|
Name |
Accession |
Description |
Interval |
E-value |
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-343 |
0e+00 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 622.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRAL 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 241 IGDVIAQELPPALKARVAERLKSGRGHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQIDEIQGQAFGSLAVLAGGEP 320
Cdd:PRK11153 241 IQSTLHLDLPEDYLARLQAEPTTGSGPLLRLEFTGESVDAPLLSETARRFGVDFNILSGQIDYIGGVKFGSLLVELTGDP 320
|
330 340
....*....|....*....|...
gi 640674200 321 GKVGEALAYLREQGVVVEELSHV 343
Cdd:PRK11153 321 GDIQAAIAYLQEHGVKVEVLGYV 343
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-340 |
0e+00 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 586.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:COG1135 1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRAL 240
Cdd:COG1135 161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 241 IGDVIAQELPPALKARVAERlkSGRGHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQIDEIQGQAFGSLAVLAGGEP 320
Cdd:COG1135 241 LPTVLNDELPEELLARLREA--AGGGRLVRLTFVGESADEPLLSELARRFGVDVNILSGGIEEIQGTPVGRLIVELEGDD 318
|
330 340
....*....|....*....|
gi 640674200 321 GKVGEALAYLREQGVVVEEL 340
Cdd:COG1135 319 AAIDAALAYLREQGVVVEVL 338
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-232 |
6.07e-147 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 413.52 E-value: 6.07e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
|
| ABC_MetN |
TIGR02314 |
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ... |
1-343 |
5.47e-133 |
|
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 382.69 E-value: 5.47e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRAL 240
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 241 IGDVIAQELPPALKARVAERLKSGRGHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQIDEIQGQAFGSLAVLAGGEP 320
Cdd:TIGR02314 241 IRSTLHLSIPEDYQERLQATPFADSVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGTQ 320
|
330 340
....*....|....*....|...
gi 640674200 321 GKVGEALAYLREQGVVVEELSHV 343
Cdd:TIGR02314 321 QDTQAAIAYLQEHNVKVEVLGYV 343
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-244 |
1.87e-101 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 298.45 E-value: 1.87e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlSAADLRAA 80
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTD-SKKDINKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLaPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRA 239
Cdd:COG1126 156 KVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRA 234
|
....*
gi 640674200 240 LIGDV 244
Cdd:COG1126 235 FLSKV 239
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-241 |
1.42e-97 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 298.36 E-value: 1.42e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFA-GPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRA 79
Cdd:COG1123 260 LLEVRNLSKRYPvRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQH-FNLLSSR-TVYENVALPLELAGV-KRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARAL 155
Cdd:COG1123 340 LRRRVQMVFQDpYSSLNPRmTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLPPDlADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHE 235
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHP 499
|
....*.
gi 640674200 236 VTRALI 241
Cdd:COG1123 500 YTRALL 505
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-241 |
9.46e-95 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 281.48 E-value: 9.46e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:COG1127 5 MIEVRNLTKSFGD----RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPL-ELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENVAFPLrEHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPViEVFMQPHHEVTRA 239
Cdd:COG1127 161 EILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTP-EELLASDDPWVRQ 239
|
..
gi 640674200 240 LI 241
Cdd:COG1127 240 FL 241
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-242 |
4.39e-92 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 277.70 E-value: 4.39e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRP--SEGNVVVDGRDLTALSAADL 77
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAIlGLLPPPgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAAR-RDIGMIFQhfNLLSS----RTVYENVALPLEL-AGVKRAEIEATVLPLLELVGLTAQK---DRYPAQISGGQKQR 148
Cdd:COG0444 81 RKIRgREIQMIFQ--DPMTSlnpvMTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPErrlDRYPHELSGGMRQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDPeTTRA-ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIE 227
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDV-TIQAqILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 237
|
250
....*....|....*
gi 640674200 228 VFMQPHHEVTRALIG 242
Cdd:COG0444 238 LFENPRHPYTRALLS 252
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-221 |
4.48e-92 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 274.23 E-value: 4.48e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:COG1136 4 LLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRD-IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:COG1136 84 RRRhIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGRVVE 221
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRIVS 224
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-221 |
1.76e-88 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 264.99 E-value: 1.76e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwvEALHDVNLTIPRGE-VFgIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRA 79
Cdd:COG2884 1 MIRFENVSKRYPGGR---EALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:COG2884 77 LRRRIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINReLGLTIVLITHQMEVIKQVCDRVAVLDAGRVVE 221
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-219 |
1.93e-88 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 264.74 E-value: 1.93e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAR 81
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RD-IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03255 81 RRhIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGRV 219
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-220 |
7.02e-86 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 259.22 E-value: 7.02e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:COG3638 2 MLELRNLSKRYPGG---TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENValpleLAG--------------VKRAEIEAtVLPLLELVGLTAQKDRYPAQISGGQK 146
Cdd:COG3638 79 RRRIGMIFQQFNLVPRLSVLTNV-----LAGrlgrtstwrsllglFPPEDRER-ALEALERVGLADKAYQRADQLSGGQQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 147 QRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:COG3638 153 QRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-229 |
2.21e-85 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 257.43 E-value: 2.21e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAR 81
Cdd:cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPL-ELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLrEHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-246 |
3.50e-84 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 254.73 E-value: 3.50e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaADLRAA 80
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTR---RRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFnlLSS----RTVYENVALPLELAGvkRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARAL 155
Cdd:COG1124 78 RRRVQMVFQDP--YASlhprHTVDRILAEPLRIHG--LPDREERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHE 235
Cdd:COG1124 154 ILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHP 233
|
250
....*....|.
gi 640674200 236 VTRALIGDVIA 246
Cdd:COG1124 234 YTRELLAASLA 244
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-223 |
8.05e-84 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 253.20 E-value: 8.05e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQhfNLLSS----RTVYENVALPLELAGV--KRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIAR 153
Cdd:cd03257 81 RKEIQMVFQ--DPMSSlnprMTIGEQIAEPLRIHGKlsKKEARKEAVLLLLVGVGLPEEvLNRYPHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-219 |
2.74e-83 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 251.29 E-value: 2.74e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlSAADLRAAR 81
Cdd:cd03262 1 IEIKNLHKSF-GDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD-DKKNINELR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03262 76 QKVGMVFQQFNLFPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-241 |
2.60e-81 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 250.42 E-value: 2.60e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRF-------AGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA 74
Cdd:COG4608 8 LEVRDLKKHFpvrgglfGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 75 ADLRAARRDIGMIFQH-FNLLSSR-TVYENVALPLELAGVK-RAEIEATVLPLLELVGL-TAQKDRYPAQISGGQKQRVG 150
Cdd:COG4608 88 RELRPLRRRMQMVFQDpYASLNPRmTVGDIIAEPLRIHGLAsKAERRERVAELLELVGLrPEHADRYPHEFSGGQRQRIG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDpETTRA-ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:COG4608 168 IARALALNPKLIVCDEPVSALD-VSIQAqVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELY 246
|
250
....*....|..
gi 640674200 230 MQPHHEVTRALI 241
Cdd:COG4608 247 ARPLHPYTQALL 258
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-232 |
8.99e-81 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 250.02 E-value: 8.99e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAA 80
Cdd:COG3842 5 ALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVT-----GLPPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG3842 76 KRNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPR 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITH-QMEVIkQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:COG3842 156 VLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHdQEEAL-ALADRIAVMNDGRIEQVGTPEEIYERP 227
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-228 |
1.72e-80 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 245.77 E-value: 1.72e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadlraa 80
Cdd:COG1116 7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG1116 80 -PDRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQME--VIkqVCDRVAVLDA--GRVVEtgpVIEV 228
Cdd:COG1116 159 VLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDeaVF--LADRVVVLSArpGRIVE---EIDV 225
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-232 |
2.16e-80 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 244.55 E-value: 2.16e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaADLRAAR 81
Cdd:COG1122 1 IELENLSFSYPGG---TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITK---KNLRELR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG1122 75 RKVGLVFQNpDDQLFAPTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:COG1122 155 VLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-225 |
9.43e-79 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 240.07 E-value: 9.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaadlraAR 81
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--------PG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03293 73 PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDA--GRVVETGPV 225
Cdd:cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAEVEV 218
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
16-244 |
1.65e-78 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 241.01 E-value: 1.65e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 16 GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARR-DIGMIFQHFNLL 94
Cdd:cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRkKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 175 TTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALIGDV 244
Cdd:cd03294 195 IRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGV 264
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-223 |
6.16e-78 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 237.80 E-value: 6.16e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlraaR 81
Cdd:cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE-----R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-225 |
1.17e-76 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 235.34 E-value: 1.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsAADLRAAR 81
Cdd:COG1131 1 IEVRGLTKRYGD----KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDV----ARDPAEVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:COG1131 73 RRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPV 225
Cdd:COG1131 153 LILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTP 215
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-223 |
1.70e-76 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 240.01 E-value: 1.70e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFaGPQ---------------------GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSE 59
Cdd:COG4175 3 KIEVRNLYKIF-GKRperalklldqgkskdeilektGQTVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 60 GNVVVDGRDLTALSAADLRAARR-DIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYP 138
Cdd:COG4175 82 GEVLIDGEDITKLSKKELRELRRkKMSMVFQHFALLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWEDSYP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 139 AQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM-EVIKqVCDRVAVLDAG 217
Cdd:COG4175 162 DELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMQDELLELQAKLKKTIVFITHDLdEALR-LGDRIAIMKDG 240
|
....*.
gi 640674200 218 RVVETG 223
Cdd:COG4175 241 RIVQIG 246
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-228 |
3.49e-76 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 234.50 E-value: 3.49e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:TIGR02315 1 MLEVENLSKVY--PNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENV---------ALPLELAGVKRAEIEaTVLPLLELVGLTAQKDRYPAQISGGQKQRVGI 151
Cdd:TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVlhgrlgykpTWRSLLGRFSEEDKE-RALSALERVGLADKAYQRADQLSGGQQQRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-256 |
1.32e-75 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 241.35 E-value: 1.32e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPS---EGNVVVDGRDLTALSAADL 77
Cdd:COG1123 4 LLEVRDLSVRY--PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RaarRDIGMIFQHF-NLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:COG1123 82 G---RRIGMVFQDPmTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPH--- 233
Cdd:COG1123 159 LDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQala 238
|
250 260
....*....|....*....|....*.
gi 640674200 234 ---HEVTRALIGDVIAQELPPALKAR 256
Cdd:COG1123 239 avpRLGAARGRAAPAAAAAEPLLEVR 264
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-224 |
2.39e-75 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 232.07 E-value: 2.39e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAR 81
Cdd:cd03256 1 IEVENLSKTYPNG---KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENV---------ALPLELAGVKRAEIEATvLPLLELVGLTAQKDRYPAQISGGQKQRVGIA 152
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLENVlsgrlgrrsTWRSLFGLFPKEEKQRA-LAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 153 RALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-241 |
7.30e-75 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 239.97 E-value: 7.30e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGW-------VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLtrPSEGNVVVDGRDLTALS 73
Cdd:COG4172 276 LEARDLKVWFPIKRGLfrrtvghVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALlRLI--PSEGEIRFDGQDLDGLS 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 AADLRAARRDIGMIFQH-FNLLSSR-TVYENVALPLEL--AGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQR 148
Cdd:COG4172 354 RRALRPLRRRMQVVFQDpFGSLSPRmTVGQIIAEGLRVhgPGLSAAERRARVAEALEEVGLDPAaRHRYPHEFSGGQRQR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDpETTRA-ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIE 227
Cdd:COG4172 434 IAIARALILEPKLLVLDEPTSALD-VSVQAqILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQ 512
|
250
....*....|....
gi 640674200 228 VFMQPHHEVTRALI 241
Cdd:COG4172 513 VFDAPQHPYTRALL 526
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-244 |
4.48e-73 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 230.03 E-value: 4.48e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaaDLRAAR 81
Cdd:COG1118 3 IEVRNISKRFGSFT----LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFT----NLPPRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:COG1118 75 RRVGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:COG1118 155 LLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFL 234
|
...
gi 640674200 242 GDV 244
Cdd:COG1118 235 GCV 237
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-224 |
5.00e-73 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 225.78 E-value: 5.00e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAaDLRAA 80
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDE-DARAR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 --RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLplLELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:COG4181 87 lrARHVGFVFQSFQLLPTLTALENVMLPLELAGRRDARARARAL--LERVGLGHRLDHYPAQLSGGEQQRVALARAFATE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:COG4181 165 PAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTA 229
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-232 |
1.08e-72 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 229.19 E-value: 1.08e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAA 80
Cdd:COG3839 3 SLELENVSKSYGG----VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVT-----DLPPK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG3839 74 DRNIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 161 VLLSDEATSALDP---ETTRAildLLRRINRELGLTIVLITH-QMEVIkQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:COG3839 154 VFLLDEPLSNLDAklrVEMRA---EIKRLHRRLGTTTIYVTHdQVEAM-TLADRIAVMNDGRIQQVGTPEELYDRP 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-218 |
2.41e-72 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 223.50 E-value: 2.41e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFagPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaarR 82
Cdd:cd03225 1 ELKNLSFSY--PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR---R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQHFNL-LSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03225 76 KVGLVFQNPDDqFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-232 |
3.73e-72 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 225.02 E-value: 3.73e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFA-GPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:TIGR04521 1 IKLKNVSYIYQpGTPFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQhF--NLLSSRTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLT-AQKDRYPAQISGGQKQRVGIARALA 156
Cdd:TIGR04521 81 RKKVGLVFQ-FpeHQLFEETVYKDIAFgPKNL-GLSEEEAEERVKEALELVGLDeEYLERSPFELSGGQMRRVAIAGVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:TIGR04521 159 MEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDV 234
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-232 |
2.33e-70 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 219.19 E-value: 2.33e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlSAADLRAA 80
Cdd:PRK09493 1 MIEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-242 |
3.77e-70 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 218.71 E-value: 3.77e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaar 81
Cdd:cd03295 1 IEFENVTKRYGGGK---KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQK--DRYPAQISGGQKQRVGIARALASKP 159
Cdd:cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRA 239
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
...
gi 640674200 240 LIG 242
Cdd:cd03295 235 FVG 237
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-218 |
4.21e-70 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 216.28 E-value: 4.21e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaADLRAAR 81
Cdd:cd03229 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE-DELPPLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLelagvkraeieatvlpllelvgltaqkdrypaqiSGGQKQRVGIARALASKPKV 161
Cdd:cd03229 76 RRIGMVFQDFALFPHLTVLENIALGL----------------------------------SGGQQQRVALARALAMDPDV 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-231 |
6.12e-70 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 219.22 E-value: 6.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtaLSAADLRAAR 81
Cdd:TIGR04520 1 IEVENVS--FSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT--LDEENLWEIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:TIGR04520 77 KKVGMVFQNpDNQFVGATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM-EVIKqvCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:TIGR04520 157 IIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMeEAVL--ADRVIVMNKGKIVAEGTPREIFSQ 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-256 |
9.19e-70 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 226.87 E-value: 9.19e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPS---EGNVVVDGRDLTALSAAD 76
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSIlRLLPDPAahpSGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAAR-RDIGMIFQ---------HfnllssrTVYENVALPLEL-AGVKRAEIEATVLPLLELVGLTAQK---DRYPAQIS 142
Cdd:COG4172 86 LRRIRgNRIAMIFQepmtslnplH-------TIGKQIAEVLRLhRGLSGAAARARALELLERVGIPDPErrlDAYPHQLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 143 GGQKQRVGIARALASKPKVLLSDEATSALDPeTTRA-ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVE 221
Cdd:COG4172 159 GGQRQRVMIAMALANEPDLLIADEPTTALDV-TVQAqILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVE 237
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 640674200 222 TGPVIEVFMQPHHEVTRALIG-------DVIAQELPPALKAR 256
Cdd:COG4172 238 QGPTAELFAAPQHPYTRKLLAaeprgdpRPVPPDAPPLLEAR 279
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-225 |
4.68e-69 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 215.51 E-value: 4.68e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLL-----TRPSEGNVVVDGRDLTALSAaD 76
Cdd:cd03260 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDV-D 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAARRDIGMIFQHFNLLSSrTVYENVALPLELAGVK-RAEIEATVLPLLELVGLTAQ-KDRYPA-QISGGQKQRVGIAR 153
Cdd:cd03260 76 VLELRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIKlKEELDERVEEALRKAALWDEvKDRLHAlGLSGGQQQRLCLAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPV 225
Cdd:cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-228 |
1.00e-67 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 212.98 E-value: 1.00e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLT---RPSEGNVVVDGRDLTALSAAdl 77
Cdd:COG0411 4 LLEVRGLTKRFGG----LVAVDDVSLEVERGEIVGLIGPNGAGKTTL---FNLITgfyRPTSGRILFDGRDITGLPPH-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAARRDIGMIFQHFNLLSSRTVYENVALP-------------LELAGVKRAEIEAT--VLPLLELVGLTAQKDRYPAQIS 142
Cdd:COG0411 75 RIARLGIARTFQNPRLFPELTVLENVLVAaharlgrgllaalLRLPRARREEREARerAEELLERVGLADRADEPAGNLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 143 GGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVET 222
Cdd:COG0411 155 YGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAE 234
|
....*.
gi 640674200 223 GPVIEV 228
Cdd:COG0411 235 GTPAEV 240
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-232 |
4.32e-67 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 210.56 E-value: 4.32e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAAR 81
Cdd:cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT-----NLPPHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-235 |
2.34e-66 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 209.66 E-value: 2.34e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLT-------ALS 73
Cdd:COG4598 8 ALEVRDLHKSF----GDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgELV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 AADLRAARR---DIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRV 149
Cdd:COG4598 84 PADRRQLQRirtRLGMVFQSFNLWSHMTVLENVIEaPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:COG4598 164 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVF 242
|
....*.
gi 640674200 230 MQPHHE 235
Cdd:COG4598 243 GNPKSE 248
|
|
| ectoine_ehuA |
TIGR03005 |
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ... |
2-246 |
4.90e-66 |
|
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Pssm-ID: 132050 [Multi-domain] Cd Length: 252 Bit Score: 208.92 E-value: 4.90e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLT-------ALSA 74
Cdd:TIGR03005 1 VRFSDVTKRF----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYhmpgrngPLVP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 75 AD---LRAARRDIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVG 150
Cdd:TIGR03005 77 ADekhLRQMRNKIGMVFQSFNLFPHKTVLDNVTEaPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
250
....*....|....*.
gi 640674200 231 QPHHEVTRALIGDVIA 246
Cdd:TIGR03005 237 QPKEERTREFLSKVIA 252
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-241 |
2.11e-65 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 207.20 E-value: 2.11e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLL--TRPS---EGNVVVDGRDLTAlSAAD 76
Cdd:COG1117 12 IEVRNLNVYYGDKQ----ALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPGarvEGEILLDGEDIYD-PDVD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAARRDIGMIFQHFNLLSSrTVYENVALPLELAGVK-RAEIEATVLPLLELVGLTAQ-KDR---YPAQISGGQKQRVGI 151
Cdd:COG1117 87 VVELRRRVGMVFQKPNPFPK-SIYDNVAYGLRLHGIKsKSELDEIVEESLRKAALWDEvKDRlkkSALGLSGGQQQRLCI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:COG1117 166 ARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTN 243
|
250
....*....|
gi 640674200 232 PHHEVTRALI 241
Cdd:COG1117 244 PKDKRTEDYI 253
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-228 |
1.64e-63 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 202.01 E-value: 1.64e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDltalSAADLRAA 80
Cdd:COG4555 1 MIEVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGED----VRKEPREA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG4555 73 RRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPK 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:COG4555 153 VLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-243 |
9.45e-63 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 199.87 E-value: 9.45e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraar 81
Cdd:cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKR----AEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSErppeAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVT 237
Cdd:cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
....*.
gi 640674200 238 RALIGD 243
Cdd:cd03296 234 YSFLGE 239
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-228 |
8.00e-62 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 197.27 E-value: 8.00e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlRAAR 81
Cdd:cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH--EIAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGV----------KRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGI 151
Cdd:cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGsglllararrEEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
19-235 |
8.52e-62 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 197.54 E-value: 8.52e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR--DL-TALSAADLRAARRDIGMIFQHFNLLS 95
Cdd:PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFsKTPSDKAIRELRRNVGMVFQQYNLWP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 96 SRTVYEN-VALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PRK11124 96 HLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 175 TTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPvIEVFMQPHHE 235
Cdd:PRK11124 176 ITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQTE 234
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-223 |
8.96e-62 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 196.32 E-value: 8.96e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAAR 81
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT-----DLPPKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITH-QMEVIkQVCDRVAVLDAGRVVETG 223
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHdQVEAM-TMADRIAVMNDGQIQQIG 213
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-219 |
9.06e-62 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 196.47 E-value: 9.06e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAR 81
Cdd:cd03292 1 IEFINVTKTY--PNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-244 |
1.27e-61 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 197.19 E-value: 1.27e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraA 80
Cdd:COG1120 1 MLEAENLSVGYGG----RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRREL--A 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRdIGMIFQHFNLLSSRTVYENVAL---P-LELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:COG1120 75 RR-IAYVPQEPPAPFGLTVRELVALgryPhLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfmqphheV 236
Cdd:COG1120 154 QEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV-------L 226
|
....*...
gi 640674200 237 TRALIGDV 244
Cdd:COG1120 227 TPELLEEV 234
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-247 |
1.91e-61 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 196.89 E-value: 1.91e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEG-----NVVVDGRDLTALSAA 75
Cdd:PRK11264 3 AIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGtirvgDITIDTARSLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQHFNLLSSRTVYENVAL-PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARA 154
Cdd:PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEgPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHH 234
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237
|
250
....*....|...
gi 640674200 235 EVTRALIGDVIAQ 247
Cdd:PRK11264 238 PRTRQFLEKFLLQ 250
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
16-244 |
2.59e-61 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 200.08 E-value: 2.59e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 16 GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARR-DIGMIFQHFNLL 94
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRkKIGMVFQQFALF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 175 TTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALIGDV 244
Cdd:TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKV 233
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-219 |
3.76e-60 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 190.69 E-value: 3.76e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaaDLRAAR 81
Cdd:cd03230 1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK----EPEEVK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALplelagvkraeieatvlpllelvgltaqkdrypaqiSGGQKQRVGIARALASKPKV 161
Cdd:cd03230 73 RRIGYLPEEPSLYENLTVRENLKL------------------------------------SGGMKQRLALAQALLHDPEL 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:cd03230 117 LILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-235 |
8.80e-60 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 192.15 E-value: 8.80e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR--DLTA-LSAADLR 78
Cdd:COG4161 3 IQLKNINCFY----GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQkPSEKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQHFNLLSSRTVYEN-VALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:COG4161 79 LLRQKVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINrELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPvIEVFMQPHHE 235
Cdd:COG4161 159 EPQVLLFDEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQTE 234
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
3-244 |
2.34e-58 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 191.46 E-value: 2.34e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARR 82
Cdd:PRK15079 19 DIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQhfNLLSS----RTVYENVALPLEL--AGVKRAEIEATVLPLLELVGLTAQK-DRYPAQISGGQKQRVGIARAL 155
Cdd:PRK15079 99 DIQMIFQ--DPLASlnprMTIGEIIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLLPNLiNRYPHEFSGGQCQRIGIARAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHE 235
Cdd:PRK15079 177 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHP 256
|
....*....
gi 640674200 236 VTRALIGDV 244
Cdd:PRK15079 257 YTKALMSAV 265
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-242 |
2.13e-57 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 185.73 E-value: 2.13e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwvEALHdVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraa 80
Cdd:COG3840 1 MLRLDDLTYRYGD-----FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rRDIGMIFQHFNLLSSRTVYENVAL---P-LELAGVKRAEIEAtvlpLLELVGLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:COG3840 71 -RPVSMLFQENNLFPHLTVAQNIGLglrPgLKLTAEQRAQVEQ----ALERVGLAGLLDRLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEV 236
Cdd:COG3840 146 RKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPA 225
|
....*.
gi 640674200 237 TRALIG 242
Cdd:COG3840 226 LAAYLG 231
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-233 |
1.09e-56 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 185.01 E-value: 1.09e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFA-----GPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAA 75
Cdd:TIGR02769 2 LLEVRDVTHTYRtgglfGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQH----FNllSSRTVYENVALPLE-LAGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRV 149
Cdd:TIGR02769 82 QRRAFRRDVQLVFQDspsaVN--PRMTVRQIIGEPLRhLTSLDESEQKARIAELLDMVGLRSEdADKLPRQLSGGQLQRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
....
gi 640674200 230 MQPH 233
Cdd:TIGR02769 240 SFKH 243
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-224 |
4.10e-56 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 193.90 E-value: 4.10e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaar 81
Cdd:COG2274 474 IELENVSFRYPGDSPPV--LDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLR--- 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHfNLLSSRTVYENVALPLELAGVKRAeIEAtvlplLELVGLTAQKDRYP-----------AQISGGQKQRVG 150
Cdd:COG2274 549 RQIGVVLQD-VFLFSGTIRENITLGDPDATDEEI-IEA-----ARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGT 692
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-219 |
4.32e-56 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 181.55 E-value: 4.32e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGwveaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaar 81
Cdd:COG4619 1 LELEGLSFRVGGKPI----LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWR--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENVALPLELAgvKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG4619 74 RQVAYVPQEPALWGG-TVRDNLPFPFQLR--ERKFDRERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPD 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:COG4619 151 VLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-268 |
1.17e-54 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 186.38 E-value: 1.17e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAA 80
Cdd:COG1129 4 LLEMRGISKSFGG----VKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRD--AQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAG---VKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:COG1129 78 AAGIAIIHQELNLVPNLSVAENIFLGREPRRgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfmqPHHEVT 237
Cdd:COG1129 158 DARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL---TEDELV 233
|
250 260 270
....*....|....*....|....*....|....*
gi 640674200 238 RALIGDVIAQELPPALKARVAERLK----SGRGHL 268
Cdd:COG1129 234 RLMVGRELEDLFPKRAAAPGEVVLEveglSVGGVV 268
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-229 |
1.70e-54 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 178.74 E-value: 1.70e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsaadlRAA 80
Cdd:COG1121 6 AIELENLTVSYGG----RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP--------RRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSR--TVYENVALPL-----ELAGVKRAEIEAtVLPLLELVGLTAQKDRYPAQISGGQKQRVGIAR 153
Cdd:COG1121 74 RRRIGYVPQRAEVDWDFpiTVRDVVLMGRygrrgLFRRPSRADREA-VDEALERVGLEDLADRPIGELSGGQQQRVLLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDaGRVVETGPVIEVF 229
Cdd:COG1121 153 ALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLN-RGLVAHGPPEEVL 226
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
2-241 |
2.25e-54 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 178.88 E-value: 2.25e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGW-----VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltALSAAD 76
Cdd:COG4167 5 LEVRNLSKTFKYRTGLfrrqqFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGH---KLEYGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAARRDIGMIFQHFN--LLSSRTVYENVALPLELA----GVKRAE-IEATvlplLELVGLTA-QKDRYPAQISGGQKQR 148
Cdd:COG4167 82 YKYRCKHIRMIFQDPNtsLNPRLNIGQILEEPLRLNtdltAEEREErIFAT----LRLVGLLPeHANFYPHMLSSGQKQR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:COG4167 158 VALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAEV 237
|
250
....*....|...
gi 640674200 229 FMQPHHEVTRALI 241
Cdd:COG4167 238 FANPQHEVTKRLI 250
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-265 |
3.64e-54 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 181.68 E-value: 3.64e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAAR 81
Cdd:PRK09452 15 VELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT-----HVPAEN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245
|
250 260
....*....|....*....|....
gi 640674200 242 GDViaqelpPALKARVAERLKSGR 265
Cdd:PRK09452 246 GEI------NIFDATVIERLDEQR 263
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-259 |
3.64e-54 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 178.73 E-value: 3.64e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFA-----GPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAA 75
Cdd:PRK10419 3 LLNVSGLSHHYAhgglsGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQH----FNllSSRTVYENVALPLE-LAGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRV 149
Cdd:PRK10419 83 QRKAFRRDIQMVFQDsisaVN--PRKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQLQRV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVf 229
Cdd:PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK- 239
|
250 260 270
....*....|....*....|....*....|
gi 640674200 230 MQPHHEVTRALIGDViaqeLPPALKARVAE 259
Cdd:PRK10419 240 LTFSSPAGRVLQNAV----LPAFPVRRRTT 265
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-227 |
4.21e-54 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 176.79 E-value: 4.21e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaaDLRAAR 81
Cdd:cd03265 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR----EPREVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIE 227
Cdd:cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
19-232 |
4.51e-54 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 178.24 E-value: 4.51e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAD----------LRAARRDIGMIF 88
Cdd:PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlkvadknqLRLLRTRLTMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 89 QHFNLLSSRTVYENV-ALPLELAGVKRAEIEATVLPLLELVGLT-AQKDRYPAQISGGQKQRVGIARALASKPKVLLSDE 166
Cdd:PRK10619 99 QHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDeRAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 167 ATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK10619 179 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-218 |
5.87e-54 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 174.88 E-value: 5.87e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAr 81
Cdd:cd03228 1 IEFKNVS--FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 rdIGMIFQHFNLLSsRTVYENValplelagvkraeieatvlpllelvgltaqkdrypaqISGGQKQRVGIARALASKPKV 161
Cdd:cd03228 78 --IAYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGR 218
Cdd:cd03228 118 LILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-222 |
7.11e-54 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 177.75 E-value: 7.11e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlraa 80
Cdd:COG4525 3 MLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGA------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rrDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG4525 77 --DRGVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDA--GRVVET 222
Cdd:COG4525 155 FLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIVER 218
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
23-275 |
3.74e-53 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 178.76 E-value: 3.74e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtaLSAA---DLRAARRDIGMIFQHFNLLSSRTV 99
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVL--QDSArgiFLPPHRRRIGYVFQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 YENValpleLAGVKRAEIEATVLPL---LELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETT 176
Cdd:COG4148 95 RGNL-----LYGRKRAPRAERRISFdevVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 177 RAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHevtRALIGDVIAQELppaLKAR 256
Cdd:COG4148 170 AEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDL---LPLAGGEEAGSV---LEAT 243
|
250
....*....|....*....
gi 640674200 257 VAERLKsgRGHLLRLAFTG 275
Cdd:COG4148 244 VAAHDP--DYGLTRLALGG 260
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-235 |
4.57e-53 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 174.83 E-value: 4.57e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRfagpqgWVE-ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAA 80
Cdd:cd03299 1 LKVENLSKD------WKEfKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-----NLPPE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHE 235
Cdd:cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNE 224
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-243 |
4.73e-53 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 178.37 E-value: 4.73e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlraaR 81
Cdd:PRK11432 7 VVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ-----Q 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRELGLTIVLITH-QMEVIKqVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRAL 240
Cdd:PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHdQSEAFA-VSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236
|
...
gi 640674200 241 IGD 243
Cdd:PRK11432 237 MGD 239
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-227 |
7.92e-53 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 173.46 E-value: 7.92e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTlvrTINLLT---RPSEGNVVVDGRDLtalsAADLR 78
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTT---TLKMLTgelRPTSGTAYINGYSI----RTDRK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:cd03263 72 AARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIE 227
Cdd:cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-229 |
2.10e-52 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 174.43 E-value: 2.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaar 81
Cdd:PRK13635 6 IRVEHISFRY--PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK13635 81 RQVGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQA-DRVIVMNKGEILEEGTPEEIF 228
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-262 |
3.21e-52 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 179.84 E-value: 3.21e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAA 80
Cdd:COG3845 5 ALELRGITKRFGG----VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRD--AI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVAL---PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:COG3845 79 ALGIGMVHQHFMLVPNLTVAENIVLglePTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfmqPHHEVT 237
Cdd:COG3845 159 GARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAET---SEEELA 234
|
250 260
....*....|....*....|....*
gi 640674200 238 RALIGDVIAQELPPALKARVAERLK 262
Cdd:COG3845 235 ELMVGREVLLRVEKAPAEPGEVVLE 259
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-231 |
3.40e-52 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 174.12 E-value: 3.40e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVE--ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDltALSAADLR 78
Cdd:PRK13633 4 MIKCKNVSYKYESNEESTEklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD--TSDEENLW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:PRK13633 82 DIRNKAGMVFQNpDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEA-DRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-244 |
3.57e-52 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 176.04 E-value: 3.57e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraar 81
Cdd:PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLE-LAGVKR---AEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTvLPRRERpnaAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVT 237
Cdd:PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFV 233
|
....*..
gi 640674200 238 RALIGDV 244
Cdd:PRK10851 234 LEFMGEV 240
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
8-242 |
2.36e-51 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 173.23 E-value: 2.36e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 8 SQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARRDIGMI 87
Cdd:PRK11308 18 KRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 88 FQH-FNLLSSR-TVYENVALPLEL-AGVKRAEIEATVLPLLELVGL-TAQKDRYPAQISGGQKQRVGIARALASKPKVLL 163
Cdd:PRK11308 98 FQNpYGSLNPRkKVGQILEEPLLInTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 164 SDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALIG 242
Cdd:PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLS 256
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
19-229 |
6.34e-51 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 171.00 E-value: 6.34e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAaDLRAARRDIGMIFQHFNL-LSSR 97
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV-KLSDIRKKVGLVFQYPEYqLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQ--KDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPET 175
Cdd:PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEdyKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 640674200 176 TRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
1.33e-50 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 169.40 E-value: 1.33e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGrdlTALSAADLRAA 80
Cdd:PRK13632 7 MIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG---ITISKENLKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13632 82 RKKIGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM-EVIKqvCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMdEAIL--ADKVIVFSEGKLIAQGKPKEIL 230
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-241 |
1.72e-50 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 170.86 E-value: 1.72e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSeGNVVVD-----GRDLTALSAA 75
Cdd:COG4170 3 LLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDN-WHVTADrfrwnGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRA-ARRDIGMIFQHFN--LLSSRTVYENV--ALPLELAGV---------KRAEIEatvlpLLELVGLTAQKD---RYP 138
Cdd:COG4170 82 ERRKiIGREIAMIFQEPSscLDPSAKIGDQLieAIPSWTFKGkwwqrfkwrKKRAIE-----LLHRVGIKDHKDimnSYP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 139 AQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:COG4170 157 HELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQ 236
|
250 260
....*....|....*....|...
gi 640674200 219 VVETGPVIEVFMQPHHEVTRALI 241
Cdd:COG4170 237 TVESGPTEQILKSPHHPYTKALL 259
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-279 |
3.80e-50 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 171.56 E-value: 3.80e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsaADLRAA 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-----SHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPE----TTRAILDLLRRInrelGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEV 236
Cdd:PRK11607 170 LLLLDEPMGALDKKlrdrMQLEVVDILERV----GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 640674200 237 TRALIGDVIAQElpPALKARVAERL---KSGRGHLLRLAFTGSGVD 279
Cdd:PRK11607 246 SAEFIGSVNVFE--GVLKERQEDGLvidSPGLVHPLKVDADASVVD 289
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-223 |
4.16e-50 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 165.30 E-value: 4.16e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraarr 82
Cdd:cd03214 1 EVENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 digmifqhfnllssrtvyenvalplelagvkRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVL 162
Cdd:cd03214 71 -------------------------------LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL 119
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 163 LSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-224 |
6.19e-50 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 175.35 E-value: 6.19e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:COG1132 340 IEFENVS--FSYPGD-RPVLKDISLTIPPGETVALVGPSGSGKSTLV---NLLLRfydPTSGRILIDGVDIRDLTLESLR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AArrdIGMIFQHFNLLSsRTVYENVALPLELAGvkRAEIEATvlplLELVGL----TAQKDRYPAQI-------SGGQKQ 147
Cdd:COG1132 414 RQ---IGVVPQDTFLFS-GTIRENIRYGRPDAT--DEEVEEA----AKAAQAhefiEALPDGYDTVVgergvnlSGGQRQ 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 148 RVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:COG1132 484 RIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGT 557
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-231 |
1.89e-49 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 166.83 E-value: 1.89e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaa 80
Cdd:PRK13650 4 IIEVKNLTFKYKEDQEKYT-LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13650 81 -HKIGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKqVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-223 |
1.97e-49 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 164.85 E-value: 1.97e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDltalSAADLRAA 80
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD----VVKEPAEA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-237 |
2.30e-49 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 165.86 E-value: 2.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTR--PS---EGNVVVDGRDLTALSAAD 76
Cdd:PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIFKMDVIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRaarRDIGMIFQHFNLLSSRTVYENVALPLELAGV--KRAEIEATVLPLLELVGLTAQ-KDRYPA---QISGGQKQRVG 150
Cdd:PRK14247 80 LR---RRVQMVFQIPNPIPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLWDEvKDRLDApagKLSGGQQQRLC 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
....*..
gi 640674200 231 QPHHEVT 237
Cdd:PRK14247 235 NPRHELT 241
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-223 |
5.10e-49 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 163.52 E-value: 5.10e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGeVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaaDLRAAR 81
Cdd:cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK----QPQKLR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRI--NRelglTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELgeDR----IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-220 |
5.11e-49 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 163.89 E-value: 5.11e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:PRK10908 1 MIRFEHVSKAYLGGR---QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINReLGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-169 |
1.24e-48 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 160.51 E-value: 1.24e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAARRDIGMIFQHFNLLSSRTVY 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDD---ERKSLRKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 101 ENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDR----YPAQISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:pfam00005 78 ENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRpvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-224 |
2.23e-48 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 162.22 E-value: 2.23e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraAR 81
Cdd:cd03224 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER--AR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLE-LAGVKRAEIEATVLPLLELvgLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYaRRRAKRKARLERVYELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPK 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-223 |
2.32e-48 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 161.93 E-value: 2.32e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsaadlRAARR 82
Cdd:cd03235 1 EVEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL--------EKERK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQHFNLLSSR--TVYENVALPLE-----LAGVKRAEIEAtVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARAL 155
Cdd:cd03235 69 RIGYVPQRRSIDRDFpiSVRDVVLMGLYghkglFRRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDaGRVVETG 223
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-237 |
2.33e-48 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 163.09 E-value: 2.33e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPS-----EGNVVVDGRDLTALSAAD 76
Cdd:PRK14267 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAaRRDIGMIFQHFNLLSSRTVYENVALPLELAGV--KRAEIEATVLPLLELVGLTAQ-KDR---YPAQISGGQKQRVG 150
Cdd:PRK14267 81 IEV-RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEvKDRlndYPSNLSGGQRQRLV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
....*..
gi 640674200 231 QPHHEVT 237
Cdd:PRK14267 238 NPEHELT 244
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-292 |
4.00e-48 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 163.74 E-value: 4.00e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaadlRAA 80
Cdd:COG4152 1 MLELKGLTKRFGD----KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD-------PED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIG-----------MifqhfnllssrTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRV 149
Cdd:COG4152 70 RRRIGylpeerglypkM-----------KVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:COG4152 139 QLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIR 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 230 MQ-PHHEVTraLIGDVIAQELPPALKARVAERlksgRGHLLRLAFTGSGVDQPILSE-----TIRRYEL 292
Cdd:COG4152 218 RQfGRNTLR--LEADGDAGWLRALPGVTVVEE----DGDGAELKLEDGADAQELLRAllargPVREFEE 280
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-218 |
6.03e-48 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 158.95 E-value: 6.03e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAARR 82
Cdd:cd00267 1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL---PLEELRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQhfnllssrtvyenvalplelagvkraeieatvlpllelvgltaqkdrypaqISGGQKQRVGIARALASKPKVL 162
Cdd:cd00267 74 RIGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLL 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 163 LSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:cd00267 103 LLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-232 |
1.10e-47 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 162.50 E-value: 1.10e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTA-LSAADLRAARRDIGMIFQhF--NLLSS 96
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAgKKNKKLKPLRKKVGIVFQ-FpeHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 97 RTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PRK13634 101 ETVEKDICFgPMNF-GVSEEDAKQKAREMIELVGLPEElLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 175 TTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK13634 180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-223 |
2.30e-47 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 168.01 E-value: 2.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraaR 81
Cdd:COG4988 337 IELEDVS--FSYPGG-RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW---R 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENVALPLELAGvkRAEIEAtvlpLLELVGLTAQKDRYP-----------AQISGGQKQRVG 150
Cdd:COG4988 411 RQIAWVPQNPYLFAG-TIRENLRLGRPDAS--DEELEA----ALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETG 223
Cdd:COG4988 484 LARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQ-ADRILVLDDGRIVEQG 553
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-223 |
5.34e-47 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 158.15 E-value: 5.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAAR 81
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ-----KNIEAL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATvlplLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
20-240 |
1.69e-46 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 162.51 E-value: 1.69e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARRD-IGMIFQHFNLLSSRT 98
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKkIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 VYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 179 ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRAL 240
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-222 |
4.15e-46 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 154.12 E-value: 4.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAAR 81
Cdd:cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD--ARR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQhfnllssrtvyenvalplelagvkraeieatvlpllelvgltaqkdrypaqISGGQKQRVGIARALASKPKV 161
Cdd:cd03216 75 AGIAMVYQ---------------------------------------------------LSVGERQMVEIARALARNARL 103
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVET 222
Cdd:cd03216 104 LILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
23-223 |
4.41e-46 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 155.92 E-value: 4.41e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPrGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALS-AADLRAARRDIGMIFQHFNLLSSRTVYE 101
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRkKINLPPQQRKIGLVFQQYALFPHLNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 102 NVALPLElaGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILD 181
Cdd:cd03297 95 NLAFGLK--RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 640674200 182 LLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03297 173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-242 |
1.60e-45 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 155.14 E-value: 1.60e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraA 80
Cdd:COG0410 3 MLEVENLHAGYGG----IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRI--A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGvKRAEIEATVLPLLEL--VgLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:COG0410 77 RLGIGYVPEGRRIFPSLTVEENLLLGAYARR-DRAEVRADLERVYELfpR-LKERRRQRAGTLSGGEQQMLAIGRALMSR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPhhEVTR 238
Cdd:COG0410 155 PKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADP--EVRE 231
|
....
gi 640674200 239 ALIG 242
Cdd:COG0410 232 AYLG 235
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-215 |
2.63e-45 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 154.59 E-value: 2.63e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA---ADL 77
Cdd:PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaakAEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RaaRRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:PRK11629 85 R--NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRD 220
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-232 |
3.74e-45 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 155.73 E-value: 3.74e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGN---VVVDGRDLTALSAADLR 78
Cdd:PRK13640 6 VEFKHVS--FTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAKTVWDIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:PRK13640 84 ---EKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA-DQVLVLDDGKLLAQGSPVEIFSKV 234
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-223 |
4.20e-45 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 153.21 E-value: 4.20e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaadlrAAR 81
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------AAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03269 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
7.09e-45 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 155.01 E-value: 7.09e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTaLSAADLRAA 80
Cdd:PRK13636 5 ILKVEELNYNY--SDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID-YSRKGLMKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13636 81 RESVGMVFQDpDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-234 |
8.87e-45 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 153.01 E-value: 8.87e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlraarrDIGMIFQHFNLLSSRTVY 100
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP--------DRMVVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLE--LAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:TIGR01184 73 ENIALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 179 ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV-FMQPHH 234
Cdd:TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRD 209
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-220 |
1.15e-44 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 152.03 E-value: 1.15e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaadlRAARR 82
Cdd:cd03226 1 RIENISFSYKKGT---EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------KERRK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQHFNL-LSSRTVYENVALPLELAGVKRAEIEAtvlpLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03226 72 SIGYVMQDVDYqLFTDSVREELLLGLKELDAGNEQAET----VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
1.42e-44 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 154.19 E-value: 1.42e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaADLRAA 80
Cdd:PRK13652 3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK---ENIREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFN-LLSSRTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:PRK13652 77 RKFVGLVFQNPDdQIFSPTVEQDIAFgPINL-GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAME 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
23-319 |
1.79e-44 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 156.04 E-value: 1.79e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAA-DLRAARRDIGMIFQHFNLLSSRTVYE 101
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGiFLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 102 NValpleLAGVKRAEIEATVLP---LLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:TIGR02142 95 NL-----RYGMKRARPSERRISferVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 179 ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP-----HHEVTRALIGDVIAQELP--- 250
Cdd:TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPdlpwlAREDQGSLIEGVVAEHDQhyg 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 251 -------------PALKARVAERLksgrghLLRL-AFTGSGVDQPILSETIRryeldfNILHGQIDEIQGQAFGSLAVLA 316
Cdd:TIGR02142 250 ltalrlggghlwvPENLGPTGARL------RLRVpARDVSLALQKPEATSIR------NILPARVVEIEDSDIGRVGVVL 317
|
...
gi 640674200 317 GGE 319
Cdd:TIGR02142 318 ESG 320
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-244 |
9.77e-44 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 153.34 E-value: 9.77e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKS-TLVRTINLLTRPS--EGNVVVDGRDLTALSAADL 77
Cdd:PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANGriGGSATFNGREILNLPEKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAAR-RDIGMIFQhfNLLSSRTVYENVALPL-EL----AGVKRAEIEATVLPLLELVGLTAQKDR---YPAQISGGQKQR 148
Cdd:PRK09473 92 NKLRaEQISMIFQ--DPMTSLNPYMRVGEQLmEVlmlhKGMSKAEAFEESVRMLDAVKMPEARKRmkmYPHEFSGGMRQR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
250
....*....|....*.
gi 640674200 229 FMQPHHEVTRALIGDV 244
Cdd:PRK09473 250 FYQPSHPYSIGLLNAV 265
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
2.08e-43 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 151.00 E-value: 2.08e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTaLSAADLRAA 80
Cdd:PRK13639 1 ILETRDLKYSY--PDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK-YDKKSLLEV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHF-NLLSSRTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:PRK13639 77 RKTVGIVFQNPdDQLFAPTVEEDVAFgPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-244 |
3.31e-43 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 157.71 E-value: 3.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGW-------VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALS 73
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLlnrvtreVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 AADLRAARRDIGMIFQ--HFNLLSSRTVYENVALPLELAGVKRAEIEAT-VLPLLELVGLTAQKD-RYPAQISGGQKQRV 149
Cdd:PRK10261 393 PGKLQALRRDIQFIFQdpYASLDPRQTVGDSIMEPLRVHGLLPGKAAAArVAWLLERVGLLPEHAwRYPHEFSGGQRQRI 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552
|
250
....*....|....*
gi 640674200 230 MQPHHEVTRALIGDV 244
Cdd:PRK10261 553 ENPQHPYTRKLMAAV 567
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-223 |
5.71e-43 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 148.79 E-value: 5.71e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDltaLSAADLRAAR 81
Cdd:cd03252 1 ITFEHVRFRY-KPDG-PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD---LALADPAWLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHfNLLSSRTVYENVALPLELAGVKRAeIEATVLP-----LLEL-VGLTAQKDRYPAQISGGQKQRVGIARAL 155
Cdd:cd03252 76 RQVGVVLQE-NVLFNRSIRDNIALADPGMSMERV-IEAAKLAgahdfISELpEGYDTIVGEQGAGLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKNA-DRIIVMEKGRIVEQG 218
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-241 |
2.46e-42 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 147.50 E-value: 2.46e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR------DLTALSAADLRaarRDIGMIFQHFNLL 94
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKvlyfgkDIFQIDAIKLR---KEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SSRTVYENVALPLELAGVK-RAEIEATVLPLLELVGLTAQ-KDRY--PA-QISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKeKREIKKIVEECLRKVGLWKEvYDRLnsPAsQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 170 ALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-229 |
3.27e-42 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 147.23 E-value: 3.27e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLrAA 80
Cdd:PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-AR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRdiGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA---- 156
Cdd:PRK13548 77 RR--AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwe 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 157 --SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13548 155 pdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
11-231 |
3.33e-42 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 147.97 E-value: 3.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 11 FAGPqgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA-ADLRAARRDIGMIFQ 89
Cdd:PRK13649 18 FEGR-----ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnKDIKQIRKKVGLVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 90 hF--NLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPKVLLSDE 166
Cdd:PRK13649 93 -FpeSQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 167 ATSALDPETTRAILDLLRRINrELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK13649 172 PTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-224 |
3.59e-42 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 154.15 E-value: 3.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:COG4987 334 LELEDVSFRYPGAGRPV--LDGLSLTLPPGERVAIVGPSGSGKSTLL---ALLLRfldPQSGSITLGGVDLRDLDEDDLR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AArrdIGMIFQHFNLLSSrTVYENVALPLELAGvkraeiEATVLPLLELVGLTAQKDRYP-----------AQISGGQKQ 147
Cdd:COG4987 409 RR---IAVVPQRPHLFDT-TLRENLRLARPDAT------DEELWAALERVGLGDWLAALPdgldtwlgeggRRLSGGERR 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 148 RVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGP 224
Cdd:COG4987 479 RLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLERM-DRILVLEDGRIVEQGT 552
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
23-223 |
3.75e-42 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 145.71 E-value: 3.75e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraarRDIGMIFQHFNLLSSRTVYEN 102
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD-----RPVSMLFQENNLFAHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 103 VALP----LELAGVKRAEIEAtvlpLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:cd03298 91 VGLGlspgLKLTAEDRQAIEV----ALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 640674200 179 ILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03298 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-262 |
6.26e-42 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 147.06 E-value: 6.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaaDLRAA 80
Cdd:PRK13644 1 MIRLENVSYSY--PDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS--KLQGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNL-LSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13644 76 RKLVGIVFQNPETqFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIkQVCDRVAVLDAGRVVETGPVIEVFmqphhevtra 239
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL---------- 223
|
250 260
....*....|....*....|....*.
gi 640674200 240 liGDVIAQEL---PPALkARVAERLK 262
Cdd:PRK13644 224 --SDVSLQTLgltPPSL-IELAENLK 246
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-202 |
9.34e-42 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 146.00 E-value: 9.34e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlraa 80
Cdd:PRK11248 1 MLQISHLYADYGGK----PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rrDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK11248 71 --ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQ 148
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQME 202
Cdd:PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-244 |
1.35e-41 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 145.64 E-value: 1.35e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLrAA 80
Cdd:COG4559 1 MLEAENLSVRLGG----RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWEL-AR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRdiGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA---- 156
Cdd:COG4559 76 RR--AVLPQHSSLAFPFTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwe 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 157 ---SKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFmqph 233
Cdd:COG4559 154 pvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVL---- 228
|
250
....*....|.
gi 640674200 234 hevTRALIGDV 244
Cdd:COG4559 229 ---TDELLERV 236
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-223 |
1.92e-41 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 144.68 E-value: 1.92e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLTR---PSEGNVVVDGRDLTALSAADLr 78
Cdd:cd03251 1 VEFKNVTFRYPGDGPPV--LRDISLDIPAGETVALVGPSGSGKSTLV---NLIPRfydVDSGRILIDGHDVRDYTLASL- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aaRRDIGMIFQHFNLLSSrTVYENVALPLElaGVKRAEIEATvlplLELVGLTAQKDRYP-----------AQISGGQKQ 147
Cdd:cd03251 75 --RRQIGLVSQDVFLFND-TVAENIAYGRP--GATREEVEEA----ARAANAHEFIMELPegydtvigergVKLSGGQRQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 148 RVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-DRIVVLEDGKIVERG 218
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-228 |
2.19e-41 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 151.11 E-value: 2.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAG-PQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVV----DGRDLTALSAA 75
Cdd:TIGR03269 279 IIKVRNVSKRYISvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKPGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQHFNLLSSRTVYENVA------LPLELAgVKRAEIeatvlpLLELVGLTAQK-----DRYPAQISGG 144
Cdd:TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTeaigleLPDELA-RMKAVI------TLKMVGFDEEKaeeilDKYPDELSEG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 145 QKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
|
....
gi 640674200 225 VIEV 228
Cdd:TIGR03269 512 PEEI 515
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
3-240 |
3.32e-41 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 143.82 E-value: 3.32e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraARR 82
Cdd:TIGR03410 2 EVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER--ARA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELvgLTAQKDRYPAQISGGQKQRVGIARALASKPKVL 162
Cdd:TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 163 LSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfmqPHHEVTRAL 240
Cdd:TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL---DEDKVRRYL 228
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-223 |
4.46e-41 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 143.11 E-value: 4.46e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraaR 81
Cdd:cd03245 3 IEFRNVS--FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL---R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENVALPLELAGVKRaeieatVLPLLELVGLTAQKDRYP-----------AQISGGQKQRVG 150
Cdd:cd03245 78 RNIGYVPQDVTLFYG-TLRDNITLGAPLADDER------ILRAAELAGVTDFVNKHPngldlqigergRGLSGGQRQAVA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIkQVCDRVAVLDAGRVVETG 223
Cdd:cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-246 |
4.57e-41 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 144.30 E-value: 4.57e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGwveaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR-----DLTALSAA 75
Cdd:PRK11701 6 LLSVRGLTKLYGPRKG----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRA-ARRDIGMIFQHF--NLLSSRTVYENVALPLELAGVKR-AEIEATVLPLLELVGLTAQK-DRYPAQISGGQKQRVG 150
Cdd:PRK11701 82 ERRRlLRTEWGFVHQHPrdGLRMQVSAGGNIGERLMAVGARHyGDIRATAGDWLERVEIDAARiDDLPTTFSGGMQQRLQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241
|
250
....*....|....*.
gi 640674200 231 QPHHEVTRALIGDVIA 246
Cdd:PRK11701 242 DPQHPYTQLLVSSVLQ 257
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-241 |
6.05e-41 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 146.10 E-value: 6.05e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLT----RPSEGNVVVDGRDLTALSAad 76
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnwRVTADRMRFDDIDLLRLSP-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 lRAARRDIG----MIFQHFNllSSRTVYENVALPL---------------ELAGVKRAEIEatvlpLLELVGLTAQKD-- 135
Cdd:PRK15093 81 -RERRKLVGhnvsMIFQEPQ--SCLDPSERVGRQLmqnipgwtykgrwwqRFGWRKRRAIE-----LLHRVGIKDHKDam 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 136 -RYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVL 214
Cdd:PRK15093 153 rSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
250 260
....*....|....*....|....*..
gi 640674200 215 DAGRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQALI 259
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-219 |
7.90e-41 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 140.81 E-value: 7.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAAR 81
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW---DPNELG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENValplelagvkraeieatvlpllelvgltaqkdrypaqISGGQKQRVGIARALASKPKV 161
Cdd:cd03246 76 DHVGYLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQvCDRVAVLDAGRV 219
Cdd:cd03246 118 LVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-224 |
8.42e-41 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 142.25 E-value: 8.42e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAAR 81
Cdd:cd03244 3 IEFKNVSLRYRPNLPPV--LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI---GLHDLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENVAlPL------ELAGV-KRAEIEATVLPLLElvGLTAQKDRYPAQISGGQKQRVGIARA 154
Cdd:cd03244 78 SRISIIPQDPVLFSG-TIRSNLD-PFgeysdeELWQAlERVGLKEFVESLPG--GLDTVVEEGGENLSVGQRQLLCLARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRriNRELGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-224 |
8.89e-41 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 151.03 E-value: 8.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRD-IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK10535 84 RREhFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGP 224
Cdd:PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQA-ERVIEIRDGEIVRNPP 226
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-232 |
9.77e-41 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 146.14 E-value: 9.77e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraa 80
Cdd:PRK11650 3 GLKLQAVRKSYDGK---TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK11650 76 -RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 161 VLLSDEATSALDPEtTRAILDL-LRRINRELGLTIVLITH-QMEVIkQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK11650 155 VFLFDEPLSNLDAK-LRVQMRLeIQRLHRRLKTTSLYVTHdQVEAM-TLADRVVVMNGGVAEQIGTPVEVYEKP 226
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
2-224 |
2.32e-40 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 150.11 E-value: 2.32e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFA--GPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRA 79
Cdd:TIGR03797 452 IEVDRVTFRYRpdGPL----ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL---DVQA 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQHFNLLSSrTVYENVA----LPLELAgvkraeIEAtvlplLELVGLTAQKDRYP-----------AQISGG 144
Cdd:TIGR03797 525 VRRQLGVVLQNGRLMSG-SIFENIAggapLTLDEA------WEA-----ARMAGLAEDIRAMPmgmhtviseggGTLSGG 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 145 QKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINrelgLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK----VTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGT 667
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-224 |
2.33e-40 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 149.10 E-value: 2.33e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:TIGR02203 331 VEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLV---NLIPRfyePDSGQILLDGHDLADYTLASLR 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarRDIGMIFQHFNLLSSrTVYENVALPlELAGVKRAEIEATVLP--LLELV-----GLTAQKDRYPAQISGGQKQRVGI 151
Cdd:TIGR02203 406 ---RQVALVSQDVVLFND-TIANNIAYG-RTEQADRAEIERALAAayAQDFVdklplGLDTPIGENGVLLSGGQRQRLAI 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGP 224
Cdd:TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKA-DRIVVMDDGRIVERGT 550
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-218 |
3.37e-40 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 141.03 E-value: 3.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFA-GPQGWVE--ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR----DLTALS 73
Cdd:COG4778 4 LLEVENLSKTFTlHLQGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 AADLRAARRD-IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLtaqKDR----YPAQISGGQKQR 148
Cdd:COG4778 84 PREILALRRRtIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNL---PERlwdlPPATFSGGEQQR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:COG4778 161 VNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
19-241 |
4.08e-40 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 141.84 E-value: 4.08e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLT--RPS---EGNVVVDGRDLTAlSAADLRAARRDIGMIFQHFNL 93
Cdd:PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlNPEvtiTGSIVYNGHNIYS-PRTDTVDLRKEIGMVFQQPNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 94 LSSrTVYENVALPLELAGVKRAEI--EATVLPLLELVGLTAQKDRYPAQ---ISGGQKQRVGIARALASKPKVLLSDEAT 168
Cdd:PRK14239 98 FPM-SIYENVVYGLRLKGIKDKQVldEAVEKSLKGASIWDEVKDRLHDSalgLSGGQQQRVCIARVLATSPKIILLDEPT 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 169 SALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:PRK14239 177 SALDPISAGKIEETLLGLKDD--YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYI 247
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1-305 |
1.61e-39 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 142.71 E-value: 1.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIrNLSQRFAgpqgwveALH-DVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLT-ALSAADLR 78
Cdd:PRK11144 1 MLEL-NFKQQLG-------DLClTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFdAEKGICLP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQHFNLLSSRTVYENvaLPLELAGVKRAEIEATVlpllELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:PRK11144 73 PEKRRIGYVFQDARLFPHYKVRGN--LRYGMAKSMVAQFDKIV----ALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFmqpHHEVTR 238
Cdd:PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW---ASSAMR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 239 ALIGdviAQELPPALKARVAE--------RLKSGRGHL------------LRLAFTGSGVD---QPILSETIRryeldfN 295
Cdd:PRK11144 224 PWLP---KEEQSSILKVTVLEhhphyamtALALGDQHLwvnkldaplgtaLRIRIQASDVSlvlQPPQQSSIR------N 294
|
330
....*....|
gi 640674200 296 ILHGQIDEIQ 305
Cdd:PRK11144 295 ILRAKVVEIY 304
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-241 |
2.06e-39 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 139.83 E-value: 2.06e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPqgwveALHDVNLTIPRGEVFGIIGRSGAGKS-TLVRTINLL---TRPSEGNVVVDGrdlTALSAADL 77
Cdd:PRK10418 5 IELRNIALQAAQP-----LVHGVSLTLQRGRVLALVGGSGSGKSlTCAAALGILpagVRQTAGRVLLDG---KPVAPCAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAarRDIGMIFQH----FNLLssRTVYENVALPLELAGVKRAEieATVLPLLELVGLTAQK---DRYPAQISGGQKQRVG 150
Cdd:PRK10418 77 RG--RKIATIMQNprsaFNPL--HTMHTHARETCLALGKPADD--ATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMM 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
250
....*....|.
gi 640674200 231 QPHHEVTRALI 241
Cdd:PRK10418 231 APKHAVTRSLV 241
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-228 |
2.31e-39 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 139.45 E-value: 2.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRF------------------AGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNV 62
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 63 VVDGRdLTALsaadLraarrDIGMIFQhfnllSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKD----RYp 138
Cdd:COG1134 84 EVNGR-VSAL----L-----ELGAGFH-----PELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDqpvkTY- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 139 aqiSGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:COG1134 148 ---SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRAIWLEKGR 223
|
250
....*....|
gi 640674200 219 VVETGPVIEV 228
Cdd:COG1134 224 LVMDGDPEEV 233
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
7.94e-39 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 138.73 E-value: 7.94e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltALSAADLRAA 80
Cdd:PRK13648 7 IIVFKNVSFQYQSDASF--TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ---AITDDNFEKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13648 82 RKHIGIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM-EVIKQvcDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLsEAMEA--DHVIVMNKGTVYKEGTPTEIF 230
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-242 |
9.50e-39 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 138.74 E-value: 9.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRfagpQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:PRK11831 7 LVDMRGVSFT----RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPL-ELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLrEHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVTRA 239
Cdd:PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQF 242
|
...
gi 640674200 240 LIG 242
Cdd:PRK11831 243 LDG 245
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-227 |
1.00e-38 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 137.36 E-value: 1.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRtinLLTR---PSEGNVVVDGRDLTALsaaDLR 78
Cdd:cd03253 1 IEFENVT--FAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILR---LLFRfydVSSGSILIDGQDIREV---TLD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQH---FNllssRTVYENV------ALPLEL-AGVKRAEIEATVLPLLE----LVGLTAQKdrypaqISGG 144
Cdd:cd03253 72 SLRRAIGVVPQDtvlFN----DTIGYNIrygrpdATDEEViEAAKAAQIHDKIMRFPDgydtIVGERGLK------LSGG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 145 QKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGP 224
Cdd:cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218
|
...
gi 640674200 225 VIE 227
Cdd:cd03253 219 HEE 221
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-200 |
1.13e-38 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 136.45 E-value: 1.13e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsAADLRAA 80
Cdd:COG4133 2 MLEAENLSCRR----GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPI----RDAREDY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEieATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:COG4133 74 RRRLAYLGHADGLKPELTVRENLRFWAALYGLRADR--EAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAP 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRiNRELGLTIVLITHQ 200
Cdd:COG4133 152 LWLLDEPFTALDAAGVALLAELIAA-HLARGGAVLLTTHQ 190
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-223 |
1.37e-38 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 137.29 E-value: 1.37e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQ-GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTlvrTINLLTR---PSEGNVVVDGRDLTALsaaDL 77
Cdd:cd03249 1 IEFKNVS--FRYPSrPDVPILKGLSLTIPPGKTVALVGSSGCGKST---VVSLLERfydPTSGEILLDGVDIRDL---NL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAARRDIGMIFQHFNLLSsRTVYENVAL-------PLELAGVKRAEIEATVLPLLE----LVGltaqkDRYpAQISGGQK 146
Cdd:cd03249 73 RWLRSQIGLVSQEPVLFD-GTIAENIRYgkpdatdEEVEEAAKKANIHDFIMSLPDgydtLVG-----ERG-SQLSGGQK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 147 QRVGIARALASKPKVLLSDEATSALDPETTRAI---LDLLRRinrelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETG 223
Cdd:cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVqeaLDRAMK-----GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQG 219
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-256 |
2.32e-38 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 142.92 E-value: 2.32e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKS-TLVRTINLLTRPS----EGNVVVDGRDLTALSAA 75
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRD-IGMIFQH----FNLLSS--RTVYENVALPlelAGVKRAEIEATVLPLLELVGLTAQKDR---YPAQISGGQ 145
Cdd:PRK15134 85 TLRGVRGNkIAMIFQEpmvsLNPLHTleKQLYEVLSLH---RGMRREAARGEILNCLDRVGIRQAAKRltdYPHQLSGGE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 146 KQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPV 225
Cdd:PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241
|
250 260 270
....*....|....*....|....*....|....*...
gi 640674200 226 IEVFMQPHHEVTRALI-----GDV--IAQELPPALKAR 256
Cdd:PRK15134 242 ATLFSAPTHPYTQKLLnsepsGDPvpLPEPASPLLDVE 279
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
23-242 |
3.01e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 139.20 E-value: 3.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVdgrdLTALSAADLRAARRDIGMIFQHFNLLSSRTVYEN 102
Cdd:PRK13536 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV----LGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 103 VALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDL 182
Cdd:PRK13536 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 183 LRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG------------PVIEVFMQPHHEVTrALIG 242
Cdd:PRK13536 215 LRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGrphalidehigcQVIEIYGGDPHELS-SLVK 284
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-244 |
3.12e-38 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 143.84 E-value: 3.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR----------DLT 70
Cdd:PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMllrrrsrqviELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 71 ALSAADLRAAR-RDIGMIFQH--FNLLSSRTVYENVALPLEL-AGVKRAEIEATVLPLLELVGLTAQK---DRYPAQISG 143
Cdd:PRK10261 92 EQSAAQMRHVRgADMAMIFQEpmTSLNPVFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQtilSRYPHQLSG 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 144 GQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251
|
250 260
....*....|....*....|.
gi 640674200 224 PVIEVFMQPHHEVTRALIGDV 244
Cdd:PRK10261 252 SVEQIFHAPQHPYTRALLAAV 272
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-241 |
3.42e-38 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 137.23 E-value: 3.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGW-----VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaA 75
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWfrrqtVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF---G 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQH-FNLLSSRT-VYENVALPLEL-AGVKRAEIEATVLPLLELVGLTA-QKDRYPAQISGGQKQRVGI 151
Cdd:PRK15112 81 DYSYRSQRIRMIFQDpSTSLNPRQrISQILDFPLRLnTDLEPEQREKQIIETLRQVGLLPdHASYYPHMLAPGQKQRLGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
250
....*....|
gi 640674200 232 PHHEVTRALI 241
Cdd:PRK15112 241 PLHELTKRLI 250
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-245 |
3.87e-38 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 142.25 E-value: 3.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLT-----RPSEGNVVV------------ 64
Cdd:TIGR03269 1 IEVKNLTKKFDG----KEVLKNISFTIEEGEVLGILGRSGAGKSVL---MHVLRgmdqyEPTSGRIIYhvalcekcgyve 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 65 ----DGR--------------DLTALSAADLRAARRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLL 125
Cdd:TIGR03269 74 rpskVGEpcpvcggtlepeevDFWNLSDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 126 ELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIK 205
Cdd:TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 640674200 206 QVCDRVAVLDAGRVVETG---PVIEVFMQPHHEVTRA---LIGDVI 245
Cdd:TIGR03269 234 DLSDKAIWLENGEIKEEGtpdEVVAVFMEGVSEVEKEcevEVGEPI 279
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-221 |
4.94e-38 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 135.29 E-value: 4.94e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA---ADL 77
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEearAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAarRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALAS 157
Cdd:PRK10584 86 RA--KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGRVVE 221
Cdd:PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-232 |
7.18e-38 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 135.60 E-value: 7.18e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraA 80
Cdd:COG4604 1 MIEIKNVSKRYGG----KVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSREL--A 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRdIGMIFQHfNLLSSR-TVYENVA----------LPLElagvKRAEIEATvlplLELVGLTAQKDRYPAQISGGQKQRV 149
Cdd:COG4604 75 KR-LAILRQE-NHINSRlTVRELVAfgrfpyskgrLTAE----DREIIDEA----IAYLDLEDLADRYLDELSGGQRQRA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVf 229
Cdd:COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI- 223
|
...
gi 640674200 230 MQP 232
Cdd:COG4604 224 ITP 226
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-231 |
9.09e-38 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 134.66 E-value: 9.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLTR---PSEGNVVVDGRDLTALSAADLr 78
Cdd:cd03254 3 IEFENVNFSY-DEKKPV--LKDINFSIKPGETVAIVGPTGAGKTTL---INLLMRfydPQKGQILIDGIDIRDISRKSL- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aaRRDIGMIFQHfNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELV-----GLTAQKDRYPAQISGGQKQRVGIAR 153
Cdd:cd03254 76 --RSMIGVVLQD-TFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFImklpnGYDTVLGENGGNLSQGERQLLAIAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA-DKILVLDDGKIIEEGTHDELLAK 227
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-223 |
1.17e-37 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 135.53 E-value: 1.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTIN-LLT--RPSEGNVVVDGRDLTALS--AA 75
Cdd:PRK09984 4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSgLITgdKSAGSHIELLGRTVQREGrlAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQHFNLLSSRTVYENVAL------PLELAGVK--RAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQ 147
Cdd:PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIgalgstPFWRTCFSwfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 148 RVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
4-278 |
1.58e-37 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 137.85 E-value: 1.58e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaaDLRAARRD 83
Cdd:PRK11000 6 LRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN-----DVPPAERG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLL 163
Cdd:PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 164 SDEATSALDpettrAILDLLRRI-----NRELGLTIVLITH-QMEVIkQVCDRVAVLDAGRVVETGPVIEVFMQPHHEVT 237
Cdd:PRK11000 157 LDEPLSNLD-----AALRVQMRIeisrlHKRLGRTMIYVTHdQVEAM-TLADKIVVLDAGRVAQVGKPLELYHYPANRFV 230
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 640674200 238 RALIGDVIAQELPPALKARVAERLKS--GRGHLLRLAFTGSGV 278
Cdd:PRK11000 231 AGFIGSPKMNFLPVKVTATAIEQVQVelPNRQQVWLPVEGRGV 273
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-241 |
1.67e-37 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 136.80 E-value: 1.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKS----TLVRTINLLTRPSEGNVVVDGRDLTALSAAD 76
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRA-ARRDIGMIFQH--FNLLSSRTVYENV--ALPLELAGVKRAEIEATVlPLLELVGLTAQKDR---YPAQISGGQKQR 148
Cdd:PRK11022 83 RRNlVGAEVAMIFQDpmTSLNPCYTVGFQImeAIKVHQGGNKKTRRQRAI-DLLNQVGIPDPASRldvYPHQLSGGMSQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 149 VGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
250
....*....|...
gi 640674200 229 FMQPHHEVTRALI 241
Cdd:PRK11022 242 FRAPRHPYTQALL 254
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-241 |
4.17e-37 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 139.46 E-value: 4.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQGWV-------EALHDVNLTIPRGEVFGIIGRSGAGKST----LVRTINlltrpSEGNVVVDGRDL 69
Cdd:PRK15134 275 LLDVEQLQVAFPIRKGILkrtvdhnVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 70 TALSAADLRAARRDIGMIFQHFN-LLSSR-TVYENVALPLEL--AGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGG 144
Cdd:PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNsSLNPRlNVLQIIEEGLRVhqPTLSAAQREQQVIAVMEEVGLDPEtRHRYPAEFSGG 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 145 QKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
|
250
....*....|....*..
gi 640674200 225 VIEVFMQPHHEVTRALI 241
Cdd:PRK15134 510 CERVFAAPQQEYTRQLL 526
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
21-223 |
5.21e-37 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 140.34 E-value: 5.21e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRtinLLTR---PSEGNVVVDGRDLTALSAADLRAArrdIGMIFQH---FNll 94
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLAR---LLFRfydVTSGRILIDGQDIRDVTQASLRAA---IGIVPQDtvlFN-- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 ssRTVYENVALPLelAGVKRAEIEATV-----------LPllelvgltaqkDRYPAQI-------SGGQKQRVGIARALA 156
Cdd:COG5265 446 --DTIAYNIAYGR--PDASEEEVEAAAraaqihdfiesLP-----------DGYDTRVgerglklSGGEKQRVAIARTLL 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIkQVCDRVAVLDAGRVVETG 223
Cdd:COG5265 511 KNPPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTI-VDADEILVLEAGRIVERG 574
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-233 |
5.38e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 135.36 E-value: 5.38e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQ-GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNV----VVDGRDLTALSAA 75
Cdd:PRK13631 21 ILRVKNLYCVFDEKQeNELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 ---------DLRAARRDIGMIFQ--HFNLLSSrTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQIS 142
Cdd:PRK13631 101 tnpyskkikNFKELRRRVSMVFQfpEYQLFKD-TIEKDIMFgPVAL-GVKKSEAKKLAKFYLNKMGLDDSyLERSPFGLS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 143 GGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVET 222
Cdd:PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257
|
250
....*....|.
gi 640674200 223 GPVIEVFMQPH 233
Cdd:PRK13631 258 GTPYEIFTDQH 268
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-220 |
6.60e-37 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 133.67 E-value: 6.60e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRF-AGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlRA 79
Cdd:COG1101 1 MLELKNLSKTFnPGTVNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYK-RA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 arRDIGMIFQhfNLL----SSRTVYENVAL--------PLELaGVKRAEIEA--TVLPLLELvGLtaqKDRYPAQI---S 142
Cdd:COG1101 80 --KYIGRVFQ--DPMmgtaPSMTIEENLALayrrgkrrGLRR-GLTKKRRELfrELLATLGL-GL---ENRLDTKVgllS 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 143 GGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:COG1101 151 GGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-311 |
7.34e-37 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 134.83 E-value: 7.34e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLS------QRFAGPQGW-----------VEALHDVNLTIPRGEVFGIIGRSGAGKSTlvrTINLLT---RPSEG 60
Cdd:COG4586 1 IIEVENLSktyrvyEKEPGLKGAlkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKST---TIKMLTgilVPTSG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 61 NVVVDGRDltalSAADLRAARRDIGMIFQH-------------FNLLssRTVYEnvalplelagVKRAEIEATVLPLLEL 127
Cdd:COG4586 78 EVRVLGYV----PFKRRKEFARRIGVVFGQrsqlwwdlpaidsFRLL--KAIYR----------IPDAEYKKRLDELVEL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 128 VGLTAQKDRyPA-QISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQ 206
Cdd:COG4586 142 LDLGELLDT-PVrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 207 VCDRVAVLDAGRVVETGPV---IEVFMqPHHEVTRALIGDVIAQELPPALKarvaerLKSGRGHLLRLAFTGSGVDQPIL 283
Cdd:COG4586 221 LCDRVIVIDHGRIIYDGSLeelKERFG-PYKTIVLELAEPVPPLELPRGGE------VIEREGNRVRLEVDPRESLAEVL 293
|
330 340
....*....|....*....|....*....
gi 640674200 284 SETIRRYEL-DFNILHGQIDEIQGQAFGS 311
Cdd:COG4586 294 ARLLARYPVrDLTIEEPPIEEVIRRIYKE 322
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
25-224 |
7.95e-37 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 132.40 E-value: 7.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 25 NLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlraaRRDIGMIFQHFNLLSSRTVYENVA 104
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-----RRPVSMLFQENNLFSHLTVAQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 105 L---P-LELAGVKRAEIEATVlpllELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAIL 180
Cdd:PRK10771 94 LglnPgLKLNAAQREKLHAIA----RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 640674200 181 DLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:PRK10771 170 TLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-219 |
4.94e-36 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 130.95 E-value: 4.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGnvvvdgrDLTALSAAdLRAARRD 83
Cdd:PRK11247 15 LNAVSKRYGER----TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-------ELLAGTAP-LAEARED 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVALPLelagvkRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLL 163
Cdd:PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGL------KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 164 SDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
2-219 |
1.14e-35 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 129.06 E-value: 1.14e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaadlRAAR 81
Cdd:TIGR03740 1 LETKNLSKRF-GKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT-------RKDL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEatvlPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:TIGR03740 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID----EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-229 |
1.19e-35 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 129.82 E-value: 1.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVV-VDGRDLTALSAADLRa 79
Cdd:COG1119 3 LLELRNVTVRRGG----KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrLFGERRGGEDVWELR- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 arRDIGMI--FQHFNLLSSRTVYENVA--------LPLELAGVKRAEIEAtvlpLLELVGLTAQKDRYPAQISGGQKQRV 149
Cdd:COG1119 78 --KRIGLVspALQLRFPRDETVLDVVLsgffdsigLYREPTDEQRERARE----LLELLGLAHLADRPFGTLSQGEQRRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:COG1119 152 LIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVL 231
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-223 |
1.85e-35 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 128.81 E-value: 1.85e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlRAAR 81
Cdd:cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH--KRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRI-NRELGltiVLIT-HQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILkDRGIG---VLITdHNVRETLSITDRAYIIYEGKVLAEG 215
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-223 |
4.69e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 129.09 E-value: 4.69e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltALSAADLRAAR 81
Cdd:PRK13647 5 IEVEDLHFRY--KDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR---EVNAENEKWVR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQH-FNLLSSRTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13647 79 SKVGLVFQDpDDQVFSSTVWDDVAFgPVNM-GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-229 |
5.78e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 129.06 E-value: 5.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAgPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaa 80
Cdd:PRK13642 4 ILEVENLVFKYE-KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rRDIGMIFQH-FNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13642 81 -RKIGMVFQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELF 228
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
19-231 |
6.40e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 128.74 E-value: 6.40e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA-ADLRAARRDIGMIFQhfnLLSSR 97
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKdKYIRPVRKRIGMVFQ---FPESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYENVALPLELA----GVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALD 172
Cdd:PRK13646 98 LFEDTVEREIIFGpknfKMNLDEVKNYAHRLLMDLGFSRDvMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 173 PETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK13646 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
20-241 |
6.77e-35 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 128.36 E-value: 6.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTR--PS---EGNVVVDGRDLTAlSAADLRAARRDIGMIFQHFNLL 94
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDliPGfrvEGKVTFHGKNLYA-PDVDPVEVRRRIGMVFQKPNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SsRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQ---ISGGQKQRVGIARALASKPKVLLSDEATSAL 171
Cdd:PRK14243 104 P-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSglsLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 172 DPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDA---------GRVVETGPVIEVFMQPHHEVTRALI 241
Cdd:PRK14243 183 DPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFNVeltegggryGYLVEFDRTEKIFNSPQQQATRDYV 259
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-228 |
1.27e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 128.67 E-value: 1.27e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWV-EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADL--- 77
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTElKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEkek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 ------------------RAARRDIGMIFQ--HFNLLSSrTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQK-D 135
Cdd:PRK13651 83 vleklviqktrfkkikkiKEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFgPVSM-GVSKEEAKKRAAKYIELVGLDESYlQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 136 RYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFK 239
|
250
....*....|...
gi 640674200 216 AGRVVETGPVIEV 228
Cdd:PRK13651 240 DGKIIKDGDTYDI 252
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-231 |
3.12e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 127.16 E-value: 3.12e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSA-ADLRAARRDIGMIFQH-FNLLSSR 97
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKqKEIKPVRKKVGVVFQFpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETT 176
Cdd:PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 177 RAILDLLRRINrELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK13643 181 IEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-243 |
3.22e-34 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 126.26 E-value: 3.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaaDLRAA 80
Cdd:PRK11300 5 LLSVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP--GHQIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYEN--VALPLEL-----------AGVKRAEIEATVLPL--LELVGLTAQKDRYPAQISGGQ 145
Cdd:PRK11300 79 RMGVVRTFQHVRLFREMTVIENllVAQHQQLktglfsgllktPAFRRAESEALDRAAtwLERVGLLEHANRQAGNLAYGQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 146 KQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPV 225
Cdd:PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
250
....*....|....*...
gi 640674200 226 IEVFMQPhhEVTRALIGD 243
Cdd:PRK11300 239 EEIRNNP--DVIKAYLGE 254
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-228 |
3.78e-34 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 125.53 E-value: 3.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAaDLRAa 80
Cdd:COG1137 3 TLEAENLVKSYGKRT----VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPM-HKRA- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGM------IFQhfNLlssrTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARA 154
Cdd:COG1137 77 RLGIGYlpqeasIFR--KL----TVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRI-NRELGltiVLIT-HQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:COG1137 151 LATNPKFILLDEPFAGVDPIAVADIQKIIRHLkERGIG---VLITdHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-244 |
1.14e-33 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 125.59 E-value: 1.14e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 6 NLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEG-----NVVVDGRDLtaLSAADLRAA 80
Cdd:PRK14271 26 NLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSI--FNYRDVLEF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSsRTVYENValpleLAGVK------RAEIEATVLPLLELVGL-TAQKDRY---PAQISGGQKQRVG 150
Cdd:PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNV-----LAGVRahklvpRKEFRGVAQARLTEVGLwDAVKDRLsdsPFRLSGGQQQLLC 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFM 230
Cdd:PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
250
....*....|....*...
gi 640674200 231 QPHH-EVTR---ALIGDV 244
Cdd:PRK14271 252 SPKHaETARyvaGLSGDV 269
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-223 |
1.75e-33 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 123.41 E-value: 1.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 10 RFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDltalsaadlrAARRDIGMIFQ 89
Cdd:cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV----------SSLLGLGGGFN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 90 hfnllSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:cd03220 97 -----PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 640674200 170 ALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03220 172 VGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-223 |
4.74e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 122.44 E-value: 4.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLS---QRFAGPQGW--------------VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVV 64
Cdd:cd03267 1 IEVSNLSksyRVYSKEPGLigslkslfkrkyreVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 65 DGRdltaLSAADLRAARRDIGMIF-QHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISG 143
Cdd:cd03267 81 AGL----VPWKRRKKFLRRIGVVFgQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 144 GQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:cd03267 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
19-229 |
6.29e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 123.58 E-value: 6.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTA--LSAADLRAARRDIGMIFQ--HFNLL 94
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPAnlKKIKEVKRLRKEIGLVFQfpEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SSrTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALD 172
Cdd:PRK13645 105 QE-TIEKDIAFgPVNL-GENKQEAYKKVPELLKLVQLPEDyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 173 PETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13645 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-242 |
8.34e-33 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 127.59 E-value: 8.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAA 80
Cdd:PRK09700 5 YISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL--AA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENV---ALPL-ELAGV-----KRAEIEATVlpLLELVGLTAQKDRYPAQISGGQKQRVGI 151
Cdd:PRK09700 79 QLGIGIIYQELSVIDELTVLENLyigRHLTkKVCGVniidwREMRVRAAM--MLLRVGLKVDLDEKVANLSISHKQMLEI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
250
....*....|.
gi 640674200 232 phhEVTRALIG 242
Cdd:PRK09700 236 ---DIVRLMVG 243
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-223 |
2.33e-32 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 127.06 E-value: 2.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:PRK11176 342 IEFRNVT--FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA---NLLTRfydIDEGEILLDGHDLRDYTLASLR 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarRDIGMIFQHFNLLSSrTVYENVALPLElAGVKRAEIE--ATVLPLLELV-----GLTAQKDRYPAQISGGQKQRVGI 151
Cdd:PRK11176 417 ---NQVALVSQNVHLFND-TIANNIAYART-EQYSREQIEeaARMAYAMDFInkmdnGLDTVIGENGVLLSGGQRQRIAI 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAI---LDLLRRiNRelglTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:PRK11176 492 ARALLRDSPILILDEATSALDTESERAIqaaLDELQK-NR----TSLVIAHRLSTIEKA-DEILVVEDGEIVERG 560
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
2-234 |
4.41e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 121.47 E-value: 4.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAgPQGWVEA--LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTA-LSAADLR 78
Cdd:PRK13641 3 IKFENVDYIYS-PGTPMEKkgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPeTGNKNLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRDIGMIFQhF--NLLSSRTVYENVAL-PLELaGVKRAEIEATVLPLLELVGLTAQ-KDRYPAQISGGQKQRVGIARA 154
Cdd:PRK13641 82 KLRKKVSLVFQ-FpeAQLFENTVLKDVEFgPKNF-GFSEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF----- 229
Cdd:PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFsdkew 238
|
....*
gi 640674200 230 MQPHH 234
Cdd:PRK13641 239 LKKHY 243
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-225 |
1.17e-31 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 117.63 E-value: 1.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI--NLLTRPSEGNVVVDGRDLTALSaADLRa 79
Cdd:cd03217 1 LEIKDLHVSVGG----KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImgHPKYEVTEGEILFKGEDITDLP-PEER- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQHfnllssrtvyenvalPLELAGVKRAEieatvlpLLELVGLTaqkdrypaqISGGQKQRVGIARALASKP 159
Cdd:cd03217 75 ARLGIFLAFQY---------------PPEIPGVKNAD-------FLRYVNEG---------FSGGEKKRNEILQLLLLEP 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQV-CDRVAVLDAGRVVETGPV 225
Cdd:cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-219 |
1.25e-31 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 117.15 E-value: 1.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRfagpqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA-- 80
Cdd:cd03215 6 EVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAgi 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 ------RRDIGmifqhfnLLSSRTVYENVALPLELagvkraeieatvlpllelvgltaqkdrypaqiSGGQKQRVGIARA 154
Cdd:cd03215 78 ayvpedRKREG-------LVLDLSVAENIALSSLL--------------------------------SGGNQQKVVLARW 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-245 |
1.91e-31 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 120.30 E-value: 1.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGWVEALhdvNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadlRAAR 81
Cdd:PRK13537 8 IDFRNVEKRY-GDKLVVDGL---SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA----RHAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKV 161
Cdd:PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGpvievfmQPHHEVTRALI 241
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG-------APHALIESEIG 231
|
....
gi 640674200 242 GDVI 245
Cdd:PRK13537 232 CDVI 235
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-223 |
3.70e-31 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 123.40 E-value: 3.70e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:PRK11160 339 LTLNNVS--FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL---LQLLTRawdPQQGEILLNGQPIADYSEAALR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AArrdIGMIFQHFNLLSSrTVYENVALPLELAGvkrAEIEATVLPLLELVGLTAQKDRYPA-------QISGGQKQRVGI 151
Cdd:PRK11160 414 QA---ISVVSQRVHLFSA-TLRDNLLLAAPNAS---DEALIEVLQQVGLEKLLEDDKGLNAwlgeggrQLSGGEQRRLGI 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQG 555
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-238 |
5.46e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 117.83 E-value: 5.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGWVEAlhdVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRpSEGNVVVDGR-DLTALSAADLRA- 79
Cdd:PRK14258 8 IKVNNLSFYY-DTQKILEG---VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRvEFFNQNIYERRVn 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ---ARRDIGMIFQHFNLLSsRTVYENVALPLELAGVK-RAEIEATVLPLLELVGL----TAQKDRYPAQISGGQKQRVGI 151
Cdd:PRK14258 83 lnrLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRpKLEIDDIVESALKDADLwdeiKHKIHKSALDLSGGQQQRLCI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDA-----GRVVETGPVI 226
Cdd:PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTK 241
|
250
....*....|..
gi 640674200 227 EVFMQPHHEVTR 238
Cdd:PRK14258 242 KIFNSPHDSRTR 253
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
21-233 |
1.31e-30 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 121.78 E-value: 1.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaarRDIGMIFQHFNLLSSrTVY 100
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELG---RHIGYLPQDVELFDG-TIA 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALpleLAGVKRAEIEATVlpllELVGLTAQKDRYP-----------AQISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:COG4618 424 ENIAR---FGDADPEKVVAAA----KLAGVHEMILRLPdgydtrigeggARLSGGQRQRIGLARALYGDPRLVVLDEPNS 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 170 ALDPETTRAILDLLRRInRELGLTIVLITHQMEVIkQVCDRVAVLDAGRVVETGP---VIEVFMQPH 233
Cdd:COG4618 497 NLDDEGEAALAAAIRAL-KARGATVVVITHRPSLL-AAVDKLLVLRDGRVQAFGPrdeVLARLARPA 561
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-214 |
2.09e-30 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 120.85 E-value: 2.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraaR 81
Cdd:TIGR02857 322 LEFSGVSVAYPGRR---PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW---R 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSrTVYENVAlpLELAGVKRAEIE--ATVLPLLELV-----GLTAQKDRYPAQISGGQKQRVGIARA 154
Cdd:TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIR--LARPDASDAEIReaLERAGLDEFVaalpqGLDTPIGEGGAGLSGGQAQRLALARA 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIkQVCDRVAVL 214
Cdd:TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA-ALADRIVVL 529
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-223 |
2.17e-30 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 121.22 E-value: 2.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLTR---PSEGNVVVDGRDLTALSAADLR 78
Cdd:PRK13657 335 VEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTL---INLLQRvfdPQSGRILIDGTDIRTVTRASLR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarRDIGMIFQHfNLLSSRTVYENV------ALPLEL-AGVKRAE----IEATVLPLLELVGltaQKDRypaQISGGQKQ 147
Cdd:PRK13657 409 ---RNIAVVFQD-AGLFNRSIEDNIrvgrpdATDEEMrAAAERAQahdfIERKPDGYDTVVG---ERGR---QLSGGERQ 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 148 RVGIARALASKPKVLLSDEATSALDPETTR---AILDLLRRinrelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAkvkAALDELMK-----GRTTFIIAHRLSTVRNA-DRILVFDNGRVVESG 551
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-232 |
5.93e-30 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 118.02 E-value: 5.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlRAA 80
Cdd:PRK09536 3 MIDVSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA---RAA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNL---LSSRTVYENVALP--LELAGVKRAEiEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARAL 155
Cdd:PRK09536 76 SRRVASVPQDTSLsfeFDVRQVVEMGRTPhrSRFDTWTETD-RAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-220 |
6.03e-30 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 113.03 E-value: 6.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPS-EGNVVVDGRDLtalsaaDLRAARRDIGMIFQHFNLLSSRT 98
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALaGRRTGLGvSGEVLINGRPL------DKRSFRKIIGYVPQDDILHPTLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 VYENVALPLELAGvkraeieatvlpllelvgltaqkdrypaqISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:cd03213 99 VRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 640674200 179 ILDLLRRInRELGLTIVLITHQ-MEVIKQVCDRVAVLDAGRVV 220
Cdd:cd03213 150 VMSLLRRL-ADTGRTIICSIHQpSSEIFELFDKLLLLSQGRVI 191
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
19-223 |
1.39e-29 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 119.46 E-value: 1.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaarrdigmifQHFNLLS--- 95
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR----------QFINYLPqep 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 96 ---SRTVYENValpleLAGVKRAEIEATVLPLLELVGLTAQKDRYP-----------AQISGGQKQRVGIARALASKPKV 161
Cdd:TIGR01193 558 yifSGSILENL-----LLGAKENVSQDEIWAACEIAEIKDDIENMPlgyqtelseegSSISGGQKQRIALARALLTDSKV 632
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRElglTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:TIGR01193 633 LILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQG 690
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
21-219 |
3.52e-29 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 112.18 E-value: 3.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltALSAADLRAARRDIGMIFQHfNLLSSRTVY 100
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK---PISQYEHKYLHSKVSLVGQE-PVLFARSLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPL---ELAGVKRAEIEA---TVLPLLELvGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:cd03248 106 DNIAYGLqscSFECVKEAAQKAhahSFISELAS-GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 640674200 175 TTRAILDLLRRINRElgLTIVLITHQMEVIKQVcDRVAVLDAGRV 219
Cdd:cd03248 185 SEQQVQQALYDWPER--RTVLVIAHRLSTVERA-DQILVLDGGRI 226
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-222 |
8.08e-29 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 116.16 E-value: 8.08e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAArr 82
Cdd:PRK11288 6 SFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIFQHFNLLSSRTVYENV---ALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK11288 80 GVAIIYQELHLVPEMTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 160 KVLLSDEATSALD-PETTRaildlLRRINREL---GLTIVLITHQMEVIKQVCDRVAVLDAGRVVET 222
Cdd:PRK11288 160 RVIAFDEPTSSLSaREIEQ-----LFRVIRELraeGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-232 |
8.73e-29 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 112.19 E-value: 8.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlRAARRD 83
Cdd:PRK10575 14 LRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS---KAFARK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVAL---PLELA-GVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK10575 87 VAYLPQQLPAAEGMTVRELVAIgryPWHGAlGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfMQP 232
Cdd:PRK10575 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL-MRG 238
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-223 |
1.41e-28 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 109.81 E-value: 1.41e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAG--PQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalSAADLRA 79
Cdd:cd03369 7 IEVENLSVRYAPdlPP----VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI---STIPLED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQHFNLLSSrTVYENvalplelagvkraeieatvlplLELVGLTAQKDRYPA--------QISGGQKQRVGI 151
Cdd:cd03369 80 LRSSLTIIPQDPTLFSG-TIRSN----------------------LDPFDEYSDEEIYGAlrvsegglNLSQGQRQLLCL 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAIldllRRINREL--GLTIVLITHQMEVIKQvCDRVAVLDAGRVVETG 223
Cdd:cd03369 137 ARALLKRPRVLVLDEATASIDYATDALI----QKTIREEftNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
21-214 |
1.57e-28 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 110.19 E-value: 1.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAadlRAARRDIGMIFQHFNLLSSrTVY 100
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP---EIYRQQVSYCAQTPTLFGD-TVY 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELAGvKRAEIEATV--LPLLELVGLTAQKDryPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:PRK10247 99 DNLIFPWQIRN-QQPDPAIFLddLERFALPDTILTKN--IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 640674200 179 ILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVL 214
Cdd:PRK10247 176 VNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-232 |
1.85e-28 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 115.97 E-value: 1.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGP-QGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAA 80
Cdd:TIGR00958 479 IEFQDVS--FSYPnRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY---DHHYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHfNLLSSRTVYENVALPL---ELAGVKRAEIEATVLPLLELV--GLTAQKDRYPAQISGGQKQRVGIARAL 155
Cdd:TIGR00958 554 HRQVALVGQE-PVLFSGSVRENIAYGLtdtPDEEIMAAAKAANAHDFIMEFpnGYDTEVGEKGSQLSGGQKQRIAIARAL 632
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRelglTIVLITHQMEVIKQvCDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQESRSRASR----TVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-223 |
2.10e-28 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 115.99 E-value: 2.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTlvrTINLLT---RPSEGNV-----VVDGRDLtals 73
Cdd:NF033858 267 IEARGLTMRF----GDFTAVDHVSFRIRRGEIFGFLGSNGCGKST---TMKMLTgllPASEGEAwlfgqPVDAGDI---- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 aadlrAARRDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIAR 153
Cdd:NF033858 336 -----ATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAV 410
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM-EVikQVCDRVAVLDAGRVVETG 223
Cdd:NF033858 411 AVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMnEA--ERCDRISLMHAGRVLASD 479
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
21-233 |
2.58e-27 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 107.79 E-value: 2.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraARRdIGMIFQHFNLLSSRTVY 100
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL--ARR-LALLPQHHLTPEGITVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVAL---P-LELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETT 176
Cdd:PRK11231 95 ELVAYgrsPwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 177 RAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfMQPH 233
Cdd:PRK11231 175 VELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV-MTPG 229
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-223 |
3.03e-27 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 113.18 E-value: 3.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFAgPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTAlsaaDLRAARRD 83
Cdd:TIGR01257 931 VKNLVKIFE-PSG-RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET----NLDAVRQS 1004
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLL 163
Cdd:TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 164 SDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETG 223
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYRS--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-220 |
3.28e-27 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 106.89 E-value: 3.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlRAA 80
Cdd:PRK11614 5 MLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA--KIM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLELAgvKRAEIEATVLPLLELVG-LTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-223 |
1.24e-26 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 103.93 E-value: 1.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRtinLLTR---PSEGNVVVDGRDLtalsaADLR 78
Cdd:cd03247 1 LSINNVS--FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQ---LLTGdlkPQQGEITLDGVPV-----SDLE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 AARRD-IGMIFQHFNLLSSrTVYENVALPLelagvkraeieatvlpllelvgltaqkdrypaqiSGGQKQRVGIARALAS 157
Cdd:cd03247 71 KALSSlISVLNQRPYLFDT-TLRNNLGRRF----------------------------------SGGERQRLALARILLQ 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 158 KPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-222 |
1.48e-26 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 109.49 E-value: 1.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLT--RPS---EGNVVVDGRdltALSAA 75
Cdd:NF040905 1 ILEMRGITKTFPG----VKALDDVNLSVREGEIHALCGENGAGKSTL---MKVLSgvYPHgsyEGEILFDGE---VCRFK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAA-RRDIGMIFQHFNLLSSRTVYENVALPLELA--GV---KRAEIEATVlpLLELVGLTAQKDRYPAQISGGQKQRV 149
Cdd:NF040905 71 DIRDSeALGIVIIHQELALIPYLSIAENIFLGNERAkrGVidwNETNRRARE--LLAKVGLDESPDTLVTDIGVGKQQLV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVET 222
Cdd:NF040905 149 EIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIET 220
|
|
| NIL |
smart00930 |
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine ... |
266-340 |
1.85e-26 |
|
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.
Pssm-ID: 197998 [Multi-domain] Cd Length: 76 Bit Score: 99.89 E-value: 1.85e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 266 GHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQIDEIQGQAFGSLAVLAGGEPGKVGEALAYLREQGVVVEEL 340
Cdd:smart00930 2 GRLVRLTFTGESADEPLISQLAREFGVDVNILHGNIERIQGGPFGSLVVELTGDEEDIEAALAYLREQGVEVEVL 76
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
19-229 |
7.97e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 104.32 E-value: 7.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTaLSAADLRAARRDIGMIFQHFNLLSSRT 98
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD-YSKRGLLALRQQVATVFQDPEQQIFYT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 -VYENVALPLELAGVKRAEIEATVLPLLELVglTAQKDRY-PAQ-ISGGQKQRVGIARALASKPKVLLSDEATSALDPET 175
Cdd:PRK13638 94 dIDSDIAFSLRNLGVPEAEITRRVDEALTLV--DAQHFRHqPIQcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 640674200 176 TRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVF 229
Cdd:PRK13638 172 RTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
21-223 |
1.34e-25 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 102.35 E-value: 1.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPS--EGNVVVDGRDLTAlsaadlRAARRDIGMIFQHFNLLSSR 97
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAIsGRVEGGGttSGQILFNGQPRKP------DQFQKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYE------NVALPLELAGVKRAEIEATVLplLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSAL 171
Cdd:cd03234 97 TVREtltytaILRLPRKSSDAIRKKRVEDVL--LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 640674200 172 DPETTRAILDLLRRINRelGLTIVLIT-HQMEV-IKQVCDRVAVLDAGRVVETG 223
Cdd:cd03234 175 DSFTALNLVSTLSQLAR--RNRIVILTiHQPRSdLFRLFDRILLLSSGEIVYSG 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-220 |
1.42e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.64 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRfagpqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAARR 82
Cdd:COG1129 258 EVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRD--AIRA 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMI---FQHFNLLSSRTVYENVALP----LELAG-VKRAEIEATVLPLLELVGL-TAQKDRYPAQISGGQKQRVGIAR 153
Cdd:COG1129 328 GIAYVpedRKGEGLVLDLSIRENITLAsldrLSRGGlLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAK 407
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 154 ALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:COG1129 408 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-223 |
2.04e-25 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 106.85 E-value: 2.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLS------QRFAGPqgwvealhdVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLT--RPSEGNVVVDGRDLTALs 73
Cdd:PRK11174 350 IEAEDLEilspdgKTLAGP---------LNFTLPAGQRIALVGPSGAGKTSL---LNALLgfLPYQGSLKINGIELREL- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 74 aaDLRAARRDIGMIFQHFNLLSSrTVYENVAL------------PLELAGVKraEIeatvLPLLELvGL-TAQKDRyPAQ 140
Cdd:PRK11174 417 --DPESWRKHLSWVGQNPQLPHG-TLRDNVLLgnpdasdeqlqqALENAWVS--EF----LPLLPQ-GLdTPIGDQ-AAG 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 141 ISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVV 220
Cdd:PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVMQDGQIV 562
|
...
gi 640674200 221 ETG 223
Cdd:PRK11174 563 QQG 565
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-224 |
3.94e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 105.78 E-value: 3.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTrPS---EGNVVVDGRDLTALSAADL 77
Cdd:PRK13549 5 LLEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIFEGEELQASNIRDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RAArrDIGMIFQHFNLLSSRTVYENVALPLELAGVKRAEIEATVL---PLLELVGLTAQKDRYPAQISGGQKQRVGIARA 154
Cdd:PRK13549 80 ERA--GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLraqKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
22-241 |
9.08e-25 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 101.22 E-value: 9.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 22 HDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraARRdIGMIFQHFNLLSSRTVYE 101
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV--ARR-IGLLAQNATTPGDITVQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 102 NVA---LPLE-LAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTR 177
Cdd:PRK10253 101 LVArgrYPHQpLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 178 AILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGpvievfmQPHHEVTRALI 241
Cdd:PRK10253 181 DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG-------APKEIVTAELI 237
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-218 |
1.66e-24 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 98.70 E-value: 1.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVE-ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTInlL--TRPSEGNVVVDGRdltalsaadlr 78
Cdd:cd03250 1 ISVEDASFTWDSGEQETSfTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LgeLEKLSGSVSVPGS----------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarrdIGMIFQhFNLLSSRTVYENV--ALPLELAGVKRAeIEA-------TVLPLLELV-----GLTaqkdrypaqISGG 144
Cdd:cd03250 68 -----IAYVSQ-EPWIQNGTIRENIlfGKPFDEERYEKV-IKAcalepdlEILPDGDLTeigekGIN---------LSGG 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 145 QKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDRVAVLDAGR 218
Cdd:cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| NIL |
pfam09383 |
NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in ... |
268-339 |
5.11e-24 |
|
NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.
Pssm-ID: 462781 [Multi-domain] Cd Length: 73 Bit Score: 93.28 E-value: 5.11e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 268 LLRLAFTGSGVDQPILSETIRRYELDFNILHGQIDEIQGQAFGSLAVLAGGEPGKVGEALAYLREQGVVVEE 339
Cdd:pfam09383 2 LVRLTFPGESADEPVISRLAREFGVDVNILYGNIEEIQGTPFGSLILELPGDPEQIEAALAYLREQGVEVEV 73
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-200 |
6.46e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 102.44 E-value: 6.46e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAr 81
Cdd:TIGR02868 335 LELRDLSAGYPGAP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 rdIGMIFQHFNLLSSrTVYENVALPLELAGvkraeiEATVLPLLELVGLTAQKDRYP-----------AQISGGQKQRVG 150
Cdd:TIGR02868 411 --VSVCAQDAHLFDT-TVRENLRLARPDAT------DEELWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLA 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 640674200 151 IARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQ 200
Cdd:TIGR02868 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLAALS--GRTVVLITHH 529
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-249 |
8.30e-24 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 102.05 E-value: 8.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAdlRAA 80
Cdd:PRK15439 11 LLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA--KAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYENVALPLElagvKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK15439 85 QLGIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAildLLRRIN--RELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfmqPHHEVTR 238
Cdd:PRK15439 161 ILILDEPTASLTPAETER---LFSRIRelLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL---STDDIIQ 234
|
250
....*....|.
gi 640674200 239 ALIGDVIAQEL 249
Cdd:PRK15439 235 AITPAAREKSL 245
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
21-225 |
8.92e-24 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 102.19 E-value: 8.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVV-DGRDLTALS------AADLRAArrdigmifqhfnl 93
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPqrpylpLGTLREA------------- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 94 lssrtvyenVALPLELAGVKRAEIEATvlplLELVGLTA------QKDRYPAQISGGQKQRVGIARALASKPKVLLSDEA 167
Cdd:COG4178 446 ---------LLYPATAEAFSDAELREA----LEAVGLGHlaerldEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEA 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 168 TSALDPETTRAILDLLRRinRELGLTIVLITHQmEVIKQVCDRVAVLDAGRVVETGPV 225
Cdd:COG4178 513 TSALDEENEAALYQLLRE--ELPGTTVISVGHR-STLAAFHDRVLELTGDGSWQLLPA 567
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-223 |
1.31e-23 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 101.72 E-value: 1.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFA-GPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVrtiNLLT---RPSEGNVVVDGRDLTALSAADL 77
Cdd:PRK10790 341 IDIDNVS--FAyRDDNLV--LQNINLSVPSRGFVALVGHTGSGKSTLA---SLLMgyyPLTEGEIRLDGRPLSSLSHSVL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 RaarRDIGMIFQHFNLLSSrTVYENVALPLELAgvkraeiEATVLPLLELVGLTAQKDRYPAQI-----------SGGQK 146
Cdd:PRK10790 414 R---QGVAMVQQDPVVLAD-TFLANVTLGRDIS-------EEQVWQALETVQLAELARSLPDGLytplgeqgnnlSVGQK 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 147 QRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVEA-DTILVLHRGQAVEQG 556
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-242 |
1.35e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 101.26 E-value: 1.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRfaGPQGwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadlRAARR 82
Cdd:COG3845 259 EVENLSVR--DDRG-VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLS----PRERR 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DIGMIF-----QHFNLLSSRTVYENVAL------PLELAG-VKRAEIEATVLPLLELVGLTAQKDRYPA-QISGGQKQRV 149
Cdd:COG3845 332 RLGVAYipedrLGRGLVPDMSVAENLILgryrrpPFSRGGfLDRKAIRAFAEELIEEFDVRTPGPDTPArSLSGGNQQKV 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVetGPVievf 229
Cdd:COG3845 412 ILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSDRIAVMYEGRIV--GEV---- 484
|
250
....*....|...
gi 640674200 230 mqPHHEVTRALIG 242
Cdd:COG3845 485 --PAAEATREEIG 495
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-251 |
2.41e-23 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 100.57 E-value: 2.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAARRD 83
Cdd:PRK10982 1 MSNISKSFPG----VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE--ALENG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVAL---PLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK10982 75 ISMVHQELNLVLQRSVMDNMWLgryPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQphhEVTRAL 240
Cdd:PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD---KIIAMM 230
|
250
....*....|.
gi 640674200 241 IGDVIAQELPP 251
Cdd:PRK10982 231 VGRSLTQRFPD 241
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-224 |
2.43e-23 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 100.28 E-value: 2.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLtRPS---EGNVVVDGRDLTALSAADl 77
Cdd:TIGR02633 1 LLEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-YPHgtwDGEIYWSGSPLKASNIRD- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 78 rAARRDIGMIFQHFNLLSSRTVYENVALPLEL----------AGVKRAEieatvlPLLELVGLTAQKDRYP-AQISGGQK 146
Cdd:TIGR02633 75 -TERAGIVIIHQELTLVPELSVAENIFLGNEItlpggrmaynAMYLRAK------NLLRELQLDADNVTRPvGDYGGGQQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 147 QRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-243 |
3.93e-22 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 93.42 E-value: 3.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 6 NLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlrAARRDIG 85
Cdd:PRK10895 8 NLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA--RARRGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 86 MIFQHFNLLSSRTVYENVALPLEL-AGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLS 164
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 165 DEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFMQPHheVTRALIGD 243
Cdd:PRK10895 162 DEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH--VKRVYLGE 237
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-231 |
8.97e-22 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 96.55 E-value: 8.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAar 81
Cdd:TIGR00957 1285 VEFRNYCLRYREDLDLV--LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF-- 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 rDIGMIFQHFNLLS----------SRTVYENVALPLELAGVKRAeieATVLPllelVGLTAQKDRYPAQISGGQKQRVGI 151
Cdd:TIGR00957 1361 -KITIIPQDPVLFSgslrmnldpfSQYSDEEVWWALELAHLKTF---VSALP----DKLDHECAEGGENLSVGQRQLVCL 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElgLTIVLITHQMEVIKQVCdRVAVLDAGRVVETGPVIEVFMQ 231
Cdd:TIGR00957 1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED--CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-219 |
2.16e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 94.75 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 4 IRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGrdltalsaaDLRaarrd 83
Cdd:COG0488 1 LENLSKSFGGR----PLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK---------GLR----- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 84 IGMIFQHFNLLSSRTVYENVALPL-ELAGVKRA-------------------------------EIEATVLPLLELVGLT 131
Cdd:COG0488 63 IGYLPQEPPLDDDLTVLDTVLDGDaELRALEAEleeleaklaepdedlerlaelqeefealggwEAEARAEEILSGLGFP 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 132 -AQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelglTIVLITHQMEVIKQVCDR 210
Cdd:COG0488 143 eEDLDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYPG----TVLVVSHDRYFLDRVATR 218
|
....*....
gi 640674200 211 VAVLDAGRV 219
Cdd:COG0488 219 ILELDRGKL 227
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-221 |
2.65e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 94.36 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVdGRDLTalsaadlraa 80
Cdd:COG0488 315 VLELEGLSKSYGD----KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVK---------- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rrdIGMIFQHFNLL-SSRTVYEnvalplELAGVKRAEIEATVLPLLELVGLTAQK-DRYPAQISGGQKQRVGIARALASK 158
Cdd:COG0488 380 ---IGYFDQHQEELdPDKTVLD------ELRDGAPGGTEQEVRGYLGRFLFSGDDaFKPVGVLSGGEKARLALAKLLLSP 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 159 PKVLLSDEATSALDPETTRAILDLLRRINrelGlTIVLITHQMEVIKQVCDRVAVLDAGRVVE 221
Cdd:COG0488 451 PNVLLLDEPTNHLDIETLEALEEALDDFP---G-TVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-234 |
3.22e-21 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 91.06 E-value: 3.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 24 VNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTrPSEGNVVVDGRDLTALSAADLrAARRdiGMIFQHFNLLSSRTVYENV 103
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAEL-ARHR--AYLSQQQSPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 104 ALPLElAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA-------SKPKVLLSDEATSALDPETT 176
Cdd:COG4138 91 ALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLLDEPMNSLDVAQQ 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 177 RAILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfMQPHH 234
Cdd:COG4138 170 AALDRLLREL-CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEV-MTPEN 225
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-227 |
4.10e-21 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 93.91 E-value: 4.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGpqgwVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA 80
Cdd:PRK10762 4 LLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 rrDIGMIFQHFNLLSSRTVYENVALPLE----LAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:PRK10762 80 --GIGIIHQELNLIPQLTIAENIFLGREfvnrFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 157 SKPKVLLSDEATSAL-DPETTrailDLLRRIN--RELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIE 227
Cdd:PRK10762 158 FESKVIIMDEPTDALtDTETE----SLFRVIRelKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-228 |
7.43e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 93.65 E-value: 7.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTL------VRTINlltrpsEGNVVVDGRDLTalSAA 75
Cdd:NF033858 2 ARLEGVSHRY----GKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLlsliagARKIQ------QGRVEVLGGDMA--DAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 DLRAARRDIGMIFQHF--NLLSSRTVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRyPA-QISGGQKQRVGIA 152
Cdd:NF033858 70 HRRAVCPRIAYMPQGLgkNLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADR-PAgKLSGGMKQKLGLC 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 153 RALASKPKVLLSDEATSALDPETTRAILDLLRRINREL-GLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGPVIEV 228
Cdd:NF033858 149 CALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERpGMSVLVATAYMEEAER-FDWLVAMDAGRVLATGTPAEL 224
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
23-221 |
1.94e-20 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 88.09 E-value: 1.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTI--NLLTRPSEGNVVVDGRDLTalsaadlraarrdigmifqhfnllSSRTVY 100
Cdd:COG2401 48 DLNLEIEPGEIVLIVGASGSGKSTLLRLLagALKGTPVAGCVDVPDNQFG------------------------REASLI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELAGVKRaeieatvlpLLELVGLTaqkD-----RYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPET 175
Cdd:COG2401 104 DAIGRKGDFKDAVE---------LLNAVGLS---DavlwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQT 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 640674200 176 TRAILDLLRRINRELGLTIVLITHQMEVIKQVC-DRVAVLDAGRVVE 221
Cdd:COG2401 172 AKRVARNLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVPE 218
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-221 |
3.20e-20 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 92.11 E-value: 3.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaarRDIGMIFQHfNLLSSRTVY 100
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR---KVLGIIPQA-PVLFSGTVR 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVAlPLE-------LAGVKRAEIEATVL--PLlelvGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSAL 171
Cdd:PLN03130 1331 FNLD-PFNehndadlWESLERAHLKDVIRrnSL----GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 640674200 172 DPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVE 221
Cdd:PLN03130 1406 DVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDAGRVVE 1452
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
31-217 |
5.99e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 91.23 E-value: 5.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 31 GEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRD-LTALSAAdlraaRRDIGMIFQHFNLLSSRTVYENVALPLEL 109
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSiLTNISDV-----HQNMGYCPQFDAIDDLLTGREHLYLYARL 2039
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 110 AGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRE 189
Cdd:TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119
|
170 180
....*....|....*....|....*...
gi 640674200 190 lGLTIVLITHQMEVIKQVCDRVAVLDAG 217
Cdd:TIGR01257 2120 -GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-215 |
8.25e-20 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 87.09 E-value: 8.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVvdgrdltalsaadlRAA 80
Cdd:PRK09544 4 LVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK--------------RNG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLlssrtvyeNVALPLELA-------GVKRAEIeatvLPLLELVGlTAQKDRYPAQ-ISGGQKQRVGIA 152
Cdd:PRK09544 66 KLRIGYVPQKLYL--------DTTLPLTVNrflrlrpGTKKEDI----LPALKRVQ-AGHLIDAPMQkLSGGETQRVLLA 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 153 RALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:PRK09544 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN 195
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-200 |
2.00e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 84.93 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRfagpQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaaDLRAA 80
Cdd:PRK13539 2 MLEGEDLACV----RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP---DVAEA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGmifqHFNLL-SSRTVYENVALPLELAGVKRAEIEATvlplLELVGLTAQKDRYPAQISGGQKQRVGIARALASKP 159
Cdd:PRK13539 75 CHYLG----HRNAMkPALTVAENLEFWAAFLGGEELDIAAA----LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRiNRELGLTIVLITHQ 200
Cdd:PRK13539 147 PIWILDEPTAALDAAAVALFAELIRA-HLAQGGIVIAATHI 186
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-228 |
2.23e-19 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 87.87 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTrPSEGNvvvdgRDLTALS-AADLRAA 80
Cdd:NF000106 14 VEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G-PDAGR-----RPWRF*TwCANRRAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMifqHFNLLSSR----TVYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:NF000106 84 RRTIG*---HRPVR*GRresfSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:NF000106 161 GRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-215 |
3.45e-19 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 83.36 E-value: 3.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVeALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVvdgrdltalsaadlRAAR 81
Cdd:cd03223 1 IELENLS--LATPDGRV-LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG--------------MPEG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQH--FNLLSSRtvyENVALPLElagvkraeieaTVLpllelvgltaqkdrypaqiSGGQKQRVGIARALASKP 159
Cdd:cd03223 64 EDLLFLPQRpyLPLGTLR---EQLIYPWD-----------DVL-------------------SGGEQQRLAFARLLLHKP 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLrrinRELGLTIVLITHQmEVIKQVCDRVAVLD 215
Cdd:cd03223 111 KFVFLDEATSALDEESEDRLYQLL----KELGITVISVGHR-PSLWKFHDRVLDLD 161
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
20-228 |
5.18e-19 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 88.02 E-value: 5.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR-DLTALSAAdlraarrdigmifqhfnLLSSRT 98
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSaALIAISSG-----------------LNGQLT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 VYENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRA 178
Cdd:PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKK 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 640674200 179 ILDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:PRK13545 182 CLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-218 |
9.50e-19 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 81.34 E-value: 9.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVvvdgrdltalsaadlraaR 81
Cdd:cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------------------T 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFnllssrtvyenvalplelagvkraeieatvlpllelvgltaqkdrypAQISGGQKQRVGIARALASKPKV 161
Cdd:cd03221 59 WGSTVKIGYF-----------------------------------------------EQLSGGEKMRLALAKLLLENPNL 91
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 162 LLSDEATSALDPETTRAILDLLRRINRelglTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
11-232 |
1.06e-18 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 87.08 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 11 FAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadLRAARRDIGMIFQH 90
Cdd:PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---LDSWRSRLAVVSQT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 91 fNLLSSRTVYENVAL------PLELAGVKR-AEIEATVLPLLElvGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLL 163
Cdd:PRK10789 398 -PFLFSDTVANNIALgrpdatQQEIEHVARlASVHDDILRLPQ--GYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 164 SDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVFMQP 232
Cdd:PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTEA-SEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
21-234 |
1.07e-18 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 84.49 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPSE-------GNVVVDGRDLTALSAADLRAARRDIGMIFQHFN 92
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALaGDLTGGGAprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 93 LLSSRTVYENVALP-LELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALA---------SKPKVL 162
Cdd:PRK13547 97 AFSAREIVLLGRYPhARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAqlwpphdaaQPPRYL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 163 LSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVfMQPHH 234
Cdd:PRK13547 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV-LTPAH 247
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-221 |
1.27e-18 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 87.34 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLraaRRDIGMIFQHfNLLSSRTVY 100
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL---RRVLSIIPQS-PVLFSGTVR 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLE------LAGVKRAEIEATVLPllELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PLN03232 1328 FNIDPFSEhndadlWEALERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 640674200 175 TTrailDLLRRINRE--LGLTIVLITHQMEVIKQvCDRVAVLDAGRVVE 221
Cdd:PLN03232 1406 TD----SLIQRTIREefKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE 1449
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
20-235 |
4.69e-18 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 82.56 E-value: 4.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGrdltalsaadlraarrDIGMIFQHFNLLSSRTV 99
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG----------------EVSVIAISAGLSGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 YENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAI 179
Cdd:PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 180 LDLLRRInRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEVFmqPHHE 235
Cdd:PRK13546 183 LDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL--PKYE 235
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
21-225 |
5.73e-18 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 84.71 E-value: 5.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLTRPSEGNVVVDGRDLTALSAADLRAARRDIGMIFQHFNLLSSRTVY 100
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTL---MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 EN------VALPLELAGVKRAEIeatVLPLLELVGLT-AQKDR--YPAQ---ISGGQKQRVGIARALASKPKVLLSDEAT 168
Cdd:TIGR00955 118 EHlmfqahLRMPRRVTKKEKRER---VDEVLQALGLRkCANTRigVPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPT 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 169 SALDPETTRAILDLLRRINRElGLTIVLITHQ-----MEVIKQVCdrvaVLDAGRVVETGPV 225
Cdd:TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQpsselFELFDKII----LMAEGRVAYLGSP 251
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
20-229 |
6.22e-18 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 82.24 E-value: 6.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 20 ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARRDIGMIFQHFNLLSSRTV 99
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 YENVALPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAI 179
Cdd:PRK15056 102 MMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 640674200 180 LDLLRRInRELGLTIVLITHQMEVIKQVCDrVAVLDAGRVVETGPVIEVF 229
Cdd:PRK15056 182 ISLLREL-RDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTF 229
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
16-200 |
3.35e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 78.55 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 16 GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLtalsaADLRAARRDIGMIFQHFNLLS 95
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL-----AEQRDEPHENILYLGHLPGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 96 SR-TVYENVALPLELAGVKRAEIEAtvlpLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:TIGR01189 86 PElSALENLHFWAAIHGGAQRTIED----ALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKA 161
|
170 180
....*....|....*....|....*.
gi 640674200 175 TTRAILDLLRRiNRELGLTIVLITHQ 200
Cdd:TIGR01189 162 GVALLAGLLRA-HLARGGIVLLTTHQ 186
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-240 |
4.23e-17 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 82.52 E-value: 4.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadLRAARRDIGMIFQHfNLLSSRTVY 100
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG---LRELRRQFSMIPQD-PVLFDGTVR 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELAgvkraeiEATVLPLLELVGLtaqKDRYPAQISG--------------GQKQRVGIARALASK-PKVLLSD 165
Cdd:PTZ00243 1402 QNVDPFLEAS-------SAEVWAALELVGL---RERVASESEGidsrvleggsnysvGQRQLMCMARALLKKgSGFILMD 1471
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 166 EATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRVVETGPVIEVFMQPH---HEVTRAL 240
Cdd:PTZ00243 1472 EATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMNRQsifHSMVEAL 1546
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
24-228 |
5.39e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 79.21 E-value: 5.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 24 VNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTrPSEGNVVVDGRDLTALSAADLrAARRdiGMIFQHFNLLSSRTVYENV 103
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAEL-ARHR--AYLSQQQTPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 104 ALPLElAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIA-------RALASKPKVLLSDEATSALDPeTT 176
Cdd:PRK03695 91 TLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAavvlqvwPDINPAGQLLLLDEPMNSLDV-AQ 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 640674200 177 RAILDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGPVIEV 228
Cdd:PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
5-220 |
7.62e-17 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 77.69 E-value: 7.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 5 RNLSQRFagPQGWVEA--LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPS---EGNVVVDGRDltalSAADLRA 79
Cdd:cd03233 7 RNISFTT--GKGRSKIpiLKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIP----YKEFAEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQ---HFNLLssrtvyenvalplelagvkraeieaTVLPLLELVgLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:cd03233 81 YPGEIIYVSEedvHFPTL-------------------------TVRETLDFA-LRCKGNEFVRGISGGERKRVSIAEALV 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQM--EVIKQVcDRVAVLDAGRVV 220
Cdd:cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAsdEIYDLF-DKVLVLYEGRQI 199
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-219 |
8.47e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 81.20 E-value: 8.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrfaGPqgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAA- 80
Cdd:PRK10762 258 LKVDNLS----GP-----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANg 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 --------RRD---IGMifqhfnllssrTVYENVALPL------ELAGVKRAEIEATVLPLLELVGL-TAQKDRYPAQIS 142
Cdd:PRK10762 329 ivyisedrKRDglvLGM-----------SVKENMSLTAlryfsrAGGSLKHADEQQAVSDFIRLFNIkTPSMEQAIGLLS 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 143 GGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
58-215 |
9.36e-17 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 81.61 E-value: 9.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 58 SEGNVVVDGRDLTALSAADLRaarrDIGMIFQHFNLLSSRTVYENVALPLE---LAGVKRAEIEATVLPLLElvGLTAQK 134
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNLKDLR----NLFSIVSQEPMLFNMSIYENIKFGKEdatREDVKRACKFAAIDEFIE--SLPNKY 1348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 135 DR----YPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQvCDR 210
Cdd:PTZ00265 1349 DTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDK 1427
|
....*
gi 640674200 211 VAVLD 215
Cdd:PTZ00265 1428 IVVFN 1432
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-223 |
1.03e-16 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 78.53 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTInlLTRPS----EGNVVVDGRDLTALSAaD 76
Cdd:CHL00131 7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVI--AGHPAykilEGDILFKGESILDLEP-E 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 LRAaRRDIGMIFQHfnllssrtvyenvalPLELAGVKRA-----------------EIEA-----TVLPLLELVGLTAQ- 133
Cdd:CHL00131 80 ERA-HLGIFLAFQY---------------PIEIPGVSNAdflrlaynskrkfqglpELDPlefleIINEKLKLVGMDPSf 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 134 KDRYPAQ-ISGGQKQRVGIARALASKPKVLLSDEATSALDpettraiLDLLRRINRELGL------TIVLITHQ---MEV 203
Cdd:CHL00131 144 LSRNVNEgFSGGEKKRNEILQMALLDSELAILDETDSGLD-------IDALKIIAEGINKlmtsenSIILITHYqrlLDY 216
|
250 260
....*....|....*....|
gi 640674200 204 IKQvcDRVAVLDAGRVVETG 223
Cdd:CHL00131 217 IKP--DYVHVMQNGKIIKTG 234
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
18-205 |
2.58e-16 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 80.46 E-value: 2.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 18 VEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDgrDLTALSAADLRAARRDIGMIFQHfNLLSSR 97
Cdd:PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN--DSHNLKDINLKWWRSKIGVVSQD-PLLFSN 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYENVALPL------------------------------------------------ELAGVKR-------AEIEATVL 122
Cdd:PTZ00265 475 SIKNNIKYSLyslkdlealsnyynedgndsqenknkrnscrakcagdlndmsnttdsnELIEMRKnyqtikdSEVVDVSK 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 123 PLLELVGLTAQKDRY-------PAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIV 195
Cdd:PTZ00265 555 KVLIHDFVSALPDKYetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI 634
|
250
....*....|
gi 640674200 196 LITHQMEVIK 205
Cdd:PTZ00265 635 IIAHRLSTIR 644
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-223 |
6.81e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 79.01 E-value: 6.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRT-INLLTRPSEGNVVVDGRdltalsaadlRAARRDIGMIFqhfnllsSRTV 99
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAmLGELPPRSDASVVIRGT----------VAYVPQVSWIF-------NATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 YENV--ALPLELAGVKRAeIEATVL----PLLELVGLTAQKDRyPAQISGGQKQRVGIARALASKPKVLLSDEATSALDP 173
Cdd:PLN03130 696 RDNIlfGSPFDPERYERA-IDVTALqhdlDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 640674200 174 ETTRAILDllRRINREL-GLTIVLITHQMEVIKQVcDRVAVLDAGRVVETG 223
Cdd:PLN03130 774 HVGRQVFD--KCIKDELrGKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEG 821
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-221 |
2.31e-15 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 76.93 E-value: 2.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGWveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsAADLRAAR 81
Cdd:PRK10522 323 LELRNVTFAY-QDNGF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT---AEQPEDYR 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQHFNLLSSRTVYENVALPLELAgvkraeieATVLPLLELVG-LTAQKDRYP-AQISGGQKQRVGIARALASKP 159
Cdd:PRK10522 397 KLFSAVFTDFHLFDQLLGPEGKPANPALV--------EKWLERLKMAHkLELEDGRISnLKLSKGQKKRLALLLALAEER 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 160 KVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVE 221
Cdd:PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA-DRLLEMRNGQLSE 529
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-229 |
1.36e-14 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 74.98 E-value: 1.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSqrFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGrdltalsaadlraar 81
Cdd:TIGR00957 637 ITVHNAT--FTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------- 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 rDIGMIFQHfNLLSSRTVYENVAL--PLElAGVKRAEIEA-TVLPLLELV--GLTAQKDRYPAQISGGQKQRVGIARALA 156
Cdd:TIGR00957 700 -SVAYVPQQ-AWIQNDSLRENILFgkALN-EKYYQQVLEAcALLPDLEILpsGDRTEIGEKGVNLSGGQKQRVSLARAVY 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 157 SKPKVLLSDEATSALDPETTRAILD-------LLRrinrelGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVF 229
Cdd:TIGR00957 777 SNADIYLFDDPLSAVDAHVGKHIFEhvigpegVLK------NKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-219 |
1.40e-14 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 72.96 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAgpQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRT-INLLTrpSEGNVVVDGRDLTALSaadLRAA 80
Cdd:cd03289 3 MTVKDLTAKYT--EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAfLRLLN--TEGDIQIDGVSWNSVP---LQKW 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSrTVYENvalpLELAGVKRAEieaTVLPLLELVGLTAQKDRYPAQI-----------SGGQKQRV 149
Cdd:cd03289 76 RKAFGVIPQKVFIFSG-TFRKN----LDPYGKWSDE---EIWKVAEEVGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLM 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 150 GIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRelGLTIVLITHQMEVIKQvCDRVAVLDAGRV 219
Cdd:cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA--DCTVILSEHRIEAMLE-CQRFLVIEENKV 214
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
21-202 |
2.05e-14 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 71.21 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARR-DIGMIFQHFNLLSSrTV 99
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRySVAYAAQKPWLLNA-TV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 YENVAL--PLELAGVKrAEIEATVL-PLLELV--GLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:cd03290 96 EENITFgsPFNKQRYK-AVTDACSLqPDIDLLpfGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174
|
170 180 190
....*....|....*....|....*....|...
gi 640674200 175 TT-----RAILDLLRRINRelglTIVLITHQME 202
Cdd:cd03290 175 LSdhlmqEGILKFLQDDKR----TLVLVTHKLQ 203
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-217 |
2.66e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 70.60 E-value: 2.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLsqrfAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAAr 81
Cdd:cd03231 1 LEADEL----TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 rdigMIFQHFNLLSSR-TVYENVALPLELAGvkraeiEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPK 160
Cdd:cd03231 76 ----LYLGHAPGIKTTlSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRiNRELGLTIVLITHQMevIKQVCDRVAVLDAG 217
Cdd:cd03231 146 LWILDEPTTALDKAGVARFAEAMAG-HCARGGMVVLTTHQD--LGLSEAGARELDLG 199
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-221 |
2.72e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 73.67 E-value: 2.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGpqgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAD------ 76
Cdd:PRK09700 267 EVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDavkkgm 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 --LRAARRDIGMiFQHFnllssrTVYENVALP--LELAGVKRAeieatvlpllelVGL--------TAQKDRYPAQI--- 141
Cdd:PRK09700 341 ayITESRRDNGF-FPNF------SIAQNMAISrsLKDGGYKGA------------MGLfhevdeqrTAENQRELLALkch 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 142 ---------SGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVA 212
Cdd:PRK09700 402 svnqnitelSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIA 480
|
....*....
gi 640674200 213 VLDAGRVVE 221
Cdd:PRK09700 481 VFCEGRLTQ 489
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-229 |
3.30e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 73.86 E-value: 3.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVdgrdltalsaadLRAARRDIGMIFQHFNllssRTVY 100
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFN----ATVR 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVAL--PLELAGVKRAeIEATVLP----LLELVGLTAQKDRyPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PLN03232 697 ENILFgsDFESERYWRA-IDVTALQhdldLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 175 TTRAILDLLrrINREL-GLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEVF 229
Cdd:PLN03232 775 VAHQVFDSC--MKDELkGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELS 827
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-219 |
3.42e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.16 E-value: 3.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADlraaRRDIGMIF-----QHFNL 93
Cdd:PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ----RLARGLVYlpedrQSSGL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 94 LSSRTVYENV-ALPLELAG--VKRAEIEATVLPLLELVGLTAQKDRYPAQ-ISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:PRK15439 353 YLDAPLAWNVcALTHNRRGfwIKPARENAVLERYRRALNIKFNHAEQAARtLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 640674200 170 ALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:PRK15439 433 GVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
5-217 |
4.21e-14 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 69.96 E-value: 4.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 5 RNLSQRFAGPQGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTinLLTRPS----EGNVVVDGRDLTAlsaadlrAA 80
Cdd:cd03232 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDV--LAGRKTagviTGEILINGRPLDK-------NF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 81 RRDIGMIFQHFNLLSSRTVYEnvalPLELAGVKRaeieatvlpllelvGLTAQkdrypaqisggQKQRVGIARALASKPK 160
Cdd:cd03232 78 QRSTGYVEQQDVHSPNLTVRE----ALRFSALLR--------------GLSVE-----------QRKRLTIGVELAAKPS 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 161 VLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQ-MEVIKQVCDRVAVLDAG 217
Cdd:cd03232 129 ILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQpSASIFEKFDRLLLLKRG 185
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-221 |
1.61e-13 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 71.37 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGwvE---ALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLR 78
Cdd:COG4615 328 LELRGVTYRYPGEDG--DegfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNREAYR 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 79 aarrdigmifQHFNllssrTVYENVALPLELAGVKRAEIEATVLPLLELVGL----TAQKDRY-PAQISGGQKQRVGIAR 153
Cdd:COG4615 406 ----------QLFS-----AVFSDFHLFDRLLGLDGEADPARARELLERLELdhkvSVEDGRFsTTDLSQGQRKRLALLV 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 154 ALASKPKVLLSDEATSALDPET----TRAILDLLRRinreLGLTIVLITHQmEVIKQVCDRVAVLDAGRVVE 221
Cdd:COG4615 471 ALLEDRPILVFDEWAADQDPEFrrvfYTELLPELKA----RGKTVIAISHD-DRYFDLADRVLKMDYGKLVE 537
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-199 |
2.36e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 70.73 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDgrDLTALSAADlraAR 81
Cdd:TIGR03719 323 IEAENLTKAFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIG--ETVKLAYVD---QS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDigmifqhfNLLSSRTVYENVALPLELAGVKRAEIEA-TVLPLLELVGLTAQKdrYPAQISGGQKQRVGIARALASKPK 160
Cdd:TIGR03719 394 RD--------ALDPNKTVWEEISGGLDIIKLGKREIPSrAYVGRFNFKGSDQQK--KVGQLSGGERNRVHLAKTLKSGGN 463
|
170 180 190
....*....|....*....|....*....|....*....
gi 640674200 161 VLLSDEATSALDPETTRAILDLLrrinRELGLTIVLITH 199
Cdd:TIGR03719 464 VLLLDEPTNDLDVETLRALEEAL----LNFAGCAVVISH 498
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-200 |
3.18e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 67.52 E-value: 3.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLS-QRfagpqGWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaadlRA 79
Cdd:PRK13538 1 MLEARNLAcER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-----RD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQHFNLLSSR-TVYENVALPLELAGVKRAEieaTVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASK 158
Cdd:PRK13538 71 EYHQDLLYLGHQPGIKTElTALENLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 640674200 159 PKVLLSDEATSALDpetTRAILDLLRRINR--ELGLTIVLITHQ 200
Cdd:PRK13538 148 APLWILDEPFTAID---KQGVARLEALLAQhaEQGGMVILTTHQ 188
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-231 |
5.30e-13 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 70.19 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVvdgrdltalsaadlraARRDIGMIFQHFNLLSSrTVY 100
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW----------------AERSIAYVPQQAWIMNA-TVR 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVAL-----PLELAGVKR-AEIEATVLPLLElvGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PTZ00243 739 GNILFfdeedAARLADAVRvSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 175 T-TRAILDLLRriNRELGLTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPViEVFMQ 231
Cdd:PTZ00243 817 VgERVVEECFL--GALAGKTRVLATHQVHVVPRA-DYVVALGDGRVEFSGSS-ADFMR 870
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-219 |
1.47e-12 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 68.78 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTInLLTRPSEGNVVVDGRDLTALSaadLRAARRDIGMIFQHFNLLSSrTVY 100
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-LRLLSTEGEIQIDGVSWNSVT---LQTWRKAFGVIPQKVFIFSG-TFR 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVAlPLELAGvkraeiEATVLPLLELVGLTAQKDRYPAQI-----------SGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:TIGR01271 1310 KNLD-PYEQWS------DEEIWKVAEEVGLKSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILSKAKILLLDEPSA 1382
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 640674200 170 ALDPETtraiLDLLRRINREL--GLTIVLITHQMEVIKQvCDRVAVLDAGRV 219
Cdd:TIGR01271 1383 HLDPVT----LQIIRKTLKQSfsNCTVILSEHRVEALLE-CQQFLVIEGSSV 1429
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
22-219 |
5.62e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.49 E-value: 5.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 22 HDVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPSEGNVVVDGRDLTALSAADlrAARRDIGMIFQ---HFNLLSSR 97
Cdd:PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLfGAYPGRWEGEIFIDGKPVKIRNPQQ--AIAQGIAMVPEdrkRDGIVPVM 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 98 TVYENVALPL--ELAGVKR----AEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSAL 171
Cdd:PRK13549 357 GVGKNITLAAldRFTGGSRiddaAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 640674200 172 DP----ETTRAILDLLRRinrelGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:PRK13549 437 DVgakyEIYKLINQLVQQ-----GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
21-224 |
7.04e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 66.67 E-value: 7.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLT----RPSEGNVVVDGrdltaLSAADLRAARR-DIGMIFQ---HFN 92
Cdd:TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDG-----ITPEEIKKHYRgDVVYNAEtdvHFP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 93 LLssrTVYENvalpLELA-----------GVKRAEIEATVLPL-LELVGLTAQKDR-----YPAQISGGQKQRVGIARAL 155
Cdd:TIGR00956 152 HL---TVGET----LDFAarcktpqnrpdGVSREEYAKHIADVyMATYGLSHTRNTkvgndFVRGVSGGERKRVSIAEAS 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIVLITHQ-MEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQcSQDAYELFDKVIVLYEGYQIYFGP 294
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-231 |
7.18e-12 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 64.54 E-value: 7.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFAGPQGWVeaLHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSaadLRAAR 81
Cdd:cd03288 20 IKIHDLCVRYENNLKPV--LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP---LHTLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDIGMIFQ---------HFNLLSSRTVYENVAL-PLELAGVKRAeieATVLPllelVGLTAQKDRYPAQISGGQKQRVGI 151
Cdd:cd03288 95 SRLSIILQdpilfsgsiRFNLDPECKCTDDRLWeALEIAQLKNM---VKSLP----GGLDAVVTEGGENFSVGQRQLFCL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 152 ARALASKPKVLLSDEATSALDPETTrailDLLRRI------NRelglTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPV 225
Cdd:cd03288 168 ARAFVRKSSILIMDEATASIDMATE----NILQKVvmtafaDR----TVVTIAHRVSTILDA-DLVLVLSRGILVECDTP 238
|
....*.
gi 640674200 226 IEVFMQ 231
Cdd:cd03288 239 ENLLAQ 244
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
23-219 |
9.81e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 65.62 E-value: 9.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTI-NLLTRPSEGNVVVDGRDLTALSAADlrAARRDIGMI---FQHFNLLSSRT 98
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALfGAYPGKFEGNVFINGKPVDIRNPAQ--AIRAGIAMVpedRKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 VYENVALPL--ELAGVKR----AEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALD 172
Cdd:TIGR02633 356 VGKNITLSVlkSFCFKMRidaaAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 640674200 173 PETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:TIGR02633 436 VGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
21-200 |
1.09e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 63.05 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTalsaADLRAARRDIGMIFQHFNLLSSRTVY 100
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK----KDLCTYQKQLCFVGHRSGINPYLTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELAgvkraeieATVLPLLELVGLTAQKD--RYP-AQISGGQKQRVGIARALASKPKVLLSDEATSALDpetTR 177
Cdd:PRK13540 93 ENCLYDIHFS--------PGAVGITELCRLFSLEHliDYPcGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---EL 161
|
170 180
....*....|....*....|....*
gi 640674200 178 AILDLLRRI--NRELGLTIVLITHQ 200
Cdd:PRK13540 162 SLLTIITKIqeHRAKGGAVLLTSHQ 186
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
18-224 |
5.48e-11 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 60.80 E-value: 5.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 18 VEALHDVNLTIPRGEVFGIIGRSGAGKSTLV----------RTINLLTRPSEGNVVVDGRdLTALSaadlraarrDIGMi 87
Cdd:cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVneglyasgkaRLISFLPKFSRNKLIFIDQ-LQFLI---------DVGL- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 88 fqhfnllssrtvyenvalplelagvkraeieaTVLPLlelvgltaqkDRYPAQISGGQKQRVGIARALASKPK--VLLSD 165
Cdd:cd03238 77 --------------------------------GYLTL----------GQKLSTLSGGELQRVKLASELFSEPPgtLFILD 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 166 EATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQvcdrvavldAGRVVETGP 224
Cdd:cd03238 115 EPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLSS---------ADWIIDFGP 163
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-215 |
5.78e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 63.65 E-value: 5.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 27 TIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR----------DLTALSAADLRAARRDIgmifqhfnlLSS 96
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKisykpqyispDYDGTVEEFLRSANTDD---------FGS 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 97 RTVYENVALPLELAgvkraeieatvlPLLelvgltaqkDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE-- 174
Cdd:COG1245 433 SYYKTEIIKPLGLE------------KLL---------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEqr 491
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 640674200 175 --TTRAIldllRRINRELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:COG1245 492 laVAKAI----RRFAENRGKTAMVVDHDIYLIDYISDRLMVFE 530
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
21-220 |
6.86e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 63.43 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINlltrpseGNVVVDgrDLTALSAADLRAAR------RDIgmifqhfnll 94
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEVLLD--DGRIIYEQDLIVARlqqdppRNV---------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 sSRTVYENVALPL-ELAGVKRA---------------------------------EIEATVLPLLELVGLTAqkDRYPAQ 140
Cdd:PRK11147 80 -EGTVYDFVAEGIeEQAEYLKRyhdishlvetdpseknlnelaklqeqldhhnlwQLENRINEVLAQLGLDP--DAALSS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 141 ISGGQKQRVGIARALASKPKVLLSDEATSALDPETtraiLDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET----IEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-215 |
7.70e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 61.66 E-value: 7.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 27 TIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLT---ALSAADLRAARRDigMIFQHFNLLSSRTVYEN- 102
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSykpQYIKADYEGTVRD--LLSSITKDFYTHPYFKTe 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 103 VALPLELAGVKraeieatvlpllelvgltaqkDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDL 182
Cdd:cd03237 99 IAKPLQIEQIL---------------------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV 157
|
170 180 190
....*....|....*....|....*....|...
gi 640674200 183 LRRINRELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:cd03237 158 IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
22-220 |
8.19e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 63.01 E-value: 8.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 22 HDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAAD-LRAA-------RRDIGMIfqhfnl 93
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDaIRAGimlcpedRKAEGII------ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 94 lSSRTVYENVA-------LPLELAGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDE 166
Cdd:PRK11288 344 -PVHSVADNINisarrhhLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 167 ATSALDPETTRAILDLLRRInRELGLTIVLITHQ-MEVIKqVCDRVAVLDAGRVV 220
Cdd:PRK11288 423 PTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDlPEVLG-VADRIVVMREGRIA 475
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
31-223 |
2.30e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.82 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 31 GEVFGIIGRSGAGKSTLVRTI--NLLTRPSEGNVVVDGRDLTalsaadlRAARRDIGMIFQHFNLLSSRTVYENVA---- 104
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALagRIQGNNFTGTILANNRKPT-------KQILKRTGFVTQDDILYPHLTVRETLVfcsl 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 105 --LPLELAGVKRAEIEATVLPLLELV--GLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETT-RAI 179
Cdd:PLN03211 167 lrLPKSLTKQEKILVAESVISELGLTkcENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAyRLV 246
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 640674200 180 LDLLRRINRelGLTIVLITHQ-MEVIKQVCDRVAVLDAGRVVETG 223
Cdd:PLN03211 247 LTLGSLAQK--GKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
19-218 |
2.81e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.49 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 19 EALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNvvvdgrdltALSAADLRaarrdIGMIFQHFNLLSSRT 98
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGE---------ARPQPGIK-----VGYLPQEPQLDPTKT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 99 VYENV--ALPLELAGVKR------------AEIEATVLPLLELVGLTAQKD---------------RYP------AQISG 143
Cdd:TIGR03719 85 VRENVeeGVAEIKDALDRfneisakyaepdADFDKLAAEQAELQEIIDAADawdldsqleiamdalRCPpwdadvTKLSG 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 144 GQKQRVGIARALASKPKVLLSDEATSALDPETTrailDLLRRINRELGLTIVLITHQMEVIKQVCDRVAVLDAGR 218
Cdd:TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESV----AWLERHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGR 235
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-309 |
3.42e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.46 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltalsaadlraarrdIGMIFQhFNLLSSRTVY 100
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------------ISFSPQ-TSWIMPGTIK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELAGVK-RAEIEATVLPllELVGLTAQKDRYP-----AQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:TIGR01271 505 DNIIFGLSYDEYRyTSVIKACQLE--EDIALFPEKDKTVlgeggITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 175 TTRAILD--LLRRINRElglTIVLITHQMEVIKQVcDRVAVLDAGRVVETGPVIEV-FMQPhhEVTRALIGDViaqelpp 251
Cdd:TIGR01271 583 TEKEIFEscLCKLMSNK---TRILVTSKLEHLKKA-DKILLLHEGVCYFYGTFSELqAKRP--DFSSLLLGLE------- 649
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 252 ALKARVAERLKSgrghllrlaftgsgvdqpILSETIRRYELDFNILHGQIDEIQGQAF 309
Cdd:TIGR01271 650 AFDNFSAERRNS------------------ILTETLRRVSIDGDSTVFSGPETIKQSF 689
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-215 |
4.02e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.98 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 27 TIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGR------------DLTAlsAADLRAARRDIGmifqhfnll 94
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKisykpqyikpdyDGTV--EDLLRSITDDLG--------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 sSRTVYENVALPLELAgvkraeieatvlPLLelvgltaqkDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PRK13409 430 -SSYYKSEIIKPLQLE------------RLL---------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 640674200 175 ----TTRAIldllRRINRELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:PRK13409 488 qrlaVAKAI----RRIAEEREATALVVDHDIYMIDYISDRLMVFE 528
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
15-225 |
4.25e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.28 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 15 QGWVealhdvnltIPrGEVFGIIGRSGAGKSTLvrtINLLTRPSEGNVVVDGRDLTALSAADLRAARRdIGMIFQHFNLL 94
Cdd:TIGR00956 783 DGWV---------KP-GTLTALMGASGAGKTTL---LNVLAERVTTGVITGGDRLVNGRPLDSSFQRS-IGYVQQQDLHL 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 95 SSRTVYENVALPLEL---AGVKRAEIEATVLPLLELVGLTAQKDRYPAQISGG----QKQRVGIARALASKPKVLL-SDE 166
Cdd:TIGR00956 849 PTSTVRESLRFSAYLrqpKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGlnveQRKRLTIGVELVAKPKLLLfLDE 928
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 167 ATSALDPETTRAILDLLRRINRElGLTIVLITHQME-VIKQVCDRVAVLD-AGRVVETGPV 225
Cdd:TIGR00956 929 PTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSaILFEEFDRLLLLQkGGQTVYFGDL 988
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-183 |
5.27e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.52 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLSQRFaGPQGWVEalhDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVdGrDLTALSAADlraAR 81
Cdd:PRK11819 325 IEAENLSKSF-GDRLLID---DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-G-ETVKLAYVD---QS 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 82 RDigmifqhfNLLSSRTVYENVALPLELAGVKRAEIEA-TVLPLLELVGLTAQKdrYPAQISGGQKQRVGIARALASKPK 160
Cdd:PRK11819 396 RD--------ALDPNKTVWEEISGGLDIIKVGNREIPSrAYVGRFNFKGGDQQK--KVGVLSGGERNRLHLAKTLKQGGN 465
|
170 180
....*....|....*....|...
gi 640674200 161 VLLSDEATSALDPETTRAILDLL 183
Cdd:PRK11819 466 VLLLDEPTNDLDVETLRALEEAL 488
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
23-205 |
8.20e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 60.15 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 23 DVNLTIPRGEVFGIIGRSGAGKSTLVRTIN--------LLTRPSEGNVV-VDGRDLTALSAadlraarrdigmifqhfnl 93
Cdd:TIGR00954 470 SLSFEVPSGNNLLICGPNGCGKSSLFRILGelwpvyggRLTKPAKGKLFyVPQRPYMTLGT------------------- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 94 LSSRTVYENVALPLELAGVKRAEIEAtVLPLLEL-------VGLTAQKDrYPAQISGGQKQRVGIARALASKPKVLLSDE 166
Cdd:TIGR00954 531 LRDQIIYPDSSEDMKRRGLSDKDLEQ-ILDNVQLthilereGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
|
170 180 190
....*....|....*....|....*....|....*....
gi 640674200 167 ATSALDPETTRAILDLLrrinRELGLTIVLITHQMEVIK 205
Cdd:TIGR00954 609 CTSAVSVDVEGYMYRLC----REFGITLFSVSHRKSLWK 643
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-223 |
9.08e-10 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 58.26 E-value: 9.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTinLLTRP----SEGNVVVDGRDLTALSAAD 76
Cdd:PRK09580 1 MLSIKDLHVSVEDK----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSAT--LAGREdyevTGGTVEFKGKDLLELSPED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 77 lrAARRDIGMIFQHfnllssrtvyenvalPLELAGVKRAEIEATVLPLLELVGLTAQKDRY---------------PAQI 141
Cdd:PRK09580 75 --RAGEGIFMAFQY---------------PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFdfqdlmeekiallkmPEDL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 142 ---------SGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAI---LDLLRRINRelglTIVLITHQMEVIKQV-C 208
Cdd:PRK09580 138 ltrsvnvgfSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVadgVNSLRDGKR----SFIIVTHYQRILDYIkP 213
|
250
....*....|....*
gi 640674200 209 DRVAVLDAGRVVETG 223
Cdd:PRK09580 214 DYVHVLYQGRIVKSG 228
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
21-217 |
6.83e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 56.02 E-value: 6.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRdltalsaadlraarrdIGMIFQhFNLLSSRTVY 100
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------------ISFSSQ-FSWIMPGTIK 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLE------LAGVKRAEIEATVLPLlelvgltAQKDRYP-----AQISGGQKQRVGIARALASKPKVLLSDEATS 169
Cdd:cd03291 116 ENIIFGVSydeyryKSVVKACQLEEDITKF-------PEKDNTVlgeggITLSGGQRARISLARAVYKDADLYLLDSPFG 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 640674200 170 ALDPETTRAILD-----LLRRINRelgltiVLITHQMEVIKQVcDRVAVLDAG 217
Cdd:cd03291 189 YLDVFTEKEIFEscvckLMANKTR------ILVTSKMEHLKKA-DKILILHEG 234
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-222 |
7.14e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.05 E-value: 7.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 1 MIEIRNLSqrfAGPQgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDL---TALSA--- 74
Cdd:PRK10982 250 ILEVRNLT---SLRQ---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKInnhNANEAinh 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 75 --ADLRAARRDIGmIFQH----FN-LLSSRTVYENvalPLELAGVKRAEIEATVLpllelvgLTAQKDRYPAQ------I 141
Cdd:PRK10982 324 gfALVTEERRSTG-IYAYldigFNsLISNIRNYKN---KVGLLDNSRMKSDTQWV-------IDSMRVKTPGHrtqigsL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 142 SGGQKQRVGIARALASKPKVLLSDEATSALDP----ETTRAILDLLRRinrelGLTIVLITHQMEVIKQVCDRVAVLDAG 217
Cdd:PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVgakfEIYQLIAELAKK-----DKGIIIISSEMPELLGITDRILVMSNG 467
|
....*...
gi 640674200 218 RV---VET 222
Cdd:PRK10982 468 LVagiVDT 475
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
21-224 |
8.90e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.56 E-value: 8.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRaarRDIGMIFQHFN--LLS--- 95
Cdd:PRK10938 19 LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ---KLVSDEWQRNNtdMLSpge 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 96 ---SRTVYENValpleLAGVKRaeiEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALD 172
Cdd:PRK10938 96 ddtGRTTAEII-----QDEVKD---PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 640674200 173 PETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVVETGP 224
Cdd:PRK10938 168 VASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGE 218
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-204 |
1.15e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 30 RGEVFGIIGRSGAGKSTLVRTI-NLLTRPSEGNVVVDGRDLTALSAADLRAARRDIGmifqhfnllssrtvyenvalple 108
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALaRELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGK----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 109 lagvkraeieatvlpllelvgltaqkdryPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLR---- 184
Cdd:smart00382 58 -----------------------------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEElrll 108
|
170 180
....*....|....*....|.
gi 640674200 185 -RINRELGLTIVLITHQMEVI 204
Cdd:smart00382 109 lLLKSEKNLTVILTTNDEKDL 129
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
31-174 |
3.38e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 53.31 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 31 GEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALSAADLRAARRDIGMIFQHFNLLssrtvyENVALPLELA 110
Cdd:PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL------ENLHFLCGLH 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 640674200 111 GVKRAEIEATVLpllELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPE 174
Cdd:PRK13543 111 GRRAKQMPGSAL---AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-214 |
4.09e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.52 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 26 LTIPR-GEVFGIIGRSGAGKSTLVRTI------NL--LTRPSEGNVVVD---GRDL----TALSAADLRAARRDigmifQ 89
Cdd:cd03236 20 LPVPReGQVLGLVGPNGIGKSTALKILagklkpNLgkFDDPPDWDEILDefrGSELqnyfTKLLEGDVKVIVKP-----Q 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 90 HFNLLSsRTVYENVALPLElagvKRAEIEA--TVLPLLELVGLTaqkDRYPAQISGGQKQRVGIARALASKPKVLLSDEA 167
Cdd:cd03236 95 YVDLIP-KAVKGKVGELLK----KKDERGKldELVDQLELRHVL---DRNIDQLSGGELQRVAIAAALARDADFYFFDEP 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 640674200 168 TSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVL 214
Cdd:cd03236 167 SSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCL 212
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
21-205 |
6.26e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 52.18 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDGRDLTALsaadlraARRDIGMIFQHFNLLSSRTVY 100
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-------AKPYCTYIGHNLGLKLEMTVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENVALPLELagvkrAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPEtTRAIL 180
Cdd:PRK13541 89 ENLKFWSEI-----YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLL 162
|
170 180
....*....|....*....|....*
gi 640674200 181 DLLRRINRELGLTIVLITHQMEVIK 205
Cdd:PRK13541 163 NNLIVMKANSGGIVLLSSHLESSIK 187
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
21-224 |
1.85e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 51.10 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLV-RTINlltrpSEGNVvvdgRDLTALSAAdlraARRDIGM------------- 86
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAfDTIY-----AEGQR----RYVESLSAY----ARQFLGQmdkpdvdsiegls 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 87 ----IFQHFNLLSSR-------TVYENVALPLELAGVKRAeieatvLPLLELVGLT-AQKDRYPAQISGGQKQRVGIARA 154
Cdd:cd03270 78 paiaIDQKTTSRNPRstvgtvtEIYDYLRLLFARVGIRER------LGFLVDVGLGyLTLSRSAPTLSGGEAQRIRLATQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 640674200 155 LASKPKVLLS--DEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQvcdrvavldAGRVVETGP 224
Cdd:cd03270 152 IGSGLTGVLYvlDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRA---------ADHVIDIGP 213
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
31-217 |
2.12e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 52.20 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 31 GEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVD-GRDLTALSAaDLRAarrdigmiFQHFNLLSsrTV---------- 99
Cdd:PRK15064 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDpNERLGKLRQ-DQFA--------FEEFTVLD--TVimghtelwev 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 100 -------YenvALP--LELAGVKRAEIEATVLpllELVGLTA----------------QKDRYPAQISGGQKQRVGIARA 154
Cdd:PRK15064 96 kqerdriY---ALPemSEEDGMKVADLEVKFA---EMDGYTAearagelllgvgipeeQHYGLMSEVAPGWKLRVLLAQA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRelglTIVLITHQMEVIKQVCDRVAVLDAG 217
Cdd:PRK15064 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS----TMIIISHDRHFLNSVCTHMADLDYG 228
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
21-199 |
4.43e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.27 E-value: 4.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVdgrdltalsAADLRaarrdIGMIFQHFNLLSSRTVY 100
Cdd:PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP---------APGIK-----VGYLPQEPQLDPEKTVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 101 ENV--ALPLELAGVKR--------AEIEATVLPLLELVG-LTAQKD------------------RYP------AQISGGQ 145
Cdd:PRK11819 89 ENVeeGVAEVKAALDRfneiyaayAEPDADFDALAAEQGeLQEIIDaadawdldsqleiamdalRCPpwdakvTKLSGGE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 640674200 146 KQRVGIARALASKPKVLLSDEATSALDPETTrailDLLRRINRELGLTIVLITH 199
Cdd:PRK11819 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAESV----AWLEQFLHDYPGTVVAVTH 218
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
25-172 |
1.39e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 49.81 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 25 NLTIPR-GEVFGIIGRSGAGKSTLVRTINLLTRPSEGNV--------VVD---GRDL----TALSAADLRAARRDigmif 88
Cdd:PRK13409 92 GLPIPKeGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdeVLKrfrGTELqnyfKKLYNGEIKVVHKP----- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 89 QHFNLLSsRTVYENVAlplELagVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEAT 168
Cdd:PRK13409 167 QYVDLIP-KVFKGKVR---EL--LKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240
|
....
gi 640674200 169 SALD 172
Cdd:PRK13409 241 SYLD 244
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
14-219 |
2.10e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 49.47 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 14 PQGWVEALHDVNLTIPRGEV------FGI--------IGRSGAGKSTLVRTINLLTRPSEGNVvvdgrdltalsaadLRA 79
Cdd:PLN03073 504 PGPPIISFSDASFGYPGGPLlfknlnFGIdldsriamVGPNGIGKSTILKLISGELQPSSGTV--------------FRS 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 80 ARRDIGMIFQH----FNLLSSRTVYENVALPlelaGVKRAEIEATvLPLLELVGLTAQKDRYpaQISGGQKQRVGIARAL 155
Cdd:PLN03073 570 AKVRMAVFSQHhvdgLDLSSNPLLYMMRCFP----GVPEQKLRAH-LGSFGVTGNLALQPMY--TLSGGQKSRVAFAKIT 642
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640674200 156 ASKPKVLLSDEATSALDPETTRAILDllrrinrelGLT-----IVLITHQMEVIKQVCDRVAVLDAGRV 219
Cdd:PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQ---------GLVlfqggVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
142-224 |
2.17e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 48.38 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 142 SGGQKQRVGIARAL---ASKPKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKqVCDRVAVL---- 214
Cdd:cd03271 171 SGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL-VDKGNTVVVIEHNLDVIK-CADWIIDLgpeg 248
|
90
....*....|..
gi 640674200 215 --DAGRVVETGP 224
Cdd:cd03271 249 gdGGGQVVASGT 260
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
25-172 |
4.50e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 48.24 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 25 NLTIPR-GEVFGIIGRSGAGKSTLVRTINLLTRPSEGNV--------VVD---GRDL----TALSAADLRAARRDigmif 88
Cdd:COG1245 92 GLPVPKkGKVTGILGPNGIGKSTALKILSGELKPNLGDYdeepswdeVLKrfrGTELqdyfKKLANGEIKVAHKP----- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 89 QHFNLLSsRTVYENVAlplELagVKRAEIEATVLPLLELVGLTAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEAT 168
Cdd:COG1245 167 QYVDLIP-KVFKGTVR---EL--LEKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPS 240
|
....
gi 640674200 169 SALD 172
Cdd:COG1245 241 SYLD 244
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
122-224 |
5.41e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.09 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 122 LPLLELVGLTAQKDRYPA-QISGGQKQRVGIARALASK---PKVLLSDEATSALDPETTRAILDLLRRInRELGLTIVLI 197
Cdd:TIGR00630 810 LQTLCDVGLGYIRLGQPAtTLSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRL-VDKGNTVVVI 888
|
90 100
....*....|....*....|....*..
gi 640674200 198 THQMEVIKQvcdrvavldAGRVVETGP 224
Cdd:TIGR00630 889 EHNLDVIKT---------ADYIIDLGP 906
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
109-215 |
1.69e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.87 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 109 LAGVKRAEIEATVLPLLELvgltAQKDRYpAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINR 188
Cdd:cd03222 45 LAGQLIPNGDNDEWDGITP----VYKPQY-IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE 119
|
90 100
....*....|....*....|....*..
gi 640674200 189 ELGLTIVLITHQMEVIKQVCDRVAVLD 215
Cdd:cd03222 120 EGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
26-205 |
2.53e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.89 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 26 LTIPRGEVFGIIGRSGAGKSTLVRTINLLTrpsegnvvvdgrdltalsaadlraarrdiGMIFQHFNLLSSRTVYENVAL 105
Cdd:cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLAL-----------------------------GGAQSATRRRSGVKAGCIVAA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 106 PlelagvkraEIEATVLPLlelvgltaqkdrypaQISGGQKQRVGIARALA-----SKPKVLLsDEATSALDPETTRAIL 180
Cdd:cd03227 67 V---------SAELIFTRL---------------QLSGGEKELSALALILAlaslkPRPLYIL-DEIDRGLDPRDGQALA 121
|
170 180
....*....|....*....|....*
gi 640674200 181 DLLRRiNRELGLTIVLITHQMEVIK 205
Cdd:cd03227 122 EAILE-HLVKGAQVIVITHLPELAE 145
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
21-190 |
4.15e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.01 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLvrtINLLT--RPS--EGNVVVDGRDltalsaadlRAARRDIGMIFQHFNLLSS 96
Cdd:PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTL---LSLITgdHPQgySNDLTLFGRR---------RGSGETIWDIKKHIGYVSS 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 97 R--------TVYENVALP--LELAGVKRAEIEAT---VLPLLELVGLTAQKDRYPAQ-ISGGQKQRVGIARALASKPKVL 162
Cdd:PRK10938 344 SlhldyrvsTSVRNVILSgfFDSIGIYQAVSDRQqklAQQWLDILGIDKRTADAPFHsLSWGQQRLALIVRALVKHPTLL 423
|
170 180
....*....|....*....|....*...
gi 640674200 163 LSDEATSALDPettraildllrrINREL 190
Cdd:PRK10938 424 ILDEPLQGLDP------------LNRQL 439
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
16-172 |
6.13e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.85 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 16 GWVEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI----------NLLTRPSEGNVVvdGRDLTALSA----------- 74
Cdd:PLN03073 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMamhaidgipkNCQILHVEQEVV--GDDTTALQCvlntdiertql 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 75 ----ADLRAARRDIGMIFQHFN------------LLSSRtvYENVALPLELAGVKRAEIEATVLplleLVGLTAQKD--- 135
Cdd:PLN03073 266 leeeAQLVAQQRELEFETETGKgkgankdgvdkdAVSQR--LEEIYKRLELIDAYTAEARAASI----LAGLSFTPEmqv 339
|
170 180 190
....*....|....*....|....*....|....*..
gi 640674200 136 RYPAQISGGQKQRVGIARALASKPKVLLSDEATSALD 172
Cdd:PLN03073 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
21-224 |
9.06e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.43 E-value: 9.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKS-----TLVRTI-NLLTRPSEGNVVVDG----------RDLTALSAA--------- 75
Cdd:PRK00635 611 LKDLTISLPLGRLTVVTGVSGSGKSslindTLVPAVeEFIEQGFCSNLSIQWgaisrlvhitRDLPGRSQRsipltyika 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 76 --DLR------AARRDIGMIFQHFNL------------LSSRTVYEN-VALPLELAGVKRAEIEA--------TVLPLLE 126
Cdd:PRK00635 691 fdDLRelfaeqPRSKRLGLTKSHFSFntplgacaecqgLGSITTTDNrTSIPCPSCLGKRFLPQVlevrykgkNIADILE 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 127 LVGLTAQK--------------------DRYP-----AQISGGQKQRVGIARALAS---KPKVLLSDEATSALDPETTRA 178
Cdd:PRK00635 771 MTAYEAEKffldepsihekihalcslglDYLPlgrplSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKA 850
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 640674200 179 ILDLLRRINrELGLTIVLITHQMEVIKqVCDrvavldagRVVETGP 224
Cdd:PRK00635 851 LIYVLQSLT-HQGHTVVIIEHNMHVVK-VAD--------YVLELGP 886
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
125-229 |
1.05e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 44.07 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 125 LELVGLTAQKDRYPAQ-----ISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLRRINRELGLTIV--LI 197
Cdd:PLN03140 316 LKILGLDICKDTIVGDemirgISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLmsLL 395
|
90 100 110
....*....|....*....|....*....|....*
gi 640674200 198 THQMEVIkQVCDRVAVLDAGRVVETGP---VIEVF 229
Cdd:PLN03140 396 QPAPETF-DLFDDIILLSEGQIVYQGPrdhILEFF 429
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-199 |
2.35e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 41.53 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 2 IEIRNLsQRFAGPQgwvealhdvNLTIPRGeVFGIIGRSGAGKSTLVRTI----------------NLLTRPSEGNVV-- 63
Cdd:COG0419 5 LRLENF-RSYRDTE---------TIDFDDG-LNLIVGPNGAGKSTILEAIryalygkarsrsklrsDLINVGSEEASVel 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 64 ---VDGRDLTAL-----SAADLRAARRDIG-MIFQHFNLlssrTVYENVAlplELAGVKRAEIEATVLPLLELVGLTAQ- 133
Cdd:COG0419 74 efeHGGKRYRIErrqgeFAEFLEAKPSERKeALKRLLGL----EIYEELK---ERLKELEEALESALEELAELQKLKQEi 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 134 -----KDRYPAQISGGQKQRVGIARALAskpkvLLSDeaTSALDPETTRAILDLLRRinrelgltIVLITH 199
Cdd:COG0419 147 laqlsGLDPIETLSGGERLRLALADLLS-----LILD--FGSLDEERLERLLDALEE--------LAIITH 202
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
21-220 |
2.81e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 42.47 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 21 LHDVNLTIPRGEVFGIIGRSGAGKSTLVRTI--NLLTRPSEGNVVVDGRDltalsaADLRAARRDI--GMIF-----QHF 91
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVfgRSYGRNISGTVFKDGKE------VDVSTVSDAIdaGLAYvtedrKGY 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 92 NLLSSRTVYENVALPlELAGVKRAEI-----EATVlpllelvgltAQKDRYPAQI------------SGGQKQRVGIARA 154
Cdd:NF040905 350 GLNLIDDIKRNITLA-NLGKVSRRGVideneEIKV----------AEEYRKKMNIktpsvfqkvgnlSGGNQQKVVLSKW 418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640674200 155 LASKPKVLLSDEATSALDPETTRAILDLLRRINRElGLTIVLITHQMEVIKQVCDRVAVLDAGRVV 220
Cdd:NF040905 419 LFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
56-271 |
3.26e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.69 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 56 RPSEGNVVVDGRDLTALSAADLRAArrdigMIFqhFNLLSSRTVYENVALPLELAGVKRAEIEATV-LPLLELvgltaqk 134
Cdd:TIGR00630 417 KPEALAVTVGGKSIADVSELSIREA-----HEF--FNQLTLTPEEKKIAEEVLKEIRERLGFLIDVgLDYLSL------- 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 135 DRYPAQISGGQKQRVGIARALASK-PKVL-LSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKqVCDRV- 211
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQRDNRRLINTLKRL-RDLGNTLIVVEHDEDTIR-AADYVi 560
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640674200 212 -----AVLDAGRVVETGPVIEVfMQPHHEVTRALIGDVIAQELPpalkarvAERLKsGRGHLLRL 271
Cdd:TIGR00630 561 digpgAGEHGGEVVASGTPEEI-LANPDSLTGQYLSGRKKIEVP-------AERRP-GNGKFLTL 616
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-199 |
6.67e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 41.47 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 3 EIRNLSQRFAGPQgwveALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVVVDgrdlTALSAADLRAARR 82
Cdd:PRK11147 321 EMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TKLEVAYFDQHRA 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640674200 83 DigmifqhfnLLSSRTVYENVA---LPLELAGVKRAeieatVLPLLELVGLTAQKDRYPAQ-ISGGQKQRVGIARALASK 158
Cdd:PRK11147 393 E---------LDPEKTVMDNLAegkQEVMVNGRPRH-----VLGYLQDFLFHPKRAMTPVKaLSGGERNRLLLARLFLKP 458
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 640674200 159 PKVLLSDEATSALDPETtraiLDLLRRINRELGLTIVLITH 199
Cdd:PRK11147 459 SNLLILDEPTNDLDVET----LELLEELLDSYQGTVLLVSH 495
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
142-206 |
7.16e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 41.60 E-value: 7.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 142 SGGQKQRVGIARALASKP--KVL-LSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQ 206
Cdd:PRK00349 832 SGGEAQRVKLAKELSKRStgKTLyILDEPTTGLHFEDIRKLLEVLHRL-VDKGNTVVVIEHNLDVIKT 898
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
142-206 |
9.78e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.17 E-value: 9.78e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 640674200 142 SGGQKQRVGIARALA--SKPKVL-LSDEATSALDPETTRAILDLLRRInRELGLTIVLITHQMEVIKQ 206
Cdd:COG0178 828 SGGEAQRVKLASELSkrSTGKTLyILDEPTTGLHFHDIRKLLEVLHRL-VDKGNTVVVIEHNLDVIKT 894
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-62 |
6.64e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 38.33 E-value: 6.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640674200 2 IEIRNLSQRFAGPqgwvEALHDVNLTIPRGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNV 62
Cdd:PRK15064 320 LEVENLTKGFDNG----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
220-266 |
6.71e-03 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 34.68 E-value: 6.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 640674200 220 VETGPVIEVFMQPHHEVTRALIGDVIA----QELPPALKARVAERLKSGRG 266
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRldppKRPLYTIPGNVPSLLELPEG 51
|
|
| |
