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Conserved domains on  [gi|644574172|ref|WP_025334438|]
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MULTISPECIES: ferredoxin [Paenibacillus]

Protein Classification

ferredoxin( domain architecture ID 10003036)

ferredoxin is an iron-sulfur protein transferring electrons in a wide variety of metabolic reactions

CATH:  3.30.70.20
Gene Ontology:  GO:0051536|GO:0005506|GO:0009055
PubMed:  34698119|35941298
SCOP:  4001234

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
6-73 3.81e-18

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 70.68  E-value: 3.81e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644574172  6 WVEKDTCIACGACGATAPDIYDYDDEGLAEVIyeadanrgITDIPEDLFDDLQDAADGCPTDSIKISD 73
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVL--------DEEVPEELEEDVREAADACPVGAITVEE 63
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
6-73 3.81e-18

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 70.68  E-value: 3.81e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644574172  6 WVEKDTCIACGACGATAPDIYDYDDEGLAEVIyeadanrgITDIPEDLFDDLQDAADGCPTDSIKISD 73
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVL--------DEEVPEELEEDVREAADACPVGAITVEE 63
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-71 2.53e-15

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 63.09  E-value: 2.53e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644574172   7 VEKDTCIACGACGATAPDIYDYDDEGLAEVIYEADANrgitdipEDLFDDLQDAADGCPTDSIKI 71
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQPVN-------EEEEDLAEEALDSCPVEAIGT 58
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
6-73 3.81e-18

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 70.68  E-value: 3.81e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644574172  6 WVEKDTCIACGACGATAPDIYDYDDEGLAEVIyeadanrgITDIPEDLFDDLQDAADGCPTDSIKISD 73
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVL--------DEEVPEELEEDVREAADACPVGAITVEE 63
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-71 2.53e-15

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 63.09  E-value: 2.53e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644574172   7 VEKDTCIACGACGATAPDIYDYDDEGLAEVIYEADANrgitdipEDLFDDLQDAADGCPTDSIKI 71
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQPVN-------EEEEDLAEEALDSCPVEAIGT 58
Fer4_15 pfam13459
4Fe-4S single cluster domain;
6-71 1.08e-09

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 49.28  E-value: 1.08e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644574172   6 WVEKDTCIACGACGATAPDIYDYDDEGLAEVIyEADANRGITDIPEDLFDDLQDAADGCPTDSIKI 71
Cdd:pfam13459  2 EVDRDRCIGCGLCVALDPELFELDDDGKASVL-LDDGEIGEGEVPDDDEEAAQEAARACPVDAIRV 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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