|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-210 |
4.20e-66 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 206.45 E-value: 4.20e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM---TSLKKVRHHIGVLPE 78
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEdvaRDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLprKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTVFLT------ADEprftqpICTKTAFISEGKIVSSST 210
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSthyleeAER------LCDRVAIIDKGRIVADGT 214
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-206 |
1.23e-56 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 181.26 E-value: 1.23e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSG--TFIMMNMTSLKKVRHHIGVLPEY 79
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGeiTFDGKSYQKNIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 TDLYEGLTAIEHIAYLSKITGTRQKTsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:cd03268 81 PGFYPNLTARENLRLLARLLGIRKKR--IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639683928 160 ADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-205 |
1.89e-55 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 176.82 E-value: 1.89e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM---TSLKKVRHHIGVLPE 78
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKdikKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIaYLSKitgtrqktsyyeellefvglhryhqekvgaftpGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:cd03230 81 EPSLYENLTVRENL-KLSG---------------------------------GMKQRLALAQALLHDPELLILDEPTSGL 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639683928 159 DADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-236 |
1.07e-52 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 172.35 E-value: 1.07e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLK---KVRHHIGVLP 77
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKeprEARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLfdEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 156 ADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV-SSSTHPQEKTITSSTIRATFKHAWIDDE 234
Cdd:COG4555 161 NGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVaQGSLDELREEIGEENLEDAFVALIGSEE 240
|
..
gi 639683928 235 VK 236
Cdd:COG4555 241 GE 242
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-214 |
3.81e-48 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 159.98 E-value: 3.81e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKY--RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN----MTSLKKVRHHIGV 75
Cdd:cd03263 1 LQIRNLTKTYkkGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINgysiRTDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAYLSKITGTRQKTSYY--EELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEevELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 154 PFADIDADSILHIQRVIESLKfEGKTVFLT------ADEprftqpICTKTAFISEGKIVSSSThPQE 214
Cdd:cd03263 160 PTSGLDPASRRAIWDLILEVR-KGRSIILTthsmdeAEA------LCDRIAIMSDGKLRCIGS-PQE 218
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-214 |
1.19e-45 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 153.68 E-value: 1.19e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 4 TKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLK---KVRHHIGVLPEYT 80
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVReprEVRRRIGIVFQDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 DLYEGLTAIEHIAYLSKITGT-----RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:cd03265 83 SVDDELTGWENLYIHARLYGVpgaerRERI---DELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 156 ADIDADSILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:cd03265 160 IGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT-PEE 218
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-206 |
2.58e-43 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 146.95 E-value: 2.58e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGdIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN----MTSLKKVRHHIGVLP 77
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDgqdvLKQPQKLRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAY---LSKITGTRQKtSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:cd03264 79 QEFGVYPNFTVREFLDYiawLKGIPSKEVK-ARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 155 FADIDADSILHIQRVIESLKfEGKTVFL----TADeprfTQPICTKTAFISEGKIV 206
Cdd:cd03264 158 TAGLDPEERIRFRNLLSELG-EDRIVILsthiVED----VESLCNQVAVLNKGKLV 208
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-206 |
1.08e-42 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 145.50 E-value: 1.08e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHIGVLPEYTD 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 LYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:cd03269 81 LYPKMKVIDQLVYLAQLKGLkkEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639683928 160 ADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-183 |
2.26e-41 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 141.85 E-value: 2.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK----VRHHIGVL 76
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGE-VLWNGEPIRDaredYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAYLSKITGTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFT 160
|
170 180
....*....|....*....|....*..
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTVFLT 183
Cdd:COG4133 161 ALDAAGVALLAELIAAHLARGGAVLLT 187
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-276 |
2.52e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 144.48 E-value: 2.52e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLK-KVRHHIGVLPEY 79
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGE-VLWDGEPLDpEDRRRIGYLPEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 TDLYEGLTAIEHIAYLSKITG-----TRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:COG4152 80 RGLYPKMKVGEQLVYLARLKGlskaeAKRRA---DEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 155 FADIDADSILHIQRVIESLKFEGKTVFL------TADEprftqpICTKTAFISEGKIVSSSthpqektiTSSTIRATFKH 228
Cdd:COG4152 157 FSGLDPVNVELLKDVIRELAAKGTTVIFsshqmeLVEE------LCDRIVIINKGRKVLSG--------SVDEIRRQFGR 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 639683928 229 AWIDDEVKPVLTQYLQSVG-TDLVISDDETSLLIRSEAQVPAIIRAFVK 276
Cdd:COG4152 223 NTLRLEADGDAGWLRALPGvTVVEEDGDGAELKLEDGADAQELLRALLA 271
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
2-205 |
4.02e-41 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 141.77 E-value: 4.02e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHIGVLPEYTD 81
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 LYEGLTAIEHIAYLSKITGTrqKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAD 161
Cdd:TIGR03740 81 LYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 639683928 162 SILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:TIGR03740 159 GIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-182 |
3.18e-40 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 139.53 E-value: 3.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNmTSLKKVRHHIGVLP 77
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG-EPVTGPGPDRGYVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 -EYTdLYEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIAHRPDFIL 150
Cdd:cd03293 80 qQDA-LLPWLTVLDNVALGLELQGvpKAEARERAEELLELVGLsgfeNAYPHQLSG----GMRQRVALARALAVDPDVLL 154
|
170 180 190
....*....|....*....|....*....|...
gi 639683928 151 LDEPFADIDADSILHIQRVIESLKFE-GKTVFL 182
Cdd:cd03293 155 LDEPFSALDALTREQLQEELLDIWREtGKTVLL 187
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-210 |
6.32e-40 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 138.83 E-value: 6.32e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSL---KKVRHHIGVL 76
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLdgQDITKLpmhKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGlsKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 155 FADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSST 210
Cdd:cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT 216
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-182 |
2.58e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 135.55 E-value: 2.58e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM--NMTSLKkvRHHI---GV 75
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDgrDITGLP--PHRIarlGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 -----LPEytdLYEGLTAIEHIA----------YLSKITGT----------RQKTsyyEELLEFVGLHRYHQEKVGAFTP 130
Cdd:COG0411 82 artfqNPR---LFPELTVLENVLvaaharlgrgLLAALLRLprarreereaRERA---EELLERVGLADRADEPAGNLSY 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639683928 131 GMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLK-FEGKTVFL 182
Cdd:COG0411 156 GQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRdERGITILL 208
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-205 |
1.44e-36 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 129.92 E-value: 1.44e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYR----TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM--NMTSLKKV------ 69
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDgtDISKLSEKelaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYTDLYEGLTAIEHIAYLSKITGTRQKTS--YYEELLEFVGL-HRYHQeKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERreRAEELLERVGLgDRLNH-YPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESL-KFEGKTVFLTADEPRFTQpICTKTAFISEGKI 205
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-214 |
1.48e-36 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 130.53 E-value: 1.48e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSL---KKVRHHIG 74
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGR-IFLDgedITHLpmhKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLYEGLTAIEHI------AYLSKiTGTRQKTsyyEELLEFVGL-HRYHQeKVGAFTPGMKKRLGMAQAIAHRPD 147
Cdd:COG1137 82 YLPQEASIFRKLTVEDNIlavlelRKLSK-KEREERL---EELLEEFGItHLRKS-KAYSLSGGERRRVEIARALATNPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 148 FILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:COG1137 157 FILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGT-PEE 222
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-182 |
5.32e-36 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 128.71 E-value: 5.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN------MTSLKKVRHHIGV 75
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDgeditgLPPHEIARLGIGR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAylskITGTRQKTSYY----------------EELLEFVGLHRYHQEKVGAFTPGMKKRLGMA 139
Cdd:cd03219 80 TFQIPRLFPELTVLENVM----VAAQARTGSGLllararreereareraEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 639683928 140 QAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL 198
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-229 |
5.75e-36 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 129.05 E-value: 5.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVLPEYT 80
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGT-VRLFGKPPRRARRRIGYVPQRA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 DLYEG--LTAIE--------HIAYLSKITGT-RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:COG1121 85 EVDWDfpITVRDvvlmgrygRRGLFRRPSRAdREAV---DEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 150 LLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThpqEKTITSSTIRATFKHA 229
Cdd:COG1121 162 LLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPP---EEVLTPENLSRAYGGP 238
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-206 |
7.32e-36 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 127.87 E-value: 7.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYR----TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLK---KVRHHI 73
Cdd:cd03266 1 MITADALTKRFRdvkkTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKepaEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEYTDLYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLkgDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 152 DEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-223 |
6.19e-35 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 126.08 E-value: 6.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT-FIM------MNMTSLKKVRHHIGVLP 77
Cdd:cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEvLIDgedisgLSEAELYRLRRRMGMLF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAYLskitgTRQKTSYYEEL--------LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:cd03261 84 QSGALFDSLTVFENVAFP-----LREHTRLSEEEireivlekLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 150 LLDEPFADIDADSILHIQRVIESLKFE-GKTVFL-TADEPrFTQPICTKTAFISEGKIVSSSTHPQEKTITSSTIR 223
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMvTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVR 233
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-206 |
6.80e-35 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 125.32 E-value: 6.80e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSLKKVRHHIGVLPE 78
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDgrdVTGVPPERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYLSKITGTR--QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:cd03259 80 DYALFPHLTVAENIAFGLKLRGVPkaEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 639683928 157 DIDADSILHIQR-VIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03259 160 ALDAKLREELREeLKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-213 |
2.75e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 121.92 E-value: 2.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKV 69
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVdgtdltlLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYTDLYEGLTAIEHIAYLSKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPD 147
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAeiEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 148 FILLDEPFADIDA---DSILHIQRVIESlKFeGKTVFLTADEPRFTQPICTKTAFISEGKIVSSST------HPQ 213
Cdd:cd03258 161 VLLCDEATSALDPettQSILALLRDINR-EL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTveevfaNPQ 233
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-182 |
5.13e-33 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 121.74 E-value: 5.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVL 76
Cdd:COG1116 7 ALELRGVSKRFPTGgggvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGE-VLVDGKPVTGPGPDRGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 P-EYTdLYEGLTAIEHIAYLSKITGT-----RQKTsyyEELLEFVGL----HRYhqekvgaftP-----GMKKRLGMAQA 141
Cdd:COG1116 86 FqEPA-LLPWLTVLDNVALGLELRGVpkaerRERA---RELLELVGLagfeDAY---------PhqlsgGMRQRVAIARA 152
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639683928 142 IAHRPDFILLDEPFADIDADSILHIQRVIESL-KFEGKTVFL 182
Cdd:COG1116 153 LANDPEVLLMDEPFGALDALTRERLQDELLRLwQETGKTVLF 194
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-184 |
2.82e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 118.40 E-value: 2.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 3 HTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVLPEYTDL 82
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 --------YE----GLTA-IEHIAYLSKItgTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:cd03235 80 drdfpisvRDvvlmGLYGhKGLFRRLSKA--DKAKV---DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154
|
170 180 190
....*....|....*....|....*....|....*
gi 639683928 150 LLDEPFADIDADSILHIQRVIESLKFEGKTVFLTA 184
Cdd:cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVT 189
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-214 |
4.34e-31 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 116.15 E-value: 4.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSL-KKVRHHIGVL 76
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIddedISLLPLhARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAYLSKIT---GTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRddlSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 154 PFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT-PTE 223
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
5-204 |
1.12e-30 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 114.10 E-value: 1.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKY--RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM----TSLKKVRHHIGVLPE 78
Cdd:cd03225 3 KNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKdltkLSLKELRRKVGLVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDL-YEGLTAIEHIAY------LSKITgTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:cd03225 83 NPDDqFFGPTVEEEVAFglenlgLPEEE-IEERV---EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639683928 152 DEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGK 204
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-233 |
4.44e-30 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 113.54 E-value: 4.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT-------FIMMNMTSLKKVRHHI 73
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEilvdgqdITGLSEKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEYTDLYEGLTAIEHIAY-LskitgtRQKTSYYEEL--------LEFVGLhryhqEKVGAFTP-----GMKKRLGMA 139
Cdd:COG1127 85 GMLFQGGALFDSLTVFENVAFpL------REHTDLSEAEirelvlekLELVGL-----PGAADKMPselsgGMRKRVALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 140 QAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFE-GKTVFL-TADEPR-FTqpICTKTAFISEGKIVSSSThPQEkt 216
Cdd:COG1127 154 RALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVvTHDLDSaFA--IADRVAVLADGKIIAEGT-PEE-- 228
|
250
....*....|....*..
gi 639683928 217 itsstIRATfKHAWIDD 233
Cdd:COG1127 229 -----LLAS-DDPWVRQ 239
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-211 |
4.49e-29 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 112.59 E-value: 4.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRH---HIGVLPE 78
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHarqRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGlsAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEG-KIVSSSTH 211
Cdd:PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGrKIAEGAPH 223
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-274 |
4.92e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 112.86 E-value: 4.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLK-----KV 69
Cdd:COG1135 1 MIELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVdgVDLTALSerelrAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYTDLYEGLTAIEHIAYLSKITGT-----RQKTsyyEELLEFVGLhryhQEKVGAF----TPGMKKRLGMAQ 140
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVpkaeiRKRV---AELLELVGL----SDKADAYpsqlSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 141 AIAHRPDFILLDEPFADID---ADSILH-IQRVIESLkfeGKTVFLTADEPRFTQPICTKTAFISEGKIVSSST------ 210
Cdd:COG1135 154 ALANNPKVLLCDEATSALDpetTRSILDlLKDINREL---GLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPvldvfa 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639683928 211 HPQEKTiTSSTIRATFKHAWIDDEVKPVLTQYLQSVGTDLVISDDETsllirSEAQVPAIIRAF 274
Cdd:COG1135 231 NPQSEL-TRRFLPTVLNDELPEELLARLREAAGGGRLVRLTFVGESA-----DEPLLSELARRF 288
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-204 |
8.87e-29 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 108.43 E-value: 8.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF------IMMNMTSLKKVRHHIGV 75
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIlidgedLTDLEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAY-LSkitGtrqktsyyeellefvglhryhqekvgaftpGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:cd03229 81 VFQDFALFPHLTVLENIALgLS---G------------------------------GQQQRVALARALAMDPDVLLLDEP 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 639683928 155 FADIDADSILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGK 204
Cdd:cd03229 128 TSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-156 |
1.08e-28 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 107.35 E-value: 1.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT----FIMMNMTSLKKVRHHIGVLPEYTDLYEGLTAIEHI 92
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTilldGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTP----GMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:pfam00005 81 RLGLLLKGlsKREKDARAEEALEKLGLGDLADRPVGERPGtlsgGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
5-204 |
1.65e-28 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 106.95 E-value: 1.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM----TSLKKVRHHIGVLPEyt 80
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKdiakLPLEELRRRIGYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 dlyegltaiehiayLSKitgtrqktsyyeellefvglhryhqekvgaftpGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:cd00267 81 --------------LSG---------------------------------GQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 639683928 161 DSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGK 204
Cdd:cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1-206 |
5.23e-28 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 107.62 E-value: 5.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF-IMMNMTSLkkVRHHIGVLPEy 79
Cdd:cd03220 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVtVRGRVSSL--LGLGGGFNPE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 tdlyegLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:cd03220 99 ------LTGRENIYLNGRLLGlsRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 639683928 158 IDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-214 |
9.17e-28 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 107.03 E-value: 9.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYR-TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM----TSLKKVRHHIGVL 76
Cdd:COG1122 1 IELENLSFSYPgGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKditkKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTD--LYEGlTAIEHIAY------LSKITgTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDF 148
Cdd:COG1122 81 FQNPDdqLFAP-TVEEDVAFgpenlgLPREE-IRERV---EEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 149 ILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT-PRE 220
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-180 |
1.37e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 106.29 E-value: 1.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKV-AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKK-----VRHH 72
Cdd:COG2884 1 MIRFENVSKRYPGGReALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVngQDLSRLKRreipyLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 73 IGVLPEYTDLYEGLTAIEHIAYLSKITGTRQKTSYY--EELLEFVGLhryhQEKVGAFTP----GMKKRLGMAQAIAHRP 146
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRrvREVLDLVGL----SDKAKALPHelsgGEQQRVAIARALVNRP 156
|
170 180 190
....*....|....*....|....*....|....
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESLKFEGKTV 180
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINRRGTTV 190
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
6-211 |
1.82e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 106.07 E-value: 1.82e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 6 GLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM---TSLKKVRHHIGVLPEYTDL 82
Cdd:PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVpvpARARLARARIGVVPQFDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:PRK13536 126 DLEFTVRENLLVFGRYFGmsTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 639683928 161 DSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEG-KIVSSSTH 211
Cdd:PRK13536 206 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGrKIAEGRPH 257
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-226 |
2.54e-26 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 103.97 E-value: 2.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRH-----HIGV 75
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGE-VLLDGRDLASLSRrelarRIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIE--------HIAYLSKITGT-RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:COG1120 80 VPQEPPAPFGLTVRElvalgrypHLGLFGRPSAEdREAV---EEALERTGLEHLADRPVDELSGGERQRVLIARALAQEP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESL-KFEGKTVFLTADEP----RFtqpiCTKTAFISEGKIVSSSThPQEkTITSST 221
Cdd:COG1120 157 PLLLLDEPTSHLDLAHQLEVLELLRRLaRERGRTVVMVLHDLnlaaRY----ADRLVLLKDGRIVAQGP-PEE-VLTPEL 230
|
....*
gi 639683928 222 IRATF 226
Cdd:COG1120 231 LEEVY 235
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-206 |
1.23e-25 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 101.43 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKV 69
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFdgkdllkLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPE--YTDLYEGLTAIEHIAYLSKITGTRQKTSYYEE--LLEFVG-------LHRY-HQekvgaFTPGMKKRLG 137
Cdd:cd03257 81 RKEIQMVFQdpMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEavLLLLVGvglpeevLNRYpHE-----LSGGQRQRVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 138 MAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKT--VFLTADePRFTQPICTKTAFISEGKIV 206
Cdd:cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLtlLFITHD-LGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-206 |
2.57e-25 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 100.72 E-value: 2.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRT-KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKVRHHIGVL 76
Cdd:cd03256 4 ENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIdgtdinkLKGKALRQLRRQIGMI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHI-----AYLSKITGTRQKTSYYE-----ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:cd03256 84 FQQFNLIERLSVLENVlsgrlGRRSTWRSLFGLFPKEEkqralAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESL-KFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03256 164 KLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-186 |
2.62e-25 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 100.77 E-value: 2.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHHIGVLPEYTDL 82
Cdd:cd03300 4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLdgKDITNLPPHKRPVNTVFQNYAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGLTAIEHIAYLSKITGTRQKT--SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:cd03300 84 FPHLTVFENIAFGLRLKKLPKAEikERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
|
170 180
....*....|....*....|....*...
gi 639683928 161 DSILHIQRVIESLKFE-GKT-VFLTADE 186
Cdd:cd03300 164 KLRKDMQLELKRLQKElGITfVFVTHDQ 191
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-206 |
3.31e-25 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 104.60 E-value: 3.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK-----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKK 68
Cdd:COG1123 260 LLEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFdgkdltkLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVL---PeYTDLYEGLTAIEHIAY---LSKITGTRQKTSYYEELLEFVGL-----HRY-HQekvgaFTPGMKKRL 136
Cdd:COG1123 340 LRRRVQMVfqdP-YSSLNPRMTVGDIIAEplrLHGLLSRAERRERVAELLERVGLppdlaDRYpHE-----LSGGQRQRV 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 137 GMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFE-GKT-VFLTADEpRFTQPICTKTAFISEGKIV 206
Cdd:COG1123 414 AIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTyLFISHDL-AVVRYIADRVAVMYDGRIV 484
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-207 |
5.32e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 103.99 E-value: 5.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 4 TKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMnmtslKKVRhhIGVLPEYTDLY 83
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-----KGLR--IGYLPQEPPLD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EGLTAIEHI--------AYLSKITGTRQKTSYYEELLEFVG-LH--------------------------RYHQEKVGAF 128
Cdd:COG0488 74 DDLTVLDTVldgdaelrALEAELEELEAKLAEPDEDLERLAeLQeefealggweaearaeeilsglgfpeEDLDRPVSEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 129 TPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSIL----HIQRvieslkFEGKTVFLTADepR-FTQPICTKTAFISEG 203
Cdd:COG0488 154 SGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEwleeFLKN------YPGTVLVVSHD--RyFLDRVATRILELDRG 225
|
....
gi 639683928 204 KIVS 207
Cdd:COG0488 226 KLTL 229
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
5-160 |
5.56e-25 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 100.11 E-value: 5.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMN--MTSLKKVRHHIGVLPEYTDL 82
Cdd:cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGedATDVPVQERNVGFVFQHYAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGLTAIEHIAYLSKITGTRQKTSYYE------ELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIAHRPDFILLD 152
Cdd:cd03296 86 FRHMTVFDNVAFGLRVKPRSERPPEAEirakvhELLKLVQLdwlaDRYPAQLSG----GQRQRVALARALAVEPKVLLLD 161
|
....*...
gi 639683928 153 EPFADIDA 160
Cdd:cd03296 162 EPFGALDA 169
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
9-206 |
2.36e-24 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 98.23 E-value: 2.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-MNMTSLkkVRHHIGVLPEytdlyegLT 87
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVnGRVSAL--LELGAGFHPE-------LT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 88 AIEHIAYLSKITG-TRQKT-SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAD---- 161
Cdd:COG1134 105 GRENIYLNGRLLGlSRKEIdEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAfqkk 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 639683928 162 SilhiQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:COG1134 185 C----LARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLV 225
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-206 |
2.37e-24 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 98.02 E-value: 2.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 4 TKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGI-----SRPTSGTFIMMNM------TSLKKVRHH 72
Cdd:cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKdiydldVDVLELRRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 73 IGVLPEYTDLYEGlTAIEHIAYLSKITGTRQKTSYY---EELLEFVGLHRYHQEKVGAFT--PGMKKRLGMAQAIAHRPD 147
Cdd:cd03260 83 VGMVFQKPNPFPG-SIYDNVAYGLRLHGIKLKEELDervEEALRKAALWDEVKDRLHALGlsGGQQQRLCLARALANEPE 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 148 FILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADePRFTQPICTKTAFISEGKIV 206
Cdd:cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN-MQQAARVADRTAFLLNGRLV 219
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-205 |
6.24e-24 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 96.44 E-value: 6.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF------IMMNMTSLKKVRHHIGV 75
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIiidglkLTDDKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAY-LSKITGTRQKTSY--YEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEerALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 639683928 153 EPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-214 |
8.34e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 97.13 E-value: 8.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF----IMMNMTS--------LKK 68
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdITIDTARslsqqkglIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVLPEYTDLYEGLTAIEHI---AYLSKITGTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHR 145
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIiegPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 146 PDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSS------THPQE 214
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGpakalfADPQQ 237
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-205 |
8.45e-24 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 96.70 E-value: 8.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSL------KKVRHHIG 74
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNdpkvdeRLIRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLYEGLTAIEHIAY-------LSKITGTRQKtsyyEELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIA 143
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFgplrvrgASKEEAEKQA----RELLAKVGLaeraHHYPSELSG----GQQQRVAIARALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 144 HRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
16-210 |
1.02e-23 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 101.24 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM---TSLKKVRHHIGVLPEYTDLYEGLTAIEHI 92
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKdieTNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AYLSKITGTRQKTSY--YEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVI 170
Cdd:TIGR01257 1025 LFYAQLKGRSWEEAQleMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 639683928 171 esLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIVSSST 210
Cdd:TIGR01257 1105 --LKYRsGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-182 |
1.69e-23 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 96.21 E-value: 1.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKV-RHHI---GVL 76
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT-ILLRGQHIEGLpGHQIarmGVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTD--LYEGLTAIEH-------------IAYLSKITGTRQKTS----YYEELLEFVGLHRYHQEKVGAFTPGMKKRLG 137
Cdd:PRK11300 84 RTFQHvrLFREMTVIENllvaqhqqlktglFSGLLKTPAFRRAESealdRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 639683928 138 MAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFE-GKTVFL 182
Cdd:PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLL 209
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
8-180 |
1.77e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 95.17 E-value: 1.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 8 TKKY-RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLK--------KVRHHIGVLPE 78
Cdd:cd03292 7 TKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT-IRVNGQDVSdlrgraipYLRRKIGVVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:cd03292 86 DFRLLPDRNVYENVAFALEVTGVppREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165
|
170 180
....*....|....*....|....
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTV 180
Cdd:cd03292 166 NLDPDTTWEIMNLLKKINKAGTTV 189
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
5-185 |
2.36e-23 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 95.83 E-value: 2.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYR-TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLPEY 79
Cdd:cd03295 4 ENVTKRYGgGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIdgedIREQDPVELRRKIGYVIQQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 TDLYEGLTAIEHIAYLSKITG----TRQKTSYyeELLEFVGL------HRYHQEKVGaftpGMKKRLGMAQAIAHRPDFI 149
Cdd:cd03295 84 IGLFPHMTVEENIALVPKLLKwpkeKIRERAD--ELLALVGLdpaefaDRYPHELSG----GQQQRVGVARALAADPPLL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 639683928 150 LLDEPFADIDA-------DSILHIQRVIeslkfeGKT-VFLTAD 185
Cdd:cd03295 158 LMDEPFGALDPitrdqlqEEFKRLQQEL------GKTiVFVTHD 195
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-206 |
2.56e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 99.37 E-value: 2.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMnmtslKKVRhhIGVLP-EY 79
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLG-----ETVK--IGYFDqHQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 TDLYEGLTAIEHIAYLSKiTGTRQKTSYYeelLEFVGLHRYHQEK-VGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:COG0488 388 EELDPDKTVLDELRDGAP-GGTEQEVRGY---LGRFLFSGDDAFKpVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHL 463
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 639683928 159 DADSIlhiqRVIESL--KFEGkTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:COG0488 464 DIETL----EALEEAldDFPG-TVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-206 |
5.01e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 94.71 E-value: 5.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM---TSLKKVRHHIG-VLPEYTDLYE 84
Cdd:cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLvpwKRRKKFLRRIGvVFGQKTQLWW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADS 162
Cdd:cd03267 109 DLPVIDSFYLLAAIYDLppARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 639683928 163 ILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03267 189 QENIRNFLKEYNRErGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-251 |
1.09e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 95.64 E-value: 1.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLK-----KV 69
Cdd:PRK11153 1 MIELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVdgQDLTALSekelrKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYTDLYEGLTAIEHIAYLSKITGTRQK--TSYYEELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIA 143
Cdd:PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAeiKARVTELLELVGLsdkaDRYPAQLSG----GQKQRVAIARALA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 144 HRPDFILLDEPFADID---ADSIL----HIQRVIeslkfeGKTVFLTADEPRFTQPICTKTAFISEGKIVSSS------T 210
Cdd:PRK11153 157 SNPKVLLCDEATSALDpatTRSILellkDINREL------GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGtvsevfS 230
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 639683928 211 HPQEKTiTSSTIRATFkHAWIDDEVKPVLTQYLQSVGTDLV 251
Cdd:PRK11153 231 HPKHPL-TREFIQSTL-HLDLPEDYLARLQAEPTTGSGPLL 269
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-168 |
1.48e-22 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 95.55 E-value: 1.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSLKKVRHHIGVLP 77
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGR-ILLDgrdVTGLPPEKRNVGMVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 -EYtDLYEGLTAIEHIAY------LSKiTGTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:COG3842 84 qDY-ALFPHLTVAENVAFglrmrgVPK-AEIRARV---AELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLL 158
|
170 180
....*....|....*....|....*
gi 639683928 151 LDEPFADIDA-------DSILHIQR 168
Cdd:COG3842 159 LDEPLSALDAklreemrEELRRLQR 183
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
9-214 |
1.74e-22 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 93.86 E-value: 1.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKVR--------HHI 73
Cdd:cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIdgqdiaaMSRKELRELRrkkismvfQSF 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEytdlyegLTAIEHIAYLSKITG----TRQKTSyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:cd03294 112 ALLPH-------RTVLENVAFGLEVQGvpraEREERA--AEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 150 LLDEPFADID-------ADSILHIQRvieslKFEGKTVFLTADePRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:cd03294 183 LMDEAFSALDplirremQDELLRLQA-----ELQKTIVFITHD-LDEALRLGDRIAIMKDGRLVQVGT-PEE 247
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-206 |
3.38e-22 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 91.55 E-value: 3.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 3 HTKGLTKKY-RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMN-MTSLKKVRHHIGVLPEYT 80
Cdd:cd03226 1 RIENISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGkPIKAKERRKSIGYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 D--LYEGlTAIEHIAYLSKITGTRQKTSyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:cd03226 81 DyqLFTD-SVREELLLGLKELDAGNEQA--ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 639683928 159 DADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
16-180 |
1.19e-21 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 89.79 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM------MNMTSLKKVRHHIG-VLPEYTDLYEGLTA 88
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIdgepldYSRKGLLERRQRVGlVFQDPDDQLFAADV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IEHIAYLSKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHI 166
Cdd:TIGR01166 87 DQDVAFGPLNLGLSEAevERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
|
170
....*....|....
gi 639683928 167 QRVIESLKFEGKTV 180
Cdd:TIGR01166 167 LAILRRLRAEGMTV 180
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
5-213 |
1.28e-21 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 94.52 E-value: 1.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKY--RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK-----VRHHIGVLP 77
Cdd:COG2274 477 ENVSFRYpgDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGR-ILIDGIDLRQidpasLRRQIGVVL 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGlTAIEHiaylskITGTRQKTSYYE--ELLEFVGLHR--------YH---QEKVGAFTPGMKKRLGMAQAIAH 144
Cdd:COG2274 556 QDVFLFSG-TIREN------ITLGDPDATDEEiiEAARLAGLHDfiealpmgYDtvvGEGGSNLSGGQRQRLAIARALLR 628
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 145 RPDFILLDEPFADIDADSILHIQRVIESLkFEGKTVFLTADEPRFTQpICTKTAFISEGKIVSSSTHPQ 213
Cdd:COG2274 629 NPRILILDEATSALDAETEAIILENLRRL-LKGRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGTHEE 695
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
8-206 |
1.51e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 90.41 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 8 TKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF--IMMNMTSLKK--VRHHIGVLPEYTDLY 83
Cdd:cd03234 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSgqILFNGQPRKPdqFQKCVAYVRQDDILL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EGLTAIEHIAYLSKITGTRQKTSYY-EELLEFVGLHRYHQEKVG-----AFTPGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:cd03234 94 PGLTVRETLTYTAILRLPRKSSDAIrKKRVEDVLLRDLALTRIGgnlvkGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 639683928 158 IDADSILHIQRVIESLKFEGKTVFLTADEPR---FtqPICTKTAFISEGKIV 206
Cdd:cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRsdlF--RLFDRILLLSSGEIV 223
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
5-208 |
1.55e-21 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 89.03 E-value: 1.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM----TSLKKVRHHIGVLP--- 77
Cdd:cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKdlasLSPKELARKIAYVPqal 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDlyegltaIEHIAylskitgtrqktsyyeellefvglHRYHQEKVGaftpGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:cd03214 83 ELLG-------LAHLA------------------------DRPFNELSG----GERQRVLLARALAQEPPILLLDEPTSH 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 158 IDadsILHIQRVIESLK----FEGKTVFLTADEPRFTQPICTKTAFISEGKIVSS 208
Cdd:cd03214 128 LD---IAHQIELLELLRrlarERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-203 |
2.00e-21 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 94.31 E-value: 2.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKY--RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMN---MTSLKKVRHHIGV 75
Cdd:TIGR01257 1937 ILRLNELTKVYsgTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGksiLTNISDVHQNMGY 2016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAYLSKITGTR----QKTSYYEelLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPaeeiEKVANWS--IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 639683928 152 DEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEG 203
Cdd:TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
20-209 |
3.11e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 89.28 E-value: 3.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIhQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSL----KKV-----RHHIG-VLPEYTdLYEGLTAI 89
Cdd:cd03297 17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGT-IVLNGTVLfdsrKKInlppqQRKIGlVFQQYA-LFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 90 EHIAYLSKITGTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRV 169
Cdd:cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639683928 170 IESLK--FEGKTVFLTADePRFTQPICTKTAFISEGKIVSSS 209
Cdd:cd03297 174 LKQIKknLNIPVIFVTHD-LSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-160 |
3.72e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 89.45 E-value: 3.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHIGVLPEYTdLYEGLTAIEHIAY-L 95
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS-LLPWLTVRENIALaV 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 96 SKITGTRQKT---SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:TIGR01184 80 DRVLPDLSKSerrAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-206 |
5.08e-21 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 89.03 E-value: 5.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSL---KKVRHHIGVL 76
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFdgRDITGLpphERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHI---AYLSKITGTRQKtsyYEELLE-FVGLH-RYHQeKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:cd03224 81 PEGRRIFPELTVEENLllgAYARRRAKRKAR---LERVYElFPRLKeRRKQ-LAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 152 DEPFADIdADSILH-IQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03224 157 DEPSEGL-APKIVEeIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
11-180 |
1.35e-20 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 86.90 E-value: 1.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 11 YRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfimmnmtslkkVRHH----IGVLPEYTDLYEGL 86
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGT-----------VRRAggarVAYVPQRSEVPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 87 --TAIE--------HIAYLSKITgtRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:NF040873 71 plTVRDlvamgrwaRRGLWRRLT--RDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148
|
170 180
....*....|....*....|....
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTV 180
Cdd:NF040873 149 GLDAESRERIIALLAEEHARGATV 172
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-193 |
1.40e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 87.03 E-value: 1.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRhhigvlPEYTD 81
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE-VRWNGTPLAEQR------DEPHE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 --LYEG--------LTAIEHIAYLSKITGTRQKTSyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQA-IAHRPDFIL 150
Cdd:TIGR01189 74 niLYLGhlpglkpeLSALENLHFWAAIHGGAQRTI--EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLwLSRRPLWIL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 639683928 151 lDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPI 193
Cdd:TIGR01189 152 -DEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVEA 193
|
|
| PQQ_ABC_ATP |
TIGR03864 |
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of ... |
1-173 |
2.30e-20 |
|
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 274822 [Multi-domain] Cd Length: 236 Bit Score: 87.35 E-value: 2.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVR----HHIGVL 76
Cdd:TIGR03864 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQSGQ-ISVAGHDLRRAPraalARLGVV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGlsRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159
|
170
....*....|....*....
gi 639683928 155 FADIDADSILHIQRVIESL 173
Cdd:TIGR03864 160 TVGLDPASRAAITAHVRAL 178
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
9-214 |
2.89e-20 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 89.37 E-value: 2.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKY--RTKVAIDhIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSG--TFIMMNMTSLKKVRHHIGVLPEYTDLYE 84
Cdd:PRK10851 9 KKSfgRTQVLND-ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGhiRFHGTDVSRLHARDRKVGFVFQHYALFR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLTAIEHIAYLSKITGTRQKTSYYE------ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:PRK10851 88 HMTVFDNIAFGLTVLPRRERPNAAAikakvtQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 159 DADSILHIQRVI----ESLKFEGktVFLTADEPRFTQpICTKTAFISEGKIVSSSThPQE 214
Cdd:PRK10851 168 DAQVRKELRRWLrqlhEELKFTS--VFVTHDQEEAME-VADRVVVMSQGNIEQAGT-PDQ 223
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-185 |
7.05e-20 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 87.89 E-value: 7.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN----MTSLKkVRH-HIGVL 76
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGR-IVLNgrdlFTNLP-PRErRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAY-LSKITGT----RQKTsyyEELLEFVGL----HRYhqekvgaftP-----GMKKRLGMAQAI 142
Cdd:COG1118 81 FQHYALFPHMTVAENIAFgLRVRPPSkaeiRARV---EELLELVQLeglaDRY---------PsqlsgGQRQRVALARAL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESL--KFEGKTVFLTAD 185
Cdd:COG1118 149 AVEPEVLLLDEPFGALDAKVRKELRRWLRRLhdELGGTTVFVTHD 193
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-184 |
7.71e-20 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 84.36 E-value: 7.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKY--RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKV-----RHHIG 74
Cdd:cd03228 1 IEFKNVSFSYpgRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLdleslRKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLYEGlTAIEHIayLSkiTGTRQktsyyeellefvglhryhqekvgaftpgmkkRLGMAQAIAHRPDFILLDEP 154
Cdd:cd03228 80 YVPQDPFLFSG-TIRENI--LS--GGQRQ-------------------------------RIAIARALLRDPPILILDEA 123
|
170 180 190
....*....|....*....|....*....|
gi 639683928 155 FADIDADSILHIQRVIESLKfEGKTVFLTA 184
Cdd:cd03228 124 TSALDPETEALILEALRALA-KGKTVIVIA 152
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-206 |
8.34e-20 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 88.35 E-value: 8.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHHIGVLPE 78
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLdgVDLSHVPPYQRPINMMFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYlskitGTRQK-------TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:PRK11607 99 SYALFPHMTVEQNIAF-----GLKQDklpkaeiASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 152 DEPFADIDADSILHIQ-RVIESLKFEGKT-VFLTADEPRfTQPICTKTAFISEGKIV 206
Cdd:PRK11607 174 DEPMGALDKKLRDRMQlEVVDILERVGVTcVMVTHDQEE-AMTMAGRIAIMNRGKFV 229
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
5-160 |
9.53e-20 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 85.38 E-value: 9.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHHIG-VLPEYTd 81
Cdd:cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIggRDVTDLPPKDRDIAmVFQNYA- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 LYEGLTAIEHIAYLSKITGTRQKT--SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:cd03301 83 LYPHMTVYDNIAFGLKLRKVPKDEidERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
.
gi 639683928 160 A 160
Cdd:cd03301 163 A 163
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-184 |
1.44e-19 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 85.08 E-value: 1.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRtKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSLKKVRHHIGVLPE 78
Cdd:cd03299 1 LKVENLSKDWK-EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNgkdITNLPPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGLTAIEHIAYLSKITGTRQKTSYYE--ELLEFVG----LHRyhqeKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKvlEIAEMLGidhlLNR----KPETLSGGEQQRVAIARALVVNPKILLLD 154
|
170 180 190
....*....|....*....|....*....|..
gi 639683928 153 EPFADIDadsILHIQRVIESLKFEGKTVFLTA 184
Cdd:cd03299 155 EPFSALD---VRTKEKLREELKKIRKEFGVTV 183
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-226 |
1.44e-19 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 85.52 E-value: 1.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-----MNMTSLKKVRHHIGV 75
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVRlfgerRGGEDVWELRKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 L-PEYTDLY-EGLTAIEHIayLSKITGT-----------RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAI 142
Cdd:COG1119 83 VsPALQLRFpRDETVLDVV--LSGFFDSiglyreptdeqRERA---RELLELLGLAHLADRPFGTLSQGEQRRVLIARAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKT--VFLT--ADE-PRFTqpicTKTAFISEGKIVSSSthPQEKTI 217
Cdd:COG1119 158 VKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPtlVLVThhVEEiPPGI----THVLLLKDGRVVAAG--PKEEVL 231
|
....*....
gi 639683928 218 TSSTIRATF 226
Cdd:COG1119 232 TSENLSEAF 240
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-204 |
1.87e-19 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 82.50 E-value: 1.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfimmnmtslkkVRHHIGVlpeytd 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-----------VTWGSTV------ 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 lyegltaieHIAYLSKITGtrqktsyyeellefvglhryhqekvgaftpGMKKRLGMAQAIAHRPDFILLDEPFADIDAD 161
Cdd:cd03221 64 ---------KIGYFEQLSG------------------------------GEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 639683928 162 SILHIQRVIEslKFEGKTVFLTADEpRFTQPICTKTAFISEGK 204
Cdd:cd03221 105 SIEALEEALK--EYPGTVILVSHDR-YFLDQVATKIIELEDGK 144
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-160 |
2.22e-19 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 86.67 E-value: 2.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSLKKVRHHIGVLP 77
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGE-ILIGgrdVTDLPPKDRNIAMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAY-LsKITGT-----RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:COG3839 82 QSYALYPHMTVYENIAFpL-KLRKVpkaeiDRRV---REAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLL 157
|
....*....
gi 639683928 152 DEPFADIDA 160
Cdd:COG3839 158 DEPLSNLDA 166
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-182 |
7.47e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 83.39 E-value: 7.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFI-----MMNMTSLKKVRHHIGV 75
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVfdgkdITDWQTAKIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIA---YLSKITGTRQKTSYYEELleFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAmggFFAERDQFQERIKWVYEL--FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190
....*....|....*....|....*....|
gi 639683928 153 EPFADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
14-211 |
1.33e-18 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 85.58 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKV-----RHHIGVLPEYTDLYEGlTA 88
Cdd:COG4988 350 RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGS-ILINGVDLSDLdpaswRRQIAWVPQNPYLFAG-TI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IEHIAyLSKITGTRQKTsyyEELLEFVGLHRYHQE-------KVGA----FTPGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:COG4988 428 RENLR-LGRPDASDEEL---EAALEAAGLDEFVAAlpdgldtPLGEggrgLSGGQAQRLALARALLRDAPLLLLDEPTAH 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 639683928 158 IDADSILHIQRVIESLkFEGKTVFLTADEPRfTQPICTKTAFISEGKIVSSSTH 211
Cdd:COG4988 504 LDAETEAEILQALRRL-AKGRTVILITHRLA-LLAQADRILVLDDGRIVEQGTH 555
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-226 |
1.62e-18 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 84.89 E-value: 1.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVL 76
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVagddVEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDL---YEGLTAIE-----HIAYLSKITGTrqKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDF 148
Cdd:PRK09536 83 PQDTSLsfeFDVRQVVEmgrtpHRSRFDTWTET--DRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 149 ILLDEPFADIDadsILHIQRVIES---LKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSthPQEKTITSSTIRAT 225
Cdd:PRK09536 161 LLLDEPTASLD---INHQVRTLELvrrLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG--PPADVLTADTLRAA 235
|
.
gi 639683928 226 F 226
Cdd:PRK09536 236 F 236
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-210 |
2.17e-18 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 84.95 E-value: 2.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYR--TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPT---SGTFIMMNM----TSLKKVRH 71
Cdd:COG1123 4 LLEVRDLSVRYPggDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRdlleLSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 72 HIG-VLPEYTDLYEGLTAIEHIAYLSKITGT-----RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHR 145
Cdd:COG1123 84 RIGmVFQDPMTQLNPVTVGDQIAEALENLGLsraeaRARV---LELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 146 PDFILLDEPFADIDADSILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIVSSST 210
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
7-205 |
2.72e-18 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 82.32 E-value: 2.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 7 LTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVLP--------- 77
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS-IVVNGQTINLVRDKDGQLKvadknqlrl 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 ---------EYTDLYEGLTAIEHIAY-------LSKiTGTRQKTSYYeelLEFVGLHRYHQEKVGA-FTPGMKKRLGMAQ 140
Cdd:PRK10619 90 lrtrltmvfQHFNLWSHMTVLENVMEapiqvlgLSK-QEARERAVKY---LAKVGIDERAQGKYPVhLSGGQQQRVSIAR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 141 AIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-223 |
2.84e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 82.43 E-value: 2.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKY-RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF------IMMNMTSLKKVRHHI 73
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVlikgepIKYDKKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEYTD--LYeGLTAIEHIAY------LSKitgtRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHR 145
Cdd:PRK13639 81 GIVFQNPDdqLF-APTVEEDVAFgplnlgLSK----EEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 146 PDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQEKTITSSTIR 223
Cdd:PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT-PKEVFSDIETIR 232
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
6-268 |
3.38e-18 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 82.24 E-value: 3.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 6 GLTKKYRT-KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHH-IGVLPEYTD-- 81
Cdd:PRK15056 11 DVTVTWRNgHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNlVAYVPQSEEvd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 -----LYEGLTAIE---HIAYLSKITGTRQKTsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:PRK15056 91 wsfpvLVEDVVMMGrygHMGWLRRAKKRDRQI--VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 154 PFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFIsEGKIVSSSthPQEKTITSSTIRATFKHawidd 233
Cdd:PRK15056 169 PFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASG--PTETTFTAENLELAFSG----- 240
|
250 260 270
....*....|....*....|....*....|....*
gi 639683928 234 evkpVLTQYLQSVGTDLVISDDETSLLIRSEAQVP 268
Cdd:PRK15056 241 ----VLRHVALNGSEESIITDDERPFISHRPAAVQ 271
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-182 |
3.76e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 81.67 E-value: 3.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVLPEYT 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQNE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 DLYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:PRK11248 80 GLLPWRNVQDNVAFGLQLAGVekMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159
|
170 180
....*....|....*....|....*
gi 639683928 159 DADSILHIQRVIESLKFE-GKTVFL 182
Cdd:PRK11248 160 DAFTREQMQTLLLKLWQEtGKQVLL 184
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
9-205 |
3.84e-18 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 81.79 E-value: 3.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGtfimmnmtslkKVRHH--IGVLPEYTDLYEGL 86
Cdd:PRK13546 32 HKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-----------KVDRNgeVSVIAISAGLSGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 87 TAIEHIAYLSKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSIL 164
Cdd:PRK13546 101 TGIENIEFKMLCMGFKRKeiKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 639683928 165 HIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK13546 181 KCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-206 |
1.03e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.93 E-value: 1.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKY----RTKV-AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM------MNMTSLK-- 67
Cdd:TIGR03269 279 IIKVRNVSKRYisvdRGVVkAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdewVDMTKPGpd 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 68 ---KVRHHIGVLPEYTDLYEGLTAIEHIA-----------------YLSKITGTRQKtsYYEELLEfvglhRYHQEkvga 127
Cdd:TIGR03269 359 grgRAKRYIGILHQEYDLYPHRTVLDNLTeaiglelpdelarmkavITLKMVGFDEE--KAEEILD-----KYPDE---- 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 128 FTPGMKKRLGMAQAIAHRPDFILLDEPFADID-------ADSILHIQRVIEslkfegKTVFLTADEPRFTQPICTKTAFI 200
Cdd:TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDpitkvdvTHSILKAREEME------QTFIIVSHDMDFVLDVCDRAALM 501
|
....*.
gi 639683928 201 SEGKIV 206
Cdd:TIGR03269 502 RDGKIV 507
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-187 |
1.62e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.07 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVR-------HHIG 74
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGR-VLLNGGPLDFQRdsiarglLYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLyegLTAIEHIAYLSKITGTRQktsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:cd03231 80 HAPGIKTT---LSVLENLRFWHADHSDEQ----VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152
|
170 180 190
....*....|....*....|....*....|...
gi 639683928 155 FADIDADSILHIQRVIESLKFEGKTVFLTADEP 187
Cdd:cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-208 |
2.08e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 82.14 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHHIGVLPEYTDLYE 84
Cdd:PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT-ITINNINYNKLDHKLAAQLGIGIIYQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLTAIEHIAYLS----------KITGT--------RQKTSyyeELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:PRK09700 88 ELSVIDELTVLEnlyigrhltkKVCGVniidwremRVRAA---MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSS 208
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
17-205 |
3.07e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 77.26 E-value: 3.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLPEYTDLYEGlTAIEHI 92
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLdgadISQWDPNELGDHVGYLPQDDELFSG-SIAENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 ayLSKitGTRQktsyyeellefvglhryhqekvgaftpgmkkRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIES 172
Cdd:cd03246 97 --LSG--GQRQ-------------------------------RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
|
170 180 190
....*....|....*....|....*....|...
gi 639683928 173 LKFEGKTVFLTADEPRfTQPICTKTAFISEGKI 205
Cdd:cd03246 142 LKAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
5-205 |
5.15e-17 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 78.57 E-value: 5.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNmTSLKKVRHHIGVLPEYTDLYE 84
Cdd:PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT-APLAEAREDTRLMFQDARLLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLTAIEHIAyLSKITGTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSIL 164
Cdd:PRK11247 95 WKKVIDNVG-LGLKGQWRDAA---LQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639683928 165 HIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK11247 171 EMQDLIESLWQQhGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
5-159 |
6.52e-17 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 79.99 E-value: 6.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHHIG-VLPEYTd 81
Cdd:PRK09452 18 RGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLdgQDITHVPAENRHVNtVFQSYA- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 82 LYEGLTAIEHIAYlskitGTR-QKTSYYE------ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:PRK09452 97 LFPHMTVFENVAF-----GLRmQKTPAAEitprvmEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
|
....*
gi 639683928 155 FADID 159
Cdd:PRK09452 172 LSALD 176
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-206 |
1.00e-16 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 79.98 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKV---RHHI----GVLP 77
Cdd:TIGR03719 326 ENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVKLAYVdqsRDALdpnkTVWE 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYE----GLTAIEHIAYLSK--ITGTRQktsyyeellefvglhryhQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:TIGR03719 406 EISGGLDiiklGKREIPSRAYVGRfnFKGSDQ------------------QKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 152 DEPFADIDADSIlhiqRVIES--LKFEGKTVFLTADepR-FTQPICTKT-AFISEGKIV 206
Cdd:TIGR03719 468 DEPTNDLDVETL----RALEEalLNFAGCAVVISHD--RwFLDRIATHIlAFEGDSHVE 520
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-205 |
1.15e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 77.75 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFF----NIITGISRPTSGTFIMMNMTS--------LKK 68
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLrhlsGLITGDKSAGSHIELLGRTVQregrlardIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVLPEYTDLYEGLTAIEH--IAYLSKITGTRQKTSYYEEL--------LEFVGLHRYHQEKVGAFTPGMKKRLGM 138
Cdd:PRK09984 84 SRANTGYIFQQFNLVNRLSVLENvlIGALGSTPFWRTCFSWFTREqkqralqaLTRVGMVHFAHQRVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 139 AQAIAHRPDFILLDEPFADIDADSilhIQRVIESLK----FEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPES---ARIVMDTLRdinqNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-213 |
1.41e-16 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 76.88 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMT----SLKKVRHHIGVLPEYTDLYEGlTAI 89
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDirdiSRKSLRSMIGVVLQDTFLFSG-TIM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 90 EHIAY------------LSKITGtrqktsyyeeLLEFV-----GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:cd03254 95 ENIRLgrpnatdeevieAAKEAG----------AHDFImklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 153 EPFADIDADSILHIQRVIESLkFEGKTVFLTADEPRFTQPiCTKTAFISEGKIVSSSTHPQ 213
Cdd:cd03254 165 EATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDE 223
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-156 |
2.87e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 76.31 E-value: 2.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK------VRHHIG 74
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGS-VLFGGTDLTGldeheiARLGIG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 -------VlpeytdlYEGLTAIEHIAyLSKITG-----------TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRL 136
Cdd:COG4674 89 rkfqkptV-------FEELTVFENLE-LALKGDrgvfaslfarlTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWL 160
|
170 180
....*....|....*....|..
gi 639683928 137 --GMaqAIAHRPDFILLDEPFA 156
Cdd:COG4674 161 eiGM--LLAQDPKLLLLDEPVA 180
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
12-206 |
4.64e-16 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 77.87 E-value: 4.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 12 RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGtfimmnmtslkKVR---------------HHIGVL 76
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAG-----------SVRldgadlsqwdreelgRHIGYL 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGlTAIEHIAYLSKITGtrqktsyyEELLE---FVGLHR--------YHQEkVGA----FTPGMKKRLGMAQA 141
Cdd:COG4618 412 PQDVELFDG-TIAENIARFGDADP--------EKVVAaakLAGVHEmilrlpdgYDTR-IGEggarLSGGQRQRIGLARA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 142 IAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQpICTKTAFISEGKIV 206
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPSLLA-AVDKLLVLRDGRVQ 545
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
16-210 |
5.48e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 76.31 E-value: 5.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF----IMMNMTS----LKKVRHHIGVLPEY--TDLYEG 85
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdIVVSSTSkqkeIKPVRKKVGVVFQFpeSQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 86 lTAIEHIAYLSKITGTRQKTS--YYEELLEFVGLHRYHQEKVG-AFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADS 162
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAekIAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 639683928 163 ILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSST 210
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
16-211 |
9.19e-16 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 77.13 E-value: 9.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKV-----RHHIGVLPEYTDLYEGlTAIE 90
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGR-ILIDGVDIRDLtleslRRQIGVVPQDTFLFSG-TIRE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 91 HIAYlSKITGTRqktsyyEEL---LEFVGLHR--------YHQEkVG----AFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:COG1132 433 NIRY-GRPDATD------EEVeeaAKAAQAHEfiealpdgYDTV-VGergvNLSGGQRQRIAIARALLKDPPILILDEAT 504
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 156 ADIDADSILHIQRVIESLkFEGKTVFL---------TADEprftqpIctktAFISEGKIVSSSTH 211
Cdd:COG1132 505 SALDTETEALIQEALERL-MKGRTTIViahrlstirNADR------I----LVLDDGRIVEQGTH 558
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
19-206 |
1.17e-15 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 74.07 E-value: 1.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 19 HIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHHIGVLPEYTDLYEGLTAIEHIAyLS 96
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIngVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG-LG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 97 KITGTR---QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA---DSILhiQRVI 170
Cdd:cd03298 95 LSPGLKltaEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPalrAEML--DLVL 172
|
170 180 190
....*....|....*....|....*....|....*.
gi 639683928 171 ESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:cd03298 173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-276 |
1.28e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 75.51 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTK-KYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLK---KVRHHIG-VLPEY 79
Cdd:COG4586 25 KGLFRrEYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKrrkEFARRIGvVFGQR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 80 TDLYEGLTAIEHIAYLSKITGT-----RQKTSYYEELLEfvglhryhqekVGAF--TP------GMKKRLGMAQAIAHRP 146
Cdd:COG4586 105 SQLWWDLPAIDSFRLLKAIYRIpdaeyKKRLDELVELLD-----------LGELldTPvrqlslGQRMRCELAAALLHRP 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESLKFE-GKTVFLT----ADeprfTQPICTKTAFISEGKIV--SSSTHPQEKTITS 219
Cdd:COG4586 174 KILFLDEPTIGLDVVSKEAIREFLKEYNRErGTTILLTshdmDD----IEALCDRVIVIDHGRIIydGSLEELKERFGPY 249
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 220 STIRATFKHAWIDDEvkpvltqyLQSVGTDLVISDDETSLLIRSEAQVPAIIRAFVK 276
Cdd:COG4586 250 KTIVLELAEPVPPLE--------LPRGGEVIEREGNRVRLEVDPRESLAEVLARLLA 298
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
20-196 |
1.77e-15 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 73.73 E-value: 1.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVR--HHIGVLPEYTDLYEGLTAIEHIAYLSK 97
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDrsRFMAYLGHLPGLKADLSTLENLHFLCG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 98 ITGTRQKTSyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEG 177
Cdd:PRK13543 109 LHGRRAKQM-PGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
|
170
....*....|....*....
gi 639683928 178 KTVFLTADEPRFTQPICTK 196
Cdd:PRK13543 188 GAALVTTHGAYAAPPVRTR 206
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
5-206 |
2.07e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 74.74 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKV-----AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF--------------------- 58
Cdd:PRK13651 6 KNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkktkekekvle 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 59 -IMMNMTSLKKV------RHHIGVL---PEYtDLYEGlTAIEHIAYLSKITGTRQKTSY--YEELLEFVGL-HRYHQEKV 125
Cdd:PRK13651 86 kLVIQKTRFKKIkkikeiRRRVGVVfqfAEY-QLFEQ-TIEKDIIFGPVSMGVSKEEAKkrAAKYIELVGLdESYLQRSP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 126 GAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
.
gi 639683928 206 V 206
Cdd:PRK13651 244 I 244
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-183 |
2.55e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 72.91 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVR---------- 70
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRdeyhqdllyl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 -HHIGVLPEytdlyegLTAIEHIAYLSKITG--TRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQ-AIAHRP 146
Cdd:PRK13538 80 gHQPGIKTE-------LTALENLRFYQRLHGpgDDEAL---WEALAQVGLAGFEDVPVRQLSAGQQRRVALARlWLTRAP 149
|
170 180 190
....*....|....*....|....*....|....*..
gi 639683928 147 DFIlLDEPFADIDADSILHIQRVIESLKFEGKTVFLT 183
Cdd:PRK13538 150 LWI-LDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-166 |
2.85e-15 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 73.31 E-value: 2.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRT-KVAID---HIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFI-----MMNMTSLKKVR- 70
Cdd:PRK11629 5 LLQCDNLCKRYQEgSVQTDvlhNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIfngqpMSKLSSAAKAEl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 --HHIGVLPEYTDLYEGLTAIEHIAYLSKITGTR--QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:PRK11629 85 rnQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKpaEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164
|
170 180
....*....|....*....|...
gi 639683928 147 DFILLDEPFADID---ADSILHI 166
Cdd:PRK11629 165 RLVLADEPTGNLDarnADSIFQL 187
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-180 |
8.08e-15 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 70.54 E-value: 8.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN--MTSLKKVRHhigvlpeytdl 82
Cdd:cd03216 4 RGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDgkEVSFASPRD----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 yegltAIEHiaylskitgtrqktsyyeellefvGLHRYHQekvgaFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADS 162
Cdd:cd03216 72 -----ARRA------------------------GIAMVYQ-----LSVGERQMVEIARALARNARLLILDEPTAALTPAE 117
|
170
....*....|....*...
gi 639683928 163 ILHIQRVIESLKFEGKTV 180
Cdd:cd03216 118 VERLFKVIRRLRAQGVAV 135
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
18-159 |
8.67e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 72.49 E-value: 8.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 18 DHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKVRHHIGVLPEYTDLYEGLTAIE 90
Cdd:PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFdgenipaMSRSRLYTVRKRMSMLFQSGALFTDMNVFD 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 91 HIAYlskitGTRQKTSYYEEL--------LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK11831 104 NVAY-----PLREHTQLPAPLlhstvmmkLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
5-161 |
8.95e-15 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 73.60 E-value: 8.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT-FI---MMNMTSLKKvRHHIGVLPEYT 80
Cdd:PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQiFIdgeDVTHRSIQQ-RDICMVFQSYA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 dLYEGLTAIEHIAYLSKITGT-----RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:PRK11432 89 -LFPHMSLGENVGYGLKMLGVpkeerKQRV---KEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164
|
....*.
gi 639683928 156 ADIDAD 161
Cdd:PRK11432 165 SNLDAN 170
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-161 |
1.00e-14 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 71.36 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRP---TSGTfIMMN---MTSLKKVRHHIG 74
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGE-VLLNgrrLTALPAEQRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLYEGLTAIEHIAY-LSKITGTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:COG4136 80 ILFQDDLLFPHLSVGENLAFaLPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDE 159
|
....*...
gi 639683928 154 PFADIDAD 161
Cdd:COG4136 160 PFSKLDAA 167
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-180 |
1.07e-14 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 71.97 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVL 76
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLgdkpISMLSSRQLARRLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 PEYTDLYEGLTAIEHIAY-----------LS-----KITGTRQKTsyyeELLEFVglhryhQEKVGAFTPGMKKRLGMAQ 140
Cdd:PRK11231 82 PQHHLTPEGITVRELVAYgrspwlslwgrLSaednaRVNQAMEQT----RINHLA------DRRLTDLSGGQRQRAFLAM 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 639683928 141 AIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTV 180
Cdd:PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTV 191
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-180 |
1.09e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 73.90 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHH-IGV 75
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLdgepVRFRSPRDAQAAgIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIaYLSK-ITG--------TRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:COG1129 84 IHQELNLVPNLSVAENI-FLGRePRRgglidwraMRRRA---RELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDA 159
|
170 180 190
....*....|....*....|....*....|....
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESLKFEGKTV 180
Cdd:COG1129 160 RVLILDEPTASLTEREVERLFRIIRRLKAQGVAI 193
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-182 |
1.40e-14 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 71.55 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSL---KKVRHHIG 74
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGS-IRFDgedITGLpphRIARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTDLYEGLTAIEHI---AYLSKITGTRQKTsyYEELLE-FVGLH-RYHQeKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:COG0410 82 YVPEGRRIFPSLTVEENLllgAYARRDRAEVRAD--LERVYElFPRLKeRRRQ-RAGTLSGGEQQMLAIGRALMSRPKLL 158
|
170 180 190
....*....|....*....|....*....|....
gi 639683928 150 LLDEPFADIdADSILH-IQRVIESLKFEGKTVFL 182
Cdd:COG0410 159 LLDEPSLGL-APLIVEeIFEIIRRLNREGVTILL 191
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
20-208 |
1.42e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 70.63 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGIS--RPTSGTFI-----MMNMTSLKKVRHHIGVLPEYTDLYEGLTAiehi 92
Cdd:cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILfkgedITDLPPEERARLGIFLAFQYPPEIPGVKN---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 aylskitgtrqktsyyEELLEFVGlhryhqekVGaFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIES 172
Cdd:cd03217 95 ----------------ADFLRYVN--------EG-FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 639683928 173 LKFEGKTVFLTADEPR---FTQPicTKTAFISEGKIVSS 208
Cdd:cd03217 150 LREEGKSVLIITHYQRlldYIKP--DRVHVLYDGRIVKS 186
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
16-184 |
2.69e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 70.72 E-value: 2.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMT-----SLKKVRHHIGVLPEYTDLYEGlTAIE 90
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHdvrdyTLASLRRQIGLVSQDVFLFND-TVAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 91 HIAYlskitGTRQKTSyyEE---------LLEFV-----GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:cd03251 95 NIAY-----GRPGATR--EEveeaaraanAHEFImelpeGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATS 167
|
170 180
....*....|....*....|....*...
gi 639683928 157 DIDADSILHIQRVIESLkFEGKTVFLTA 184
Cdd:cd03251 168 ALDTESERLVQAALERL-MKNRTTFVIA 194
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
5-184 |
3.85e-14 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 72.32 E-value: 3.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYR-TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSL-----KKVRHHIGVLPE 78
Cdd:TIGR02857 325 SGVSVAYPgRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLadadaDSWRDQIAWVPQ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGlTAIEHIAyLSKITGTRqktSYYEELLEFVGLHRY-------HQEKVG----AFTPGMKKRLGMAQAIAHRPD 147
Cdd:TIGR02857 404 HPFLFAG-TIAENIR-LARPDASD---AEIREALERAGLDEFvaalpqgLDTPIGeggaGLSGGQAQRLALARAFLRDAP 478
|
170 180 190
....*....|....*....|....*....|....*....
gi 639683928 148 FILLDEPFADIDADSilhIQRVIESLK--FEGKTVFLTA 184
Cdd:TIGR02857 479 LLLLDEPTAHLDAET---EAEVLEALRalAQGRTVLLVT 514
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-154 |
5.45e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 70.85 E-value: 5.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKV----AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRP---TSGTfIMMN----------- 62
Cdd:COG0444 1 LLEVRNLKVYFPTRRgvvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGE-ILFDgedllklseke 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 63 ----------------MTSL---KKVRHHIGvlpeytdlyEGLtaIEHiAYLSKiTGTRQKTsyyEELLEFVGL------ 117
Cdd:COG0444 80 lrkirgreiqmifqdpMTSLnpvMTVGDQIA---------EPL--RIH-GGLSK-AEARERA---IELLERVGLpdperr 143
|
170 180 190
....*....|....*....|....*....|....*....
gi 639683928 118 -HRY-HQekvgaFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:COG0444 144 lDRYpHE-----LSGGMRQRVMIARALALEPKLLIADEP 177
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-180 |
5.94e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 71.60 E-value: 5.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMtslKKV---------RH 71
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGE-ILIDG---KPVrirsprdaiAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 72 HIGVLPEYTDLYEGLTAIEHIAYLSKITGT--------RQKTsyyEELLEfvglhRYH-----QEKVGAFTPGMKKRLGM 138
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGLEPTKGgrldrkaaRARI---RELSE-----RYGldvdpDAKVEDLSVGEQQRVEI 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 639683928 139 AQAIAHRPDFILLDEPFA---DIDADSILhiqRVIESLKFEGKTV 180
Cdd:COG3845 153 LKALYRGARILILDEPTAvltPQEADELF---EILRRLAAEGKSI 194
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-206 |
6.42e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 70.08 E-value: 6.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISR------PTSGTFIMMNMTSLK----KVRHHIGVLPEYTDLY 83
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQidaiKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EGLTAIEHIAYLSKITGTRQK---TSYYEELLEFVGLHRYHQEKVGA----FTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKEKreiKKIVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 639683928 157 DIDADSILHIQRVIESLKFEgKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-199 |
7.06e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 70.07 E-value: 7.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTS-----------GTFIMMNMTSLKKVR 70
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrvegrveffNQNIYERRVNLNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 HHIGVLPEYTDLYEgLTAIEHIAYLSKITGTRQKTSY---YEELLEFVGL-----HRYHQEKVgAFTPGMKKRLGMAQAI 142
Cdd:PRK14258 88 RQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIddiVESALKDADLwdeikHKIHKSAL-DLSGGQQQRLCIARAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESLKF--EGKTVFLTADEPRFTQpICTKTAF 199
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLrsELTMVIVSHNLHQVSR-LSDFTAF 223
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
16-205 |
9.36e-14 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 71.07 E-value: 9.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRhhigvlpeyTDLYEGLTAIEHIAYL 95
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS---------SGLNGQLTGIENIELK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 96 SKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESL 173
Cdd:PRK13545 110 GLMMGLTKEkiKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF 189
|
170 180 190
....*....|....*....|....*....|..
gi 639683928 174 KFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK13545 190 KEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-206 |
9.87e-14 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 69.01 E-value: 9.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAidHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHH---IGVLP 77
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGR-ILWNGQDLTALPPAerpVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAY-LS---KITGTRQKTsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQA-IAHRPdFILLD 152
Cdd:COG3840 78 QENNLFPHLTVAQNIGLgLRpglKLTAEQRAQ--VEQALERVGLAGLLDRLPGQLSGGQRQRVALARClVRKRP-ILLLD 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 153 EPFADIDA---DSILHIqrVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:COG3840 155 EPFSALDPalrQEMLDL--VDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIA 209
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-231 |
1.24e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 69.27 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM------NMTSLKKVRHHIG 74
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQgkpldySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VL---PEYTDLYEGLTAieHIAYLSKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:PRK13638 81 TVfqdPEQQIFYTDIDS--DIAFSLRNLGVPEAeiTRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 150 LLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQEKTITSSTI-RATFKH 228
Cdd:PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA-PGEVFACTEAMeQAGLTQ 237
|
...
gi 639683928 229 AWI 231
Cdd:PRK13638 238 PWL 240
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
14-159 |
1.31e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 69.31 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMT----SLKKVRHHIGVL---PEYtDLYE 84
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIdgVDITdkkvKLSDIRKKVGLVfqyPEY-QLFE 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 85 GlTAIEHIAYLSKITGTRQKTSY--YEELLEFVGLHRYHQEKVGAF--TPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK13637 99 E-TIEKDIAFGPINLGLSEEEIEnrVKRAMNIVGLDYEDYKDKSPFelSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-154 |
1.65e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 70.54 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfimmnmTSL--KKV-------RHHIGV 75
Cdd:NF033858 270 RGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGE------AWLfgQPVdagdiatRRRVGY 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIE----HiAYLSKITGTRQKtSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:NF033858 344 MSQAFSLYGELTVRQnlelH-ARLFHLPAAEIA-ARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLIL 421
|
...
gi 639683928 152 DEP 154
Cdd:NF033858 422 DEP 424
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-206 |
2.75e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 67.94 E-value: 2.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTF---FNIITGISRPT--------SGTFIMMNMTSLKKVR 70
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLELNEEArvegevrlFGRNIYSPDVDPIEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 HHIGVLPEYTDLYEGLTAIEHIAYLSKITGTRQKTSYYEELLEFVGLHRYHQEKV--------GAFTPGMKKRLGMAQAI 142
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVkdrlndypSNLSGGQRQRLVIARAL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESLKFEgKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
16-206 |
3.18e-13 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 67.23 E-value: 3.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK-----VRHHIGVLPEYTDLYEGlTAIE 90
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTDIRQldpadLRRNIGYVPQDVTLFYG-TLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 91 HIAyLSKITGTRQKTsyyEELLEFVGLHRY---H--------QEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:cd03245 97 NIT-LGAPLADDERI---LRAAELAGVTDFvnkHpngldlqiGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 639683928 160 ADSilhIQRVIESLK--FEGKTVFLTADEPRFTQpICTKTAFISEGKIV 206
Cdd:cd03245 173 MNS---EERLKERLRqlLGDKTLIIITHRPSLLD-LVDRIIVMDSGRIV 217
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-229 |
7.60e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 66.72 E-value: 7.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRH-----HIGV 75
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPaelarRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAyLSKITGTR---QKTSYYEELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIA----- 143
Cdd:PRK13548 81 LPQHSSLSFPFTVEEVVA-MGRAPHGLsraEDDALVAAALAQVDLahlaGRDYPQLSG----GEQQRVQLARVLAqlwep 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 144 -HRPDFILLDEPFADIDadsILHIQRVIESLK-F---EGKTVF-------LTAdepRFtqpiCTKTAFISEGKIVSSSTh 211
Cdd:PRK13548 156 dGPPRWLLLDEPTSALD---LAHQHHVLRLARqLaheRGLAVIvvlhdlnLAA---RY----ADRIVLLHQGRLVADGT- 224
|
250
....*....|....*...
gi 639683928 212 PQEkTITSSTIRATFKHA 229
Cdd:PRK13548 225 PAE-VLTPETLRRVYGAD 241
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
5-182 |
1.05e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 66.68 E-value: 1.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYR--TKvAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM----NMTSLKKVRHHIG-VLP 77
Cdd:PRK13647 8 EDLHFRYKdgTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMgrevNAENEKWVRSKVGlVFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAYLSKITGTRQK--TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:PRK13647 87 DPDDQVFSSTVWDDVAFGPVNMGLDKDevERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166
|
170 180
....*....|....*....|....*..
gi 639683928 156 ADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK13647 167 AYLDPRGQETLMEILDRLHNQGKTVIV 193
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-210 |
1.28e-12 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 65.92 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRT---KVAI-DHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLK--------K 68
Cdd:COG4181 8 IIELRGLTKTVGTgagELTIlKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGT-VRLAGQDLFaldedaraR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VR-HHIGV-------LPeytdlyeGLTAIEHIAYLSKITGTRQKTSYYEELLEFVGL-HRYHQekvgafTP-----GMKK 134
Cdd:COG4181 87 LRaRHVGFvfqsfqlLP-------TLTALENVMLPLELAGRRDARARARALLERVGLgHRLDH------YPaqlsgGEQQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 135 RLGMAQAIAHRPDFILLDEPFADIDADSilhIQRVIESLkFE-----GKTVFL-TADEP---RftqpiCTKTAFISEGKI 205
Cdd:COG4181 154 RVALARAFATEPAILFADEPTGNLDAAT---GEQIIDLL-FElnrerGTTLVLvTHDPAlaaR-----CDRVLRLRAGRL 224
|
....*
gi 639683928 206 VSSST 210
Cdd:COG4181 225 VEDTA 229
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-154 |
1.56e-12 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 65.87 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVR-----HHIGV 75
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGE-VLVDGLDVATTPsrelaKRLAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIAY----LSKITGTRQKTSYYEELLEFVGL----HRYHQEKVGaftpGMKKRLGMAQAIAHRPD 147
Cdd:COG4604 80 LRQENHINSRLTVRELVAFgrfpYSKGRLTAEDREIIDEAIAYLDLedlaDRYLDELSG----GQRQRAFIAMVLAQDTD 155
|
....*..
gi 639683928 148 FILLDEP 154
Cdd:COG4604 156 YVLLDEP 162
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-247 |
1.65e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 66.36 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKV-AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGV 75
Cdd:PRK13652 3 LIETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIrgepITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEH-IAYLSKITGTRQKTSYY--EELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:PRK13652 83 VFQNPDDQIFSPTVEQdIAFGPINLGLDEETVAHrvSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 153 EPFADIDADSILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQEKTITSSTIRATFkhawI 231
Cdd:PRK13652 163 EPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT-VEEIFLQPDLLARVH----L 237
|
250
....*....|....*.
gi 639683928 232 DDEVKPVLTQYLQSVG 247
Cdd:PRK13652 238 DLPSLPKLIRSLQAQG 253
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-229 |
2.38e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 65.48 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRT---------KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT--FIMMNMTSLKKV 69
Cdd:PRK10419 3 LLNVSGLSHHYAHgglsgkhqhQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNvsWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHH-------------IG-VLPEYT---DLYEGLtaiEHIAYLSKitgtRQKTSYYEELLEFVGLHRYHQEKV-GAFTPG 131
Cdd:PRK10419 83 QRKafrrdiqmvfqdsISaVNPRKTvreIIREPL---RHLLSLDK----AERLARASEMLRAVDLDDSVLDKRpPQLSGG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 132 MKKRLGMAQAIAHRPDFILLDEPFADIDadsiLHIQ----RVIESLKFEGKT--VFLTADePRFTQPICTKTAFISEGKI 205
Cdd:PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLD----LVLQagviRLLKKLQQQFGTacLFITHD-LRLVERFCQRVMVMDNGQI 230
|
250 260
....*....|....*....|....
gi 639683928 206 VsssthpQEKTITSSTiraTFKHA 229
Cdd:PRK10419 231 V------ETQPVGDKL---TFSSP 245
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
5-214 |
3.08e-12 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 66.21 E-value: 3.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTK-----KYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKVRHH 72
Cdd:PRK10070 27 QGLSKeqileKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIdgvdiakISDAELREVRRK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 73 -IGVLPEYTDLYEGLTAIEHIAYLSKITGTRQKTSYYEEL--LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFI 149
Cdd:PRK10070 107 kIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALdaLRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDIL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 150 LLDEPFADIdaDSILHIQRVIESLKFEGK---TVFLTADEPRFTQPICTKTAFISEGKIVSSSThPQE 214
Cdd:PRK10070 187 LMDEAFSAL--DPLIRTEMQDELVKLQAKhqrTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT-PDE 251
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-271 |
4.69e-12 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 65.53 E-value: 4.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFfNIITGISRPTSGTFIMMNMT---SLKKVRHHIGV-LP 77
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TwcaNRRALRRTIG*hRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIAYLSKITGTRQKTSYY--EELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:NF000106 93 VR*GRRESFSGRENLYMIGR*LDLSRKDARAraDELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 156 ADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSTHPQEKT-ITSSTIRATFKHAW-IDD 233
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTkVGGRTLQIRPAHAAeLDR 252
|
250 260 270
....*....|....*....|....*....|....*....
gi 639683928 234 EVKPVLTQYLQSV-GTDLVISDDETSLLIRSEAQVPAII 271
Cdd:NF000106 253 MVGAIAQAGLDGIaGATADHEDGVVNVPIVSDEQLSAVV 291
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-181 |
6.43e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 65.60 E-value: 6.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 24 IHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFimmnMTSLKkvrhhIGVLPEY-TDLYEGLTAiehiAYLSKITGTR 102
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV----DPELK-----ISYKPQYiKPDYDGTVE----DLLRSITDDL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 103 QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILH----IQRVIESlkfEGK 178
Cdd:PRK13409 429 GSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAvakaIRRIAEE---REA 505
|
...
gi 639683928 179 TVF 181
Cdd:PRK13409 506 TAL 508
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
6-154 |
6.47e-12 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 65.92 E-value: 6.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 6 GLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM--NMTSlkkVRHHIGVLPE--YT- 80
Cdd:NF033858 6 GVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLggDMAD---ARHRRAVCPRiaYMp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 -----DLYEGLTAIEHIAYLSKITG--TRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:NF033858 83 qglgkNLYPTLSVFENLDFFGRLFGqdAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDE 162
|
.
gi 639683928 154 P 154
Cdd:NF033858 163 P 163
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-159 |
7.35e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 65.53 E-value: 7.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKV-RHHIGVLPEYTdLY 83
Cdd:PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVdQSRDALDPNKT-VW 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 E----GLtaiEHI----------AYLSK--ITGTRQktsyyeellefvglhryhQEKVGAFTPGMKKRLGMAQAIAHRPD 147
Cdd:PRK11819 407 EeisgGL---DIIkvgnreipsrAYVGRfnFKGGDQ------------------QKKVGVLSGGERNRLHLAKTLKQGGN 465
|
170
....*....|..
gi 639683928 148 FILLDEPFADID 159
Cdd:PRK11819 466 VLLLDEPTNDLD 477
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-214 |
8.78e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 63.98 E-value: 8.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKY---RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHI 73
Cdd:PRK13650 4 IIEVKNLTFKYkedQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIdgdlLTEENVWDIRHKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEYTD-LYEGLTAIEHIAYLSKITGTRQKT--SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:PRK13650 84 GMVFQNPDnQFVGATVEDDVAFGLENKGIPHEEmkERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 151 LDEPFADIDADSILHIQRVIESLKFE-GKTVF-LTADEPRFTqpICTKTAFISEGKIVSSSThPQE 214
Cdd:PRK13650 164 LDEATSMLDPEGRLELIKTIKGIRDDyQMTVIsITHDLDEVA--LSDRVLVMKNGQVESTST-PRE 226
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
14-210 |
8.83e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 64.03 E-value: 8.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMT--------SLKKVRHHIGVL---PEyTDL 82
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITithktkdkYIRPVRKRIGMVfqfPE-SQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGLTAIEhIAYLSKITGT---RQKTSYYEELLEFvGLHRyhqeKVGAFTP-----GMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:PRK13646 99 FEDTVERE-IIFGPKNFKMnldEVKNYAHRLLMDL-GFSR----DVMSQSPfqmsgGQMRKIAIVSILAMNPDIIVLDEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 155 FADIDADSILHIQRVIESLKFE-GKTVFLTADEPRFTQPICTKTAFISEGKIVSSST 210
Cdd:PRK13646 173 TAGLDPQSKRQVMRLLKSLQTDeNKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
20-181 |
9.59e-12 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 64.99 E-value: 9.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFI----MMNMTSLKKVRHHIGVLpeYTD--LYEGLTAIEhia 93
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILldgkPVTAEQPEDYRKLFSAV--FTDfhLFDQLLGPE--- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 94 ylskitGTRQKTSYYEELLEFVGLhryhQEKVG---------AFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAdsil 164
Cdd:PRK10522 417 ------GKPANPALVEKWLERLKM----AHKLEledgrisnlKLSKGQKKRLALLLALAEERDILLLDEWAADQDP---- 482
|
170 180
....*....|....*....|..
gi 639683928 165 HIQRV-----IESLKFEGKTVF 181
Cdd:PRK10522 483 HFRREfyqvlLPLLQEMGKTIF 504
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
20-171 |
1.25e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 62.58 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIG----VLPEytdlyegLTAIEH 91
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLdggdIDDPDVAEACHYLGhrnaMKPA-------LTVAEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 92 IAYLSKITGTRQktSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQ-AIAHRPDFIlLDEPFADIDADSILHIQRVI 170
Cdd:PRK13539 94 LEFWAAFLGGEE--LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARlLVSNRPIWI-LDEPTAALDAAAVALFAELI 170
|
.
gi 639683928 171 E 171
Cdd:PRK13539 171 R 171
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
27-187 |
1.31e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 64.90 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 27 GDIFGLIGPKGAGKTTFFNIITG--ISRPTSGTFIMMNMTSLKKVRHHIGVLPEYTDLYEGLTAIEHIAYLSKI----TG 100
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGriQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLrlpkSL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 101 TRQ-KTSYYEELLEFVGLHRYHQEKVG-----AFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLK 174
Cdd:PLN03211 174 TKQeKILVAESVISELGLTKCENTIIGnsfirGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
|
170
....*....|...
gi 639683928 175 FEGKTVFLTADEP 187
Cdd:PLN03211 254 QKGKTIVTSMHQP 266
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-213 |
1.35e-11 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 63.11 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT-------FIMMNMTSLKKV---RHHIG 74
Cdd:PRK11124 6 NGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTlniagnhFDFSKTPSDKAIrelRRNVG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 -VLPEYtDLYEGLTAIEH-------IAYLSKitgtRQKTSYYEELLEFVGLhryhQEKVGAF----TPGMKKRLGMAQAI 142
Cdd:PRK11124 86 mVFQQY-NLWPHLTVQQNlieapcrVLGLSK----DQALARAEKLLERLRL----KPYADRFplhlSGGQQQRVAIARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV-----SSSTHPQ 213
Cdd:PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVeqgdaSCFTQPQ 232
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-182 |
1.40e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 63.57 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKY------RTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM-TSLKK----V 69
Cdd:PRK13633 4 MIKCKNVSYKYesneesTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLdTSDEEnlwdI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYTDLYEGLTAIEH-IAYLSKITGTRQKT--SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRP 146
Cdd:PRK13633 84 RNKAGMVFQNPDNQIVATIVEEdVAFGPENLGIPPEEirERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163
|
170 180 190
....*....|....*....|....*....|....*..
gi 639683928 147 DFILLDEPFADIDADSILHIQRVIESL-KFEGKTVFL 182
Cdd:PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELnKKYGITIIL 200
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
23-181 |
1.50e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.42 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 23 DIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMmnmtslkKVRhhIGVLPEY-TDLYEGLTaiehIAYLSKITGT 101
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDE-------DLK--ISYKPQYiSPDYDGTV----EEFLRSANTD 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 102 RQKTSYYE-ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILH----IQRVIESlkfE 176
Cdd:COG1245 429 DFGSSYYKtEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAvakaIRRFAEN---R 505
|
....*
gi 639683928 177 GKTVF 181
Cdd:COG1245 506 GKTAM 510
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-186 |
1.53e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 62.27 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK-----------V 69
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKdlctyqkqlcfV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPEYT-------DLYEGLTAIEhiaylskitgtrqktsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAI 142
Cdd:PRK13540 80 GHRSGINPYLTlrenclyDIHFSPGAVG-----------------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 639683928 143 AHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADE 186
Cdd:PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
1.78e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 63.72 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTK-----VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTS---------- 65
Cdd:PRK13631 21 ILRVKNLYCVFDEKqenelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIgdkknnheli 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 66 ----------LKKVRHHIGVL---PEYT---DLYEGLTAIEHIAYLSKITGTRQKTSYYeelLEFVGL-HRYHQEKVGAF 128
Cdd:PRK13631 101 tnpyskkiknFKELRRRVSMVfqfPEYQlfkDTIEKDIMFGPVALGVKKSEAKKLAKFY---LNKMGLdDSYLERSPFGL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 129 TPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSS 208
Cdd:PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257
|
..
gi 639683928 209 ST 210
Cdd:PRK13631 258 GT 259
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-214 |
1.85e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 64.05 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGIS--RPTSGT---------------------- 57
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRiiyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 58 ---------------FIMMNMTSLKKVRHHIGVLPEYT-DLYEGLTAIEHIAYLSKITGTRQKTSYYE--ELLEFVGL-H 118
Cdd:TIGR03269 81 pcpvcggtlepeevdFWNLSDKLRRRIRKRIAIMLQRTfALYGDDTVLDNVLEALEEIGYEGKEAVGRavDLIEMVQLsH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 119 RY-HQEKvgAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADS--ILHiQRVIESLKFEGKTVFLTADEPRFTQPICT 195
Cdd:TIGR03269 161 RItHIAR--DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTakLVH-NALEEAVKASGISMVLTSHWPEVIEDLSD 237
|
250
....*....|....*....
gi 639683928 196 KTAFISEGKIVSSSThPQE 214
Cdd:TIGR03269 238 KAIWLENGEIKEEGT-PDE 255
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
27-206 |
2.57e-11 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 63.91 E-value: 2.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 27 GDIFGLIGPKGAGKTTFFNIITGISRP--TSGTFIMMNMTSL-KKVRHHIGVLPEYTDLYEG-LTAIEHIAY-----LSK 97
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPKgvKGSGSVLLNGMPIdAKEMRAISAYVQQDDLFIPtLTVREHLMFqahlrMPR 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 98 ITGTRQKTSYYEELLEFVGLHRYHQEKVGA------FTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIE 171
Cdd:TIGR00955 131 RVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK 210
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 639683928 172 SLKFEGKTVFLTADEPR------FTQpICtktaFISEGKIV 206
Cdd:TIGR00955 211 GLAQKGKTIICTIHQPSselfelFDK-II----LMAEGRVA 246
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
17-225 |
2.78e-11 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 63.97 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKV-RHHIGVLPEYTDLYEGLTA 88
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVagqdvatLDADALAQLrREHFGFIFQRYHLLSHLTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IEH--IAYLSKITGTRQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHI 166
Cdd:PRK10535 104 AQNveVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 639683928 167 QRVIESLKFEGKTVFLTADEPRFTQPiCTKTAFISEGKIVSSSTHPQEKTITSSTIRAT 225
Cdd:PRK10535 184 MAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPAQEKVNVAGGTEPVV 241
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-214 |
3.42e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 62.32 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRT--KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF----IMMNMTSLKKVRHHIG 74
Cdd:PRK13632 7 MIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIkidgITISKENLKEIRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEYTD-LYEGLTAIEHIAY-LSKITGTRQK-TSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:PRK13632 87 IIFQNPDnQFIGATVEDDIAFgLENKKVPPKKmKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 152 DEPFADIDADSILHIQRVIESLKFEG-KTVF-LTADEPRFTQpiCTKTAFISEGKIVSSSThPQE 214
Cdd:PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRkKTLIsITHDMDEAIL--ADKVIVFSEGKLIAQGK-PKE 228
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-182 |
5.41e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 61.04 E-value: 5.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRT-KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT--FIMMNMTSLKK-----VRHH 72
Cdd:PRK10908 1 MIRFEHVSKAYLGgRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKiwFSGHDITRLKNrevpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 73 IGVLPEYTDLYEGLTAIEHIAYLSKITGT-----RQKTSyyeELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPD 147
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGAsgddiRRRVS---AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190
....*....|....*....|....*....|....*
gi 639683928 148 FILLDEPFADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLM 192
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-215 |
6.29e-11 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 61.21 E-value: 6.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTF---FN----IITGISrpTSGTFIMMNM------TSLKK 68
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNrmndLIPGAR--VEGEILLDGEdiydpdVDVVE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGV-------LPeytdlyeglTAI-EHIAYLSKITGTRQKtSYYEELLEF----VGL-----HRYHQekvgaftPG 131
Cdd:COG1117 90 LRRRVGMvfqkpnpFP---------KSIyDNVAYGLRLHGIKSK-SELDEIVEEslrkAALwdevkDRLKK-------SA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 132 MK------KRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKfegktvfltadePRFTQPICT---------- 195
Cdd:COG1117 153 LGlsggqqQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELK------------KDYTIVIVThnmqqaarvs 220
|
250 260
....*....|....*....|....*..
gi 639683928 196 -KTAFISEGKIVSSS------THPQEK 215
Cdd:COG1117 221 dYTAFFYLGELVEFGpteqifTNPKDK 247
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
5-211 |
9.86e-11 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 60.58 E-value: 9.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYR--TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLPE 78
Cdd:cd03252 4 EHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVdghdLALADPAWLRRQVGVVLQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGlTAIEHIAyLSKITGTRQKTSYYEELL---EFV-----GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:cd03252 84 ENVLFNR-SIRDNIA-LADPGMSMERVIEAAKLAgahDFIselpeGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 151 LDEPFADIDADSILHIQRVIESLkFEGKTVFLTADepRFTQPICT-KTAFISEGKIVSSSTH 211
Cdd:cd03252 162 FDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAH--RLSTVKNAdRIIVMEKGRIVEQGSH 220
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
5-171 |
2.29e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 60.43 E-value: 2.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMN--MTSLKKVRHHIGVLPEYTDL 82
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEkrMNDVPPAERGVGMVFQSYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGLTAIEHIAYLSKITGT-----RQKTSYYEELLEFVGLhryHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:PRK11000 87 YPHLSVAENMSFGLKLAGAkkeeiNQRVNQVAEVLQLAHL---LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
|
170
....*....|....
gi 639683928 158 IDAdsILHIQRVIE 171
Cdd:PRK11000 164 LDA--ALRVQMRIE 175
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
16-183 |
4.45e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 59.23 E-value: 4.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM-----TSLKKVRHHIGVL---PEYTdlYEGLT 87
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgdfSKLQGIRKLVGIVfqnPETQ--FVGRT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 88 AIEHIAY------LSKITgTRQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAD 161
Cdd:PRK13644 95 VEEDLAFgpenlcLPPIE-IRKRV---DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
|
170 180
....*....|....*....|..
gi 639683928 162 SILHIQRVIESLKFEGKTVFLT 183
Cdd:PRK13644 171 SGIAVLERIKKLHEKGKTIVYI 192
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
27-206 |
4.50e-10 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 57.95 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 27 GDIFGLIGPKGAGKTTFFNIITG--ISRPTSGTfIMMN--MTSLKKVRHHIGVLPEYTDLYEGLT---AIEHIAYLSKIT 99
Cdd:cd03213 35 GELTAIMGPSGAGKSTLLNALAGrrTGLGVSGE-VLINgrPLDKRSFRKIIGYVPQDDILHPTLTvreTLMFAAKLRGLS 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 100 GtrqktsyyeellefvglhryhqekvgaftpGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKT 179
Cdd:cd03213 114 G------------------------------GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRT 163
|
170 180 190
....*....|....*....|....*....|
gi 639683928 180 VFLTADEPR---FTQpiCTKTAFISEGKIV 206
Cdd:cd03213 164 IICSIHQPSseiFEL--FDKLLLLSQGRVI 191
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
6-159 |
5.17e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.05 E-value: 5.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 6 GLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGI--SRPTSGTFIMMNmtslkkvrhhigvlpeyTDLY 83
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAlkGTPVAGCVDVPD-----------------NQFG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EGLTAIEHIAylsKITGTRQKTsyyeELLEFVGL-------HRYHQekvgaFTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:COG2401 98 REASLIDAIG---RKGDFKDAV----ELLNAVGLsdavlwlRRFKE-----LSTGQKFRFRLALLLAERPKLLVIDEFCS 165
|
...
gi 639683928 157 DID 159
Cdd:COG2401 166 HLD 168
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
15-161 |
6.45e-10 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 59.68 E-value: 6.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 15 VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHH-----IGVLPEYTDLYeGLTAI 89
Cdd:TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE-VTLDGVPVSSLDQDevrrrVSVCAQDAHLF-DTTVR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 90 EHIAyLSKITGTRQKTSyyeELLEFVGLHRYHQE-------KVG----AFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:TIGR02868 427 ENLR-LARPDATDEELW---AALERVGLADWLRAlpdgldtVLGeggaRLSGGERQRLALARALLADAPILLLDEPTEHL 502
|
...
gi 639683928 159 DAD 161
Cdd:TIGR02868 503 DAE 505
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
23-181 |
7.12e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 58.19 E-value: 7.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 23 DIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTslkkvrhhIGVLPEYTDL-YEGLTAiehiAYLSKITGT 101
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT--------VSYKPQYIKAdYEGTVR----DLLSSITKD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 102 RQKTSYYE-ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEG-KT 179
Cdd:cd03237 89 FYTHPYFKtEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNeKT 168
|
..
gi 639683928 180 VF 181
Cdd:cd03237 169 AF 170
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
16-206 |
8.59e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 58.32 E-value: 8.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM------TSLKKVRHHIGVLPEYTD--LYEGlT 87
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKpidysrKGLMKLRESVGMVFQDPDnqLFSA-S 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 88 AIEHIAYLSKITGTRQKTSY--YEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILH 165
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRkrVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639683928 166 IQR-VIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:PRK13636 180 IMKlLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-163 |
1.22e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 58.75 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT----------------F------ 58
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNvsldpnerlgklrqdqFafeeft 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 59 ----IMMNMTSLKKV---RHHIGVLPEYT--------DL------YEGLTAiehiaylskitgtrqkTSYYEELLEFVGL 117
Cdd:PRK15064 81 vldtVIMGHTELWEVkqeRDRIYALPEMSeedgmkvaDLevkfaeMDGYTA----------------EARAGELLLGVGI 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 639683928 118 H-RYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSI 163
Cdd:PRK15064 145 PeEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-206 |
1.40e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 57.48 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISR-----PTSGTfIMMN-------MTSLKK 68
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDlnpevTITGS-IVYNghniyspRTDTVD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVLPEYTDLYEgLTAIEHIAYLSKITGTRQK-------------TSYYEELLEfvglhRYHQEKVGaFTPGMKKR 135
Cdd:PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKqvldeavekslkgASIWDEVKD-----RLHDSALG-LSGGQQQR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 136 LGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKfEGKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
24-213 |
1.66e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 58.58 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 24 IHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKKVRHH-----IGVLPEYTDLYEGlTAIEHIAY---- 94
Cdd:TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHylhrqVALVGQEPVLFSG-SVRENIAYgltd 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 95 --LSKITGTRQKTSYYEELLEFV-GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSilhIQRVIE 171
Cdd:TIGR00958 582 tpDEEIMAAAKAANAHDFIMEFPnGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC---EQLLQE 658
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 639683928 172 SLKFEGKTVFLTADEPRFTQPiCTKTAFISEGKIVSSSTHPQ 213
Cdd:TIGR00958 659 SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQ 699
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-184 |
2.07e-09 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 56.35 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYR--TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLPE 78
Cdd:cd03244 6 KNVSLRYRpnLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIdgvdISKIGLHDLRSRISIIPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGlTAIEHIAYLSKITGtrqktsyyEEL---LEFVGLHRYHQEKVGA-----------FTPGMKKRLGMAQAIAH 144
Cdd:cd03244 86 DPVLFSG-TIRSNLDPFGEYSD--------EELwqaLERVGLKEFVESLPGGldtvveeggenLSVGQRQLLCLARALLR 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 639683928 145 RPDFILLDEPFADIDADSILHIQRVIESlKFEGKTVFLTA 184
Cdd:cd03244 157 KSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIA 195
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-181 |
2.13e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 57.89 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN-----MTSLKKVRHHIGVLpeYTD--LYEGLTAIEHI 92
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGE-ILLDgqpvtADNREAYRQLFSAV--FSDfhLFDRLLGLDGE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AYLSKItgtrqktsyyEELLEFVGLhryhQEKV----GAFTP-----GMKKRLGMAQAIAHRPDFILLDEPFADIDAdsi 163
Cdd:COG4615 428 ADPARA----------RELLERLEL----DHKVsvedGRFSTtdlsqGQRKRLALLVALLEDRPILVFDEWAADQDP--- 490
|
170 180
....*....|....*....|...
gi 639683928 164 lHIQRV-----IESLKFEGKTVF 181
Cdd:COG4615 491 -EFRRVfytelLPELKARGKTVI 512
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-201 |
2.26e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 56.71 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTF---FN----IITGISRPTSGTFIMMNMTSLK----KVR 70
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrcFNrlndLIPGFRVEGKVTFHGKNLYAPDvdpvEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 HHIGVL-----PEYTDLYEgltaieHIAYLSKITG------------TRQKTSYYE--ELLEFVGLhryhqekvgAFTPG 131
Cdd:PRK14243 91 RRIGMVfqkpnPFPKSIYD------NIAYGARINGykgdmdelversLRQAALWDEvkDKLKQSGL---------SLSGG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 132 MKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKfEGKTVFLTADEPRFTQPICTKTAFIS 201
Cdd:PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-EQYTIIIVTHNMQQAARVSDMTAFFN 224
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
14-182 |
2.59e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 56.76 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF------IMMNMTS--LKKVRHHIGVL---PEyTDL 82
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTItiagyhITPETGNknLKKLRKKVSLVfqfPE-AQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGlTAIEHIAYLSKITGTRQKTSYYEEL--LEFVGLhryhQEKVGAFTP-----GMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:PRK13641 99 FEN-TVLKDVEFGPKNFGFSEDEAKEKALkwLKKVGL----SEDLISKSPfelsgGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180
....*....|....*....|....*..
gi 639683928 156 ADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKAGHTVIL 200
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-180 |
3.56e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 57.23 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHiGVLP 77
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIdgqeMRFASTTAALAA-GVAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLY---EgLTAIEHIaYL----SKITGTRQKTSYYE--ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDF 148
Cdd:PRK11288 84 IYQELHlvpE-MTVAENL-YLgqlpHKGGIVNRRLLNYEarEQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161
|
170 180 190
....*....|....*....|....*....|..
gi 639683928 149 ILLDEPFADIDADSILHIQRVIESLKFEGKTV 180
Cdd:PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVI 193
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-206 |
3.74e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 56.07 E-value: 3.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNI------------ITGISRPTSGTFIMMNMTSLKKV 69
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrlielypearVSGEVYLDGQDIFKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 70 RHHIGVLPeytDLYEGLTAIEHIAY---LSKITGTRQK-TSYYEELLEFVGLHRYHQEKVGA----FTPGMKKRLGMAQA 141
Cdd:PRK14247 84 VQMVFQIP---NPIPNLSIFENVALglkLNRLVKSKKElQERVRWALEKAQLWDEVKDRLDApagkLSGGQQQRLCIARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 142 IAHRPDFILLDEPFADIDADSILHIQRVIESLKFEgKTVFLTADEPRFTQPICTKTAFISEGKIV 206
Cdd:PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIV 224
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-213 |
9.13e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 55.99 E-value: 9.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK-----VRHHIGVLPEYTDLYEGlTAIE 90
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE-ILLNGQPIADyseaaLRQAISVVSQRVHLFSA-TLRD 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 91 HIAyLSKITGTRQKTSyyeELLEFVGLHRYHQEKVG----------AFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:PRK11160 433 NLL-LAAPNASDEALI---EVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 161 DSILHIQRVIESLkFEGKTVF-----LTADEpRFTQpICtktaFISEGKIVSSSTHPQ 213
Cdd:PRK11160 509 ETERQILELLAEH-AQNKTVLmithrLTGLE-QFDR-IC----VMDNGQIIEQGTHQE 559
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
16-207 |
1.12e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 55.01 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFI---------MMNMTSLKKVRHHIGVL---PEYTDLY 83
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdyaipanLKKIKEVKRLRKEIGLVfqfPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EglTAIEHIAYLSKITGTRQKTSYYE--ELLEFVGLHR-YHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:PRK13645 106 E--TIEKDIAFGPVNLGENKQEAYKKvpELLKLVQLPEdYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 639683928 161 DSILHIQRVIESL-KFEGKTVFLTADEPRFTQPICTKTAFISEGKIVS 207
Cdd:PRK13645 184 KGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
13-205 |
1.27e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.56 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 13 TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHIGVLP------------EYT 80
Cdd:PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPqpaleyvidgdrEYR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 81 DLYEGL-TAIEH-----IAYL-SKITGTRQKT--SYYEELLEFVGLHRYH-QEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:PRK10636 93 QLEAQLhDANERndghaIATIhGKLDAIDAWTirSRAASLLHGLGFSNEQlERPVSDFSGGWRMRLNLAQALICRSDLLL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 151 LDEPFADIDADSILHIQRVIESlkFEGkTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:PRK10636 173 LDEPTNHLDLDAVIWLEKWLKS--YQG-TLILISHDRDFLDPIVDKIIHIEQQSL 224
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
11-185 |
1.43e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.56 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 11 YRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHigvLPEYTDLYEglTAIE 90
Cdd:PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH---QLEFLRADE--SPLQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 91 HIAYLSKitgtrQKTSyyEELLEFVGLHRYHQEKV----GAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSilhI 166
Cdd:PRK10636 397 HLARLAP-----QELE--QKLRDYLGGFGFQGDKVteetRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM---R 466
|
170 180
....*....|....*....|
gi 639683928 167 QRVIESL-KFEGKTVFLTAD 185
Cdd:PRK10636 467 QALTEALiDFEGALVVVSHD 486
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-154 |
1.66e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 55.08 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTK-----------VAIDHIDLDIHQGDIFGLIGPKGAGKTTffniiTG--ISR--PTSGTFIM------ 60
Cdd:COG4172 276 LEARDLKVWFPIKrglfrrtvghvKAVDGVSLTLRRGETLGLVGESGSGKST-----LGlaLLRliPSEGEIRFdgqdld 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 61 -MNMTSLKKVRHHIGVLpeYTDLY--------------EGLTAieHIAYLSKitgtRQKTSYYEELLEFVGL-----HRY 120
Cdd:COG4172 351 gLSRRALRPLRRRMQVV--FQDPFgslsprmtvgqiiaEGLRV--HGPGLSA----AERRARVAEALEEVGLdpaarHRY 422
|
170 180 190
....*....|....*....|....*....|....*
gi 639683928 121 -HQekvgaFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:COG4172 423 pHE-----FSGGQRQRIAIARALILEPKLLVLDEP 452
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-170 |
1.71e-08 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 54.01 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTK------KYRTKVA---IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKK 68
Cdd:cd03248 6 DHLKGIVKfqnvtfAYPTRPDtlvLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLdgkpISQYEHKY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVLPEYTDLYEGlTAIEHIAY------LSKITGTRQKTSYYEELLEFV-GLHRYHQEKVGAFTPGMKKRLGMAQA 141
Cdd:cd03248 86 LHSKVSLVGQEPVLFAR-SLQDNIAYglqscsFECVKEAAQKAHAHSFISELAsGYDTEVGEKGSQLSGGQKQRVAIARA 164
|
170 180
....*....|....*....|....*....
gi 639683928 142 IAHRPDFILLDEPFADIDADSILHIQRVI 170
Cdd:cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQAL 193
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-208 |
1.82e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.22 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISrpTSGTF---IMMNMTSLKKV------RH 71
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY--PHGTWdgeIYWSGSPLKASnirdteRA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 72 HIGVLPEYTDLYEGLTAIEHIAYLSKITGTRQKTSYYEELLEFVGLHRYHQ-------EKVGAFTPGMKKRLGMAQAIAH 144
Cdd:TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQldadnvtRPVGDYGGGQQQLVEIAKALNK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 639683928 145 RPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSS 208
Cdd:TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-153 |
1.92e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 54.25 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYR--TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF----IMMNMTSLKKVRHHIGV 75
Cdd:PRK13635 6 IRVEHISFRYPdaATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTItvggMVLSEETVWDVRRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTD-LYEGLTAIEHIAY-LSKITGTR-QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:PRK13635 86 VFQNPDnQFVGATVQDDVAFgLENIGVPReEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD 165
|
.
gi 639683928 153 E 153
Cdd:PRK13635 166 E 166
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
20-180 |
3.21e-08 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 53.15 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGIS--RPTSGTFIMM--NMTSL---KKVRHHIGVL----PEYtdlyEGLTA 88
Cdd:COG0396 19 VNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDgeDILELspdERARAGIFLAfqypVEI----PGVSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IE--HIAYlSKITGTRQKT----SYYEELLEFVG-----LHRYhqekVGA-FTPGMKKRLGMAQAIAHRPDFILLDEPFA 156
Cdd:COG0396 95 SNflRTAL-NARRGEELSAreflKLLKEKMKELGldedfLDRY----VNEgFSGGEKKRNEILQMLLLEPKLAILDETDS 169
|
170 180
....*....|....*....|....
gi 639683928 157 DIDADSILHIQRVIESLKFEGKTV 180
Cdd:COG0396 170 GLDIDALRIVAEGVNKLRSPDRGI 193
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
19-159 |
3.73e-08 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 53.05 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 19 HIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---MTSLKKVRHHIGVLPEYTDLYEGLTAIEHIAY- 94
Cdd:PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNgqdHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLg 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 95 LS---KITGTRQKTsyYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK10771 96 LNpglKLNAAQREK--LHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
14-175 |
5.75e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.39 E-value: 5.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMmnmtslkkvrhhigvlPEYtdlyegltaiEHIA 93
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM----------------PEG----------EDLL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 94 YLSK----ITGT-RQKTSY--YEELlefvglhryhqekvgafTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHI 166
Cdd:cd03223 68 FLPQrpylPLGTlREQLIYpwDDVL-----------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
|
....*....
gi 639683928 167 QRVIESLKF 175
Cdd:cd03223 131 YQLLKELGI 139
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
14-159 |
5.88e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 52.71 E-value: 5.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMT--------SLKKVRHHIGVL---PEYtDL 82
Cdd:PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVitagkknkKLKPLRKKVGIVfqfPEH-QL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 83 YEGlTAIEHIAYLSKITGTRQKTSYY--EELLEFVGLhryhQEKVGAFTP-----GMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:PRK13634 99 FEE-TVEKDICFGPMNFGVSEEDAKQkaREMIELVGL----PEELLARSPfelsgGQMRRVAIAGVLAMEPEVLVLDEPT 173
|
....
gi 639683928 156 ADID 159
Cdd:PRK13634 174 AGLD 177
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
16-182 |
7.77e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 52.44 E-value: 7.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTS----LKKVRHHIGVL---PEyTDLYE 84
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVddtlITSTSknkdIKQIRKKVGLVfqfPE-SQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GlTAIEHIAYLSKITGTRQKTS--YYEELLEFVGLHRYHQEKvGAF--TPGMKKRLGMAQAIAHRPDFILLDEPFADIDA 160
Cdd:PRK13649 101 E-TVLKDVAFGPQNFGVSQEEAeaLAREKLALVGISESLFEK-NPFelSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180
....*....|....*....|..
gi 639683928 161 DSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK13649 179 KGRKELMTLFKKLHQSGMTIVL 200
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
13-210 |
9.21e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.44 E-value: 9.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 13 TKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMmnmtslkkVRHHIGVLPEYTDLYEGlTAIEHI 92
Cdd:PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------IRGSVAYVPQVSWIFNA-TVRENI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AYLSKITGTR-----QKTSYYEELLEFVGLHRYHQEKVGA-FTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAdsilHI 166
Cdd:PLN03232 700 LFGSDFESERywraiDVTALQHDLDLLPGRDLTEIGERGVnISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA----HV 775
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 639683928 167 QR-VIESL---KFEGKTVFLTADEPRFTqPICTKTAFISEGKIVSSST 210
Cdd:PLN03232 776 AHqVFDSCmkdELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGT 822
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
16-176 |
9.77e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 52.06 E-value: 9.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM----TSLKKVRHHIGVL---PEytDLYEGLTA 88
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQaitdDNFEKLRKHIGIVfqnPD--NQFVGSIV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IEHIAYlskitGTRQKTSYYEEL-------LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDAD 161
Cdd:PRK13648 102 KYDVAF-----GLENHAVPYDEMhrrvseaLKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
|
170
....*....|....*
gi 639683928 162 SILHIQRVIESLKFE 176
Cdd:PRK13648 177 ARQNLLDLVRKVKSE 191
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-174 |
1.16e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 52.02 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHID---LDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHI 73
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIdgelLTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 GVLPEYTD-LYEGLTAIEHIAYLSKITGT--RQKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:PRK13642 84 GMVFQNPDnQFVGATVEDDVAFGMENQGIprEEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163
|
170 180
....*....|....*....|....
gi 639683928 151 LDEPFADIDADSILHIQRVIESLK 174
Cdd:PRK13642 164 LDESTSMLDPTGRQEIMRVIHEIK 187
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
20-159 |
1.92e-07 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 50.93 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------MNMTSLKKVR-HHIGVLPEYTDLYEGLTAIEH 91
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLvgqplhqMDEEARAKLRaKHVGFVFQSFMLIPTLNALEN 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 92 IAYLSKITGTRQKTSYYE--ELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK10584 109 VELPALLRGESSRQSRNGakALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
10-187 |
2.13e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.03 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 10 KYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGisRPTSGTF----IMMNMTSLKKVRHHIGVLPEYTDLY-E 84
Cdd:TIGR00956 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVItggdRLVNGRPLDSSFQRSIGYVQQQDLHlP 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLT---AIEHIAYL--SKITGTRQKTSYYEELLEFVGLHRYHQEKVGafTPG------MKKRLGMAQAIAHRPDFIL-LD 152
Cdd:TIGR00956 850 TSTvreSLRFSAYLrqPKSVSKSEKMEYVEEVIKLLEMESYADAVVG--VPGeglnveQRKRLTIGVELVAKPKLLLfLD 927
|
170 180 190
....*....|....*....|....*....|....*
gi 639683928 153 EPFADIDADSILHIQRVIESLKFEGKTVFLTADEP 187
Cdd:TIGR00956 928 EPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQP 962
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
16-174 |
2.64e-07 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 51.25 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT-------FIMMNMTSLKKVRHHIGVLpeYTD----LYE 84
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEvawlgkdLLGMKDDEWRAVRSDIQMI--FQDplasLNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 85 GLTAIEHIA-----YLSKITGTRQKTSYYEELLEfVGL-----HRYHQEkvgaFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:PRK15079 114 RMTIGEIIAeplrtYHPKLSRQEVKDRVKAMMLK-VGLlpnliNRYPHE----FSGGQCQRIGIARALILEPKLIICDEP 188
|
170 180
....*....|....*....|.
gi 639683928 155 FADIDadsiLHIQ-RVIESLK 174
Cdd:PRK15079 189 VSALD----VSIQaQVVNLLQ 205
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-160 |
2.87e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.00 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKV-AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFimmnmtslkkvrhHIG--------- 74
Cdd:PRK11650 7 QAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-------------WIGgrvvnelep 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 -------VLPEYTdLYEGLTAIEHIAYLSKITGT-------R-QKTSYYEELLEFvgLHRYHQEKVGaftpGMKKRLGMA 139
Cdd:PRK11650 74 adrdiamVFQNYA-LYPHMSVRENMAYGLKIRGMpkaeieeRvAEAARILELEPL--LDRKPRELSG----GQRQRVAMG 146
|
170 180
....*....|....*....|.
gi 639683928 140 QAIAHRPDFILLDEPFADIDA 160
Cdd:PRK11650 147 RAIVREPAVFLFDEPLSNLDA 167
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
17-213 |
3.48e-07 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 50.23 E-value: 3.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFI----MMNMTSLKKVRHHIGVLPEYTDLYEGlTAIEHI 92
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILldgvDIRDLNLRWLRSQIGLVSQEPVLFDG-TIAENI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AY--LSKITGTRQKTSYYEELLEFV-GL-HRYHQEkVGA----FTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSIL 164
Cdd:cd03249 98 RYgkPDATDEEVEEAAKKANIHDFImSLpDGYDTL-VGErgsqLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 639683928 165 HIQRVIESLKfEGKTVFLTADepRFTqPI--CTKTAFISEGKIVSSSTHPQ 213
Cdd:cd03249 177 LVQEALDRAM-KGRTTIVIAH--RLS-TIrnADLIAVLQNGQVVEQGTHDE 223
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
14-174 |
3.76e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 51.00 E-value: 3.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISrPTSGTfIMMNMTSLKKV-----RHHIGVLPEYTDLYEGlTA 88
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKINGIELRELdpeswRKHLSWVGQNPQLPHG-TL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 89 IEHIAyLSKITGTRQKTsyyEELL------EFV-----GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFAD 157
Cdd:PRK11174 440 RDNVL-LGNPDASDEQL---QQALenawvsEFLpllpqGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTAS 515
|
170
....*....|....*..
gi 639683928 158 IDADSilhIQRVIESLK 174
Cdd:PRK11174 516 LDAHS---EQLVMQALN 529
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
23-182 |
3.76e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 49.11 E-value: 3.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 23 DIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfimmnmTSLKKVRhhIGVLPEYTDLYEGltaiehiaylskitgtr 102
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN------DEWDGIT--PVYKPQYIDLSGG----------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 103 qktsyyeELlefvglhryhqekvgaftpgmkKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEG-KTVF 181
Cdd:cd03222 76 -------EL----------------------QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGkKTAL 126
|
.
gi 639683928 182 L 182
Cdd:cd03222 127 V 127
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-207 |
5.94e-07 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 48.95 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKV--AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTF----IMMNMTSLKKVRHHIGVLPE 78
Cdd:cd03369 10 ENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIeidgIDISTIPLEDLRSSLTIIPQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 79 YTDLYEGltaiehiaylsKITGTRQKTSYYEELLEFVGLHRyhQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:cd03369 90 DPTLFSG-----------TIRSNLDPFDEYSDEEIYGALRV--SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 639683928 159 DADSILHIQRVIESLkFEGKTVFLTADEPRFTQPiCTKTAFISEGKIVS 207
Cdd:cd03369 157 DYATDALIQKTIREE-FTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
20-206 |
6.50e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 49.64 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 20 IDLDIHQGDIFGLIGPKGAGKTTFFNIITGisRP----TSGTFIMMNMTSLKK---VRHHIGVLPEYTDLYEgLTAIEHI 92
Cdd:CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPaykiLEGDILFKGESILDLepeERAHLGIFLAFQYPIE-IPGVSNA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 93 AYLSKITGTRQKTSYYEEL--LEF----------VG-----LHRYHQEkvgAFTPGMKKRLGMAQAIAHRPDFILLDEPF 155
Cdd:CHL00131 103 DFLRLAYNSKRKFQGLPELdpLEFleiineklklVGmdpsfLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETD 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 639683928 156 ADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPIctKTAFI---SEGKIV 206
Cdd:CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYI--KPDYVhvmQNGKII 231
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-118 |
7.28e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.05 E-value: 7.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLKKVRHH---IGV 75
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIggNPCARLTPAKAHqlgIYL 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 639683928 76 LPEYTDLYEGLTAIEHIAY-LSKITGTRQKTsyyEELLEFVGLH 118
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILFgLPKRQASMQKM---KQLLAALGCQ 131
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-180 |
1.09e-06 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 49.63 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRtkvaIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK------VRHHIG 74
Cdd:COG1129 256 VLEVEGLSVGGV----VRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGE-IRLDGKPVRIrsprdaIRAGIA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 VLPEytD-LYEGL------------TAIEHIAYLSKITGTRQKtsyyEELLEFVglhryhqEKVGAFTPGMKKRLG---- 137
Cdd:COG1129 331 YVPE--DrKGEGLvldlsirenitlASLDRLSRGGLLDRRRER----ALAEEYI-------KRLRIKTPSPEQPVGnlsg 397
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 639683928 138 -------MAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTV 180
Cdd:COG1129 398 gnqqkvvLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAV 447
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-177 |
1.24e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 49.54 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGIsRPtSGTF---IMMNMTSLKKvrHHI---- 73
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YP-HGTYegeIIFEGEELQA--SNIrdte 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 --GVLPEYTDL--YEGLTAIEHIAYLSKIT-GTR----QKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAH 144
Cdd:PRK13549 81 raGIAIIHQELalVKELSVLENIFLGNEITpGGImdydAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160
|
170 180 190
....*....|....*....|....*....|...
gi 639683928 145 RPDFILLDEPFADIDADSILHIQRVIESLKFEG 177
Cdd:PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHG 193
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
19-153 |
1.52e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 47.94 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 19 HIDLDIHQGDIFGLI------------GPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLKKVRHHIGVLPEYTDLYEGL 86
Cdd:PRK13541 6 QLQFNIEQKNLFDLSitflpsaityikGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEM 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 87 TAIEHIAYLSKITGTrqkTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:PRK13541 86 TVFENLKFWSEIYNS---AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-216 |
1.60e-06 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 49.01 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKKYRTKVaiDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMN---------MTSLKK------- 68
Cdd:PRK09700 269 RNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNgkdisprspLDAVKKgmayite 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 69 VRHHIGVLPEYtDLYEGLtAIEHIAYLSKITGT--------RQKTSYYEELLEFVGLHRYHQeKVGAFTPGMKKRLGMAQ 140
Cdd:PRK09700 346 SRRDNGFFPNF-SIAQNM-AISRSLKDGGYKGAmglfhevdEQRTAENQRELLALKCHSVNQ-NITELSGGNQQKVLISK 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639683928 141 AIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKIVSSSTHPQEKT 216
Cdd:PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMS 498
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
32-187 |
2.28e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 47.24 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 32 LIGPKGAGKTTFFNIITGisRPTSGTF---IMMNMTSLKK-VRHHIGVLpEYTDLYEGLTAIEhiaylskitgtrqktsy 107
Cdd:cd03232 38 LMGESGAGKTTLLDVLAG--RKTAGVItgeILINGRPLDKnFQRSTGYV-EQQDVHSPNLTVR----------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 108 yeELLEFVGLHRyhqekvgAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEP 187
Cdd:cd03232 98 --EALRFSALLR-------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
14-176 |
2.43e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 47.80 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFImmnmtslKKVRHHIGVLPE--YTDLYEGLTaieh 91
Cdd:PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-------RNGKLRIGYVPQklYLDTTLPLT---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 92 iayLSKITGTRQKTSYYEEL--LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRV 169
Cdd:PRK09544 86 ---VNRFLRLRPGTKKEDILpaLKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162
|
....*..
gi 639683928 170 IESLKFE 176
Cdd:PRK09544 163 IDQLRRE 169
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-252 |
2.44e-06 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 48.06 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLP 77
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLdgehIQHYASKEVARRIGLLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 EYTDLYEGLTAIEHIA---YLSKITGTRQKTSYYEEL---LEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILL 151
Cdd:PRK10253 88 QNATTPGDITVQELVArgrYPHQPLFTRWRKEDEEAVtkaMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 152 DEPFADIDADSILHIQRVIESLKFEgKTVFLTADEPRFTQPICTKTAFIS--EGKIVSSSThPQEkTITSSTIRATF--K 227
Cdd:PRK10253 168 DEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIAlrEGKIVAQGA-PKE-IVTAELIERIYglR 244
|
250 260
....*....|....*....|....*
gi 639683928 228 HAWIDDEVkpvltqylqsVGTDLVI 252
Cdd:PRK10253 245 CMIIDDPV----------AGTPLVV 259
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-177 |
2.87e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 48.46 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNM-TSLKKVRHH----IGV 75
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKeVTFNGPKSSqeagIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYEGLTAIEHIaYLSkitgtRQKTS---------YYEE---LLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIA 143
Cdd:PRK10762 84 IHQELNLIPQLTIAENI-FLG-----REFVNrfgridwkkMYAEadkLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 639683928 144 HRPDFILLDEP---FADIDADSILhiqRVIESLKFEG 177
Cdd:PRK10762 158 FESKVIIMDEPtdaLTDTETESLF---RVIRELKSQG 191
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-182 |
3.73e-06 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 48.10 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLT-KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMM-----NMTSLKKVRHHIGV 75
Cdd:COG3845 258 LEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDgeditGLSPRERRRLGVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEytD-LYEGL----TAIEHIAyLskitgtrqkTSYYEE------LLEFVGLHRYHQEKVGAF---TPGMKKRLG---- 137
Cdd:COG3845 338 IPE--DrLGRGLvpdmSVAENLI-L---------GRYRRPpfsrggFLDRKAIRAFAEELIEEFdvrTPGPDTPARslsg 405
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 639683928 138 -------MAQAIAHRPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:COG3845 406 gnqqkviLARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLL 457
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
8-182 |
4.36e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 46.31 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 8 TKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM-------------MNMTslkkVRHHI- 73
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVpgsiayvsqepwiQNGT----IRENIl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 74 -GvLPEYTDLYEglTAIEHIAYLSKItgtrqktsyyeELLEF-----VGlhryhqEKVGAFTPGMKKRLGMAQAIAHRPD 147
Cdd:cd03250 88 fG-KPFDEERYE--KVIKACALEPDL-----------EILPDgdlteIG------EKGINLSGGQKQRISLARAVYSDAD 147
|
170 180 190
....*....|....*....|....*....|....*.
gi 639683928 148 FILLDEPFADIDADSILHI-QRVIESLKFEGKTVFL 182
Cdd:cd03250 148 IYLLDDPLSAVDAHVGRHIfENCILGLLLNNKTRIL 183
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
27-187 |
4.49e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.92 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 27 GDIFGLIGPKGAGKTTFFNIITGisRPTSGtFIM--MNMTSLKKVRH---HIGVLPEYTDLYE-GLTAIEHIAY-----L 95
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEgdIRISGFPKKQEtfaRISGYCEQNDIHSpQVTVRESLIYsaflrL 982
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 96 SKITGTRQKTSYYEELLEFVGLHRYHQEKVGafTPGM-------KKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQR 168
Cdd:PLN03140 983 PKEVSKEEKMMFVDEVMELVELDNLKDAIVG--LPGVtglsteqRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1060
|
170
....*....|....*....
gi 639683928 169 VIESLKFEGKTVFLTADEP 187
Cdd:PLN03140 1061 TVRNTVDTGRTVVCTIHQP 1079
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
14-181 |
5.39e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 47.10 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRP-----TSGTFIMMNMTS--LKKVRHHIGVLPEYTD-LYEG 85
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnpnSKITVDGITLTAktVWDIREKVGIVFQNPDnQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 86 LTAIEHIAY-LSKITGTRQKT-SYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSI 163
Cdd:PRK13640 100 ATVGDDVAFgLENRAVPRPEMiKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179
|
170
....*....|....*....
gi 639683928 164 LHIQRVIESLKFE-GKTVF 181
Cdd:PRK13640 180 EQILKLIRKLKKKnNLTVI 198
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
26-159 |
5.83e-06 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 46.70 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 26 QGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSL-----KKVRHHIGVLPEYTDLYEGLTAIEHIAY------ 94
Cdd:PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE-ILLDAQPLeswssKAFARKVAYLPQQLPAAEGMTVRELVAIgrypwh 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 95 --LSKITGT-RQKTsyyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK10575 115 gaLGRFGAAdREKV---EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-57 |
6.25e-06 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 46.46 E-value: 6.25e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGT 57
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-159 |
6.54e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 47.39 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 5 KGLTKkyRT---KVAIDHIDLDIHQGDIFGLIGPKGAGKTTffniiTGISR----PTSGTFIM-------MNMTSLKKVR 70
Cdd:PRK15134 289 KGILK--RTvdhNVVVKNISFTLRPGETLGLVGESGSGKST-----TGLALlrliNSQGEIWFdgqplhnLNRRQLLPVR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 71 HHIGVLpeYTDLY--------------EGLTAieHIAYLSKitgtRQKTSYYEELLEFVGL-----HRYHQEkvgaFTPG 131
Cdd:PRK15134 362 HRIQVV--FQDPNsslnprlnvlqiieEGLRV--HQPTLSA----AQREQQVIAVMEEVGLdpetrHRYPAE----FSGG 429
|
170 180
....*....|....*....|....*...
gi 639683928 132 MKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLD 457
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
17-173 |
9.04e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 46.72 E-value: 9.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFImmnmtslkkvrhhigvLPeytdlyegltAIEHIAYLS 96
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA----------------RP----------AGARVLFLP 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 97 K----ITGT-RQKTSY-----------YEELLEFVGL----HRYHQE----KVgaFTPGMKKRLGMAQAIAHRPDFILLD 152
Cdd:COG4178 433 QrpylPLGTlREALLYpataeafsdaeLREALEAVGLghlaERLDEEadwdQV--LSLGEQQRLAFARLLLHKPDWLFLD 510
|
170 180
....*....|....*....|..
gi 639683928 153 EPFADIDADSILHI-QRVIESL 173
Cdd:COG4178 511 EATSALDEENEAALyQLLREEL 532
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
16-184 |
1.65e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 46.17 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM----MNMTSLKKVRHHIGVLPEYTDLYEGlTAIEH 91
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLdghdLRDYTLASLRNQVALVSQNVHLFND-TIANN 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 92 IAYLSKITGTRQ---KTSYYEELLEFV-----GLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSI 163
Cdd:PRK11176 437 IAYARTEQYSREqieEAARMAYAMDFInkmdnGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
|
170 180
....*....|....*....|.
gi 639683928 164 LHIQRVIESLKfEGKTVFLTA 184
Cdd:PRK11176 517 RAIQAALDELQ-KNRTSLVIA 536
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-199 |
3.22e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.13 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 26 QGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMNMTSLkkvrhhigvlpeytdlyegltaiehiaylskitgtrqkt 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI--------------------------------------- 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 106 syyEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVIES------LKFEGKT 179
Cdd:smart00382 42 ---LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELrlllllKSEKNLT 118
|
170 180
....*....|....*....|
gi 639683928 180 VFLTADEPRFTQPICTKTAF 199
Cdd:smart00382 119 VILTTNDEKDLGPALLRRRF 138
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
9-187 |
3.61e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 43.79 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 9 KKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPT---SGTFIMMNMTSLKKVRHHIGVLpeytdLYEG 85
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEI-----IYVS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 86 LTAIeHIAYLSkitgtrqktsyYEELLEFVGLHRYHQeKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILH 165
Cdd:cd03233 90 EEDV-HFPTLT-----------VRETLDFALRCKGNE-FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALE 156
|
170 180
....*....|....*....|...
gi 639683928 166 IQRVIESL-KFEGKTVFLTADEP 187
Cdd:cd03233 157 ILKCIRTMaDVLKTTTFVSLYQA 179
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
16-184 |
1.13e-04 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 43.41 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 16 AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMT--SLKKVRHHIGVL--------------- 76
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIdgTDIRtvTRASLRRNIAVVfqdaglfnrsiedni 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 77 ----PEYTD--LYEGLTAIEHIAYLSKitgtrqKTSYYEELlefVGlhryhqEKVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:PRK13657 430 rvgrPDATDeeMRAAAERAQAHDFIER------KPDGYDTV---VG------ERGRQLSGGERQRLAIARALLKDPPILI 494
|
170 180 190
....*....|....*....|....*....|....
gi 639683928 151 LDEPFADIDADSILHIQRVIESLKfEGKTVFLTA 184
Cdd:PRK13657 495 LDEATSALDVETEAKVKAALDELM-KGRTTFIIA 527
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-205 |
1.60e-04 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 42.89 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 17 IDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIMMN------MTSLKKVRHHIGVLPE-------YTDLY 83
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINgkpvdiRNPAQAIRAGIAMVPEdrkrhgiVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EG----LTAIEHIAYLSKITGTRQKTSYYEELlefvglhryHQEKVGAFTP---------GMKKRLGMAQAIAHRPDFIL 150
Cdd:TIGR02633 356 VGknitLSVLKSFCFKMRIDAAAELQIIGSAI---------QRLKVKTASPflpigrlsgGNQQKAVLAKMLLTNPRVLI 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 639683928 151 LDEPFADIDADSILHIQRVIESLKFEGKTVFLTADEPRFTQPICTKTAFISEGKI 205
Cdd:TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
31-246 |
1.89e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 43.04 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 31 GLIGPKGAGKTTFFNIITGISRPTSGTfIMMNMTSLKK-----VRHHIGVLPEYTDLYEGlTAIEHIAYLSKitgtRQKT 105
Cdd:PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKfgltdLRRVLSIIPQSPVLFSG-TVRFNIDPFSE----HNDA 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 106 SYYEellefvGLHRYHQEKV----------------GAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRV 169
Cdd:PLN03232 1340 DLWE------ALERAHIKDVidrnpfgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639683928 170 IESlKFEGKTVFLTADepRFTQPI-CTKTAFISEGKIVSSSThPQEktITSSTIRATFKHAwidDEVKPVLTQYLQSV 246
Cdd:PLN03232 1414 IRE-EFKSCTMLVIAH--RLNTIIdCDKILVLSSGQVLEYDS-PQE--LLSRDTSAFFRMV---HSTGPANAQYLSNL 1482
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-181 |
2.24e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 42.49 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 26 QGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFimMNMTSLKKV-RHHIG-VLPEY-TDLYEG-LTAIEHIAYLSKI--- 98
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDY--EEEPSWDEVlKRFRGtELQNYfKKLYNGeIKVVHKPQYVDLIpkv 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 99 -TGT-RQ------KTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADIDADSILHIQRVI 170
Cdd:PRK13409 176 fKGKvREllkkvdERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
|
170
....*....|.
gi 639683928 171 ESLKfEGKTVF 181
Cdd:PRK13409 256 RELA-EGKYVL 265
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
29-159 |
2.41e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 42.17 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 29 IFGLigpKGAGKTTFFNIITGISRPTSGtFIMMNMTSL----KKV-----RHHIG-------VLPEYT---DLYEGLTAI 89
Cdd:PRK11144 29 IFGR---SGAGKTSLINAISGLTRPQKG-RIVLNGRVLfdaeKGIclppeKRRIGyvfqdarLFPHYKvrgNLRYGMAKS 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 90 --EHIAYLSKITGTrqktsyyEELLEfvglhRYHQEKVGaftpGMKKRLGMAQAIAHRPDFILLDEPFADID 159
Cdd:PRK11144 105 mvAQFDKIVALLGI-------EPLLD-----RYPGSLSG----GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
15-153 |
3.34e-04 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 42.04 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 15 VAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGIsrptsgtFIMMNMTSLKKVRHHIGVLPEYTdlYEGL-TAIEHIA 93
Cdd:TIGR00954 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-------WPVYGGRLTKPAKGKLFYVPQRP--YMTLgTLRDQII 536
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 639683928 94 YLSKITGTRQK---TSYYEELLEFVGLHRYHQEKVG---------AFTPGMKKRLGMAQAIAHRPDFILLDE 153
Cdd:TIGR00954 537 YPDSSEDMKRRglsDKDLEQILDNVQLTHILEREGGwsavqdwmdVLSGGEKQRIAMARLFYHKPQFAILDE 608
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-206 |
7.67e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 40.65 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 2 LHTKGLTKKYRTKVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTfimmnmtslkkVR----HHIGVLP 77
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT-----------VKwsenANIGYYA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 78 E--YTDLYEGLTAIEHIAYLSKITGTRQKT-SYYEELLefvglhrYHQE----KVGAFTPGMKKRLGMAQAIAHRPDFIL 150
Cdd:PRK15064 389 QdhAYDFENDLTLFDWMSQWRQEGDDEQAVrGTLGRLL-------FSQDdikkSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 639683928 151 LDEPFADIDADSilhiqrvIESL-----KFEGKTVFLTADEpRFTQPICTKTAFISEGKIV 206
Cdd:PRK15064 462 MDEPTNHMDMES-------IESLnmaleKYEGTLIFVSHDR-EFVSSLATRIIEITPDGVV 514
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
10-184 |
9.96e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 40.70 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 10 KYRTKV--AIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGTFIM--MNMTS--LKKVRHHIGVLPEYTDLY 83
Cdd:TIGR00957 1293 RYREDLdlVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIdgLNIAKigLHDLRFKITIIPQDPVLF 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 84 EGLTAIEHIAYlskitgtrqkTSYYEE----LLEFVGLHRY---------HQEKVGA--FTPGMKKRLGMAQAIAHRPDF 148
Cdd:TIGR00957 1373 SGSLRMNLDPF----------SQYSDEevwwALELAHLKTFvsalpdkldHECAEGGenLSVGQRQLVCLARALLRKTKI 1442
|
170 180 190
....*....|....*....|....*....|....*.
gi 639683928 149 ILLDEPFADIDADSILHIQRVIESlKFEGKTVFLTA 184
Cdd:TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRT-QFEDCTVLTIA 1477
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
14-159 |
2.15e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 39.55 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 14 KVAIDHIDLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSGtfimmnmtslkkvRHHIGVLPE--YTDLY-EGL---- 86
Cdd:PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-------------RIHCGTKLEvaYFDQHrAELdpek 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 87 TAIEHIAYLSK---ITG-TRQKTSYYEELLefvglhrYHQEK----VGAFTPGMKKRLGMAQAIAHRPDFILLDEPFADI 158
Cdd:PRK11147 399 TVMDNLAEGKQevmVNGrPRHVLGYLQDFL-------FHPKRamtpVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL 471
|
.
gi 639683928 159 D 159
Cdd:PRK11147 472 D 472
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1-182 |
4.69e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 38.46 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLH-TKGLTKKYRTKV-AIDHidLDIHQGDIFGLIGPKGAGKTTFFNIITGISRPTSG----TFIMMNMTSLKKVRHHIG 74
Cdd:PRK10938 3 SLQiSQGTFRLSDTKTlQLPS--LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerqsQFSHITRLSFEQLQKLVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 75 vlPEY----TDLYE------GLTAIEHIAYLSKitgtrqKTSYYEELLEFVGLHRYHQEKVGAFTPGMKKRLGMAQAIAH 144
Cdd:PRK10938 81 --DEWqrnnTDMLSpgeddtGRTTAEIIQDEVK------DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 639683928 145 RPDFILLDEPFADIDADSILHIQRVIESLKFEGKTVFL 182
Cdd:PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-170 |
6.08e-03 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 37.39 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 1 MLHTKGLTKKYRTKVAIDHIDLDIHQGDiFGLI-GPKGAGKTTFFNIITGISRPTSGTFIM--MNMTSLK--KVRHHIGV 75
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFegEDISTLKpeIYRQQVSY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639683928 76 LPEYTDLYeGLTAIEHIAYLSKITGTRQKTSYYEELLEFVGLHRYHQEK-VGAFTPGMKKRLGMAQAIAHRPDFILLDEP 154
Cdd:PRK10247 86 CAQTPTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKnIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164
|
170
....*....|....*.
gi 639683928 155 FADIDADSILHIQRVI 170
Cdd:PRK10247 165 TSALDESNKHNVNEII 180
|
|
| |
