|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-460 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 717.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 6 WQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTEHLGNDaPKLRFDIGSRPSA 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 85 -KPQVQTPTATKASVSAPKSAagkgatfntaaepavnhsyRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPL 163
Cdd:TIGR00362 80 lEPNSKKPEPAPPEAPAPPSS-------------------ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 164 FLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQE 243
Cdd:TIGR00362 141 FIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQE 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 244 EFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKR 323
Cdd:TIGR00362 221 EFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKN 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 324 LRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQ 403
Cdd:TIGR00362 301 ITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQ 380
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 640581526 404 MAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTL 460
Cdd:TIGR00362 381 IAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-462 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 709.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 1 MAVSLWQQCIGRLQDELSAQQFSMWIRPLQ-AEMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTehlgndapklrfdig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 80 srpsakpqvqtptatkasvsapksaagkgatfntaaepavnhsyrsnINPTYQFDNFVEGKSNQLGKAAALQVAENPGGA 159
Cdd:PRK00149 66 -----------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKA 98
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 160 YNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKD 239
Cdd:PRK00149 99 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 240 RSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFF 319
Cdd:PRK00149 179 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 320 IAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVA 399
Cdd:PRK00149 259 IAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIA 338
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640581526 400 RPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLSS 462
Cdd:PRK00149 339 RPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
127-429 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 548.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 127 INPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMV 206
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 207 KALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLT 286
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 287 VAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQE 366
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640581526 367 KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDH 429
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
127-345 |
7.26e-127 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 367.04 E-value: 7.26e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 127 INPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMV 206
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 207 KALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLT 286
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 287 VAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 345
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
371-460 |
1.43e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.65 E-value: 1.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 371 IDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIK 450
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 640581526 451 EDYANLIRTL 460
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
370-438 |
2.13e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 128.39 E-value: 2.13e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 370 TIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRK 438
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-460 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 717.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 6 WQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTEHLGNDaPKLRFDIGSRPSA 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 85 -KPQVQTPTATKASVSAPKSAagkgatfntaaepavnhsyRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPL 163
Cdd:TIGR00362 80 lEPNSKKPEPAPPEAPAPPSS-------------------ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 164 FLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQE 243
Cdd:TIGR00362 141 FIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQE 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 244 EFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKR 323
Cdd:TIGR00362 221 EFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKN 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 324 LRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQ 403
Cdd:TIGR00362 301 ITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQ 380
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 640581526 404 MAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTL 460
Cdd:TIGR00362 381 IAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-462 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 709.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 1 MAVSLWQQCIGRLQDELSAQQFSMWIRPLQ-AEMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTehlgndapklrfdig 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 80 srpsakpqvqtptatkasvsapksaagkgatfntaaepavnhsyrsnINPTYQFDNFVEGKSNQLGKAAALQVAENPGGA 159
Cdd:PRK00149 66 -----------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKA 98
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 160 YNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKD 239
Cdd:PRK00149 99 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 240 RSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFF 319
Cdd:PRK00149 179 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 320 IAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVA 399
Cdd:PRK00149 259 IAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIA 338
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640581526 400 RPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLSS 462
Cdd:PRK00149 339 RPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
127-429 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 548.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 127 INPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMV 206
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 207 KALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLT 286
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 287 VAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQE 366
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640581526 367 KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDH 429
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
127-345 |
7.26e-127 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 367.04 E-value: 7.26e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 127 INPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMV 206
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 207 KALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLT 286
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 287 VAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 345
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
86-449 |
1.68e-121 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 367.61 E-value: 1.68e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 86 PQVQTPTATKASVSAPKSAAGKGATFNTAAEPAvnhsyrSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFL 165
Cdd:PRK14086 246 PERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPT------ARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFI 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 166 YGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKDRSQEEF 245
Cdd:PRK14086 320 YGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEF 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 246 FHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLR 325
Cdd:PRK14086 400 FHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 326 SNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQM 404
Cdd:PRK14086 480 RNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQI 559
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 640581526 405 AMALSKELTNQSLPEIGDAFgGRDHTTVLHACRKIAQLREESHDI 449
Cdd:PRK14086 560 AMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
6-462 |
1.34e-76 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 246.29 E-value: 1.34e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 6 WQQCIGRLQDELSAQQFSMWIRPLQ-AEMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFtehLGNDAPKLRFDIGSRPSA 84
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKvLCFDACNLYLEAKDSFQVTWFEEHIRHKVKASL---VNNNGKPIRVHVTSLDKS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 85 KPQVQTPTATKAsvsapksaagKGATFNTAAEpavnhsyrsNINPTYQFDNFVEGKSNQLGKAAALQVA----ENPGGAY 160
Cdd:PRK12422 81 TPFKKEKQIQQE----------KTAYFTMKYG---------ELDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 161 NPLFLYGGTGLGKTHLLHAVGNGIikNNPNAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIQFFANKDR 240
Cdd:PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 241 SQEEFFHTFNAL-LEGNhQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFF 319
Cdd:PRK12422 220 TQEEFFHTFNSLhTEGK-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDF 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 320 IAKRLRSNVRELEGALNRV---IANANFTGRPITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKMADMLSKRRS 395
Cdd:PRK12422 299 LIEALSSNVKSLLHALTLLakrVAYKKLSHQLLYVDDIKALLHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILGRSQS 378
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640581526 396 RSVARPRQMAMALSKELTNQSLPEIGDAFgGRDHTTVLHACRKIAQ-LREESHDIKEDYANLIRTLSS 462
Cdd:PRK12422 379 REYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
371-460 |
1.43e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.65 E-value: 1.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 371 IDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIK 450
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 640581526 451 EDYANLIRTL 460
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
371-439 |
8.14e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 134.84 E-value: 8.14e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 371 IDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKI 439
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
370-438 |
2.13e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 128.39 E-value: 2.13e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 370 TIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRK 438
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
133-359 |
2.39e-35 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 130.77 E-value: 2.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 133 FDNFVEGkSNQLGKAAALQVAENPGGayNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAkvVYMHSERFVQDMVKALqnN 212
Cdd:TIGR03420 14 FDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL--E 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 213 AIEDFkryyrsvDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPP 292
Cdd:TIGR03420 87 GLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640581526 293 ELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 359
Cdd:TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
4-65 |
2.30e-20 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 84.64 E-value: 2.30e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640581526 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEM--DGDTLVIYAPNRFVLDWVRDKYLNIINQFFTE 65
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDldDGGSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
133-359 |
4.02e-20 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 88.97 E-value: 4.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 133 FDNFVEGKSNQLgkAAALQ-VAENPGGAYnpLFLYGGTGLGKTHLLHAVGNGIikNNPNAKVVYMHSER---FVQDMVKA 208
Cdd:PRK08084 21 FASFYPGDNDSL--LAALQnALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKrawFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 209 LQnnaiedfkryyrSVDALFIDDIQFFANKDRSQEEFFHTFNALLE-GNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTV 287
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640581526 288 AIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 359
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
142-285 |
6.54e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 83.35 E-value: 6.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 142 NQLGKAAALQVAENPggAYNPLFLYGGTGLGKTHLLHAVGNGIIKnnPNAKVVYMHSERFVQDMVKALQ----NNAIEDF 217
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELfghfLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640581526 218 KRYYRSVDALFIDDIQFFANKDRSQ-EEFFHTFNALLE--GNHQIILTSDR--YPKEIDGVEDRLKSRFGWGL 285
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
129-358 |
6.36e-18 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 82.33 E-value: 6.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 129 PTyqFDNFVEGKSNQLGKAAALQVAENPGGAYnpLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSerfvqdmvka 208
Cdd:PRK08903 15 PT--FDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 209 lqnnAIEDFKrYYRSVDALFIDDIQFFANKDrsQEEFFHTFNALLEGNHQIILTS-DRYPKEIDGVEDrLKSRFGWGLTV 287
Cdd:PRK08903 81 ----PLLAFD-FDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAgPAAPLALPLRED-LRTRLGWGLVY 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640581526 288 AIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREAL 358
Cdd:PRK08903 153 ELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREML 223
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
378-445 |
2.39e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 57.86 E-value: 2.39e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640581526 378 VAEYYKIKMADMLS-KRRSRSVARPRQMAMALSKELTNQSLPEIGDAFGgRDHTTVLHACRKIAQLREE 445
Cdd:PRK06030 32 LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
163-263 |
4.76e-10 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 59.79 E-value: 4.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 163 LFLYGGTGLGKTHLLHAVGNGIIKNNPnaKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALFIDDIqFFANKDRSQ 242
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRAGY--RVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDEL-GYLPLDAEG 178
|
90 100
....*....|....*....|..
gi 640581526 243 -EEFFHTFNALLEgNHQIILTS 263
Cdd:COG1484 179 aELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
161-280 |
1.90e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.45 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 161 NPLFLYGGTGLGKTHLLHAVGNGIIKnnPNAKVVYMHSERFVQDMVKALQNNAIEDFKRY---------------YRSVD 225
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 226 ALFIDDIQFFANKDRSQEEFFHTFNALL-----EGNHQIILTSDRYPKEIDGVEDRLKSR 280
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
4-84 |
3.17e-07 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 52.07 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTEHLGNDApKLRFDIGSRPS 83
Cdd:PRK06672 193 TIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGNTY-EIQFELKSNTT 271
|
.
gi 640581526 84 A 84
Cdd:PRK06672 272 S 272
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
163-281 |
1.20e-06 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 50.28 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 163 LFLYGGTGLGKTHLLHAVGNGIIKnnpNAK-VVYMHSERFVQDMVKALQNNAIEDFKRY--YRSVDALFIDDIQFFANKD 239
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLD---RGKsVIYRTADELIEILREIRFNNDKELEEVYdlLINCDLLIIDDLGTEKITE 262
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 640581526 240 RSQEEFFHTFNA-LLEGNHQIILT-------SDRYPKEIdgvEDRLKSRF 281
Cdd:PRK06835 263 FSKSELFNLINKrLLRQKKMIISTnlsleelLKTYSERI---SSRLLGNF 309
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
163-232 |
2.07e-05 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 46.40 E-value: 2.07e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 163 LFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSerFVQDMVKALQNNAIEDFKRYYRSVDALFIDDI 232
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
3-89 |
1.23e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 43.98 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 3 VSLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLVIYAPNRFVLDWVRDKYLNIINQfFTEHLGNDAPKLRFDIGSRP 82
Cdd:PRK06672 92 LSSWDEVKKALRPKIAEKTFMTWIRNTNATIKDNKVIIFCEDAFHRDLLEGEYKNIISS-TVQKITDEEYQIWFEIGSSA 170
|
....*..
gi 640581526 83 SAKPQVQ 89
Cdd:PRK06672 171 TSKAQVH 177
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
125-289 |
1.60e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 43.23 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 125 SNINPTYQ---FDNFV-EGKSnQLGKAA---ALQVAEN----PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKV 193
Cdd:PRK06921 72 SEITEAFRkltFKNFKtEGKP-QAIKDAyecAVEYVKDfekiQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 194 VYMHSERFvqDMVKALQNNAIEDFKRyYRSVDALFIDDIQFFANKDRSQEEF-FHTFNALLEG---NHQ-IILTSDRYPK 268
Cdd:PRK06921 151 YFPFVEGF--GDLKDDFDLLEAKLNR-MKKVEVLFIDDLFKPVNGKPRATEWqIEQMYSVLNYrylNHKpILISSELTID 227
|
170 180
....*....|....*....|....
gi 640581526 269 EIDGVEDRLKSRF---GWGLTVAI 289
Cdd:PRK06921 228 ELLDIDEALGSRIvemCKDYLVII 251
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
124-232 |
3.49e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 42.06 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 124 RSNINPTYQ---FDNF-VEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYmhse 199
Cdd:PRK07952 59 RSGIRPLHQncsFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT---- 134
|
90 100 110
....*....|....*....|....*....|....*....
gi 640581526 200 rfVQDMVKALQ------NNAIEDFKRYYRSVDALFIDDI 232
Cdd:PRK07952 135 --VADIMSAMKdtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
121-358 |
3.77e-04 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 41.75 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 121 HSYRSNINPTYQFDNFVEGKSNqlgkAAALQVAENPGGAY--NP----LFLYGGTGLGKTHLLHavgngIIKNNPNAkvv 194
Cdd:PRK06620 3 YIFRFTTSSKYHPDEFIVSSSN----DQAYNIIKNWQCGFgvNPykftLLIKGPSSSGKTYLTK-----IWQNLSNA--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 195 YMHSERFVQDmvkalqnnaiedfkRYYRSVDALFIDDIQFFANKdrsqeEFFHTFNALLEGNHQIILTSDRYPKEIdgVE 274
Cdd:PRK06620 71 YIIKDIFFNE--------------EILEKYNAFIIEDIENWQEP-----ALLHIFNIINEKQKYLLLTSSDKSRNF--TL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 275 DRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFV 354
Cdd:PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209
|
....
gi 640581526 355 REAL 358
Cdd:PRK06620 210 KEVL 213
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
128-369 |
6.76e-04 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 41.76 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 128 NPTYQFDNFV--EGKSNQLgkAAALQVAENpGGAYNPLFLYGGTGLGKTHLLHAVGNGI----IKNNPNAKVVY-----M 196
Cdd:COG1474 20 SPDYVPDRLPhrEEEIEEL--ASALRPALR-GERPSNVLIYGPTGTGKTAVAKYVLEELeeeaEERGVDVRVVYvncrqA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 197 HSE-RFVQDMVKALQNN---------AIEDFKRYYRSVDALF------IDDIQFFANKDRSQE-EFFHTFNALLEGNH-Q 258
Cdd:COG1474 97 STRyRVLSRILEELGSGedipstglsTDELFDRLYEALDERDgvlvvvLDEIDYLVDDEGDDLlYQLLRANEELEGARvG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 259 IILTSdRYPKEIDGVEDRLKSRFGwGLTVAIEP---PELetrVAILMRKAQEsGIN---LPDEVAFFIAK---RLRSNVR 329
Cdd:COG1474 177 VIGIS-NDLEFLENLDPRVKSSLG-EEEIVFPPydaDEL---RDILEDRAEL-AFYdgvLSDEVIPLIAAlaaQEHGDAR 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 640581526 330 ElegALN--RV---IANANftGRP-ITIDFVREALRDL-----------LALQEKLV 369
Cdd:COG1474 251 K---AIDllRVageIAERE--GSDrVTEEHVREAREKIerdrllevlrgLPTHEKLV 302
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
6-89 |
8.47e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 41.29 E-value: 8.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 6 WQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLVIYAPNRFVLDWVRDKYLNIINQFFTEhLGNDAPKLRFDI-GSRPSA 84
Cdd:PRK06672 5 WTEVKEKIRPQISKPSYETWFTNTTVYLEDDILTIYCPNEFARDWLESHYKELVFNTLRE-MFNTTFEIQFDLcNGEPSN 83
|
....*
gi 640581526 85 KPQVQ 89
Cdd:PRK06672 84 LKDVQ 88
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
131-232 |
2.06e-03 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 40.00 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 131 YQFDNF-VEGKSNQLGKAAALQV-------AENPGgaynpLFLYGGTGLGKTHLLHAVGNGIIKNnpNAKVVYMHSERFV 202
Cdd:PRK08116 82 STFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLL 154
|
90 100 110
....*....|....*....|....*....|...
gi 640581526 203 QDMVKALQNNAIEDFKRYYRSV---DALFIDDI 232
Cdd:PRK08116 155 NRIKSTYKSSGKEDENEIIRSLvnaDLLILDDL 187
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
124-232 |
9.31e-03 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 37.89 E-value: 9.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640581526 124 RSNINPTYQ---FDNF-VEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYmhse 199
Cdd:PRK12377 61 RSGIQPLHRkcsFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT---- 136
|
90 100 110
....*....|....*....|....*....|....*...
gi 640581526 200 rfVQDMVKALQN-----NAIEDFKRYYRSVDALFIDDI 232
Cdd:PRK12377 137 --VPDVMSRLHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| |
