NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|640677281|ref|WP_025101974|]
View 

MULTISPECIES: DUF2231 domain-containing protein [Burkholderia]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2231 super family cl01730
Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial ...
 19-130 3.83e-04

Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial proteins, has no known function. It has similarity to pfam01292 suggesting it is a haem-binding cytochrome.


The actual alignment was detected with superfamily member pfam09990:

Pssm-ID: 470316  Cd Length: 139  Bit Score: 38.01  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640677281   19 LLNPIPYGLFVGTLIFDILYANTANVLWAKSAAWLVTIGLVIAIIPRLLNLGHVWFASR-QAVLPVERLDFWLNLVGIVA 97
Cdd:pfam09990   7 MLVHFPIALLIAALLFDIAYALTGRPFWARVGWWNLGAGAIGGFLAAAAGLFELLLAEPiRAALGTALWHGVGGVLLLAL 86

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 640677281   98 AILNAFVHSRDAYAIVPEN---VILSVITVALLGIA 130
Cdd:pfam09990  87 ALVNWLWRGADRTRAVLQVpwgLALSLVTVVLVGVQ 122
 
Name Accession Description Interval E-value
DUF2231 pfam09990
Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial ...
 19-130 3.83e-04

Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial proteins, has no known function. It has similarity to pfam01292 suggesting it is a haem-binding cytochrome.


Pssm-ID: 462936  Cd Length: 139  Bit Score: 38.01  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640677281   19 LLNPIPYGLFVGTLIFDILYANTANVLWAKSAAWLVTIGLVIAIIPRLLNLGHVWFASR-QAVLPVERLDFWLNLVGIVA 97
Cdd:pfam09990   7 MLVHFPIALLIAALLFDIAYALTGRPFWARVGWWNLGAGAIGGFLAAAAGLFELLLAEPiRAALGTALWHGVGGVLLLAL 86

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 640677281   98 AILNAFVHSRDAYAIVPEN---VILSVITVALLGIA 130
Cdd:pfam09990  87 ALVNWLWRGADRTRAVLQVpwgLALSLVTVVLVGVQ 122
 
Name Accession Description Interval E-value
DUF2231 pfam09990
Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial ...
 19-130 3.83e-04

Predicted membrane protein (DUF2231); This domain, found in various hypothetical bacterial proteins, has no known function. It has similarity to pfam01292 suggesting it is a haem-binding cytochrome.


Pssm-ID: 462936  Cd Length: 139  Bit Score: 38.01  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640677281   19 LLNPIPYGLFVGTLIFDILYANTANVLWAKSAAWLVTIGLVIAIIPRLLNLGHVWFASR-QAVLPVERLDFWLNLVGIVA 97
Cdd:pfam09990   7 MLVHFPIALLIAALLFDIAYALTGRPFWARVGWWNLGAGAIGGFLAAAAGLFELLLAEPiRAALGTALWHGVGGVLLLAL 86

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 640677281   98 AILNAFVHSRDAYAIVPEN---VILSVITVALLGIA 130
Cdd:pfam09990  87 ALVNWLWRGADRTRAVLQVpwgLALSLVTVVLVGVQ 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH