NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|647183890|ref|WP_025660006|]
View 

UDP binding domain-containing protein, partial [Rhizobium sp. IBUN]

Protein Classification

UDP-glucose dehydrogenase family protein( domain architecture ID 1903913)

UDP-glucose dehydrogenase family protein similar to UDP-glucose dehydrogenase which catalyzes the conversion of UDP-glucose into UDP-glucuronate, one of the precursors of teichuronic acid.

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Ugd super family cl43304
UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];
1-143 2.49e-73

UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG1004:

Pssm-ID: 440628 [Multi-domain]  Cd Length: 436  Bit Score: 225.29  E-value: 2.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGP-ITYG 79
Cdd:COG1004  293 NERQKRRLVEKIREHLGGDLKGKTIAVLGLAFKPNTDDMRESPALDIIEALLEAGARVRAYDPVAMENARRLLPDdITYA 372
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647183890  80 RDPYEIAEGADAIVIVTEWDEFRALDLKRMKSLVKTPTIVDLRNIYPVAEVTKHGFSYFAIGKK 143
Cdd:COG1004  373 DDAYEALEGADALVILTEWPEFRALDFARLKALMKGPVIFDGRNLLDPEELRAAGFTYYGIGRP 436
 
Name Accession Description Interval E-value
Ugd COG1004
UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];
1-143 2.49e-73

UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440628 [Multi-domain]  Cd Length: 436  Bit Score: 225.29  E-value: 2.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGP-ITYG 79
Cdd:COG1004  293 NERQKRRLVEKIREHLGGDLKGKTIAVLGLAFKPNTDDMRESPALDIIEALLEAGARVRAYDPVAMENARRLLPDdITYA 372
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647183890  80 RDPYEIAEGADAIVIVTEWDEFRALDLKRMKSLVKTPTIVDLRNIYPVAEVTKHGFSYFAIGKK 143
Cdd:COG1004  373 DDAYEALEGADALVILTEWPEFRALDFARLKALMKGPVIFDGRNLLDPEELRAAGFTYYGIGRP 436
UDPG_MGDP_dh_C smart00984
UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes ...
26-126 2.98e-41

UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.


Pssm-ID: 214954 [Multi-domain]  Cd Length: 99  Bit Score: 133.01  E-value: 2.98e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890    26 AVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIgpITYGRDPYEIAEGADAIVIVTEWDEFRALD 105
Cdd:smart00984   1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAMEEAREYG--LTYVSDLEEALKGADAVVIATEHDEFRSLD 78
                           90       100
                   ....*....|....*....|.
gi 647183890   106 LKRMKSLVKTPTIVDLRNIYP 126
Cdd:smart00984  79 PEELKDLMKKPVVVDGRNILD 99
UDPG_MGDP_dh_C pfam03720
UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; The UDP-glucose/GDP-mannose ...
26-125 1.69e-40

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.


Pssm-ID: 427462 [Multi-domain]  Cd Length: 103  Bit Score: 131.16  E-value: 1.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   26 AVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGP-ITYGRDPYEIAEGADAIVIVTEWDEFRAL 104
Cdd:pfam03720   1 AVLGLAFKPNTDDLRESPALDIIELLLEEGAEVKVYDPYVPEEAIEALGDgVTLVDDLEEALKGADAIVILTDHDEFKSL 80
                          90       100
                  ....*....|....*....|.
gi 647183890  105 DLKRMKSLVKTPTIVDLRNIY 125
Cdd:pfam03720  81 DWEKLKKLMKPPVVFDGRNVL 101
NDP-sugDHase TIGR03026
nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent ...
1-123 2.76e-37

nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22), GDP-mannose 6-dehydrogenase (1.1.1.132), UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase, and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.


Pssm-ID: 274399 [Multi-domain]  Cd Length: 409  Bit Score: 131.19  E-value: 2.76e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890    1 NDNRKRAMGRKVIAACdGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGPITygr 80
Cdd:TIGR03026 291 NDSQPDYVVEKIKDLL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPSID--- 366
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 647183890   81 DPYEIAEGADAIVIVTEWDEFRALDLKRMKSLVKTPTIVDLRN 123
Cdd:TIGR03026 367 DLEEALKGADALVILTDHSEFKDLDLEKIKDLMKGKVVVDTRN 409
PLN02353 PLN02353
probable UDP-glucose 6-dehydrogenase
1-142 2.15e-30

probable UDP-glucose 6-dehydrogenase


Pssm-ID: 177986 [Multi-domain]  Cd Length: 473  Bit Score: 113.62  E-value: 2.15e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPE--------GMEMAK-- 70
Cdd:PLN02353 303 NDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQvteeqiqrDLSMNKfd 382
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  71 ------------EVIGPITYGRDPYEIAEGADAIVIVTEWDEFRALDLKRM-KSLVKTPTIVDLRNIYPVAEVTKHGFSY 137
Cdd:PLN02353 383 wdhprhlqpmspTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIyDNMQKPAFVFDGRNVLDHEKLREIGFIV 462

                 ....*
gi 647183890 138 FAIGK 142
Cdd:PLN02353 463 YSIGK 467
UDPGDh_AglM NF041297
UDP-glucose 6-dehydrogenase AglM;
19-124 2.28e-27

UDP-glucose 6-dehydrogenase AglM;


Pssm-ID: 469194 [Multi-domain]  Cd Length: 429  Bit Score: 104.99  E-value: 2.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  19 NVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGPITYGRDPYEIAEGADAIVIVTEW 98
Cdd:NF041297 313 DVAGERVAVLGLAFKPGTDDVRNSRAIPVIEGLQERGADVVAYDPVATENMRERFPDIEYADSAADALDGADGALVVTDW 392
                         90       100
                 ....*....|....*....|....*...
gi 647183890  99 DEFRALD--LKRMkslvKTPTIVDLRNI 124
Cdd:NF041297 393 DEFAALDeeFDAM----ATPVVVDGRRI 416
 
Name Accession Description Interval E-value
Ugd COG1004
UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];
1-143 2.49e-73

UDP-glucose 6-dehydrogenase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440628 [Multi-domain]  Cd Length: 436  Bit Score: 225.29  E-value: 2.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGP-ITYG 79
Cdd:COG1004  293 NERQKRRLVEKIREHLGGDLKGKTIAVLGLAFKPNTDDMRESPALDIIEALLEAGARVRAYDPVAMENARRLLPDdITYA 372
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647183890  80 RDPYEIAEGADAIVIVTEWDEFRALDLKRMKSLVKTPTIVDLRNIYPVAEVTKHGFSYFAIGKK 143
Cdd:COG1004  373 DDAYEALEGADALVILTEWPEFRALDFARLKALMKGPVIFDGRNLLDPEELRAAGFTYYGIGRP 436
UDPG_MGDP_dh_C smart00984
UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes ...
26-126 2.98e-41

UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.


Pssm-ID: 214954 [Multi-domain]  Cd Length: 99  Bit Score: 133.01  E-value: 2.98e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890    26 AVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIgpITYGRDPYEIAEGADAIVIVTEWDEFRALD 105
Cdd:smart00984   1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAMEEAREYG--LTYVSDLEEALKGADAVVIATEHDEFRSLD 78
                           90       100
                   ....*....|....*....|.
gi 647183890   106 LKRMKSLVKTPTIVDLRNIYP 126
Cdd:smart00984  79 PEELKDLMKKPVVVDGRNILD 99
UDPG_MGDP_dh_C pfam03720
UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; The UDP-glucose/GDP-mannose ...
26-125 1.69e-40

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.


Pssm-ID: 427462 [Multi-domain]  Cd Length: 103  Bit Score: 131.16  E-value: 1.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   26 AVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGP-ITYGRDPYEIAEGADAIVIVTEWDEFRAL 104
Cdd:pfam03720   1 AVLGLAFKPNTDDLRESPALDIIELLLEEGAEVKVYDPYVPEEAIEALGDgVTLVDDLEEALKGADAIVILTDHDEFKSL 80
                          90       100
                  ....*....|....*....|.
gi 647183890  105 DLKRMKSLVKTPTIVDLRNIY 125
Cdd:pfam03720  81 DWEKLKKLMKPPVVFDGRNVL 101
NDP-sugDHase TIGR03026
nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent ...
1-123 2.76e-37

nucleotide sugar dehydrogenase; Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22), GDP-mannose 6-dehydrogenase (1.1.1.132), UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase, and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.


Pssm-ID: 274399 [Multi-domain]  Cd Length: 409  Bit Score: 131.19  E-value: 2.76e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890    1 NDNRKRAMGRKVIAACdGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGPITygr 80
Cdd:TIGR03026 291 NDSQPDYVVEKIKDLL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPSID--- 366
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 647183890   81 DPYEIAEGADAIVIVTEWDEFRALDLKRMKSLVKTPTIVDLRN 123
Cdd:TIGR03026 367 DLEEALKGADALVILTDHSEFKDLDLEKIKDLMKGKVVVDTRN 409
PLN02353 PLN02353
probable UDP-glucose 6-dehydrogenase
1-142 2.15e-30

probable UDP-glucose 6-dehydrogenase


Pssm-ID: 177986 [Multi-domain]  Cd Length: 473  Bit Score: 113.62  E-value: 2.15e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPE--------GMEMAK-- 70
Cdd:PLN02353 303 NDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQvteeqiqrDLSMNKfd 382
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  71 ------------EVIGPITYGRDPYEIAEGADAIVIVTEWDEFRALDLKRM-KSLVKTPTIVDLRNIYPVAEVTKHGFSY 137
Cdd:PLN02353 383 wdhprhlqpmspTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIyDNMQKPAFVFDGRNVLDHEKLREIGFIV 462

                 ....*
gi 647183890 138 FAIGK 142
Cdd:PLN02353 463 YSIGK 467
UDPGDh_AglM NF041297
UDP-glucose 6-dehydrogenase AglM;
19-124 2.28e-27

UDP-glucose 6-dehydrogenase AglM;


Pssm-ID: 469194 [Multi-domain]  Cd Length: 429  Bit Score: 104.99  E-value: 2.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  19 NVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDPEGMEMAKEVIGPITYGRDPYEIAEGADAIVIVTEW 98
Cdd:NF041297 313 DVAGERVAVLGLAFKPGTDDVRNSRAIPVIEGLQERGADVVAYDPVATENMRERFPDIEYADSAADALDGADGALVVTDW 392
                         90       100
                 ....*....|....*....|....*...
gi 647183890  99 DEFRALD--LKRMkslvKTPTIVDLRNI 124
Cdd:NF041297 393 DEFAALDeeFDAM----ATPVVVDGRRI 416
WecC COG0677
UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell wall/membrane/envelope biogenesis];
10-126 6.71e-26

UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440441 [Multi-domain]  Cd Length: 413  Bit Score: 100.91  E-value: 6.71e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  10 RKVIAACDGNVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDP--EGMEMAKEVIGPITYGrdpyEIAE 87
Cdd:COG0677  300 VKALNEAGKSLKGARVLVLGLAYKENVDDLRESPALDIIEELREYGAEVDVHDPyvDEEEVEGEYGELVDLE----EALE 375
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 647183890  88 GADAIVIVTEWDEFRALDLKRMKsLVKTPTIVDLRNIYP 126
Cdd:COG0677  376 GADAVVLAVDHDEFDELDPEELR-LKGAKVVVDTRGVLD 413
wecC PRK11064
UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
24-120 3.12e-08

UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional


Pssm-ID: 182940 [Multi-domain]  Cd Length: 415  Bit Score: 51.14  E-value: 3.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890  24 KIAVLGLTFKPNTDDMRDAPSITIIQALLD-GGANV*AYDPEGMEMAKEVIGPITYGRDPYEIAEgADAIVIVTEWDEFR 102
Cdd:PRK11064 322 KIACFGLAFKPNIDDLRESPAMEIAELIAQwHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALAT-ADVLVMLVDHSQFK 400
                         90
                 ....*....|....*...
gi 647183890 103 ALDlkrmKSLVKTPTIVD 120
Cdd:PRK11064 401 AIN----GDNVHQQWVVD 414
PRK15182 PRK15182
Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB;
1-129 1.69e-05

Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB;


Pssm-ID: 185104 [Multi-domain]  Cd Length: 425  Bit Score: 43.14  E-value: 1.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647183890   1 NDNRKRAMGRKVIAACDG---NVRGKKIAVLGLTFKPNTDDMRDAPSITIIQALLDGGANV*AYDP--EGMEMAKEvigp 75
Cdd:PRK15182 290 NDNMGNYVSEQLIKAMIKkgiNVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPwvDAEEVRRE---- 365
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 647183890  76 itYGRDPYEIAEGA--DAIVIVTEWDEFRALDLKRMKSLVKTPTIV-DLRNIYPVAE 129
Cdd:PRK15182 366 --YGIIPVSEVKSShyDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLyDLKYVLPAEQ 420
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH