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Conserved domains on  [gi|645924125|ref|WP_025478110|]
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MULTISPECIES: AraC family transcriptional regulator [Enterococcus]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 11454391)

helix-turn-helix (HTH) domain-containing protein with an AraC family HTH domain, binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.60
Gene Ontology:  GO:0003700|GO:0003677
PubMed:  10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
118-305 4.69e-25

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


:

Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 101.01  E-value: 4.69e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 118 LEGFFTTILEQPIDPAYLKHEAINRFYALLNALADEYVGNEELSLLKIALPSLLADAEYLEDFSILVKETLEKLTHFSAN 197
Cdd:COG2207   66 LLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLL 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 198 AIKDNFDILTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICE 277
Cdd:COG2207  146 LLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAY 225

                        170       180
                 ....*....|....*....|....*...
gi 645924125 278 KVGYTELGYFSRVFKEETGMTPSQYRKG 305
Cdd:COG2207  226 ELGFSSQSHFSRAFKKRFGVTPSEYRKR 253
 
Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
118-305 4.69e-25

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 101.01  E-value: 4.69e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 118 LEGFFTTILEQPIDPAYLKHEAINRFYALLNALADEYVGNEELSLLKIALPSLLADAEYLEDFSILVKETLEKLTHFSAN 197
Cdd:COG2207   66 LLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLL 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 198 AIKDNFDILTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICE 277
Cdd:COG2207  146 LLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAY 225

                        170       180
                 ....*....|....*....|....*...
gi 645924125 278 KVGYTELGYFSRVFKEETGMTPSQYRKG 305
Cdd:COG2207  226 ELGFSSQSHFSRAFKKRFGVTPSEYRKR 253
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
220-303 2.11e-24

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 94.16  E-value: 2.11e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125   220 EINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKEETGMTP 299
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 645924125   300 SQYR 303
Cdd:smart00342  81 SEYR 84
HTH_18 pfam12833
Helix-turn-helix domain;
226-304 4.49e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 88.03  E-value: 4.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125  226 LSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTE-TRLTLTEICEKVGYTELGYFSRVFKEETGMTPSQYRK 304
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
212-305 7.80e-17

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 78.86  E-value: 7.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 212 FVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVF 291
Cdd:PRK10572 191 YISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVF 270

                         90
                 ....*....|....
gi 645924125 292 KEETGMTPSQYRKG 305
Cdd:PRK10572 271 KKCTGASPSEFRAR 284
 
Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
118-305 4.69e-25

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 101.01  E-value: 4.69e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 118 LEGFFTTILEQPIDPAYLKHEAINRFYALLNALADEYVGNEELSLLKIALPSLLADAEYLEDFSILVKETLEKLTHFSAN 197
Cdd:COG2207   66 LLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLL 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 198 AIKDNFDILTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICE 277
Cdd:COG2207  146 LLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAY 225

                        170       180
                 ....*....|....*....|....*...
gi 645924125 278 KVGYTELGYFSRVFKEETGMTPSQYRKG 305
Cdd:COG2207  226 ELGFSSQSHFSRAFKKRFGVTPSEYRKR 253
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
220-303 2.11e-24

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 94.16  E-value: 2.11e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125   220 EINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKEETGMTP 299
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 645924125   300 SQYR 303
Cdd:smart00342  81 SEYR 84
HTH_18 pfam12833
Helix-turn-helix domain;
226-304 4.49e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 88.03  E-value: 4.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125  226 LSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTE-TRLTLTEICEKVGYTELGYFSRVFKEETGMTPSQYRK 304
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
212-305 7.80e-17

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 78.86  E-value: 7.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 212 FVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVF 291
Cdd:PRK10572 191 YISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVF 270

                         90
                 ....*....|....
gi 645924125 292 KEETGMTPSQYRKG 305
Cdd:PRK10572 271 KKCTGASPSEFRAR 284
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 211-304 3.63e-16

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 77.51  E-value: 3.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 211 EFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRV 290
Cdd:COG4977  217 AWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSASHFRRA 296

                         90
                 ....*....|....
gi 645924125 291 FKEETGMTPSQYRK 304
Cdd:COG4977  297 FRRRFGVSPSAYRR 310
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 211-305 1.47e-13

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 70.08  E-value: 1.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 211 EFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLtETRLTLTEICEKVGYTELGYFSRV 290
Cdd:COG2169   91 RLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAAGFGSLSRFYEA 169

                         90
                 ....*....|....*
gi 645924125 291 FKEETGMTPSQYRKG 305
Cdd:COG2169  170 FKKLLGMTPSAYRRG 184
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
135-303 1.79e-12

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 66.23  E-value: 1.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 135 LKHEAINRfYALLNALADEYVGNEELSLLKIALPSlladaeylEDFSILVKETL-EKLTHFSANAIkdnfdiltliyefv 213
Cdd:PRK13502 133 LEHESNGR-DPLANEMAELLFGQLVMTLKRHRYAT--------DDLPATSRETLlDKLITALANSL-------------- 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 214 qenyEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKE 293
Cdd:PRK13502 190 ----ECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTR 265

                        170
                 ....*....|
gi 645924125 294 ETGMTPSQYR 303
Cdd:PRK13502 266 ETGMTPSQWR 275
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
206-304 7.29e-12

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 64.54  E-value: 7.29e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 206 LTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELG 285
Cdd:PRK13501 178 LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSN 257

                         90
                 ....*....|....*....
gi 645924125 286 YFSRVFKEETGMTPSQYRK 304
Cdd:PRK13501 258 YFSAVFTREAGMTPRDYRQ 276
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
241-303 6.51e-11

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 62.04  E-value: 6.51e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 645924125 241 FTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKEETGMTPSQYR 303
Cdd:PRK13500 243 FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
204-303 5.07e-09

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 53.01  E-value: 5.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 204 DILTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTE 283
Cdd:PRK10219   5 KIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84

                         90       100
                 ....*....|....*....|
gi 645924125 284 LGYFSRVFKEETGMTPSQYR 303
Cdd:PRK10219  85 QQTFSRVFRRQFDRTPSDYR 104
PRK10371 PRK10371
transcriptional regulator MelR;
211-304 1.99e-08

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 54.44  E-value: 1.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 211 EFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRV 290
Cdd:PRK10371 198 GFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYST 277

                         90
                 ....*....|....
gi 645924125 291 FKEETGMTPSQYRK 304
Cdd:PRK10371 278 FGKYVGMSPQQYRK 291
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 268-304 5.11e-08

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 48.30  E-value: 5.11e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 645924125  268 TRLTLTEICEKVGYTElGYFSRVFKEETGMTPSQYRK 304
Cdd:pfam00165   7 TNLTIADIADELGFSR-SYFSRLFKKYTGVTPSQYRH 42
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
214-305 3.64e-06

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 47.36  E-value: 3.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 214 QENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKE 293
Cdd:PRK13503 181 EDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLFRR 260

                         90
                 ....*....|..
gi 645924125 294 ETGMTPSQYRKG 305
Cdd:PRK13503 261 EFSWSPRDIRQG 272
PRK11511 PRK11511
MDR efflux pump AcrAB transcriptional activator MarA;
200-303 3.85e-06

MDR efflux pump AcrAB transcriptional activator MarA;


Pssm-ID: 236920 [Multi-domain]  Cd Length: 127  Bit Score: 45.48  E-value: 3.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 200 KDNFDILTL--IYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICE 277
Cdd:PRK11511   3 RRNTDAITIhsILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAE 82

                         90       100
                 ....*....|....*....|....*.
gi 645924125 278 KVGYTELGYFSRVFKEETGMTPSQYR 303
Cdd:PRK11511  83 RYGFESQQTLTRTFKNYFDVPPHKYR 108
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 177-305 3.95e-05

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 44.64  E-value: 3.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 177 LEDFSILVKETLEKLTHFSANAIKDNFDILTLIYEFVQ------ENYEKEINLqllsekyhfSYSYLSAIFTEKfGINFS 250
Cdd:PRK09685 174 LEALIALLRPALHQRESVQPRRERQFQKVVALIDQSIQeeilrpEWIAGELGI---------SVRSLYRLFAEQ-GLVVA 243

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 645924125 251 KYLKKVRISK--AKLFLTETRLTLTEICEKVGYTELGYFSRVFKEETGMTPSQYRKG 305
Cdd:PRK09685 244 QYIRNRRLDRcaDDLRPAADDEKITSIAYKWGFSDSSHFSTAFKQRFGVSPGEYRRK 300
PRK15340 PRK15340
AraC family transcriptional regulator InvF;
223-299 3.07e-04

AraC family transcriptional regulator InvF;


Pssm-ID: 185240  Cd Length: 216  Bit Score: 41.12  E-value: 3.07e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 645924125 223 LQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFSRVFKEETGMTP 299
Cdd:PRK15340 128 MRMLGEDYGVSYTHFRRLCSRALGGKAKSELRNWRMAQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSP 204
ftrA PRK09393
transcriptional activator FtrA; Provisional
 209-304 4.73e-04

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 41.10  E-value: 4.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 209 IYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKFGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTELGYFS 288
Cdd:PRK09393 223 LIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEESLR 302

                         90
                 ....*....|....*.
gi 645924125 289 RVFKEETGMTPSQYRK 304
Cdd:PRK09393 303 HHFRRRAATSPAAYRK 318
PRK15186 PRK15186
AraC family transcriptional regulator; Provisional
 186-302 5.52e-03

AraC family transcriptional regulator; Provisional


Pssm-ID: 185108 [Multi-domain]  Cd Length: 291  Bit Score: 37.74  E-value: 5.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 186 ETLEKLTHFSANAIKDNfdiltlIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKfGINFSKYLKKVRISKAKLFL 265
Cdd:PRK15186 169 EAFALFRELSQNTLAEN------IYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQE-NTSFSEVYLNARMNKATKLL 241

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 645924125 266 TETRLTLTEICEKVGYTELGYFSRVFKEETGMTPSQY 302
Cdd:PRK15186 242 RNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278
PRK09978 PRK09978
DNA-binding transcriptional regulator GadX; Provisional
 204-303 6.65e-03

DNA-binding transcriptional regulator GadX; Provisional


Pssm-ID: 137624 [Multi-domain]  Cd Length: 274  Bit Score: 37.60  E-value: 6.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645924125 204 DILTLIYEFVQENYEKEINLQLLSEKYHFSYSYLSAIFTEKfGINFSKYLKKVRISKAKLFLTETRLTLTEICEKVGYTE 283
Cdd:PRK09978 142 NMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHS 220

                         90       100
                 ....*....|....*....|
gi 645924125 284 LGYFSRVFKEETGMTPSQYR 303
Cdd:PRK09978 221 VSYFIYVFRNYYGMTPTEYQ 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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