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Conserved domains on  [gi|646378554|ref|WP_025518030|]
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NADH-quinone oxidoreductase subunit NuoH [Bordetella trematum]

Protein Classification

complex I subunit 1/NuoH family protein( domain architecture ID 10002943)

complex I subunit 1/NuoH family protein such as bacterial NADH-quinone oxidoreductase subunit H (NuoH) that is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  7.1.1.-
Gene Ontology:  GO:0048038|GO:0016655|GO:0016020
PubMed:  23417064|24059520|10940377
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 19-353 1.68e-162

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440629  Cd Length: 329  Bit Score: 457.28  E-value: 1.68e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  19 AWLVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAP 98
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  99 VVTLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTV 178
Cdd:COG1005   85 ILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 179 LLVSGSLNMTEIVLGQGRGwfaekgltflSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFAL 258
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGG----------LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 259 FFLGEYANMIFLSAMASIMFLGGWMAPIDIAPLNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:COG1005  235 FFLAEYANMFLVSALATTLFLGGWLGPFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                        330
                 ....*....|....*
gi 646378554 339 GVWLVIVAIWMQTPW 353
Cdd:COG1005  315 LVNLVLTAAVVLLFG 329
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 19-353 1.68e-162

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 457.28  E-value: 1.68e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  19 AWLVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAP 98
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  99 VVTLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTV 178
Cdd:COG1005   85 ILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 179 LLVSGSLNMTEIVLGQGRGwfaekgltflSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFAL 258
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGG----------LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 259 FFLGEYANMIFLSAMASIMFLGGWMAPIDIAPLNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:COG1005  235 FFLAEYANMFLVSALATTLFLGGWLGPFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                        330
                 ....*....|....*
gi 646378554 339 GVWLVIVAIWMQTPW 353
Cdd:COG1005  315 LVNLVLTAAVVLLFG 329
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
21-348 3.68e-148

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 420.75  E-value: 3.68e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  21 LVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVV 100
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 101 TLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLL 180
Cdd:PRK06076  88 AFIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 181 VSGSLNMTEIVLGQgrgwfaekgltFLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFF 260
Cdd:PRK06076 168 LAGSLNLSDIVEAQ-----------FLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFF 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 261 LGEYANMIFLSAMASIMFLGGWMAPIDIAplNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGV 340
Cdd:PRK06076 237 LGEYINMILVSALITTLFLGGWLPPFPLG--GGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLV 314


                 ....*...
gi 646378554 341 WLVIVAIW 348
Cdd:PRK06076 315 NLLLTAAV 322
NADHdh pfam00146
NADH dehydrogenase;
28-346 2.14e-142

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 405.32  E-value: 2.14e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554   28 KIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALA 107
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  108 AWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNM 187
Cdd:pfam00146  81 AFAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  188 TEIVLGQGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANM 267
Cdd:pfam00146 161 SEIVEAQAGGWFI-----------PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANM 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 646378554  268 IFLSAMASIMFLGGWMAPIDiaplnwIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIVA 346
Cdd:pfam00146 230 FLMSALAVTLFLGGWLGPFP------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 19-353 1.68e-162

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 457.28  E-value: 1.68e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  19 AWLVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAP 98
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  99 VVTLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTV 178
Cdd:COG1005   85 ILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 179 LLVSGSLNMTEIVLGQGRGwfaekgltflSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFAL 258
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGG----------LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 259 FFLGEYANMIFLSAMASIMFLGGWMAPIDIAPLNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:COG1005  235 FFLAEYANMFLVSALATTLFLGGWLGPFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                        330
                 ....*....|....*
gi 646378554 339 GVWLVIVAIWMQTPW 353
Cdd:COG1005  315 LVNLVLTAAVVLLFG 329
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
21-348 3.68e-148

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 420.75  E-value: 3.68e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  21 LVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVV 100
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 101 TLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLL 180
Cdd:PRK06076  88 AFIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 181 VSGSLNMTEIVLGQgrgwfaekgltFLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFF 260
Cdd:PRK06076 168 LAGSLNLSDIVEAQ-----------FLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFF 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 261 LGEYANMIFLSAMASIMFLGGWMAPIDIAplNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGV 340
Cdd:PRK06076 237 LGEYINMILVSALITTLFLGGWLPPFPLG--GGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLV 314


                 ....*...
gi 646378554 341 WLVIVAIW 348
Cdd:PRK06076 315 NLLLTAAV 322
NADHdh pfam00146
NADH dehydrogenase;
28-346 2.14e-142

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 405.32  E-value: 2.14e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554   28 KIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALA 107
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  108 AWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNM 187
Cdd:pfam00146  81 AFAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  188 TEIVLGQGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANM 267
Cdd:pfam00146 161 SEIVEAQAGGWFI-----------PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANM 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 646378554  268 IFLSAMASIMFLGGWMAPIDiaplnwIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIVA 346
Cdd:pfam00146 230 FLMSALAVTLFLGGWLGPFP------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 26-346 2.58e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 317.05  E-value: 2.58e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  26 LLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPA 105
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 106 LAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSL 185
Cdd:MTH00054  85 FIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 186 NMTEIVLGQGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYA 265
Cdd:MTH00054 165 NLTEIVLAQKNIWFI-----------FPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYC 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 266 NMIFLSAMASIMFLGGWMAPidIAPLNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIV 345
Cdd:MTH00054 234 HIILMSTFGVILFLGGWLVI--SGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLV 311


                 .
gi 646378554 346 A 346
Cdd:MTH00054 312 S 312
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 20-346 5.69e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 316.29  E-value: 5.69e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  20 WLVVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPV 99
Cdd:MTH00216   3 VFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 100 VTLMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVL 179
Cdd:MTH00216  83 LSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 180 LVSGSLNMTEIVLGQGRGwfaekgltflSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALF 259
Cdd:MTH00216 163 LCVGSLSITEIVLAQNNG----------IWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALF 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 260 FLGEYANMIFLSAMASIMFLGGWMAPIDIaplnWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTG 339
Cdd:MTH00216 233 FLAEYAHIILMSCLTTILFLGGWLSPIKY----FKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSL 308


                 ....*..
gi 646378554 340 VWLVIVA 346
Cdd:MTH00216 309 GVVIFVA 315
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 22-338 4.12e-101

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 301.12  E-value: 4.12e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  22 VVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVT 101
Cdd:MTH00040   3 VILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 102 LMPALAAWAVVPFgPEAVLaNVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLV 181
Cdd:MTH00040  83 LFLALLLWSLIPV-PTPTL-NVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 182 SGSLNMTEIVLGQGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFL 261
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLL-----------FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFI 229

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 646378554 262 GEYANMIFLSAMASIMFLGGWMAPIDIAPLNWIpgwlWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00040 230 AEYANIIFMNLLSVILFLGGGSPFNEIFPINII----IVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLS 302
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 26-349 6.76e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 292.54  E-value: 6.76e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  26 LLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPA 105
Cdd:MTH00143   4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 106 LAAWAVVPfgPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSL 185
Cdd:MTH00143  84 LLLWQLYP--SYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 186 NMTEIVLGQgrgwfaekgltFLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYA 265
Cdd:MTH00143 162 SFIEISESQ-----------FSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 266 NMIFLSAMASIMFLGGWMAPIdiaplnwIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIV 345
Cdd:MTH00143 231 NILFMSLLTVVLFFGGSSVLF-------LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLF 303


                 ....
gi 646378554 346 AIWM 349
Cdd:MTH00143 304 VVLV 307
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 33-338 1.29e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 277.16  E-value: 1.29e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  33 AVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAAWAVV 112
Cdd:MTH00111  15 IIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 113 PFgPEAvLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVL 192
Cdd:MTH00111  95 PM-PFP-LADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLAT 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 193 GQGRGWfaekgLTFLSWnwlpllPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSA 272
Cdd:MTH00111 173 TQEPLW-----LIFSSW------PLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 646378554 273 MASIMFL--GGWMAPIDIAPLNwipgwlwLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00111 242 LTTILFLnpSTLNLPPELFTIN-------LMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLT 302
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 27-346 2.10e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 277.28  E-value: 2.10e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  27 LKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPAL 106
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 107 AAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLN 186
Cdd:MTH00029  91 LAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 187 MTEIVLGQGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYAN 266
Cdd:MTH00029 171 ISEIVISQRSVWLI-----------IPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSN 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 267 MIFLSAMASIMFLGGWMAPIDIAP-----------LNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFI 335
Cdd:MTH00029 240 IILMSCMMTIFFLGGWLSPLDGIPtppeafsifeqIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYL 319

                        330
                 ....*....|.
gi 646378554 336 PLTGVWLVIVA 346
Cdd:MTH00029 320 PLSLGLVILTA 330
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 26-349 4.24e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 272.94  E-value: 4.24e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  26 LLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPA 105
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 106 LAAWAVVPFgpEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSL 185
Cdd:MTH00218  85 LLLWMPLPL--PFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 186 NMTEIVLGQGrgwfaekgltfLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYA 265
Cdd:MTH00218 163 SLEGFNLTQE-----------TIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYM 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 266 NMIFLSAMASIMFLGGWMAPIdiaplnwipgwlWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT-GVWLVI 344
Cdd:MTH00218 232 NILFMNTLSVILFLGTSLTTI------------NLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSlALLLLH 299


                 ....*
gi 646378554 345 VAIWM 349
Cdd:MTH00218 300 TSLPL 304
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 34-338 7.80e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 272.03  E-value: 7.80e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  34 VPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAAWAVVP 113
Cdd:MTH00193  13 ICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 114 FgpEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVLG 193
Cdd:MTH00193  93 Y--LFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNY 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 194 QGRGWFaekglTFLSWnwlpllPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSAM 273
Cdd:MTH00193 171 QKYIWF-----IFFSF------PLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSML 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 646378554 274 ASIMFLGGWMAPIdiaplnwipgwlWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00193 240 FVLMFLGGDLLSL------------LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLS 292
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 26-338 1.00e-89

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 272.27  E-value: 1.00e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  26 LLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPA 105
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 106 LAAWAVVPFgPEAvLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSL 185
Cdd:MTH00104  83 LTMWIPLPM-PYP-LINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 186 NMTEIVLGQGRGWfaekgLTFLSWnwlpllPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYA 265
Cdd:MTH00104 161 TLSTLITTQEHLW-----LIFPSW------PLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYA 229

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 646378554 266 NMIFLSAMASIMFLGGWMAPI--DIAPLNWIpgwlwlgIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00104 230 NIIMMNALTTILFLGAFHNPYmpELYTTNFT-------IKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLT 297
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 34-338 1.05e-88

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 269.57  E-value: 1.05e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  34 VPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAAWAVVP 113
Cdd:MTH00071  16 IPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLP 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 114 FgPEAvLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVLG 193
Cdd:MTH00071  96 M-PNN-LSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 194 QGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSAM 273
Cdd:MTH00071 174 QEFMWLI-----------IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 646378554 274 ASIMFLGGwmapidiAPLNWIPGW--LWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00071 243 STILFLGS-------TYNHLQPELstMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPIT 302
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 34-338 1.37e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 266.86  E-value: 1.37e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  34 VPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAAWAVVP 113
Cdd:MTH00134  17 VPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMP 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 114 FgPEAVlANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVLG 193
Cdd:MTH00134  97 M-PYPV-TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTA 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 194 QGRGWFAekgltflswnwLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSAM 273
Cdd:MTH00134 175 QESIWLL-----------LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 646378554 274 ASIMFLGGWMAPI--DIAPLNWIpgwlwlgIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLT 338
Cdd:MTH00134 244 SAILFLGASHIPTlpELTTINLM-------TKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLT 303
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 23-349 2.71e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 265.36  E-value: 2.71e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  23 VWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTL 102
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 103 MPALAAWAVVPFGPEavLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVS 182
Cdd:MTH00225  81 ILSLILWSLYPSMFS--IYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 183 GSLNMTEIVLGQGRGWFaekgltflswnWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLG 262
Cdd:MTH00225 159 LTYNLFDFSYNQKYFWF-----------MFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMA 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 263 EYANMIFLSAMASIMFLGGWMAPIDIaplnwipgwlWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWL 342
Cdd:MTH00225 228 EYGSILFMSMLTSILFFGGFFVTIDL----------FLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYL 297


                 ....*...
gi 646378554 343 VIV-AIWM 349
Cdd:MTH00225 298 FMVlIILM 305
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 25-349 8.83e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 251.59  E-value: 8.83e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  25 TLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMP 104
Cdd:MTH00195   4 SVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 105 ALAAWAVVPFGPEAVlaNVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGS 184
Cdd:MTH00195  84 ALILWVPIPSPFGFS--SINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 185 LNMTEIVLGQGRGWFAekgltFLSWnwlpllPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEY 264
Cdd:MTH00195 162 FDFTIMVISQGFSWVI-----LLCP------PISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEY 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 265 ANMIFLSAMASIMFLGGWMAPIdiaplnwipgwlwLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVI 344
Cdd:MTH00195 231 SNIIFMSVLTTILFLGGGGTII-------------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIP 297


                 ....*
gi 646378554 345 VAIWM 349
Cdd:MTH00195 298 LAAIP 302
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 34-353 4.38e-78

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 241.99  E-value: 4.38e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  34 VPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAAWAVVP 113
Cdd:MTH00010  14 VMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYP 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 114 FGPEAVLanVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVLG 193
Cdd:MTH00010  94 HKHPSFF--LKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 194 QgrgwfaekgltfLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSAM 273
Cdd:MTH00010 172 Q------------YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLF 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 274 ASIMFLgGWMAPIDIAPlnwipgwLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIVAIWMQTPW 353
Cdd:MTH00010 240 TSVFFT-SFIPSIFISD-------LMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ndhA CHL00032
NADH dehydrogenase subunit 1
 22-337 1.38e-63

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 206.34  E-value: 1.38e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  22 VVWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVT 101
Cdd:CHL00032  26 LIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIA 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 102 LMPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLV 181
Cdd:CHL00032 106 VISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 182 SGSLNMTEIVLGQGRgwfaekgLTFLSWNwLPLLPL-FVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFF 260
Cdd:CHL00032 186 SNSLSTVDIVEAQSK-------YGFWGWN-LWRQPIgFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 261 LGEYANMIFLSAMASIMFLGGWMAPIDIAP-------------LNWIPGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIM 327
Cdd:CHL00032 258 VASYLNLLVSSLFVTVLYLGGWNLSIPYIFipelfeinktggvFGTTIGIFITLAKTYLFLFISITTRWTLPRLRMDQLL 337

                        330
                 ....*....|
gi 646378554 328 RLGWKIFIPL 337
Cdd:CHL00032 338 NLGWKFLLPI 347
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 29-350 4.33e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 184.72  E-value: 4.33e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  29 IVGIAVPVILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVAPVVTLMPALAA 108
Cdd:MTH00090   2 LLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 109 WAVVPFgpEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLnmt 188
Cdd:MTH00090  82 WFVLPY--FFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSF--- 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 189 eivlgqgrgwfaekglTFLSWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMI 268
Cdd:MTH00090 157 ----------------SFVSSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLI 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 269 FLSAMASIMFLGGWMapidiaplnwipgwlwlgIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIVAIW 348
Cdd:MTH00090 221 FFSVLTSVLFFKFSF------------------LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282


                 ..
gi 646378554 349 MQ 350
Cdd:MTH00090 283 FI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 36-345 7.58e-38

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 136.98  E-value: 7.58e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  36 VILCVAYLTYWERKMIGWMHVRLGPNRVGFKGLLQPFADVFKLLTKEVVLPSAANKVLFIVApvVTLMPALAAWAVVPFG 115
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFG--VFLLVLLVVFYCFIYG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 116 PEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVSGSLNMTEIVLGQG 195
Cdd:MTH00058  92 SYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGW 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 196 rgwfaekgltflsWNWLPLLPLFVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMIFLSAMAS 275
Cdd:MTH00058 172 -------------LSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGS 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 276 IMFLGgwmapidiaplnwipGWLWLGIKTFCVVsMFIWFRASFPRYRYDQIMRLGWKIFIPLTGVWLVIV 345
Cdd:MTH00058 239 VLFFG---------------GGFVSIMLLFHLL-FFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVI 292
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
23-335 1.60e-35

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 131.07  E-value: 1.60e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554  23 VWTLLKIVGIAVPVILCVAYLTYWERKMIGWMHVRLGPnrvgfkGLLQPFADVFKLLTKEVVLPSAANkVLFIVAPVVTL 102
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 103 MPALAAWAVVPFGPEAVLANVNAGLLYVMAITSVGVYGVIVAGWASNSKYAFLGALRASAQMLSYELAISFVLVTVLLVS 182
Cdd:COG0650   74 AAMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 646378554 183 GSLNMTEIVLGQGRGwfaekgltfLSWNWLPLLPL-FVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFL 261
Cdd:COG0650  154 GSTSLSDIVAYQAAH---------GPLLLSPSLLLaAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLEL 224

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 646378554 262 GEYANMIFLSAMASIMFLGGWMAPIDIAplnwipGWLWLGIKTFCVVSMFIWFRASFPRYRYDQIMRLGWKIFI 335
Cdd:COG0650  225 AAALKLFVLLSLFVNLFLPWGIALTLLL------ALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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