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Conserved domains on  [gi|639714731|ref|WP_024724904|]
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EscU/YscU/HrcU family type III secretion system export apparatus switch protein [Flavonifractor plautii]

Protein Classification

EscU/YscU/HrcU family type III secretion system export apparatus switch protein( domain architecture ID 10006226)

EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to Bacillus subtilis uncharacterized protein YlqH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-94 1.67e-31

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 106.42  E-value: 1.67e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731   1 MSKsKQGGSGRAVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATILSQMELGREIPEELYQAIVDI 79
Cdd:COG2257    1 MSK-EKKKRKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                         90
                 ....*....|....*
gi 639714731  80 YIYFLQFDPSDPEKY 94
Cdd:COG2257   80 LAFIYRLDGKAPEGK 94
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-94 1.67e-31

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 106.42  E-value: 1.67e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731   1 MSKsKQGGSGRAVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATILSQMELGREIPEELYQAIVDI 79
Cdd:COG2257    1 MSK-EKKKRKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                         90
                 ....*....|....*
gi 639714731  80 YIYFLQFDPSDPEKY 94
Cdd:COG2257   80 LAFIYRLDGKAPEGK 94
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 12-82 5.19e-21

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 85.18  E-value: 5.19e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639714731   12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLA-TILSQMELGREIPEELYQAIVDIYIY 82
Cdd:pfam01312 265 AVALKYDPGKmPAPVVVAKGADELALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAY 337
flhB_rel TIGR00789
flhB C-terminus-related protein; This model describes a short protein (80-93 residues) ...
 11-87 1.24e-20

flhB C-terminus-related protein; This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set. [Unknown function, General]


Pssm-ID: 129871 [Multi-domain]  Cd Length: 82  Bit Score: 78.64  E-value: 1.24e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639714731   11 RAVALQYGPG-SGAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATILSQMELGREIPEELYQAIVDIYIYFLQFD 87
Cdd:TIGR00789   4 KAVALSYDTGkDKAPKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLLKLDLDDEIPEELYEVVAEIFAFLYTQD 81
flhB PRK05702
flagellar type III secretion system protein FlhB;
12-82 3.05e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 74.81  E-value: 3.05e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639714731  12 AVALQYGPGSG-APVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATIL-SQMELGREIPEELYQAIVDI--YIY 82
Cdd:PRK05702 274 AVALKYDRGKMaAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALyATVEIGQEIPEELYKAVAEVlaYVY 348
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-94 1.67e-31

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 106.42  E-value: 1.67e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731   1 MSKsKQGGSGRAVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATILSQMELGREIPEELYQAIVDI 79
Cdd:COG2257    1 MSK-EKKKRKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                         90
                 ....*....|....*
gi 639714731  80 YIYFLQFDPSDPEKY 94
Cdd:COG2257   80 LAFIYRLDGKAPEGK 94
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
12-82 2.72e-21

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 85.94  E-value: 2.72e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639714731  12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLA-TILSQMELGREIPEELYQAIVDIYIY 82
Cdd:COG1377  274 AVALKYDPGKmGAPVVVAKGADEVALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAY 346
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 12-82 5.19e-21

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 85.18  E-value: 5.19e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 639714731   12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLA-TILSQMELGREIPEELYQAIVDIYIY 82
Cdd:pfam01312 265 AVALKYDPGKmPAPVVVAKGADELALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAY 337
flhB_rel TIGR00789
flhB C-terminus-related protein; This model describes a short protein (80-93 residues) ...
 11-87 1.24e-20

flhB C-terminus-related protein; This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set. [Unknown function, General]


Pssm-ID: 129871 [Multi-domain]  Cd Length: 82  Bit Score: 78.64  E-value: 1.24e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 639714731   11 RAVALQYGPG-SGAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATILSQMELGREIPEELYQAIVDIYIYFLQFD 87
Cdd:TIGR00789   4 KAVALSYDTGkDKAPKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLLKLDLDDEIPEELYEVVAEIFAFLYTQD 81
flhB PRK05702
flagellar type III secretion system protein FlhB;
12-82 3.05e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 74.81  E-value: 3.05e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 639714731  12 AVALQYGPGSG-APVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATIL-SQMELGREIPEELYQAIVDI--YIY 82
Cdd:PRK05702 274 AVALKYDRGKMaAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALyATVEIGQEIPEELYKAVAEVlaYVY 348
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
12-79 8.10e-13

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 62.77  E-value: 8.10e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731  12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLAT-ILSQMELGREIPEELYQAIVDI 79
Cdd:PRK12772 530 AVALKYEEGKdEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARlIYKKVEIDQEIPQDMYQAVAEI 599
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 12-85 6.35e-11

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 57.50  E-value: 6.35e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 639714731  12 AVALQYGPG-SGAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATIL-SQMELGREIPEELYQAIVDIyIYFLQ 85
Cdd:PRK13109 276 AIALRYERSeNPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARSLyDAVQVDQVIPAEFYRPVAQI-LYFLF 350
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 12-79 8.71e-11

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 56.99  E-value: 8.71e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731  12 AVALQYGPG-SGAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLAT-ILSQMELGREIPEELYQAIVDI 79
Cdd:PRK12773 566 AVALEYKPGiHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARgLYEEVELGAEVPQQFYRAIATI 635
PRK06298 PRK06298
type III secretion system protein; Validated
 12-92 1.40e-08

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 50.62  E-value: 1.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731  12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATIL-SQMELGREIPEELYQAIVDIYIYFLQFDPS 89
Cdd:PRK06298 268 AVAIGYMPEKyKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLlDEGKELKFIPESTYEAIGEILLYITSLNAQ 347


                 ...
gi 639714731  90 DPE 92
Cdd:PRK06298 348 NPN 350
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 12-93 2.44e-08

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 50.03  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639714731  12 AVALQYGPGS-GAPVIVASGMGHLAERIVEVAVDSGVPVYEDNSLATIL-SQMELGREIPEELYQAIVDIYIYFLQFD-- 87
Cdd:PRK12468 274 AVALQYNESKmSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARALfRHSEVGQHIPATLYAAVAEVLAWVYQLKrw 353

                         90
                 ....*....|...
gi 639714731  88 -------PSDPEK 93
Cdd:PRK12468 354 kreggliPKKPEH 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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