|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
4-430 |
0e+00 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 786.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 4 IKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYENWQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQL 83
Cdd:PRK08149 1 LRLLQRLAHPLRIQGPIIEAELPDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 84 TIQINDALLGSVLNASGEIMERFV-PDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASA 162
Cdd:PRK08149 81 SVWVGEALLGAVLDPTGKIVERFDaPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 163 GCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRG 242
Cdd:PRK08149 161 GCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 243 KRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSI 322
Cdd:PRK08149 241 KRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 323 LDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRP 402
Cdd:PRK08149 321 LDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRP 400
|
410 420
....*....|....*....|....*...
gi 643607156 403 ELTKWLKQSLDEKMPMHETLKELERIVR 430
Cdd:PRK08149 401 ALEAFLKQDVAEKSSFSDTLERLNEFAA 428
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
1-429 |
0e+00 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 605.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 1 MENIKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTG 80
Cdd:COG1157 11 LEELPPVRVSGRVTRVVGLLIEAVGPDASIGELCEIE---TADGRPVLAEVVGFRGDRVLLMPLGDLEGISPGARVVPTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 81 EQLTIQINDALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFA 160
Cdd:COG1157 88 RPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEE---RRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQRIGIFA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 161 SAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRD 240
Cdd:COG1157 165 GSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEDDLGEEGLARSVVVVATSDEPPLMRLRAAYTATAIAEYFRD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 241 RGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIK 320
Cdd:COG1157 245 QGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRLLERAGNGGKGSITAFYTVLVEGDDMNDPIADAVR 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 321 SILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNV 400
Cdd:COG1157 325 GILDGHIVLSRKLAERGHYPAIDVLASISRVMPDIVSPEHRALARRLRRLLARYEENEDLIRIGAYQPGSDPELDEAIAL 404
|
410 420
....*....|....*....|....*....
gi 643607156 401 RPELTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:COG1157 405 IPAIEAFLRQGMDERVSFEESLAQLAELL 433
|
|
| III_secr_ATP |
TIGR02546 |
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and ... |
16-430 |
0e+00 |
|
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274191 [Multi-domain] Cd Length: 422 Bit Score: 568.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 16 INGSLIEAALDDVSVGEICEIyENWQASkrIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSV 95
Cdd:TIGR02546 12 VSGTLLKAVLPGARVGELCLI-RRRDPS--QLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 96 LNASGEIMERFVPdVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVN 175
Cdd:TIGR02546 89 LDGFGRPLDGKGE-LPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIAR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 176 NTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRY 255
Cdd:TIGR02546 168 GASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRF 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 256 ARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAG 335
Cdd:TIGR02546 248 ARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAE 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 336 QGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEK 415
Cdd:TIGR02546 328 RNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTDEY 407
|
410
....*....|....*
gi 643607156 416 MPMHETLKELERIVR 430
Cdd:TIGR02546 408 SPYEETLEQLHALVA 422
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
15-425 |
2.14e-160 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 458.09 E-value: 2.14e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 15 SINGSLIEAALDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGS 94
Cdd:TIGR03496 5 RVVGLVLEAVGLRAPVGSRCEIE---SSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLGR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 95 VLNASGEIMERFVPdvpEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLV 174
Cdd:TIGR03496 82 VIDGLGRPLDGKGP---LDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 175 NNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTR 254
Cdd:TIGR03496 159 RYTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 255 YARALRDMKLAAGEPPARRGYPASVFDSLPRLLER--PGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRK 332
Cdd:TIGR03496 239 FAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERagNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 333 LAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSL 412
Cdd:TIGR03496 319 LAEQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGM 398
|
410
....*....|...
gi 643607156 413 DEKMPMHETLKEL 425
Cdd:TIGR03496 399 RERASFEESLEAL 411
|
|
| FliI_clade2 |
TIGR03497 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
14-429 |
6.41e-156 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274608 [Multi-domain] Cd Length: 413 Bit Score: 447.14 E-value: 6.41e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 14 HSINGSLIEAALDDVSVGEICEIYENwqASKRIaRAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLG 93
Cdd:TIGR03497 4 TRVIGLTIESKGPKASIGELCSILTK--GGKPV-LAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 94 SVLNASGEIMERFVPDVPEEKgqrRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHML 173
Cdd:TIGR03497 81 RVLDGLGRPLDGEGPIIGEEP---YPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 174 VNNTEADVFVIGLIGERGREVTE------CAESLKKSVnaercvLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVL 247
Cdd:TIGR03497 158 ARNAKADINVIALIGERGREVRDfiekdlGEEGLKRSV------VVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 248 FIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHI 327
Cdd:TIGR03497 232 MMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 328 YLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKW 407
Cdd:TIGR03497 312 VLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSF 391
|
410 420
....*....|....*....|..
gi 643607156 408 LKQSLDEKMPMHETLKELERIV 429
Cdd:TIGR03497 392 LKQGIDEKFTFEETVQLLKELL 413
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
18-430 |
6.36e-150 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 432.64 E-value: 6.36e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 18 GSLIEAALDDVSVGEICEIYENWQasKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLN 97
Cdd:PRK06936 32 GTILKAVVPGVRIGELCYLRNPDN--SLSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 98 ASGEIMErfvPDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNT 177
Cdd:PRK06936 110 GLGQPFD---GGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 178 EADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYAR 257
Cdd:PRK06936 187 EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFAR 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 258 ALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQG 337
Cdd:PRK06936 267 AQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAAN 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 338 HYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMP 417
Cdd:PRK06936 347 HYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHELSH 426
|
410
....*....|...
gi 643607156 418 MHETLKELERIVR 430
Cdd:PRK06936 427 FNETLNLLETLTQ 439
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
1-430 |
7.78e-149 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 429.87 E-value: 7.78e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 1 MENIKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYEnwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTG 80
Cdd:TIGR01026 15 EMDLRLVKRVGRVTKVKGLLIEAVGPQASVGDLCLIER--RGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 81 EQLTIQINDALLGSVLNASGE-IMERFVPDVPEEKGQrrLIDAlPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIF 159
Cdd:TIGR01026 93 EGLSIKVGDGLLGRVLDGLGKpIDGKGKFLDNVETEG--LITA-PINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIF 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 160 ASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFR 239
Cdd:TIGR01026 170 AGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFR 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 240 DRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEI 319
Cdd:TIGR01026 250 DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 320 KSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMN 399
Cdd:TIGR01026 330 RGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAIA 409
|
410 420 430
....*....|....*....|....*....|.
gi 643607156 400 VRPELTKWLKQSLDEKMPMHETLKELERIVR 430
Cdd:TIGR01026 410 KYPKLERFLKQGINEKVNFEESLQQLEEIFR 440
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
16-429 |
9.55e-145 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 419.60 E-value: 9.55e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 16 INGSLIEAALDDVSVGEICEIyenwqaSKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSV 95
Cdd:PRK06820 36 IGPTLLRASLPGVAQGELCRI------EPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 96 LNASGEIMErfvpDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVN 175
Cdd:PRK06820 110 LDGLGAPID----GGPPLTGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 176 NTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRY 255
Cdd:PRK06820 186 DSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRY 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 256 ARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAG 335
Cdd:PRK06820 266 ARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAG 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 336 QGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEK 415
Cdd:PRK06820 346 AGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHSET 425
|
410
....*....|....
gi 643607156 416 MPMHETLKELERIV 429
Cdd:PRK06820 426 AHLETTLEHLAQVV 439
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
84-351 |
1.77e-140 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 401.94 E-value: 1.77e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 84 TIQINDALLGSVLNASGE-IMERFVPDVPEEKGqrrlIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASA 162
Cdd:cd01136 1 SIPVGDGLLGRVIDALGEpLDGKGLPDEPERRP----LIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 163 GCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRG 242
Cdd:cd01136 77 GVGKSTLLGMIARNTDADVNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 243 KRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSI 322
Cdd:cd01136 157 KKVLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFALLPRLLERAGNGEKGSITAFYTVLVEGDDFNDPIADEVRSI 236
|
250 260
....*....|....*....|....*....
gi 643607156 323 LDGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:cd01136 237 LDGHIVLSRRLAERGHYPAIDVLASISRV 265
|
|
| FliI_clade3 |
TIGR03498 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
16-429 |
1.24e-137 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Pssm-ID: 163293 [Multi-domain] Cd Length: 418 Bit Score: 400.53 E-value: 1.24e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 16 INGSLIEAA--LDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLG 93
Cdd:TIGR03498 6 VTGLLIEVRglSRAVRLGDRCAIR---ARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 94 SVLNASGEIMERFVPDVPEEKgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHML 173
Cdd:TIGR03498 83 RVINALGEPIDGKGPLPQGER--RYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 174 VNNTEADVFVIGLIGERGREVTE------CAESLKKSVnaercvLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVL 247
Cdd:TIGR03498 161 ARNTDADVVVIALVGERGREVREfleddlGEEGLKRSV------VVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 248 FIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGP--TKKGSITAFYTVLLEGEDESDPLGDEIKSILDG 325
Cdd:TIGR03498 235 LMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPgaEGKGSITGIFTVLVDGDDHNEPVADAVRGILDG 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 326 HIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELT 405
Cdd:TIGR03498 315 HIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIY 394
|
410 420
....*....|....*....|....
gi 643607156 406 KWLKQSLDEKMPMHETLKELERIV 429
Cdd:TIGR03498 395 EFLTQGPDEPTSLQDPFADLAAIL 418
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
18-429 |
2.26e-134 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 392.93 E-value: 2.26e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 18 GSLIEAALDDVSVGEICEIYENWQASKRIaRAQVVGFRNGKTLLnlignsVGLTRTAVLKP------TGEQLTIQINDAL 91
Cdd:PRK07721 27 GLMIESKGPESSIGDVCYIHTKGGGDKAI-KAEVVGFKDEHVLL------MPYTEVAEIAPgclveaTGKPLEVKVGSGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 92 LGSVLNASGEIMErfvpDVPEEKGQRRL-IDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLM 170
Cdd:PRK07721 100 IGQVLDALGEPLD----GSALPKGLAPVsTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLM 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 171 HMLVNNTEADVFVIGLIGERGREVTEC------AESLKKSVnaercvLVYATSDFSSVDRCNAALMATTIAEYFRDRGKR 244
Cdd:PRK07721 176 GMIARNTSADLNVIALIGERGREVREFierdlgPEGLKRSI------VVVATSDQPALMRIKGAYTATAIAEYFRDQGLN 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 245 VVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILD 324
Cdd:PRK07721 250 VMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILD 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 325 GHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPEL 404
Cdd:PRK07721 330 GHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQI 409
|
410 420
....*....|....*....|....*
gi 643607156 405 TKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK07721 410 ISFLKQGTDEKATFEESIQALLSLF 434
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
18-430 |
4.25e-134 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 392.59 E-value: 4.25e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 18 GSLIEAALDDVSVGEICEIYEnwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLN 97
Cdd:PRK09099 33 GTLLRVSGLDVTLGELCELRQ--RDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVID 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 98 ASGEIMERFVPDVPEEKgqrRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNT 177
Cdd:PRK09099 111 GLGEPIDGGGPLDCDEL---VPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 178 EADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYAR 257
Cdd:PRK09099 188 QCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFAR 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 258 ALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQG 337
Cdd:PRK09099 268 AQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARN 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 338 HYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMP 417
Cdd:PRK09099 348 QYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRTDEYSD 427
|
410
....*....|...
gi 643607156 418 MHETLKELERIVR 430
Cdd:PRK09099 428 PDATLAALAELSG 440
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
13-429 |
5.02e-128 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 376.99 E-value: 5.02e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 13 LHSINGSLIEAALDDVSVGEICEIYENWQAskriarAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALL 92
Cdd:PRK07594 25 IQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 93 GSVLNASGeimeRFVPDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHM 172
Cdd:PRK07594 99 GRVIDGFG----RPLDGRELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 173 LVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSM 252
Cdd:PRK07594 175 LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 253 TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRK 332
Cdd:PRK07594 255 TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 333 LAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSL 412
Cdd:PRK07594 335 LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK 414
|
410
....*....|....*..
gi 643607156 413 DEKMPMHETLKELERIV 429
Cdd:PRK07594 415 DEVCGPELLIEKLHQIL 431
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
2-429 |
3.74e-123 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 364.69 E-value: 3.74e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 2 ENIKLLNKYSYLHSINGSLIEAA--LDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPT 79
Cdd:PRK08927 10 GDIDTLVIYGRVVAVRGLLVEVAgpIHALSVGARIVVE---TRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 80 GEQLTIQINDALLGSVLNASGEIMERFVPDVPEEkgQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIF 159
Cdd:PRK08927 87 NAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGP--VPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 160 ASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTEC------AESLKKSVnaercvLVYATSDFSSVDRCNAALMATT 233
Cdd:PRK08927 165 AGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFlqddlgPEGLARSV------VVVATSDEPALMRRQAAYLTLA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 234 IAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLER--PGPTKKGSITAFYTVLLEGEDE 311
Cdd:PRK08927 239 IAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERagPGPIGEGTITGLFTVLVDGDDH 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 312 SDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQN 391
Cdd:PRK08927 319 NEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSD 398
|
410 420 430
....*....|....*....|....*....|....*...
gi 643607156 392 ADNDFAMNVRPELTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK08927 399 PEVDEAIRLNPALEAFLRQGKDEATSLAEGYARLAQIL 436
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
18-429 |
4.60e-117 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 349.41 E-value: 4.60e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 18 GSLIEAALDDVSVGEICEIYENWQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLN 97
Cdd:PRK05688 36 GLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLD 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 98 ASGEIMERFVPDVPEEKgqrrlIDALPPSY--LERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVN 175
Cdd:PRK05688 116 GAGRALDGKGPMKAEDW-----VPMDGPTInpLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 176 NTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRY 255
Cdd:PRK05688 191 FTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 256 ARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKK--GSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKL 333
Cdd:PRK05688 271 AQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPggGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRL 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 334 AGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLD 413
Cdd:PRK05688 351 AEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPHLVQFLRQGLR 430
|
410
....*....|....*.
gi 643607156 414 EKMPMHETLKELERIV 429
Cdd:PRK05688 431 ENVSLAQSREQLAAIF 446
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
49-429 |
1.78e-114 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 342.45 E-value: 1.78e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 49 AQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLNASGEIMERFVPDVPEEKGQRrliDALPPSYL 128
Cdd:PRK08972 61 AEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASR---HSPPINPL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 129 ERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAE 208
Cdd:PRK08972 138 SRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRA 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 209 RCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLE 288
Cdd:PRK08972 218 RSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 289 RP--GPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAAR 366
Cdd:PRK08972 298 RAgnGGPGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRR 377
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 643607156 367 VRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK08972 378 VKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQLA 440
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
1-430 |
2.90e-114 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 341.67 E-value: 2.90e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 1 MENIKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYENWQASKRIARAQVV--------------GFRngktllnlIGN 66
Cdd:PRK08472 10 LQKFNLSPRFGSITKISPTIIEADGLNPSVGDIVKIESSDNGKECLGMVVVIekeqfgispfsfieGFK--------IGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 67 SVGLTRTAvlkptgeqLTIQINDALLGSVLNASGEIMErfvpdvpeEKG-----QRRLIDALPPSYLERRVIDTPLETRI 141
Cdd:PRK08472 82 KVFISKEG--------LNIPVGRNLLGRVVDPLGRPID--------GKGaidyeRYAPIMKAPIAAMKRGLIDEVFSVGV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 142 RVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAEslkKSVNA--ERCVLVYATSDF 219
Cdd:PRK08472 146 KSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIE---KNLGGdlENTVIVVATSDD 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 220 SSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTK-KGSI 298
Cdd:PRK08472 223 SPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEgKGSI 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 299 TAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQ 378
Cdd:PRK08472 303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENE 382
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 643607156 379 VFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMPMHETLKELERIVR 430
Cdd:PRK08472 383 VLIRIGAYQKGNDKELDEAISKKEFMEQFLKQNPNELFPFEQTFEQLEEILR 434
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
141-349 |
1.02e-111 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 327.01 E-value: 1.02e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 141 IRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFS 220
Cdd:pfam00006 2 IRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLGSGALKRTVVVVATSDEP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 221 SVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPT--KKGSI 298
Cdd:pfam00006 82 PLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVkgKGGSI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 643607156 299 TAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVS 349
Cdd:pfam00006 162 TALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
1-429 |
9.24e-104 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 314.91 E-value: 9.24e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 1 MENIKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTG 80
Cdd:PRK07196 9 IENIHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIE---SVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPSE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 81 EQLTIQINDALLGSVLNASGEIMerfvpDVPEEKGQRRLIDALPPSY--LERRVIDTPLETRIRVIDGVLTCGIGQRVGI 158
Cdd:PRK07196 86 QDGELLIGDSWLGRVINGLGEPL-----DGKGQLGGSTPLQQQLPQIhpLQRRAVDTPLDVGVNAINGLLTIGKGQRVGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 159 FASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYF 238
Cdd:PRK07196 161 MAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 239 RDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTK-KGSITAFYTVLLEGEDESDPLGD 317
Cdd:PRK07196 241 RDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSgNGTMTAIYTVLAEGDDQQDPIVD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 318 EIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFA 397
Cdd:PRK07196 321 CARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQA 400
|
410 420 430
....*....|....*....|....*....|..
gi 643607156 398 MNVRPELTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK07196 401 VHYYPAITQFLRQEVGHPALFSASVEQLTGMF 432
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
1-429 |
1.07e-102 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 312.87 E-value: 1.07e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 1 MENIKLLNKYSYLHSINGSLIEAALDDVSVGEICEIYENWQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVL---- 76
Cdd:PRK07960 19 MAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVyarn 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 77 -----KPTGEQLTIqiNDALLGSVLNASGEIMERFVPdvPEEkGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCG 151
Cdd:PRK07960 99 isgegLQSGKQLPL--GPALLGRVLDGSGKPLDGLPA--PDT-GETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 152 IGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMA 231
Cdd:PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 232 TTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGP--TKKGSITAFYTVLLEGE 309
Cdd:PRK07960 254 TRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNgiSGGGSITAFYTVLTEGD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 310 DESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAG 389
Cdd:PRK07960 334 DQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYAKG 413
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 643607156 390 QNADNDFAMNVRPELTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK07960 414 SDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQALERIF 453
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
93-414 |
2.05e-101 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 309.24 E-value: 2.05e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 93 GSVLNASGEIMERFVPDVPEEkgQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHM 172
Cdd:PRK06002 107 GRVINALGEPIDGLGPLAPGT--RPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAM 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 173 LVNNTEADVFVIGLIGERGREVTE-----CAESLKKSVnaercvLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVL 247
Cdd:PRK06002 185 LARADAFDTVVIALVGERGREVREfledtLADNLKKAV------AVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLL 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 248 FIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLER--PGPTKKGSITAFYTVLLEGEDESDPLGDEIKSILDG 325
Cdd:PRK06002 259 IVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERagPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDG 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 326 HIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELT 405
Cdd:PRK06002 339 HIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIY 418
|
....*....
gi 643607156 406 KWLKQSLDE 414
Cdd:PRK06002 419 EALRQSPGD 427
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
65-429 |
2.31e-90 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 280.33 E-value: 2.31e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 65 GNSVGLTRTAVLKPTGEQLtiqindalLGSVLNASGEIMERFVPDVPEEKGQrrlIDALPPSYLERRVIDTPLETRIRVI 144
Cdd:PRK06793 79 GDSVTLIAEDVVIPRGNHL--------LGKVLSANGEVLNEEAENIPLQKIK---LDAPPIHAFEREEITDVFETGIKSI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 145 DGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTEcaeSLKKSVNAE---RCVLVYATSDFSS 221
Cdd:PRK06793 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKD---FIRKELGEEgmrKSVVVVATSDESH 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 222 VDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPArrGYPASVFDS-LPRLLERPGPTKKGSITA 300
Cdd:PRK06793 225 LMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESyMKKLLERSGKTQKGSITG 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 301 FYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVF 380
Cdd:PRK06793 303 IYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELY 382
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 643607156 381 IDLGEYRagQNADNDFAMNVRPE---LTKWLKQSLDEKMPMHETLKELERIV 429
Cdd:PRK06793 383 FKLGTIQ--ENAENAYIFECKNKvegINTFLKQGRSDSFQFDDIVEAMHHIV 432
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
90-351 |
3.45e-89 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 271.64 E-value: 3.45e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 90 ALLGSVLNASGEIMERFVPDVPEekgQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVL 169
Cdd:cd19476 7 ELLGRILDGLGEPLDGLPPIKTK---QRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKTVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 170 MHMLVNNT---EADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVV 246
Cdd:cd19476 84 AMQLARNQakaHAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQHVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 247 LFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTK--KGSITAFYTVLLEGEDESDPLGDEIKSILD 324
Cdd:cd19476 164 LIIDDISRYAEALREMSALLGEPPGREGYPPYLFTKLATLYERAGKVKdgGGSITAIPAVSTPGDDLTDPIPDNTFAILD 243
|
250 260
....*....|....*....|....*..
gi 643607156 325 GHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:cd19476 244 GQIVLSRELARKGIYPAINVLDSTSRV 270
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
13-430 |
1.85e-81 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 257.52 E-value: 1.85e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 13 LHSINGSLIEAALDDVSVGEICEIyenwqASKRIAR--AQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDA 90
Cdd:PRK05922 23 LSRVSGNLLEAQGLSACLGELCQI-----SLSKSPPilAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDH 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 91 LLGSVLNASGEIMERfVPDVPeeKGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLM 170
Cdd:PRK05922 98 LLGRVLDGFGNPLDG-KEQLP--KTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 171 HMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFID 250
Cdd:PRK05922 175 STIAKGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMD 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 251 SMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVlLEGEDESDPLGDEIKSILDGHIYLS 330
Cdd:PRK05922 255 SLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAI-LHYPNHPDIFTDYLKSLLDGHFFLT 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 331 ---RKLAGqghyPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKW 407
Cdd:PRK05922 334 pqgKALAS----PPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPSIKQF 409
|
410 420
....*....|....*....|...
gi 643607156 408 LKQSLDEKMPMHETLKELERIVR 430
Cdd:PRK05922 410 LSQPLSSYCALHNTLKQLEALLK 432
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
64-381 |
3.59e-45 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 162.58 E-value: 3.59e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 64 IGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLNASGEIMERfvpDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIRV 143
Cdd:TIGR01039 57 MGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDE---KGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKV 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 144 IDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNT---EADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFS 220
Cdd:TIGR01039 134 IDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIakeHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEP 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 221 SVDRCNAALMATTIAEYFRD-RGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSIT 299
Cdd:TIGR01039 214 PGARMRVALTGLTMAEYFRDeQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSIT 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 300 AFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFG-QVTDEKHRKFAARVRKLLTTLEDLQ 378
Cdd:TIGR01039 294 SVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDpSVVGEEHYDVARGVQQILQRYKELQ 373
|
...
gi 643607156 379 VFI 381
Cdd:TIGR01039 374 DII 376
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
63-384 |
1.58e-41 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 153.53 E-value: 1.58e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 63 LIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLNASGEIMERfvpDVPEEKGQRRLIDALPPSYLERRVIDTPLETRIR 142
Cdd:PRK13343 75 LLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDG---GGPLQATARRPLERPAPAIIERDFVTEPLQTGIK 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 143 VIDGVLTCGIGQRVGIFASAGCGKTVL-MHMLVNNTEADVFVIG-LIGERGREVTECAESLKKSVNAERCVLVYATSDFS 220
Cdd:PRK13343 152 VVDALIPIGRGQRELIIGDRQTGKTAIaIDAIINQKDSDVICVYvAIGQKASAVARVIETLREHGALEYTTVVVAEASDP 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 221 SVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERP---GPTKK-G 296
Cdd:PRK13343 232 PGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAaklSPELGgG 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 297 SITAFYTVllegEDESDPLGDEIK----SILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLT 372
Cdd:PRK13343 312 SLTALPII----ETLAGELSAYIPtnliSITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYA 387
|
330
....*....|..
gi 643607156 373 TLEDLQVFIDLG 384
Cdd:PRK13343 388 QFLELEAFTRFG 399
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
84-351 |
1.89e-41 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 148.14 E-value: 1.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 84 TIQINDALLGSVLNASGE-IMERfvPDVPEEKgqRRLIDALPPSYLERRVIDTPLETRIRVIDgvLTCGI--GQRVGIFA 160
Cdd:cd01133 1 SVPVGEETLGRIFNVLGEpIDER--GPIKAKE--RWPIHREAPEFVELSTEQEILETGIKVVD--LLAPYakGGKIGLFG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 161 SAGCGKTVLMHMLVNN--TEADVF-VIGLIGERGREVTECAESLKKS-----VNAERCVLVYATSDFSSVDRCNAALMAT 232
Cdd:cd01133 75 GAGVGKTVLIMELINNiaKAHGGYsVFAGVGERTREGNDLYHEMKESgvinlDGLSKVALVYGQMNEPPGARARVALTGL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 233 TIAEYFRD-RGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKKGSITAFYTVLLEGEDE 311
Cdd:cd01133 155 TMAEYFRDeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGSLQERITSTKKGSITSVQAVYVPADDL 234
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 643607156 312 SDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:cd01133 235 TDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRI 274
|
|
| AtpD |
COG0055 |
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP ... |
69-378 |
4.56e-41 |
|
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP synthase, beta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439825 [Multi-domain] Cd Length: 468 Bit Score: 151.78 E-value: 4.56e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 69 GLTRTAVLKPTGEQLTIQINDALLGSVLNASGEIMERfVPDVPEEKgqRRLIDALPPSYLERRVIDTPLETRIRVIDgvL 148
Cdd:COG0055 65 GLVRGMEVIDTGAPISVPVGEATLGRIFNVLGEPIDG-KGPIEAKE--RRPIHRPAPPFEEQSTKTEILETGIKVID--L 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 149 TCGI--GQRVGIFASAGCGKTVLMHMLVNNTEAD-----VFViGlIGERGREVTECAESLKKSVNAERCVLVYATSDFSS 221
Cdd:COG0055 140 LAPYakGGKIGLFGGAGVGKTVLIMELIHNIAKEhggvsVFA-G-VGERTREGNDLYREMKESGVLDKTALVFGQMNEPP 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 222 VDRCNAALMATTIAEYFRD-RGKRVVLFIDSMTRYARAlrDMKLAA--GEPPARRGYPASVFDSLPRLLERPGPTKKGSI 298
Cdd:COG0055 218 GARLRVALTALTMAEYFRDeEGQDVLLFIDNIFRFTQA--GSEVSAllGRMPSAVGYQPTLATEMGALQERITSTKKGSI 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 299 TAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFG-QVTDEKHRKFAARVRKLLTTLEDL 377
Cdd:COG0055 296 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRILDpLIVGEEHYRVAREVQRILQRYKEL 375
|
.
gi 643607156 378 Q 378
Cdd:COG0055 376 Q 376
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
85-351 |
9.98e-38 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 138.08 E-value: 9.98e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 85 IQINDALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGC 164
Cdd:cd01132 4 VPVGEALLGRVVDALGNPIDGKGPIQTKE---RRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 165 GKT-VLMHMLVNNTEADVFVIGL-IGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRG 242
Cdd:cd01132 81 GKTaIAIDTIINQKGKKVYCIYVaIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 243 KRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKK----GSITAFYTVLLEGEDESDPLGDE 318
Cdd:cd01132 161 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDelggGSLTALPIIETQAGDVSAYIPTN 240
|
250 260 270
....*....|....*....|....*....|...
gi 643607156 319 IKSILDGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:cd01132 241 VISITDGQIFLESELFNKGIRPAINVGLSVSRV 273
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
69-381 |
6.07e-37 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 140.95 E-value: 6.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 69 GLTRTAVLKPTGEQLTIQINDALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLErrvIDTPL---ETRIRVID 145
Cdd:CHL00060 80 GLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRT---TSPIHRSAPAFIQ---LDTKLsifETGIKVVD 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 146 GVLTCGIGQRVGIFASAGCGKTVLMHMLVNN---TEADVFVIGLIGERGREVTECAESLKKS--VNAE-----RCVLVYA 215
Cdd:CHL00060 154 LLAPYRRGGKIGLFGGAGVGKTVLIMELINNiakAHGGVSVFGGVGERTREGNDLYMEMKESgvINEQniaesKVALVYG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 216 TSDFSSVDRCNAALMATTIAEYFRDRGKR-VVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTK 294
Cdd:CHL00060 234 QMNEPPGARMRVGLTALTMAEYFRDVNKQdVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 295 KGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFG-QVTDEKHRKFAARVRKLLTT 373
Cdd:CHL00060 314 EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQpRIVGEEHYETAQRVKQTLQR 393
|
....*...
gi 643607156 374 LEDLQVFI 381
Cdd:CHL00060 394 YKELQDII 401
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
83-350 |
3.56e-36 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 134.27 E-value: 3.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 83 LTIQINDALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASA 162
Cdd:cd01135 2 LKLPVSEDMLGRIFNGSGKPIDGGPPILPED---YLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 163 GCGKTVLMHM------LVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAE 236
Cdd:cd01135 79 GLPHNELAAQiarqagVVGSEENFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 237 YFR-DRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPG--PTKKGSITAFYTVLLEGEDESD 313
Cdd:cd01135 159 YLAyEKGKHVLVILTDMTNYAEALREVSAAREEVPGRRGYPGYMYTDLATIYERAGrvEGRKGSITQIPILTMPNDDITH 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 643607156 314 PLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSR 350
Cdd:cd01135 239 PIPDLTGYITEGQIYLDRDLHNKGIYPPIDVLPSLSR 275
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
124-350 |
2.91e-35 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 131.93 E-value: 2.91e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 124 PPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESL-- 201
Cdd:cd01134 47 PRPVKEKLPPNVPLLTGQRVLDTLFPVAKGGTAAIPGPFGCGKTVISQSLSKWSNSDVVIYVGCGERGNEMAEVLEEFpe 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 202 ------KKSVnAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGY 275
Cdd:cd01134 127 lkdpitGESL-MERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGY 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 276 PASVFDSLPRLLERPG-------PTKKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSV 348
Cdd:cd01134 206 PAYLGARLAEFYERAGrvrclgsPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISY 285
|
..
gi 643607156 349 SR 350
Cdd:cd01134 286 SK 287
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
10-370 |
9.54e-35 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 134.18 E-value: 9.54e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 10 YSYLHSINGSLIEA-ALDDVSVGEICEIYEnwqASKRIARAQVVGFRNGKTLLNLIGNSVGL-TRTAVLKPTGEQLTIQI 87
Cdd:PRK04196 4 YRTVSEIKGPLLFVeGVEGVAYGEIVEIEL---PNGEKRRGQVLEVSEDKAVVQVFEGTTGLdLKDTKVRFTGEPLKLPV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 88 NDALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGcgkt 167
Cdd:PRK04196 81 SEDMLGRIFDGLGRPIDGGPEIIPEK---RLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSG---- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 168 vLMH-----------MLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAE 236
Cdd:PRK04196 154 -LPHnelaaqiarqaKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAE 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 237 YFR-DRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPT--KKGSITAFYTVLLEGEDESD 313
Cdd:PRK04196 233 YLAfEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIkgKKGSITQIPILTMPDDDITH 312
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 643607156 314 PLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQ-----VTDEKHRKFA-------ARVRKL 370
Cdd:PRK04196 313 PIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDgigegKTREDHKDVAnqlyaayARGKDL 381
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
25-351 |
3.80e-31 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 124.31 E-value: 3.80e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 25 LDDVSVGEICEIYENwqaSKRIAraqvvgfrngktlLNLIGNSVGltrtAVL-------------KPTGEQLTIQINDAL 91
Cdd:CHL00059 23 LDEVMAGELVEFEDG---TIGIA-------------LNLESNNVG----VVLmgdglmiqegssvKATGKIAQIPVSEAY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 92 LGSVLNASGEIMerfvpDVPEE--KGQRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKT-V 168
Cdd:CHL00059 83 LGRVVNALAKPI-----DGKGEisASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTaV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 169 LMHMLVNNTEADVFVIGL-IGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVL 247
Cdd:CHL00059 158 ATDTILNQKGQNVICVYVaIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 248 FIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTKK----GSITAFYTVLLEGEDESDPLGDEIKSIL 323
Cdd:CHL00059 238 IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSqlgeGSMTALPIVETQAGDVSAYIPTNVISIT 317
|
330 340
....*....|....*....|....*...
gi 643607156 324 DGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:CHL00059 318 DGQIFLSADLFNAGIRPAINVGISVSRV 345
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
10-416 |
1.40e-29 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 119.37 E-value: 1.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 10 YSYLHSINGSLIEAALDDVSVGEICEIyenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQIND 89
Cdd:PRK02118 5 YTKITDITGNVITVEAEGVGYGELATV----ERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 90 ALLGSVLNASGEIMERfvpdVPEEKGQRrlIDALPPSY--LERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKT 167
Cdd:PRK02118 81 SLLGRRFNGSGKPIDG----GPELEGEP--IEIGGPSVnpVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 168 VLMHMLVNNTEADVFVIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFR-DRGKRVV 246
Cdd:PRK02118 155 ALLARIALQAEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFAlEGKKKVL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 247 LFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLER----PGptkKGSITAFYTVLLEGEDESDPLGDEIKSI 322
Cdd:PRK02118 235 VLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKavdfED---GGSITIIAVTTMPGDDVTHPVPDNTGYI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 323 LDGHIYLsrklagqgHYPAIDILKSVSR----VFGQVTDEKHRKFAARVRKLlttledlqvfidlgeYRAGQNADNDFAM 398
Cdd:PRK02118 312 TEGQFYL--------RRGRIDPFGSLSRlkqlVIGKKTREDHGDLMNAMIRL---------------YADSREAKEKMAM 368
|
410
....*....|....*...
gi 643607156 399 NVrpELTKWlkqslDEKM 416
Cdd:PRK02118 369 GF--KLSNW-----DEKL 379
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
127-370 |
2.61e-26 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 111.41 E-value: 2.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 127 YLERRVIDTPLETRIRVIDGVLTCGIGqrvGIFASAG---CGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAESLKK 203
Cdd:PRK04192 201 YKEKLPPVEPLITGQRVIDTFFPVAKG---GTAAIPGpfgSGKTVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 204 SVNA-------ERCVLVYATSDF------SSVdrcnaaLMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPP 270
Cdd:PRK04192 278 LIDPktgrplmERTVLIANTSNMpvaareASI------YTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMP 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 271 ARRGYPASVFDSLPRLLERPGPTK-----KGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDIL 345
Cdd:PRK04192 352 GEEGYPAYLASRLAEFYERAGRVKtlggeEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWL 431
|
250 260
....*....|....*....|....*
gi 643607156 346 KSVSRVFGQVTDEKHRKFAARVRKL 370
Cdd:PRK04192 432 TSYSLYLDQVAPWWEENVDPDWREL 456
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
10-351 |
3.09e-23 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 101.34 E-value: 3.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 10 YSYLHSINGSLIeaALDDVSVGEICEIYENWQASKRIARAQVVGFRNGKTLLNLIGNSVGL-TRTAVLKPTGEQLTIQIN 88
Cdd:TIGR01040 2 YRTVSGVNGPLV--ILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIdAKKTTCEFTGDILRTPVS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 89 DALLGSVLNASGEIMERFVPDVPEEkgqRRLIDALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAG----- 163
Cdd:TIGR01040 80 EDMLGRVFNGSGKPIDKGPPVLAED---YLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGlphne 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 164 -----CGKTVLMHM---LVNNTEADVFVIgLIGERGREVtECAESLKKSV----NAERCVLVYATSDFSSVDRCNAALMA 231
Cdd:TIGR01040 157 iaaqiCRQAGLVKLptkDVHDGHEDNFAI-VFAAMGVNM-ETARFFKQDFeengSMERVCLFLNLANDPTIERIITPRLA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 232 TTIAEYFR-DRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPT--KKGSITAFYTVLLEG 308
Cdd:TIGR01040 235 LTTAEYLAyQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVegRNGSITQIPILTMPN 314
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 643607156 309 EDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:TIGR01040 315 DDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 357
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
104-402 |
7.59e-23 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 99.39 E-value: 7.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 104 ERFVPDVPEEKGQRRLIDALPPSYLERRVIdtpLETR-----IRVIDGVLTCGIGQRVGIFASAGCGKTVLMH-----ML 173
Cdd:PRK12608 82 DSVNGTDPEKLARRPHFDDLTPLHPRERLR---LETGsddlsMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQqiaaaVA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 174 VNNTEADVFVIgLIGERGREVTEcaesLKKSVNAErcvlVYA-TSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSM 252
Cdd:PRK12608 159 ANHPEVHLMVL-LIDERPEEVTD----MRRSVKGE----VYAsTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 253 TRYARALRDMKLAAGepparRGYPASVfDSlpRLLERP----GPTKK----GSITAFYTVLLE-GEDESDPLGDEIKSIL 323
Cdd:PRK12608 230 TRLARAYNNEVESSG-----RTLSGGV-DA--RALQRPkrlfGAARNieegGSLTIIATALVDtGSRMDEVIFEEFKGTG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 324 DGHIYLSRKLAGQGHYPAIDILKSVSR----VFGQVTDEKHRkfaaRVRKLLTTL---EDLQVFIDlgeyRAGQNADND- 395
Cdd:PRK12608 302 NMEIVLDRELADKRVFPAIDIAKSGTRreelLLDSKELEKVR----RLRRALASRkpvEAMEALLE----KLRETPDNAe 373
|
....*..
gi 643607156 396 FAMNVRP 402
Cdd:PRK12608 374 FLNSVQP 380
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
61-353 |
1.40e-22 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 99.75 E-value: 1.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 61 LNLIGNSVGltrtAVL-------------KPTGEQLTIQINDALLGSVLNASGEimerfvpdvP-EEKG-----QRRLID 121
Cdd:PRK09281 64 LNLEEDNVG----AVIlgdyedikegdtvKRTGRILEVPVGEALLGRVVNPLGQ---------PiDGKGpieatETRPVE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 122 ALPPSYLERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKT-VLMHMLVNNTEADVFVIGL-IGERGREVTECAE 199
Cdd:PRK09281 131 RKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTaIAIDTIINQKGKDVICIYVaIGQKASTVAQVVR 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 200 SLKKSVNAERCVLVYAT-SDfssvdrcNAALM------ATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPAR 272
Cdd:PRK09281 211 KLEEHGAMEYTIVVAATaSD-------PAPLQylapyaGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 273 RGYPASVFDSLPRLLERpgPTK------KGSITAFytvllegedesdPL-----GD-------EIKSILDGHIYLSRKLA 334
Cdd:PRK09281 284 EAYPGDVFYLHSRLLER--AAKlsdelgGGSLTAL------------PIietqaGDvsayiptNVISITDGQIFLESDLF 349
|
330
....*....|....*....
gi 643607156 335 GQGHYPAIDILKSVSRVFG 353
Cdd:PRK09281 350 NAGIRPAINVGISVSRVGG 368
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
73-370 |
2.41e-22 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 99.28 E-value: 2.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 73 TAVLKPTGEQLTIQINDAL---------------LGSVLNASGEIM--ERFVPDVPEEKGQRRLIDALPPSYLERRVIDT 135
Cdd:PRK07165 46 KAYLLINNEKGKIKINDELielnntnkvktskeyFGKIIDIDGNIIypEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 136 PLETRIRVIDGVLTCGIGQRVGIFASAGCGKT-VLMHMLVNNTEADVFVIGL-IGERGREVTECAESLKKSVNAERCVLV 213
Cdd:PRK07165 126 QLYTGIIAIDLLIPIGKGQRELIIGDRQTGKThIALNTIINQKNTNVKCIYVaIGQKRENLSRIYETLKEHDALKNTIII 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 214 YATSDfSSVDRCNAALMATTIAE---YFRDrgkrVVLFIDSMTRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERP 290
Cdd:PRK07165 206 DAPST-SPYEQYLAPYVAMAHAEnisYNDD----VLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERA 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 291 GPTK-KGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRK 369
Cdd:PRK07165 281 GKFKnRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEISK 360
|
.
gi 643607156 370 L 370
Cdd:PRK07165 361 I 361
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
44-370 |
1.42e-21 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 97.79 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 44 KRIARaqvvgfrnGKTLLNLIGNSVGLTRTAVLKPTGE--QLTIQINDALLGSvlNASGEIMERFVPDVP-EEKGQRRLI 120
Cdd:PRK14698 560 EREAR--------GYTSIDIVPVDVEEIYEALGRPYAElkKAGIEIHNYLSGE--NMSYEMFRKFAKFVGlEEIAENHLQ 629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 121 DALPPSYLERRVIDTPLEtrirVIDgvLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGREVTECAES 200
Cdd:PRK14698 630 HILFDEIVEINYISEGQE----VYD--ITTETHNFIGGNMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEE 703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 201 LKKSVNA-------ERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARR 273
Cdd:PRK14698 704 FPKLKDPktgkplmERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEE 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 274 GYPASVFDSLPRLLERPGPT-------KKGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILK 346
Cdd:PRK14698 784 GYPAYLASKLAEFYERAGRVvtlgsdyRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLT 863
|
330 340
....*....|....*....|....
gi 643607156 347 SVSRVFGQVTDEKHRKFAARVRKL 370
Cdd:PRK14698 864 SYSLYVDAVKDWWHKNVDPEWKAM 887
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
55-377 |
1.59e-20 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 93.95 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 55 RNGKTLLNLIGNSVGLTRTAVLKPTGEQLTIQINDALLGSVLNASGE-------IMERFVPDVPEEKGQrrlIDALPPSY 127
Cdd:PTZ00185 87 KDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHevpvgllTRSRALLESEQTLGK---VDAGAPNI 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 128 LERRVIDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVL------------MHMLVNNTEADVFVIglIGERGREVT 195
Cdd:PTZ00185 164 VSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIavstiinqvrinQQILSKNAVISIYVS--IGQRCSNVA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 196 ECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRDMKLAAGEPPARRGY 275
Cdd:PTZ00185 242 RIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 276 PASVFDSLPRLLERPG---PTK-KGSITAFYTVLLEGEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSRV 351
Cdd:PTZ00185 322 PGDVFYLHSRLLERAAmlsPGKgGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRV 401
|
330 340
....*....|....*....|....*.
gi 643607156 352 FGQVTDEKHRKFAARVRKLLTTLEDL 377
Cdd:PTZ00185 402 GSSAQNVAMKAVAGKLKGILAEYRKL 427
|
|
| ATP-synt_F1_V1_A1_AB_FliI_N |
cd01426 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
10-81 |
2.63e-20 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, N-terminal domain; The alpha and beta (or A and B) subunits are primarily found in the F1, V1, and A1 complexes of the F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex which forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349738 [Multi-domain] Cd Length: 73 Bit Score: 84.29 E-value: 2.63e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 643607156 10 YSYLHSINGSLIEAALD-DVSVGEICEIYENWQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGE 81
Cdd:cd01426 1 KGRVIRVNGPLVEAELEgEVAIGEVCEIERGDGNNETVLKAEVIGFRGDRAILQLFESTRGLSRGALVEPTGR 73
|
|
| T3SS_ATPase_C |
pfam18269 |
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family ... |
356-425 |
5.72e-19 |
|
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family of ATPases that form part of the Type III secretion system (T3SS) present in Escherichia coli. T3SS is a macromolecular complex that creates a syringe-like apparatus extending from the bacterial cytosol across three membranes to the eukaryotic cytosol. This process is essential for pathogenicity. EscN is a functionally unique ATPase that provides an inner-membrane recognition gate for the T3SS chaperone-virulence effector complexes as well as a potential source of energy for their subsequent secretion.The C-terminal domain of T3SS ATPases mediates binding with multiple contact points along the chaperone.
Pssm-ID: 465691 [Multi-domain] Cd Length: 70 Bit Score: 80.56 E-value: 5.72e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 356 TDEKHRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMPMHETLKEL 425
Cdd:pfam18269 1 VSPEHLQAARRLRELLATYQENEDLIRIGAYQAGSDPEIDEAIAKRPAINAFLRQGVDEPVSFEETLAQL 70
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
109-378 |
2.36e-18 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 86.66 E-value: 2.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 109 DVPEEKGQRRLIDALPPSYLERRVIdtpLETR-----IRVIDGVLTCGIGQRVGIFASAGCGKTVLMHML-----VNNTE 178
Cdd:TIGR00767 122 DDPEKAKNRVLFENLTPLYPNERLR---LETStedlsTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIaqaitRNHPE 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 179 ADVFVIgLIGERGREVTEcaesLKKSVNAErcvLVYATSDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARA 258
Cdd:TIGR00767 199 VELIVL-LIDERPEEVTD----MQRSVKGE---VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARA 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 259 LRDMKLAAGE------------PPARrgypasvFDSLPRLLErpgptKKGSITAFYTVLLE-GEDESDPLGDEIKSILDG 325
Cdd:TIGR00767 271 YNTVTPASGKvlsggvdanalhRPKR-------FFGAARNIE-----EGGSLTIIATALIDtGSRMDEVIFEEFKGTGNM 338
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 643607156 326 HIYLSRKLAGQGHYPAIDILKSVSRVFGQVTDEKHRKFAARVRKLLTTLEDLQ 378
Cdd:TIGR00767 339 ELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIE 391
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
142-350 |
2.00e-17 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 81.48 E-value: 2.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 142 RVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLV-----NNTEADVFVIgLIGERGREVTEcaesLKKSVNAErcvLVYAT 216
Cdd:cd01128 5 RVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIAnaiakNHPEVELIVL-LIDERPEEVTD----MRRSVKGE---VVAST 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 217 SDFSSVDRCNAALMATTIAEYFRDRGKRVVLFIDSMTRYARALRdmklaAGEPPARRGYPASVFdslPRLLERP----GP 292
Cdd:cd01128 77 FDEPPERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYN-----TVVPSSGKTLSGGVD---ANALHKPkrffGA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 643607156 293 TKK----GSITAFYTVLLE-GEDESDPLGDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSR 350
Cdd:cd01128 149 ARNieegGSLTIIATALVDtGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTR 211
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
111-350 |
1.64e-14 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 74.79 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 111 PEEKGQRRLIDALPPSYLERRV---IDTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHML-----VNNTEADVF 182
Cdd:PRK09376 124 PEKARNRPLFENLTPLYPNERLrleTGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIansitTNHPEVHLI 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 183 VIgLIGERGREVTEcaesLKKSVNAErcvLVYATSDfssvdrcNAALMATTIAEYFRDRGKR-------VVLFIDSMTRY 255
Cdd:PRK09376 204 VL-LIDERPEEVTD----MQRSVKGE---VVASTFD-------EPAERHVQVAEMVIEKAKRlvehgkdVVILLDSITRL 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 256 ARAlrdmklaagepparrgYPASVFDS---L-----PRLLERPgptKK-----------GSITAFYTVLLE-GEDESDPL 315
Cdd:PRK09376 269 ARA----------------YNTVVPSSgkvLsggvdANALHRP---KRffgaarnieegGSLTIIATALIDtGSRMDEVI 329
|
250 260 270
....*....|....*....|....*....|....*
gi 643607156 316 GDEIKSILDGHIYLSRKLAGQGHYPAIDILKSVSR 350
Cdd:PRK09376 330 FEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTR 364
|
|
| ATP-synt_flagellum-secretory_path_III_C |
cd18114 |
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the ... |
360-430 |
3.11e-13 |
|
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The flagellum-specific ATPase FliI is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of FoF1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349749 [Multi-domain] Cd Length: 71 Bit Score: 64.55 E-value: 3.11e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 643607156 360 HRKFAARVRKLLTTLEDLQVFIDLGEYRAGQNADNDFAMNVRPELTKWLKQSLDEKMPMHETLKELERIVR 430
Cdd:cd18114 1 HYLAARKFRELMSTYQENEDLIRIGAYKKGSDPEVDEAIRLKPQIEAFLKQGLNEKAPLEESLQQLEEIFG 71
|
|
| ATP-synt_flagellum-secretory_path_III_N |
cd18117 |
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the ... |
15-81 |
1.29e-08 |
|
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The FliI ATPase is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of F1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens, such as Salmonella and Chlamydia, also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349741 [Multi-domain] Cd Length: 70 Bit Score: 51.37 E-value: 1.29e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 643607156 15 SINGSLIEAALDDVSVGEICEIYenwQASKRIARAQVVGFRNGKTLLNLIGNSVGLTRTAVLKPTGE 81
Cdd:cd18117 7 RVVGLLLEAVGPQAPIGELCLIE---TADGLSILAEVVGFSGEKVLLMPLGELSGLSPGARVVPLGR 70
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
89-258 |
2.93e-07 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 52.60 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 89 DALLGSV-LNASGEIMER---FVPDV---------PEEKGQRRLIDALPPSYLERRVIdtpLET---RI--RVIDGVLTC 150
Cdd:PRK12678 337 DAVTGAVrAPREGEQGNQrqkFNPLVrldsvngmsPEEAKKRPEFGKLTPLYPNERLR---LETepkKLttRVIDLIMPI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 151 GIGQRVGIFASAGCGKTVLMH-----MLVNNTEADVFVIgLIGERGREVTEcaesLKKSVNAErcvlVYAtsdfSSVDRc 225
Cdd:PRK12678 414 GKGQRGLIVSPPKAGKTTILQnianaITTNNPECHLMVV-LVDERPEEVTD----MQRSVKGE----VIA----STFDR- 479
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 643607156 226 nAALMATTIAEYFRDRGKR-------VVLFIDSMTRYARA 258
Cdd:PRK12678 480 -PPSDHTTVAELAIERAKRlvelgkdVVVLLDSITRLGRA 518
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
153-333 |
2.85e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.90 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 153 GQRVGIFASAGCGKTVLMHMLvnnteadvfvIGLIGERGREVTECAESLKKSVNAERCVLVYATSDFSSVDRCNAALMAT 232
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARAL----------ARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 233 TIAEYFRDRgkrvVLFIDSMTRYARALRDMKLaagepparrgypasvfdslpRLLERPGPTKKGSITAFYTVLLEGEDES 312
Cdd:smart00382 72 ALARKLKPD----VLILDEITSLLDAEQEALL--------------------LLLEELRLLLLLKSEKNLTVILTTNDEK 127
|
170 180
....*....|....*....|.
gi 643607156 313 DPLGDEIKSILDGHIYLSRKL 333
Cdd:smart00382 128 DLGPALLRRRFDRRIVLLLIL 148
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
158-346 |
4.86e-03 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 38.36 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 158 IFASAGCGKTVL-MHMLVNNTEAD--VFVIGLiGERGREVTECAES----LKKSVNAERCVLVYATSDFSSVDrcnAALM 230
Cdd:COG0467 25 LSGPPGTGKTTLaLQFLAEGLRRGekGLYVSF-EESPEQLLRRAESlgldLEEYIESGLLRIIDLSPEELGLD---LEEL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643607156 231 ATTIAEYFRDRG-KRVVlfIDSMTryaralrDMKLAAGEPPARRGYPASVFDSLprllerpgptKKGSITAFYTVLLEGE 309
Cdd:COG0467 101 LARLREAVEEFGaKRVV--IDSLS-------GLLLALPDPERLREFLHRLLRYL----------KKRGVTTLLTSETGGL 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 643607156 310 DESDPLGDeIKSILDGHIYLSRKLAGQGHYPAIDILK 346
Cdd:COG0467 162 EDEATEGG-LSYLADGVILLRYVELGGELRRALSVLK 197
|
|
| |
