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Conserved domains on  [gi|640463333|ref|WP_024908789|]
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MULTISPECIES: protein YbgS [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbgS super family cl16520
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 19-126 4.98e-17

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


The actual alignment was detected with superfamily member pfam13985:

Pssm-ID: 464062  Cd Length: 120  Bit Score: 71.11  E-value: 4.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640463333   19 SGSVLAAETGTSDSNGDANAAAAAGQPapdaKQNIAPNNVDNNQINTGNTNTGGTMLHPngsgsgTMNHDNMSSDEVHKN 98
Cdd:pfam13985  17 SGAALAADSNNGQANSAADAGQVAPDA----RQNVAPNNVDNSDINNGSTNTNSTMTHS------TMDSDGMTKDEVHKN 86

                          90       100       110
                  ....*....|....*....|....*....|....
gi 640463333   99 SMCKDGKCPDPNDKV------GNDANTKTDGTTQ 126
Cdd:pfam13985  87 TMCKDGRCPDVNKKVetgtgtGGDVNTKTDGTTQ 120
 
Name Accession Description Interval E-value
YbgS pfam13985
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 19-126 4.98e-17

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


Pssm-ID: 464062  Cd Length: 120  Bit Score: 71.11  E-value: 4.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640463333   19 SGSVLAAETGTSDSNGDANAAAAAGQPapdaKQNIAPNNVDNNQINTGNTNTGGTMLHPngsgsgTMNHDNMSSDEVHKN 98
Cdd:pfam13985  17 SGAALAADSNNGQANSAADAGQVAPDA----RQNVAPNNVDNSDINNGSTNTNSTMTHS------TMDSDGMTKDEVHKN 86

                          90       100       110
                  ....*....|....*....|....*....|....
gi 640463333   99 SMCKDGKCPDPNDKV------GNDANTKTDGTTQ 126
Cdd:pfam13985  87 TMCKDGRCPDVNKKVetgtgtGGDVNTKTDGTTQ 120
 
Name Accession Description Interval E-value
YbgS pfam13985
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 19-126 4.98e-17

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


Pssm-ID: 464062  Cd Length: 120  Bit Score: 71.11  E-value: 4.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640463333   19 SGSVLAAETGTSDSNGDANAAAAAGQPapdaKQNIAPNNVDNNQINTGNTNTGGTMLHPngsgsgTMNHDNMSSDEVHKN 98
Cdd:pfam13985  17 SGAALAADSNNGQANSAADAGQVAPDA----RQNVAPNNVDNSDINNGSTNTNSTMTHS------TMDSDGMTKDEVHKN 86

                          90       100       110
                  ....*....|....*....|....*....|....
gi 640463333   99 SMCKDGKCPDPNDKV------GNDANTKTDGTTQ 126
Cdd:pfam13985  87 TMCKDGRCPDVNKKVetgtgtGGDVNTKTDGTTQ 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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