NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|640506327|ref|WP_024942782|]
View 

MULTISPECIES: flagellin B [Aeromonas]

Protein Classification

flagellin( domain architecture ID 1001289)

flagellin polymerizes to form the filaments of bacterial flagella

CATH:  3.30.70.2120|1.20.1330.10
Gene Ontology:  GO:0009288|GO:0005576
PubMed:  34299141
SCOP:  4007637

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK08869 super family cl35743
polar flagellin E;
2-304 2.69e-109

polar flagellin E;


The actual alignment was detected with superfamily member PRK08869:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 321.88  E-value: 2.69e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   2 AMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  82 MDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISFRL 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTkSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 ---------------------------------------DKFAFTLSGIAGGTTGKATVVADTTTNDAFKVTKA------ 195
Cdd:PRK08869 161 ksmrsdakimggvsydaeggadkdwtvgagntdlnvsfdDKGGETQAITINAKAGDDIEELATYINGQTDGVGAsvsedg 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 196 ----------TTGNVSFT------------------DIKsITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRFDSTIR 247
Cdd:PRK08869 241 klqlfaagqkVSGGVSFSgglaaelglgnatavtvdDLD-ISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAIN 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 248 NQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLLG 304
Cdd:PRK08869 320 NLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-304 2.69e-109

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 321.88  E-value: 2.69e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   2 AMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  82 MDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISFRL 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTkSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 ---------------------------------------DKFAFTLSGIAGGTTGKATVVADTTTNDAFKVTKA------ 195
Cdd:PRK08869 161 ksmrsdakimggvsydaeggadkdwtvgagntdlnvsfdDKGGETQAITINAKAGDDIEELATYINGQTDGVGAsvsedg 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 196 ----------TTGNVSFT------------------DIKsITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRFDSTIR 247
Cdd:PRK08869 241 klqlfaagqkVSGGVSFSgglaaelglgnatavtvdDLD-ISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAIN 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 248 NQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLLG 304
Cdd:PRK08869 320 NLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-303 2.60e-65

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 206.61  E-value: 2.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:NF038071   1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG----TFQVGADAGQTI 156
Cdd:NF038071  81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFeaavTFQIGGSSAEKL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 157 SFrldKFAFTLSGIAGGTTGKATVVADTTTNDafkvtkattgnvsftdiksitsALNAQKSMANLDYMIKAVDSKRAELG 236
Cdd:NF038071 161 DV---DASANVQKVNAEVVGTEKDVTAGIGTQ----------------------AKAASAAITKLDTLLGDIGAVRSQFG 215

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 237 AIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:NF038071 216 ANINRLEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-304 2.29e-60

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 192.39  E-value: 2.29e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGkykgtfqvgadagqtisfrldk 162
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAG---------------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 faftlsgiaggttgkatvvaDTTTNDAFKVTKATTGNVSFTDIKSITSALNaqksmanldymikAVDSKRAELGAIQNRF 242
Cdd:COG1344  139 --------------------TATDTPPFQVDYQGDAGQRTAALGALDAALD-------------NVSSARAELGARQNRL 185

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640506327 243 DSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQrpQSALSLLG 304
Cdd:COG1344  186 ESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ--LSLLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-140 2.85e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 121.68  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327    5 INTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 640506327   85 ITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDG 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAG 136
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-294 9.11e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 95.49  E-value: 9.11e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327    5 INTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAMDE 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   85 ITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGkYKGTFQ-VGADAGQTISFRLDKF 163
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSG-TKTDTPpFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  164 AFTLSGIAGGT--TGKATVVADTTTNDAFKVTKATTGNVsFTDIKSITSALNA-------QKSMANLDYMIKAVDSKRAE 234
Cdd:TIGR02550 161 QRKVQVASNRSmpIGHPGDKVFMSIPNNDKSVFSTGDDL-IDALKKLEDALSSgdakaalSASLNDLDKALDNVLSARAE 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  235 LGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQ 294
Cdd:TIGR02550 240 VGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-304 2.69e-109

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 321.88  E-value: 2.69e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   2 AMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  82 MDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISFRL 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTkSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 ---------------------------------------DKFAFTLSGIAGGTTGKATVVADTTTNDAFKVTKA------ 195
Cdd:PRK08869 161 ksmrsdakimggvsydaeggadkdwtvgagntdlnvsfdDKGGETQAITINAKAGDDIEELATYINGQTDGVGAsvsedg 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 196 ----------TTGNVSFT------------------DIKsITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRFDSTIR 247
Cdd:PRK08869 241 klqlfaagqkVSGGVSFSgglaaelglgnatavtvdDLD-ISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAIN 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 248 NQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLLG 304
Cdd:PRK08869 320 NLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
1-303 3.54e-84

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 257.78  E-value: 3.54e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK06819   1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGTFQVGADAGQTISFRL 160
Cdd:PRK06819  81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDTTMSIQVGANDGETIDINL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 DKF--------AFTLSGIAG--------------------------GTTGKATVVADTTTNDAFKVTKATTGN---VSFT 203
Cdd:PRK06819 161 QKIdskslglgSFSVSGVSGaltsltftdtaldtsvtgvttttaldFSDISTFAKGATVHGIGDVGTDGAYADgyvIRTT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 204 DIKSITSALNAQKS-----------------------------------MANLDYMIKAVDSKRAELGAIQNRFDSTIRN 248
Cdd:PRK06819 241 DGKQYKGEVDATNGkvtfaddangdpitdatkleaaaqfspagkataspLETLDDALKQVDGLRSSLGAVQNRFESTVTN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 640506327 249 QSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK06819 321 LNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
PRK12802 PRK12802
flagellin; Provisional
 1-304 1.29e-76

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 235.54  E-value: 1.29e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK12802   1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISfr 159
Cdd:PRK12802  81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTmTFQVGANTGQSNQ-- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 160 ldkfaftlsgiaggttgkatvvADTTTNDAFKVTKATTGNVS-FTDIKSITSALNAQKSMANLDYMIKAVDSKRAELGAI 238
Cdd:PRK12802 159 ----------------------ITFGLSASFDATGLGVGSGTlITGADSAAAETNAQAAITAIDAALQTINTTRADLGAA 216

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640506327 239 QNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLLG 304
Cdd:PRK12802 217 QNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-303 2.60e-65

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 206.61  E-value: 2.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:NF038071   1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG----TFQVGADAGQTI 156
Cdd:NF038071  81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFeaavTFQIGGSSAEKL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 157 SFrldKFAFTLSGIAGGTTGKATVVADTTTNDafkvtkattgnvsftdiksitsALNAQKSMANLDYMIKAVDSKRAELG 236
Cdd:NF038071 161 DV---DASANVQKVNAEVVGTEKDVTAGIGTQ----------------------AKAASAAITKLDTLLGDIGAVRSQFG 215

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 237 AIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:NF038071 216 ANINRLEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
PRK12804 PRK12804
flagellin; Provisional
 3-303 2.14e-60

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 194.45  E-value: 2.14e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK12804   1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANS-SNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG----------TFQVGAD 151
Cdd:PRK12804  81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPaapaagtkslTFQIGAN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 152 AGQTISFRLDKFAFTLSGIAGGttgKATVVADTTTNDaFKVTK----ATTGNVSFTDiksitsalnaqkSMANLDYMIKA 227
Cdd:PRK12804 161 AAQQLSVNIEAMSADALGVKDT---DGTLVTGKSVSD-IDVTKfanaAAAADGGFDD------------QLKIVDGAIKQ 224

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640506327 228 VDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK12804 225 VSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLL 300
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-304 2.29e-60

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 192.39  E-value: 2.29e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGkykgtfqvgadagqtisfrldk 162
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAG---------------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 faftlsgiaggttgkatvvaDTTTNDAFKVTKATTGNVSFTDIKSITSALNaqksmanldymikAVDSKRAELGAIQNRF 242
Cdd:COG1344  139 --------------------TATDTPPFQVDYQGDAGQRTAALGALDAALD-------------NVSSARAELGARQNRL 185

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640506327 243 DSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQrpQSALSLLG 304
Cdd:COG1344  186 ESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ--LSLLDLLR 245
PRK12806 PRK12806
flagellin; Provisional
 1-304 1.99e-58

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 194.52  E-value: 1.99e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK12806   1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISFR 159
Cdd:PRK12806  81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGaSFQVGANSNQTINFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 160 L------------------------------------------------------------------------------- 160
Cdd:PRK12806 161 Igsikassiggiatatgtevagaaatditiaigggaatsinssanftgalngqdatsayakaaaindagigglsvtasts 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 -------------DKFAFTLSGIA-------------------------------------------------------- 171
Cdd:PRK12806 241 gtqavgaiggtagDTYNLTINGVAiytnldvataltnsdlrdaingvsnqtgvvaslnggnmtltaadgrnitvtesgtg 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 172 ----------------GGTTGKATVVADTTTNDAFKVTKAT-----TGNVSFTDIKSITSALNAQKSMANLDYMIKAVDS 230
Cdd:PRK12806 321 ftagtdgltvtggafdGALRGTLSISAVDTIAIGGTVANIGlsaniSKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNS 400

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640506327 231 KRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLLG 304
Cdd:PRK12806 401 NRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK08026 PRK08026
FliC/FljB family flagellin;
1-303 9.08e-48

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 167.23  E-value: 9.08e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK08026   1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGTFQVGADAGQTI---- 156
Cdd:PRK08026  81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGETItidl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327     --------------------------------------------------------------------------------
Cdd:PRK08026 161 kkidsdtlgldgfnvngkgtvantaatvsdltaagatldttglydvktknaalttadalaklgdgdkvtatatggdytyn 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 157 ----SFRLDKFAFTLSGIAGGTT------------------------GKATVVADT---TTNDAFKVTKATTGNV----- 200
Cdd:PRK08026 241 aksgKYQAADLAATLTPDVGGTAgasytikdgtyevnvdsdgkitlgGSALYIDATgnlTTNNAGAATKATLDALkktas 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 201 ----------------------------SFTDIKSITSALNAQKSMAN-------------------------------- 220
Cdd:PRK08026 321 egaatakaalaaagvtvadgvtaktvkmSYTDKNGKVIDGGYAVKTGDdyyaadydeitgaisatttyytakdgttktaa 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 221 --------------------------------------------LDYMIKAVDSKRAELGAIQNRFDSTIRNQSNVSENL 256
Cdd:PRK08026 401 nklggadgktevvtidgktyvasdgkqttlaeaaatttenplaaLDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNL 480

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 640506327 257 SAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK08026 481 SEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 527
PRK12807 PRK12807
flagellin; Provisional
 3-303 8.97e-46

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 156.52  E-value: 8.97e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGTFQVGADAGQTISfrldk 162
Cdd:PRK12807  81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEIS----- 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 faftlsgIAGGTTGKATVVADTTTNdafKVTKATTGNVSFTDIKSITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRF 242
Cdd:PRK12807 156 -------IETLDSSATNQQITIKLA---NTTAEKLGIDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRL 225

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640506327 243 DSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK12807 226 DRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 286
PRK12803 PRK12803
flagellin; Provisional
 3-303 3.98e-39

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 140.33  E-value: 3.98e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK12803   1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG------------------ 144
Cdd:PRK12803  81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAqnvrtaeelgmqpakint 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 145 -----------TFQVGADAGQTISFRLDKFAFTLSGI-AGGTTGKATVVADTTTNDAFKVTKATTGNVSFTDIKS---IT 209
Cdd:PRK12803 161 paslsgsqaswTLRVHVGANQDEAIAVNIYAANVANLfSGEGAQQAAPVQEGAQQEGAQAAPAPAAAPAQGGVNSpvnVT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 210 SALNAQKSMANLDYMIKAVDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSIL 289
Cdd:PRK12803 241 TTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMI 320

                        330
                 ....*....|....
gi 640506327 290 AQANQRPQSALSLL 303
Cdd:PRK12803 321 AQANQVPQYVLSLL 334
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-140 2.85e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 121.68  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327    5 INTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 640506327   85 ITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDG 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAG 136
PRK12805 PRK12805
FliC/FljB family flagellin;
3-303 1.73e-32

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 121.52  E-value: 1.73e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK12805   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKG-TFQVGADAGQTISFRLD 161
Cdd:PRK12805  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGaATQVSIQASDKANDLIN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 162 KFAFTLSGIAGGTtgkatvvadtttndafkVTKATTGNVSFTDIKSITSALNAQKSMANLDYMIKAVDSKRAELGAIQNR 241
Cdd:PRK12805 161 IDLFNAKGLSAGT-----------------ITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSR 223

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640506327 242 FDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK12805 224 LSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
PRK13588 PRK13588
flagellin B; Provisional
 1-156 2.09e-29

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 116.89  E-value: 2.09e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK13588   1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGT-FQVGADAGQTI 156
Cdd:PRK13588  81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKeFQIGAYSNTTV 157
PRK08411 PRK08411
flagellin; Reviewed
 1-156 5.40e-29

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 116.24  E-value: 5.40e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK08411   1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGT-FQVGADAGQTI 156
Cdd:PRK08411  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQeFQIGASSNQTV 157
PRK12584 PRK12584
flagellin A; Reviewed
 1-156 1.34e-27

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 111.92  E-value: 1.34e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK12584   1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGT-FQVGADAGQTI 156
Cdd:PRK12584  81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKeFQVGAYSNQSI 157
PRK13589 PRK13589
flagellin A;
1-156 1.80e-26

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 108.96  E-value: 1.80e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   1 MAMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEG 80
Cdd:PRK13589   1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327  81 AMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGT-FQVGADAGQTI 156
Cdd:PRK13589  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQeFQIGASSNQTI 157
PRK12808 PRK12808
flagellin; Provisional
 3-273 5.31e-25

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 104.27  E-value: 5.31e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK12808   1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGKYKGTFQV--GADAGQTISFRL 160
Cdd:PRK12808  81 NSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSINIQTldSSDGDKQIGIDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 161 ---------------------DKFAFTLSGIAGGTTGKATVVADTTTNDAFKVTKATTGNV--SFTDIKSITSALNAQKS 217
Cdd:PRK12808 161 ksatlealgindlsigantdiEAVSTKIAALDKNTIAKATVEAKAAFDKAKDDTKAEDSNIldAAADGFKDGKADDAAKD 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640506327 218 MANLDYMIKA--VDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIR---DADFATETA 273
Cdd:PRK12808 241 VEAIKTALSAftGAATLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVadlDTAKTTSTR 301
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-294 9.11e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 95.49  E-value: 9.11e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327    5 INTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAMDE 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   85 ITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLDGkYKGTFQ-VGADAGQTISFRLDKF 163
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSG-TKTDTPpFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  164 AFTLSGIAGGT--TGKATVVADTTTNDAFKVTKATTGNVsFTDIKSITSALNA-------QKSMANLDYMIKAVDSKRAE 234
Cdd:TIGR02550 161 QRKVQVASNRSmpIGHPGDKVFMSIPNNDKSVFSTGDDL-IDALKKLEDALSSgdakaalSASLNDLDKALDNVLSARAE 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  235 LGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQ 294
Cdd:TIGR02550 240 VGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 218-303 9.05e-20

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 81.99  E-value: 9.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  218 MANLDYMIKAVDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQ 297
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 640506327  298 SALSLL 303
Cdd:pfam00700  81 SLLNLL 86
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 3-291 2.60e-19

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 85.82  E-value: 2.60e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISkDTTFGGQNLLDGkYKGTFQVGADAGQTISFRLDK 162
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIA-NTQYNGRYIFNG-TKTDTPPVTDDGDNIENSTDS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 fAFTLSGIAGGTTGKATVvadtTTNDAFKVTKATTGNVsFTDIKSITSAL------NAQKSMANLDYMIKAVDSKRAELG 236
Cdd:PRK07701 159 -GDIEFEIAKGNTINVNV----PGDKAFGGQSGGGSNL-FEMLDNLENALdsgdtqGVSNLLSDIDQHIDNVLAVRAELG 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 640506327 237 AIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQ 291
Cdd:PRK07701 233 ARSNRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGAR 287
PRK06663 PRK06663
flagellar hook-associated protein 3;
3-128 1.65e-14

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 73.18  E-value: 1.65e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISK 128
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIAN 127
PRK08411 PRK08411
flagellin; Reviewed
 164-303 7.12e-14

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 71.94  E-value: 7.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 164 AFTLSGIAGGTTGKATVVADTTTNDAFKVTKATTGnvsftdiksITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRFD 243
Cdd:PRK08411 441 VYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAG---------VTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVT 511

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 244 STIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK08411 512 STINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLL 571
PRK12687 PRK12687
flagellin; Reviewed
 7-303 2.91e-12

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 65.84  E-value: 2.91e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   7 TNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAMDE-I 85
Cdd:PRK12687   6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTSvV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  86 TNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISKDTTFGGQNLLD-----GKYKGTFQV--------GADA 152
Cdd:PRK12687  86 GDSKSGLTALKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSvdsspSSYNATKSVvssftrvgGTVA 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 153 GQTISFRLDKFAFTLSGiaGGTTgkatvvadTTTNDAFKVTKATTGNVSFTDIKSITSALNAQKSM----ANLDYMIKAV 228
Cdd:PRK12687 166 IKTIDVNIAKLALYDTN--GSST--------TGILDKTVTVGTATASVSSIDIHLLTDSATDLTKLdgyiGIVDQALGSV 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640506327 229 DSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK12687 236 TQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLF 310
PRK13589 PRK13589
flagellin A;
164-303 1.32e-11

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 65.05  E-value: 1.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 164 AFTLSGIAGGTTGKATVVADTTTNDAFKVTKATTGnvsftdiksITSALNAQKSMANLDYMIKAVDSKRAELGAIQNRFD 243
Cdd:PRK13589 445 VYNVSAGSGFSSGSGLSQFATMKTTAAGVKDETAG---------VTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQ 515

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 244 STIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 303
Cdd:PRK13589 516 VTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLL 575
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 3-291 5.54e-09

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 56.46  E-value: 5.54e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRI--SKDTT----FGG--------QNLLDGKY------ 142
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLanSKDGSgnylFAGtqsgtqpfAFDASGNVvysgdq 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 143 -----------------------------KGTFQVGADAGQTISFRL--------------DKFAFTLSGIAGGTTGkaT 179
Cdd:PRK08870 161 gqrqvqvadsvqvatndpgdevfmsvpngGGDYVPNANASNTGTGLLgsasitdpsdpvngDTYTITFTDNGAGGTN--T 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 180 VVADTTTN------------------------------DAFKVTKATTGNVsFTDIKSITSALNA--------------- 214
Cdd:PRK08870 239 YVTDSSTGtvvtaqaydagqpinfngvevqisgapaagDSFTLTPAPQASI-FDTLDDAIAALESpvstpaadaalqnal 317

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 215 QKSMANLDYMIKAVDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQ 291
Cdd:PRK08870 318 AQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSK 394
flgL PRK12717
flagellar hook-associated protein 3;
3-123 2.43e-08

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 54.75  E-value: 2.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINT----NTSSLNAQRNLMNTNKSLDtsytRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTA 78
Cdd:PRK12717   1 MRISTsqfyESSAANYQRNYSNLVKTQE----QASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQE 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 640506327  79 EGAMDEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEI 123
Cdd:PRK12717  77 ESTLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121
flgL PRK08073
flagellar hook-associated protein 3;
3-285 2.67e-07

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 51.14  E-value: 2.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK08073   1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDdrvalqaEYKQLNTEINRISKDTTFggqnLLDGKYKGTFQVGADAGQTISFRLDK 162
Cdd:PRK08073  81 SGMSKSLTRVDQLVLQALNGTNDEK-------ELKAIGAEIDQILKQVVY----LANTKEQGRYVFGGDSAEKKPFTEDG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 faftlsGIAGGTTGKATVVADTTTNDAFKVTKATTGNVsFTDIKSITSALNA--QKSMANL----DYMIKAVDSKRAELG 236
Cdd:PRK08073 150 ------TYQGGTEDVNWRLNDGYEVKAFRNGEALLTPV-INTLKKMVDAMQTgdQKALQPLleenKKNLDIIINRTTEVG 222

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 640506327 237 AIQNRFDS--TIRNQSNVSenLSAARSRIRDADFATETANLTKQNILQQAA 285
Cdd:PRK08073 223 GTMNTVETfkTILSEQNLA--LQENRKEIEDVDLAVAISDLAYINATYEAT 271
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 3-294 1.65e-06

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 48.86  E-value: 1.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYkqlnteinRISKDTTFGGQNLLDGkyKGTFQVGADAGQTISFRLDK 162
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATEL--------RSMLDSLLGLANAKDS--EGNYLFSGTASNTQPITFDA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327 163 FAFTLSgIAGGTTGKATVVADTTT---------------NDAFKVTKATTGNVSFTDIKSITSALNAQ--KSMANLDYMI 225
Cdd:PRK07192 151 AGGTYT-YNGNSDQRQVQVGEGVQmpvnvtgqsvfqgggLDVFNTLDKLIDLLETPALPAADAALTAAvdEALGAIDDAL 229

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640506327 226 KAVDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQ 294
Cdd:PRK07192 230 DNVLTVRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINS 298
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
3-140 1.67e-05

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 46.11  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISkDTTFGGQNLLDG 140
Cdd:PRK14692  81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLA-NTSVNGQYLFAG 137
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 3-140 2.62e-05

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 45.58  E-value: 2.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640506327   3 MYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQVNGLDQGNRNANDGISVAQTAEGAM 82
Cdd:PRK08412   1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 640506327  83 DEITNMLQRMRTLSQQSANSSNNSDDRVALQAEYKQLNTEINRISkDTTFGGQNLLDG 140
Cdd:PRK08412  81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLA-NTSIGGEFLFSG 137
flgL PRK12717
flagellar hook-associated protein 3;
218-294 3.25e-03

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 38.95  E-value: 3.25e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640506327 218 MANLDYMIKAVDSKRAELGAIQNRFDSTIRNQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQ 294
Cdd:PRK12717 440 LGNLASAIDQVDTARSSIGARGNALDIQGTTNESLSLANTTTQSSIRDSDPAEATTRLTLQQTMLEASQLAFVKISQ 516
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH