKLAGVPMMVEIFDHIGLGQWFRTVTGLIEIVAAVALFIPVTIG-----LGGLLLAVTMCVAIFTH 97
Cdd:pfam13564   2 LTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALGLLLPLVGAprltpLAAAGLALLMIGAIATH 81

                          90       100
                  ....*....|....*....|..
gi 639483455   98 LFV--IGGSPVPAIFLLLVTAG 117
Cdd:pfam13564  82 LRRgdPPHVAFPAVLLALAAAV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH