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Conserved domains on  [gi|646369912|ref|WP_025510771|]
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MULTISPECIES: DUF6678 family protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6678 pfam20383
Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. ...
 9-131 5.01e-35

Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 112 and 148 amino acids in length.


:

Pssm-ID: 466532  Cd Length: 122  Bit Score: 117.78  E-value: 5.01e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646369912    9 IIKLIDSNSLFGVMNNTKWNHLLAALSDIDEL-LSYRVTYIDgstwpesDSRYQYTSELAQIWG-----NFRAIHFIDID 82
Cdd:pfam20383   1 LRAIINQRQLVSVMNNTKWNELQSAMRNLLEFsPSYRSKYVD-------GDENGYISFWDGEWWyhllfPFKSIEWIDIR 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 646369912   83 ARISHSRGVLLESEVLDHRDKVIAICKEQNAKISLTECGVRIWGYFQHG 131
Cdd:pfam20383  74 PRYREHRGRLLPPEVIDHTEEILEILKKIGIPYEVEGDGFRIWGYLPKG 122
 
Name Accession Description Interval E-value
DUF6678 pfam20383
Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. ...
 9-131 5.01e-35

Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 112 and 148 amino acids in length.


Pssm-ID: 466532  Cd Length: 122  Bit Score: 117.78  E-value: 5.01e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646369912    9 IIKLIDSNSLFGVMNNTKWNHLLAALSDIDEL-LSYRVTYIDgstwpesDSRYQYTSELAQIWG-----NFRAIHFIDID 82
Cdd:pfam20383   1 LRAIINQRQLVSVMNNTKWNELQSAMRNLLEFsPSYRSKYVD-------GDENGYISFWDGEWWyhllfPFKSIEWIDIR 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 646369912   83 ARISHSRGVLLESEVLDHRDKVIAICKEQNAKISLTECGVRIWGYFQHG 131
Cdd:pfam20383  74 PRYREHRGRLLPPEVIDHTEEILEILKKIGIPYEVEGDGFRIWGYLPKG 122
 
Name Accession Description Interval E-value
DUF6678 pfam20383
Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. ...
 9-131 5.01e-35

Family of unknown function (DUF6678); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 112 and 148 amino acids in length.


Pssm-ID: 466532  Cd Length: 122  Bit Score: 117.78  E-value: 5.01e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646369912    9 IIKLIDSNSLFGVMNNTKWNHLLAALSDIDEL-LSYRVTYIDgstwpesDSRYQYTSELAQIWG-----NFRAIHFIDID 82
Cdd:pfam20383   1 LRAIINQRQLVSVMNNTKWNELQSAMRNLLEFsPSYRSKYVD-------GDENGYISFWDGEWWyhllfPFKSIEWIDIR 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 646369912   83 ARISHSRGVLLESEVLDHRDKVIAICKEQNAKISLTECGVRIWGYFQHG 131
Cdd:pfam20383  74 PRYREHRGRLLPPEVIDHTEEILEILKKIGIPYEVEGDGFRIWGYLPKG 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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