|
Name |
Accession |
Description |
Interval |
E-value |
| auto_Ag43 |
NF033177 |
Ag43/Cah family autotransporter adhesin; Members of this family, restricted to Escherichia ... |
1-948 |
0e+00 |
|
Ag43/Cah family autotransporter adhesin; Members of this family, restricted to Escherichia coli (including E. coli K-12) are the autotransporter adhesin Ag43 (antigen 43), also known as flu, or its calcium-binding homolog Cah, differing mostly in the central region. The C-terminal region forms an outer membrane beta-barrel autotransporter domain, which enables type V secretion (autotransport).
Pssm-ID: 467980 [Multi-domain] Cd Length: 948 Bit Score: 1575.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 1 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTA 80
Cdd:NF033177 1 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTSVPALAADTVVQAGETVNGGTLTNHDNQIVFGTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 81 NGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHE 160
Cdd:NF033177 81 NGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGTASDTVIRDGGGQSLNGLAVNTTLNGGEQWVHE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 161 GGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGD 240
Cdd:NF033177 161 GGIATGTVINEKGWQAVKSGALATDTVVNTGAEGGPDAENGDTGQTVYGTAERTTINKNGRQIVAASGTANTTVVYAGGD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 241 QTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA 320
Cdd:NF033177 241 QTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQVVKEGGLAGNTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 321 TVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNA 400
Cdd:NF033177 321 TVTGTNRLGNFSVENGKADNVVLENGGRLDVLEGHSAQNTLVDDGGTLAVSAGGKATTVTMTSGGALIADSGATVEGTNA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 401 SGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE 480
Cdd:NF033177 401 SGKFSIDGISGQASGLLLENGGSFTVNAGGQASNTTVGYRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 481 IRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLG 560
Cdd:NF033177 481 IRFDNQTTPDAALSRAVAKSNSPVTFHKLTTSNLTGQGGTINMRVTLDGSNVSDQLVINGGQATGKTWLAFTNVGNSNLG 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 561 VATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSR 640
Cdd:NF033177 561 VATTGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 641 SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDD 720
Cdd:NF033177 641 SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 721 GSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLHY 800
Cdd:NF033177 721 GSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQY 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 801 TWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRG 880
Cdd:NF033177 801 TWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRG 880
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 647242702 881 DMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:NF033177 881 DMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNMTF 948
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
98-832 |
1.58e-40 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 162.52 E-value: 1.58e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 98 NTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQ--GQAVNTTLNGGEQWVHEGGIATGTVINEKGWQ 175
Cdd:NF033176 402 NSGRENVSNGGSAYNTIINAGGNQYIYSNGEASGTTVNTSGFQRVNsgGTATGTKLSGGNQNVSSGGKAIAAEVYSGGKQ 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 176 AVKSGAMATDTVVNTGA---------EGGPDAENGDTGQFVrGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTV--H 244
Cdd:NF033176 482 TVYAGGEASGTQIFDGGvvnvsggsvSGASVNLNGRLNVFA-GNVTGTILNQEGRQYIYSGASATSTVANNEGREYVlsG 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 245 GHALDTTLN-GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVT 323
Cdd:NF033176 561 GVADGTVLNsGGLQAVSSGGSASATVINEGGSQFVYEGGNVTGTVIKNGGAIRVDSGASALNIALSSGGNLFTSTGATVT 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 324 GSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEG------ 397
Cdd:NF033176 641 GTNHYGSFSVSQNHASNVVLENGGLLAVTSGSTATDTTVNSAGRLRIDEGGALDGTTTINADGIVAGAKIKNDGdfilnl 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 398 -----------------TNASGKFSIDGTSGQASGLLLENGGsFTVNAGGLASNTTVGHRGTLTLAAGGSLSGrtQLSKG 460
Cdd:NF033176 721 agdydfntelsgngalvKDNSGVMSYEGTLTQARGVNVKNGG-IILGSAVVNADMAVSQNAYINISDQATING--SVNNK 797
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 461 ASMVLNGDVVStGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPV-------TFHKLTTSNLTGQ-GGTINMRVRLDGSNT 532
Cdd:NF033176 798 GSVVINNSIIN-GNITNDADLSFGTAKLLSATVNGSLVNNKNIIlnptkesAGNTLTVSNYTGTpGSVISLGGVLEGDNS 876
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 533 SDQLVINGGQATGKTWLAFTNVGNSnlgvatSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDS-----DEDW 607
Cdd:NF033176 877 LTDRLVVKGNTSGQSDIVYVNEGGS------GGQTIEGINIISVEGNSDAEFSLKNRVVAGAYDYTLQKGNvsgtdKKGW 950
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 608 YLRSE------NAYRAEVPLYTSMLTQAMDYDRILAGSRSHQTGVNG----ENNSVRLSIQGGHlghdNNGGIARGATPE 677
Cdd:NF033176 951 YLTSHlptsdtRQYRPENGSYATNMALANSLFLMDLNERKQFSAVNDntqpESASVWMKITGGR----TSGKLSDGQNKT 1026
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 678 SSGSYgFVRLEGDLLRTEVAGMSLTT----GVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVA 753
Cdd:NF033176 1027 TTNQF-INQLGGDIYKYHAEKLGDFTlgimGGYANAKGKTINHTSKKGARNTLDGYSAGLYGTWYQNGANATGLFAETWM 1105
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 754 QGTRHSMKASSDN--------NDFRAR-GWGWLGSLETGL-PFSITDNLMLEPQLHYTWQGLSLDDGQDNAGYVKFGHGS 823
Cdd:NF033176 1106 QYNWFNASVKGDGleeekynlNGLTASvGGGYNLNVHTWTsPEGIKGEFWLQPHLQAVWMGVTPDTHQEDNGTVVQGTGK 1185
|
810
....*....|
gi 647242702 824 AQ-HVRAGFR 832
Cdd:NF033176 1186 NNlQTKAGIR 1195
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
105-948 |
9.90e-40 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 158.96 E-value: 9.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 105 QNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMAT 184
Cdd:COG3468 7 GGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 185 DTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGT 264
Cdd:COG3468 87 NSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 265 ASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLE 344
Cdd:COG3468 167 GSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 345 SGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSG------SALIADSGATVEGTNASGKFSIDGTSGQASGLLL 418
Cdd:COG3468 247 GTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGggggasGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGS 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 419 ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALS---- 494
Cdd:COG3468 327 GGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNnggg 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 495 --RAVAKGDSPVTFHKLTTS-NLTGQGGTINMRVRL-DGSNTSDQLVINGGqATGKTWLAFTNVGNSnlgVATSGQGIRV 570
Cdd:COG3468 407 gvGGGGGGGLTLTGGTLTVNgNYTGNNGTLVLNTVLgDDNSPTDRLVVNGN-TSGTTGVRVNNAGGL---GAQTVNGIEV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 571 VDAqNGATTeeGAFALSRPLQAGAFNYTLNR----DSDEDWYLRSE--------NAYRAEVPLYTSMLTQAMDYDRIL-- 636
Cdd:COG3468 483 VEV-NGASD--GAFTLGGRVVAGAYEYTLYQggsgGDDGNWYLRSTltppdpptPVYRPEVPSYLANPAAANGLFELGtl 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 637 ---AGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGiargaTPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSS 713
Cdd:COG3468 560 hdrLGERRYTDTGESDNSGAWLRVEGGHNRSRDSSG-----QLDYDSNRYGLQLGGDLLQWEDGGGRLHVGVMAGYGNGD 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 714 VDVKDDDgSRAGTVRDDAGSLGGYLNLTHtSSGLWADIVAQGTRHSMKASSDNNDFRA---RGWGWLGSLETGLPFSITD 790
Cdd:COG3468 635 SDVRSRA-TGTGKGDVDGYSLGLYGTWYG-NNGFYVDGVLQYSWFDNDVSSDDLGGVTgsyDGNGYSASLEAGYPFKLGE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 791 NLMLEPQLHYTWQGLSLDDGQDNAG-YVKFGHGSAQHVRAGFRLGshndmsfGEGTSSRDTLrdsakhrvrelpVNWWVQ 869
Cdd:COG3468 713 GWSLEPQAQLIYQGVDFDDFTDSNGtRVSGDDGDSLQGRLGLRLG-------YEFHWDDGRA------------LQPYLE 773
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647242702 870 PSVIRTFSSRGDMSMgtaaagSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:COG3468 774 ANWLHEFLGDNSVTV------NGVSFSQDGSGTWGELGLGVTGQLNKNLSLYGDVGYQTGLDGYDSSDTSGNLGVRYSF 846
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
5-480 |
2.08e-39 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 159.05 E-value: 2.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 5 LNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVvqAGETVSGGTLTNHDNQIVF--GTANG 82
Cdd:NF033176 1 MNKAYSIVWNHSRQAWVVASELARGHGFVLAKNTLLVLAVASTIGNAFAQNI--SSGVVSGGVVSSGETQVVYsnGQTSN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 83 MTISTGLEYGPDNEANT--------GGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISaGGGQSLQ--GQAVNTTL- 151
Cdd:NF033176 79 ATVNSGGIQNVNNGGKTtsttvnssGAQNVGNSGTAISTIVNSGGVQRVSSGGVTSATSLS-GGAQNIYnlGHASNTVIf 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 152 NGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTgaeggpdaeNGDTGQFVRGNAVRTTINENGRQIVAAEGTAN 231
Cdd:NF033176 158 NGGNQTIFSGGISDDTNISSGGQQRVSSGGVASNTTINS---------SGTQNILSGGSTVSTHISSGGNQYISAGGNAS 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 232 TTVVYAGGDQTVH--GHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLK 309
Cdd:NF033176 229 ATVVSSGGFQRVSsgGTATGTVLSGGTQNVSSGGSAISTSVYSSGVQTVYAGATVTDTTVNSGGKQNISSGGIVSGTIVN 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 310 QGGALVTSTAATVTGSNRLGNFTVEN-GNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALI 388
Cdd:NF033176 309 SSGTQNIYSGGSALSANIKGSQIVNSdGTAINTLVNDGGYQHIRNGGVASGTIINQSGRVNISSGGYAESTIINSGGTQS 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 389 ADSGATVEGT--NASGKFSIDgTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGrTQLSKGASMVLN 466
Cdd:NF033176 389 VLSGGYASGTliNNSGRENVS-NGGSAYNTIINAGGNQYIYSNGEASGTTVNTSGFQRVNSGGTATG-TKLSGGNQNVSS 466
|
490
....*....|....
gi 647242702 467 GDVVSTGDIVNAGE 480
Cdd:NF033176 467 GGKAIAAEVYSGGK 480
|
|
| PL2_Passenger_AT |
cd01344 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ... |
422-616 |
1.94e-29 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain] Cd Length: 188 Bit Score: 115.86 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 422 GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNgdvvSTGDIVNAGEIRFDNQTTPDAalSRAVAKGD 501
Cdd:cd01344 1 GTITGNGGWKLGGDLTLGGGALTLTTSLTLTGTLLTGGAGTLTLD----STSTWNITGTSTLNVGNLTNA--GTIDLGNG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 502 SPVTFHKLTTSNLTGQGGTINMRVRLDGSN-TSDQLVINGGqATGKTWLAFTNVGNSNlgvATSGQGIRVVDAQNgaTTE 580
Cdd:cd01344 75 SPAGGTLTITGNYTGNGGTLRLNTVLGDDDsPTDRLVIDGD-ASGTTRVAVNNAGGSG---ATTGNGIEVVEVGG--TSS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 647242702 581 EGAFALSRPLQAGAFNYTLNRDS----DEDWYLRSENAYR 616
Cdd:cd01344 149 NGAFSLAGRVVAGAYEYRLYRGGvsgnDGNWYLRSELAPP 188
|
|
| autotrans_barl |
TIGR01414 |
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ... |
505-948 |
8.61e-24 |
|
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain] Cd Length: 431 Bit Score: 105.54 E-value: 8.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 505 TFHKLTTSNLTGQGGTINMRVRLDGSN-TSDQLVINGgQATGKTWLAFTNVGNSNlgvATSGQGIRVVDAQNGAtteEGA 583
Cdd:TIGR01414 4 AFNTLTVNGLYTGNGGFVMNTDLGGDNsQTDRLVVNG-NASGTTGVVVNNIGGEG---AQTGDGITLVTVNGGS---DAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 584 FALSRP-LQAGAFNYTLNRD---SDEDWYLRS------------ENAYRAEVPLYTSMLTQAMDY---DRILAGSRSHQT 644
Cdd:TIGR01414 77 FTLANGkVDAGAYTYTLYKNgteDNNNWYLTSslpdltppgqqlSPTYRAEAGSYAANANAALFLaelDTLRQRMGDLRS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 645 GVNGENNSVRLSIQGGHLGHDNNGGIARgatpeSSGSYGFVRLEGDLLRTEVAGMSLTTGVhgAAGHSSVDVKDDDGSRA 724
Cdd:TIGR01414 157 AARDAGNGVWARIFGGDNHLDGDAGAAG-----YDQNTTGVQLGGDILLAGNADGDLHVGL--MAGYAKADIKTRSYKYG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 725 GTVRDDAGSLGGYLnLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARG----WGWLGSLETGLPFSITDN-LMLEPQLH 799
Cdd:TIGR01414 230 GKGKVDGYGLGLYG-TWLQDSGAYVDGVLQYSRFRNDVSSTGSNGKVSGkynsNGFTASLEAGYRYNLGGNgWYVEPQAQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 800 YTWQGLSLDDGQDNAG-YVKFGHGSAQHVRAGFRLGSHNDMsfGEGTSSRDTLRdsakhrvrelpVNWwvqpsvIRTFSS 878
Cdd:TIGR01414 309 LSYFGVSGDDYKESNGtRVLGGGGDSLQGRLGLRVGYQFDL--GTGRAVKPYLK-----------ANV------LHEFKG 369
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 879 rgdmsmGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGvqAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:TIGR01414 370 ------GTGVRVNGVTIRNDFSGTRAEYGVGVNAKIKDNLSLY--ADVDYQKGGKKYTDNQGNLGVRYSF 431
|
|
| PRK09945 |
PRK09945 |
hypothetical protein; Provisional |
250-449 |
3.98e-18 |
|
hypothetical protein; Provisional
Pssm-ID: 137602 [Multi-domain] Cd Length: 418 Bit Score: 87.85 E-value: 3.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 250 TTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLG 329
Cdd:PRK09945 26 TQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 330 NFTVENGNADGVVLESGGRLDVLEGHSAWK-----------------TRVDDGGTLAVSAGGKATDVTMTSGSALIAdSG 392
Cdd:PRK09945 106 EFSVDQGYACGLLLENGGNLRVLEGHRAEKiildqeggllvngttsaVVVDEGGELLVYPGGEASNCEINQGGVFML-AG 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 647242702 393 ATVEGTNASGkfSIDGTSGQASGLLLENGGSFTVNAGGLASNTTvGHRGTLTLAAGG 449
Cdd:PRK09945 185 KASDTLLAGG--TMNNLGGEDSDTIVENGSIYRLGTDGLQLYSS-GKTQNLSVNVGG 238
|
|
| Autotransporter |
pfam03797 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
655-925 |
2.30e-14 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain] Cd Length: 255 Bit Score: 73.96 E-value: 2.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 655 LSIQGGHLGHDNNGGIARGatpeSSGSYGFVrLEGDLLRTEvagmSLTTGVHGAAGHSSVDVKDDDGSragtVRDDAGSL 734
Cdd:pfam03797 3 ARGFGGRGKQDGDGGAAGY----DADTGGLQ-VGADYRLGD----NLRLGVAFGYSRSDADVDGRGGS----GDSDSYSL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 735 GGYLNlTHTSSGLWADIVAQGTRHSMK--------ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLHYTWQGLS 806
Cdd:pfam03797 70 GLYGT-YYGDGGWYLDGGLGYGWHDNDtrrsvdlgGFSETAKGDYDGNGFGASLEAGYRFALGGGWTLEPFAGLAYVRLR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 807 LDDGQDNAGY----VKFGHGSAQHVRAGFRLGSHNDMSFGegtssrdtlrdsakhrvrelPVNWWVQPSVIRTFSSRGDM 882
Cdd:pfam03797 149 LDGFTESGGAaalsVDSQSYDSLTGRLGLRLSYTFDLGGG--------------------TLTPYARLGWRHEFGDDDPV 208
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 647242702 883 SM----GTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAG 925
Cdd:pfam03797 209 TTaafaGLSGAGSFTVAGADLARDSLELGAGLSAQLSDNLSLYANYD 255
|
|
| Autotransporter |
smart00869 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
655-934 |
1.46e-11 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain] Cd Length: 268 Bit Score: 66.05 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 655 LSIQGGHLGHDNNGGiarGATPESSGSYGFVRLEGDLLRTEvaGMSLTTGVHGAAGHSSVDVKDDDGSraGTVRDDAGSL 734
Cdd:smart00869 1 GRGLGGFLRQDSSGS---GGSAGFDYDSYGLQLGADYRLSD--NGNLSLGFAAGYGNSKVDFSGNKGS--GKGDVDSYGL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 735 GGYLNLTHtSSGLWADIVAQGTRHSMKASSDNNDF-------RARGWGWLGSLETGLPFSITDNLMLEPQLHYTWQGLSL 807
Cdd:smart00869 74 GLYAGYSL-GNGLYLDAQLGYGRSDNDTKRKVTLGgagrakgSYDGTGYGASLEAGYRFYLGGGLTLTPFAGLAYSRVRQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 808 DDGQDNAGYVKFGHGSAQH-----VRAGFRLGSHNDMSFGEGtssrdtlrdsakhrvrelpVNWWVQPSVIRTFSSRGDM 882
Cdd:smart00869 153 DGFTESGGGAFGLSVDSQSldslsLPLGLRLEYRLALGDGAT-------------------LTPYLRLAYVHDFYDDNPV 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 647242702 883 SMGTAAA--GSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSS 934
Cdd:smart00869 214 VTASLLGsgASFTTSGTDLDRNAAELGLGLSAKLSNGLSLSLNYDGEFGGSSRS 267
|
|
| auto_BafA_Cterm |
NF040482 |
BafA family autotransporter C-terminal domain; BafA from both Bartonella henselae and ... |
52-189 |
3.30e-05 |
|
BafA family autotransporter C-terminal domain; BafA from both Bartonella henselae and Bartonella quintana, and possibly all Bartonella BafA, are mitogenic autotransporter virulence factors that help induce vasoproliferative lesions during infection. This HMM represents the more conserved C-terminal portion only, as the passenger region is more highly variable in length and sequence.
Pssm-ID: 468508 [Multi-domain] Cd Length: 617 Bit Score: 47.71 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 52 AADTVVQAGETVSGgtltnhdNQIVFGtaNGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSvsd 131
Cdd:NF040482 9 AYDTVIYGQGETLG-------QQNVYD--GGIAWNTKVMQGGVQNVAKKSQSAKNGGFAFNTEVFGGGKQRVLAGGK--- 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 132 tvisagggqslqgqAVNTTLNGGE-QWVHEGGIATGTVINEKGWQAVKSGA-MATDTVVN 189
Cdd:NF040482 77 --------------AIGVTLNETAvQEIYAGGFVKNLTINDEAKSWVYAGAtLEGKTLVN 122
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| auto_Ag43 |
NF033177 |
Ag43/Cah family autotransporter adhesin; Members of this family, restricted to Escherichia ... |
1-948 |
0e+00 |
|
Ag43/Cah family autotransporter adhesin; Members of this family, restricted to Escherichia coli (including E. coli K-12) are the autotransporter adhesin Ag43 (antigen 43), also known as flu, or its calcium-binding homolog Cah, differing mostly in the central region. The C-terminal region forms an outer membrane beta-barrel autotransporter domain, which enables type V secretion (autotransport).
Pssm-ID: 467980 [Multi-domain] Cd Length: 948 Bit Score: 1575.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 1 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTA 80
Cdd:NF033177 1 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTSVPALAADTVVQAGETVNGGTLTNHDNQIVFGTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 81 NGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHE 160
Cdd:NF033177 81 NGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGTASDTVIRDGGGQSLNGLAVNTTLNGGEQWVHE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 161 GGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGD 240
Cdd:NF033177 161 GGIATGTVINEKGWQAVKSGALATDTVVNTGAEGGPDAENGDTGQTVYGTAERTTINKNGRQIVAASGTANTTVVYAGGD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 241 QTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA 320
Cdd:NF033177 241 QTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQVVKEGGLAGNTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 321 TVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNA 400
Cdd:NF033177 321 TVTGTNRLGNFSVENGKADNVVLENGGRLDVLEGHSAQNTLVDDGGTLAVSAGGKATTVTMTSGGALIADSGATVEGTNA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 401 SGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE 480
Cdd:NF033177 401 SGKFSIDGISGQASGLLLENGGSFTVNAGGQASNTTVGYRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 481 IRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLG 560
Cdd:NF033177 481 IRFDNQTTPDAALSRAVAKSNSPVTFHKLTTSNLTGQGGTINMRVTLDGSNVSDQLVINGGQATGKTWLAFTNVGNSNLG 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 561 VATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSR 640
Cdd:NF033177 561 VATTGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 641 SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDD 720
Cdd:NF033177 641 SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 721 GSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLHY 800
Cdd:NF033177 721 GSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQY 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 801 TWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRG 880
Cdd:NF033177 801 TWQGLSLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVSELPVNWWVQPSVIRTFSSRG 880
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 647242702 881 DMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:NF033177 881 DMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNMTF 948
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
98-832 |
1.58e-40 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 162.52 E-value: 1.58e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 98 NTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQ--GQAVNTTLNGGEQWVHEGGIATGTVINEKGWQ 175
Cdd:NF033176 402 NSGRENVSNGGSAYNTIINAGGNQYIYSNGEASGTTVNTSGFQRVNsgGTATGTKLSGGNQNVSSGGKAIAAEVYSGGKQ 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 176 AVKSGAMATDTVVNTGA---------EGGPDAENGDTGQFVrGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTV--H 244
Cdd:NF033176 482 TVYAGGEASGTQIFDGGvvnvsggsvSGASVNLNGRLNVFA-GNVTGTILNQEGRQYIYSGASATSTVANNEGREYVlsG 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 245 GHALDTTLN-GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVT 323
Cdd:NF033176 561 GVADGTVLNsGGLQAVSSGGSASATVINEGGSQFVYEGGNVTGTVIKNGGAIRVDSGASALNIALSSGGNLFTSTGATVT 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 324 GSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEG------ 397
Cdd:NF033176 641 GTNHYGSFSVSQNHASNVVLENGGLLAVTSGSTATDTTVNSAGRLRIDEGGALDGTTTINADGIVAGAKIKNDGdfilnl 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 398 -----------------TNASGKFSIDGTSGQASGLLLENGGsFTVNAGGLASNTTVGHRGTLTLAAGGSLSGrtQLSKG 460
Cdd:NF033176 721 agdydfntelsgngalvKDNSGVMSYEGTLTQARGVNVKNGG-IILGSAVVNADMAVSQNAYINISDQATING--SVNNK 797
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 461 ASMVLNGDVVStGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPV-------TFHKLTTSNLTGQ-GGTINMRVRLDGSNT 532
Cdd:NF033176 798 GSVVINNSIIN-GNITNDADLSFGTAKLLSATVNGSLVNNKNIIlnptkesAGNTLTVSNYTGTpGSVISLGGVLEGDNS 876
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 533 SDQLVINGGQATGKTWLAFTNVGNSnlgvatSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDS-----DEDW 607
Cdd:NF033176 877 LTDRLVVKGNTSGQSDIVYVNEGGS------GGQTIEGINIISVEGNSDAEFSLKNRVVAGAYDYTLQKGNvsgtdKKGW 950
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 608 YLRSE------NAYRAEVPLYTSMLTQAMDYDRILAGSRSHQTGVNG----ENNSVRLSIQGGHlghdNNGGIARGATPE 677
Cdd:NF033176 951 YLTSHlptsdtRQYRPENGSYATNMALANSLFLMDLNERKQFSAVNDntqpESASVWMKITGGR----TSGKLSDGQNKT 1026
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 678 SSGSYgFVRLEGDLLRTEVAGMSLTT----GVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVA 753
Cdd:NF033176 1027 TTNQF-INQLGGDIYKYHAEKLGDFTlgimGGYANAKGKTINHTSKKGARNTLDGYSAGLYGTWYQNGANATGLFAETWM 1105
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 754 QGTRHSMKASSDN--------NDFRAR-GWGWLGSLETGL-PFSITDNLMLEPQLHYTWQGLSLDDGQDNAGYVKFGHGS 823
Cdd:NF033176 1106 QYNWFNASVKGDGleeekynlNGLTASvGGGYNLNVHTWTsPEGIKGEFWLQPHLQAVWMGVTPDTHQEDNGTVVQGTGK 1185
|
810
....*....|
gi 647242702 824 AQ-HVRAGFR 832
Cdd:NF033176 1186 NNlQTKAGIR 1195
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
105-948 |
9.90e-40 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 158.96 E-value: 9.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 105 QNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMAT 184
Cdd:COG3468 7 GGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 185 DTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGT 264
Cdd:COG3468 87 NSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 265 ASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLE 344
Cdd:COG3468 167 GSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 345 SGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSG------SALIADSGATVEGTNASGKFSIDGTSGQASGLLL 418
Cdd:COG3468 247 GTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGggggasGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGS 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 419 ENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALS---- 494
Cdd:COG3468 327 GGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNnggg 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 495 --RAVAKGDSPVTFHKLTTS-NLTGQGGTINMRVRL-DGSNTSDQLVINGGqATGKTWLAFTNVGNSnlgVATSGQGIRV 570
Cdd:COG3468 407 gvGGGGGGGLTLTGGTLTVNgNYTGNNGTLVLNTVLgDDNSPTDRLVVNGN-TSGTTGVRVNNAGGL---GAQTVNGIEV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 571 VDAqNGATTeeGAFALSRPLQAGAFNYTLNR----DSDEDWYLRSE--------NAYRAEVPLYTSMLTQAMDYDRIL-- 636
Cdd:COG3468 483 VEV-NGASD--GAFTLGGRVVAGAYEYTLYQggsgGDDGNWYLRSTltppdpptPVYRPEVPSYLANPAAANGLFELGtl 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 637 ---AGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGiargaTPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSS 713
Cdd:COG3468 560 hdrLGERRYTDTGESDNSGAWLRVEGGHNRSRDSSG-----QLDYDSNRYGLQLGGDLLQWEDGGGRLHVGVMAGYGNGD 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 714 VDVKDDDgSRAGTVRDDAGSLGGYLNLTHtSSGLWADIVAQGTRHSMKASSDNNDFRA---RGWGWLGSLETGLPFSITD 790
Cdd:COG3468 635 SDVRSRA-TGTGKGDVDGYSLGLYGTWYG-NNGFYVDGVLQYSWFDNDVSSDDLGGVTgsyDGNGYSASLEAGYPFKLGE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 791 NLMLEPQLHYTWQGLSLDDGQDNAG-YVKFGHGSAQHVRAGFRLGshndmsfGEGTSSRDTLrdsakhrvrelpVNWWVQ 869
Cdd:COG3468 713 GWSLEPQAQLIYQGVDFDDFTDSNGtRVSGDDGDSLQGRLGLRLG-------YEFHWDDGRA------------LQPYLE 773
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647242702 870 PSVIRTFSSRGDMSMgtaaagSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:COG3468 774 ANWLHEFLGDNSVTV------NGVSFSQDGSGTWGELGLGVTGQLNKNLSLYGDVGYQTGLDGYDSSDTSGNLGVRYSF 846
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
5-480 |
2.08e-39 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 159.05 E-value: 2.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 5 LNTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVvqAGETVSGGTLTNHDNQIVF--GTANG 82
Cdd:NF033176 1 MNKAYSIVWNHSRQAWVVASELARGHGFVLAKNTLLVLAVASTIGNAFAQNI--SSGVVSGGVVSSGETQVVYsnGQTSN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 83 MTISTGLEYGPDNEANT--------GGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISaGGGQSLQ--GQAVNTTL- 151
Cdd:NF033176 79 ATVNSGGIQNVNNGGKTtsttvnssGAQNVGNSGTAISTIVNSGGVQRVSSGGVTSATSLS-GGAQNIYnlGHASNTVIf 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 152 NGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTgaeggpdaeNGDTGQFVRGNAVRTTINENGRQIVAAEGTAN 231
Cdd:NF033176 158 NGGNQTIFSGGISDDTNISSGGQQRVSSGGVASNTTINS---------SGTQNILSGGSTVSTHISSGGNQYISAGGNAS 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 232 TTVVYAGGDQTVH--GHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLK 309
Cdd:NF033176 229 ATVVSSGGFQRVSsgGTATGTVLSGGTQNVSSGGSAISTSVYSSGVQTVYAGATVTDTTVNSGGKQNISSGGIVSGTIVN 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 310 QGGALVTSTAATVTGSNRLGNFTVEN-GNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALI 388
Cdd:NF033176 309 SSGTQNIYSGGSALSANIKGSQIVNSdGTAINTLVNDGGYQHIRNGGVASGTIINQSGRVNISSGGYAESTIINSGGTQS 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 389 ADSGATVEGT--NASGKFSIDgTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGrTQLSKGASMVLN 466
Cdd:NF033176 389 VLSGGYASGTliNNSGRENVS-NGGSAYNTIINAGGNQYIYSNGEASGTTVNTSGFQRVNSGGTATG-TKLSGGNQNVSS 466
|
490
....*....|....
gi 647242702 467 GDVVSTGDIVNAGE 480
Cdd:NF033176 467 GGKAIAAEVYSGGK 480
|
|
| PL2_Passenger_AT |
cd01344 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ... |
422-616 |
1.94e-29 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain] Cd Length: 188 Bit Score: 115.86 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 422 GSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNgdvvSTGDIVNAGEIRFDNQTTPDAalSRAVAKGD 501
Cdd:cd01344 1 GTITGNGGWKLGGDLTLGGGALTLTTSLTLTGTLLTGGAGTLTLD----STSTWNITGTSTLNVGNLTNA--GTIDLGNG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 502 SPVTFHKLTTSNLTGQGGTINMRVRLDGSN-TSDQLVINGGqATGKTWLAFTNVGNSNlgvATSGQGIRVVDAQNgaTTE 580
Cdd:cd01344 75 SPAGGTLTITGNYTGNGGTLRLNTVLGDDDsPTDRLVIDGD-ASGTTRVAVNNAGGSG---ATTGNGIEVVEVGG--TSS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 647242702 581 EGAFALSRPLQAGAFNYTLNRDS----DEDWYLRSENAYR 616
Cdd:cd01344 149 NGAFSLAGRVVAGAYEYRLYRGGvsgnDGNWYLRSELAPP 188
|
|
| autotrans_barl |
TIGR01414 |
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ... |
505-948 |
8.61e-24 |
|
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain] Cd Length: 431 Bit Score: 105.54 E-value: 8.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 505 TFHKLTTSNLTGQGGTINMRVRLDGSN-TSDQLVINGgQATGKTWLAFTNVGNSNlgvATSGQGIRVVDAQNGAtteEGA 583
Cdd:TIGR01414 4 AFNTLTVNGLYTGNGGFVMNTDLGGDNsQTDRLVVNG-NASGTTGVVVNNIGGEG---AQTGDGITLVTVNGGS---DAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 584 FALSRP-LQAGAFNYTLNRD---SDEDWYLRS------------ENAYRAEVPLYTSMLTQAMDY---DRILAGSRSHQT 644
Cdd:TIGR01414 77 FTLANGkVDAGAYTYTLYKNgteDNNNWYLTSslpdltppgqqlSPTYRAEAGSYAANANAALFLaelDTLRQRMGDLRS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 645 GVNGENNSVRLSIQGGHLGHDNNGGIARgatpeSSGSYGFVRLEGDLLRTEVAGMSLTTGVhgAAGHSSVDVKDDDGSRA 724
Cdd:TIGR01414 157 AARDAGNGVWARIFGGDNHLDGDAGAAG-----YDQNTTGVQLGGDILLAGNADGDLHVGL--MAGYAKADIKTRSYKYG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 725 GTVRDDAGSLGGYLnLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARG----WGWLGSLETGLPFSITDN-LMLEPQLH 799
Cdd:TIGR01414 230 GKGKVDGYGLGLYG-TWLQDSGAYVDGVLQYSRFRNDVSSTGSNGKVSGkynsNGFTASLEAGYRYNLGGNgWYVEPQAQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 800 YTWQGLSLDDGQDNAG-YVKFGHGSAQHVRAGFRLGSHNDMsfGEGTSSRDTLRdsakhrvrelpVNWwvqpsvIRTFSS 878
Cdd:TIGR01414 309 LSYFGVSGDDYKESNGtRVLGGGGDSLQGRLGLRVGYQFDL--GTGRAVKPYLK-----------ANV------LHEFKG 369
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 879 rgdmsmGTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGvqAGYAHSVSGSSAEGYNGQATLNVTF 948
Cdd:TIGR01414 370 ------GTGVRVNGVTIRNDFSGTRAEYGVGVNAKIKDNLSLY--ADVDYQKGGKKYTDNQGNLGVRYSF 431
|
|
| PL_Passenger_AT |
cd00253 |
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V ... |
431-616 |
3.01e-18 |
|
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Pssm-ID: 238156 [Multi-domain] Cd Length: 186 Bit Score: 83.57 E-value: 3.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 431 LASNTTVGHRGTLTLAAGGSLSGRTQLSKGA-SMVLNGDVVSTGDIVNAGEIrfdnqttpDAALSRAVAKGDSPVTFHKL 509
Cdd:cd00253 11 GGGDLTLGGGGALTLTGNSVWLGTLQAGGGTvSLNSNSLWTLTGDSTVNGNL--------TNSGGTVDFGSASGAFNTLT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 510 TTSNLTGQGGTINMRVRLDG-SNTSDQLVINGgQATGKTWLAFTNVGNSNlgvATSGQGIRVVDAQNGattEEGAFALSR 588
Cdd:cd00253 83 VNGNYLGGNGTFVLNTDLGGdNSPTDKLVVTG-NASGTTNVAVVNAGGEG---ASTGDGIELVEVNGG---SDAAFSLAG 155
|
170 180 190
....*....|....*....|....*....|.
gi 647242702 589 PLQAGAFNYTLNRDS---DEDWYLRSENAYR 616
Cdd:cd00253 156 RVDAGAYEYTLYKGGvgnNGNWYLRSTLAPP 186
|
|
| PRK09945 |
PRK09945 |
hypothetical protein; Provisional |
250-449 |
3.98e-18 |
|
hypothetical protein; Provisional
Pssm-ID: 137602 [Multi-domain] Cd Length: 418 Bit Score: 87.85 E-value: 3.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 250 TTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLG 329
Cdd:PRK09945 26 TQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 330 NFTVENGNADGVVLESGGRLDVLEGHSAWK-----------------TRVDDGGTLAVSAGGKATDVTMTSGSALIAdSG 392
Cdd:PRK09945 106 EFSVDQGYACGLLLENGGNLRVLEGHRAEKiildqeggllvngttsaVVVDEGGELLVYPGGEASNCEINQGGVFML-AG 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 647242702 393 ATVEGTNASGkfSIDGTSGQASGLLLENGGSFTVNAGGLASNTTvGHRGTLTLAAGG 449
Cdd:PRK09945 185 KASDTLLAGG--TMNNLGGEDSDTIVENGSIYRLGTDGLQLYSS-GKTQNLSVNVGG 238
|
|
| Autotransporter |
pfam03797 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
655-925 |
2.30e-14 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain] Cd Length: 255 Bit Score: 73.96 E-value: 2.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 655 LSIQGGHLGHDNNGGIARGatpeSSGSYGFVrLEGDLLRTEvagmSLTTGVHGAAGHSSVDVKDDDGSragtVRDDAGSL 734
Cdd:pfam03797 3 ARGFGGRGKQDGDGGAAGY----DADTGGLQ-VGADYRLGD----NLRLGVAFGYSRSDADVDGRGGS----GDSDSYSL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 735 GGYLNlTHTSSGLWADIVAQGTRHSMK--------ASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLHYTWQGLS 806
Cdd:pfam03797 70 GLYGT-YYGDGGWYLDGGLGYGWHDNDtrrsvdlgGFSETAKGDYDGNGFGASLEAGYRFALGGGWTLEPFAGLAYVRLR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 807 LDDGQDNAGY----VKFGHGSAQHVRAGFRLGSHNDMSFGegtssrdtlrdsakhrvrelPVNWWVQPSVIRTFSSRGDM 882
Cdd:pfam03797 149 LDGFTESGGAaalsVDSQSYDSLTGRLGLRLSYTFDLGGG--------------------TLTPYARLGWRHEFGDDDPV 208
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 647242702 883 SM----GTAAAGSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAG 925
Cdd:pfam03797 209 TTaafaGLSGAGSFTVAGADLARDSLELGAGLSAQLSDNLSLYANYD 255
|
|
| AC_1 |
pfam18883 |
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) ... |
501-599 |
5.50e-14 |
|
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) in the Type Va Secretion System (T5aSS). Autotransporters (ATs) belong to a family of modular proteins secreted by the Type V, subtype a, secretion system (T5aSS) and considered as an important source of virulence factors in lipopolysaccharidic diderm bacteria (archetypical Gram-negative bacteria). The AC of type 1 with beta-fold appears as a prevalent and conserved structural element exclusively associated to beta-helical AT passenger.
Pssm-ID: 465898 [Multi-domain] Cd Length: 114 Bit Score: 69.18 E-value: 5.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 501 DSPVTFHKLTTSN-LTGQGGTINMRVRLDGSNT-SDQLVINGGQATGKTWLAFTNVGNSnlGVATSGQGIRVVDAqnGAT 578
Cdd:pfam18883 18 PSGASYKTLTVDGdYTGNDGTLALNTYLGGDGSpSDKLVIDGGTASGTTNLRINNTGGP--GALTTNDGILVVDV--GGT 93
|
90 100
....*....|....*....|.
gi 647242702 579 TEEGAFALSRPLQAGAFNYTL 599
Cdd:pfam18883 94 TSDGAFRLAGRAVAGPYEYLL 114
|
|
| Autotransporter |
smart00869 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
655-934 |
1.46e-11 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain] Cd Length: 268 Bit Score: 66.05 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 655 LSIQGGHLGHDNNGGiarGATPESSGSYGFVRLEGDLLRTEvaGMSLTTGVHGAAGHSSVDVKDDDGSraGTVRDDAGSL 734
Cdd:smart00869 1 GRGLGGFLRQDSSGS---GGSAGFDYDSYGLQLGADYRLSD--NGNLSLGFAAGYGNSKVDFSGNKGS--GKGDVDSYGL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 735 GGYLNLTHtSSGLWADIVAQGTRHSMKASSDNNDF-------RARGWGWLGSLETGLPFSITDNLMLEPQLHYTWQGLSL 807
Cdd:smart00869 74 GLYAGYSL-GNGLYLDAQLGYGRSDNDTKRKVTLGgagrakgSYDGTGYGASLEAGYRFYLGGGLTLTPFAGLAYSRVRQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 808 DDGQDNAGYVKFGHGSAQH-----VRAGFRLGSHNDMSFGEGtssrdtlrdsakhrvrelpVNWWVQPSVIRTFSSRGDM 882
Cdd:smart00869 153 DGFTESGGGAFGLSVDSQSldslsLPLGLRLEYRLALGDGAT-------------------LTPYLRLAYVHDFYDDNPV 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 647242702 883 SMGTAAA--GSNMTFSPSRNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSS 934
Cdd:smart00869 214 VTASLLGsgASFTTSGTDLDRNAAELGLGLSAKLSNGLSLSLNYDGEFGGSSRS 267
|
|
| AIDA |
pfam16168 |
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ... |
329-384 |
1.10e-10 |
|
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.
Pssm-ID: 406554 [Multi-domain] Cd Length: 57 Bit Score: 57.73 E-value: 1.10e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 647242702 329 GNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSG 384
Cdd:pfam16168 1 GAFSISGGVADNVLLENGGSLTVVAGTSATDTTVDKGGTLDVQSGGTATGTVVNNG 56
|
|
| ESPR |
pfam13018 |
Extended Signal Peptide of Type V secretion system; This conserved domain is called ESPR for ... |
6-53 |
1.35e-10 |
|
Extended Signal Peptide of Type V secretion system; This conserved domain is called ESPR for Extended Signal Peptide Region. It is present at the N-terminus of the signal peptides of proteins belonging to the Type V secretion systems, including the autotransporters (T5aSS), TpsA exoproteins of the two-partner system (T5bSS) and trimeric autotransporters (TAAs). So far, the ESPR is present only in Gram-negative bacterial proteins originating from the classes Beta- and Gamma-proteobacteria. ESPR severely impairs inner membrane translocation, suggesting that it adopts a particular conformation or it interacts with a cytoplasmic or inner membrane co-factor, prior to exportation. Deletion of ESPR causes mis-folding of the TAAs passenger domain in the periplasm, substantially impairing its translocation across the outer membrane.
Pssm-ID: 463773 [Multi-domain] Cd Length: 50 Bit Score: 57.16 E-value: 1.35e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 647242702 6 NTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAA 53
Cdd:pfam13018 2 NKIYRVIWNRARGAWVVVSELAKSKGKSSSSSSGSAAALAALLLLLLA 49
|
|
| PL1_Passenger_AT |
cd01343 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ... |
362-609 |
1.80e-08 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain] Cd Length: 233 Bit Score: 56.21 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 362 VDDGGTLAVSAGGKAT-DVTMTSGSALIADSGATVEGTNAsgKFSIDGTSGQASGLLLeNGgsfTVNAGGlasNTTVGHR 440
Cdd:cd01343 4 VSDGGNITAGDNAQLTlGGGALYGSSVTLTNGAVLDAGNA--NLSAAASYATLSGSNI-RG---TVVLGA---GQPLQAL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 441 GTLTLAAGGSLSGRTQLSKG-ASMVLNGDVVSTGD------IVNAGEIRFDNQTTPdaalsravakgdspvTFHKLTTSN 513
Cdd:cd01343 75 AELLLGGNAAWTGAIQGLNAtVSLNLNSVWTLTGDsnvnnlTLNGGTVDFNGPSAG---------------KFNTLTVNT 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 514 LTGQGgTINMRVRLDGsNTSDQLVINGgQATGKtwlaFTNVGNSNLGVATSGQGIRVVDAQNGatTEEGAFALSRPLQAG 593
Cdd:cd01343 140 LSGNG-TFVMRTDLAG-GQGDKLVVTG-SATGD----FNLLVVNTGKEPTSGLNLTLVSTPKG--GDAEFTLANGTVDLG 210
|
250
....*....|....*.
gi 647242702 594 AFNYTLNRDSDEDWYL 609
Cdd:cd01343 211 AYRYTLVKDGNGNWTL 226
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
34-736 |
1.58e-07 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 55.54 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 34 TGVAVALSLAAVTSVPVLAADTVVQAGetvSGGTLTNHDNQIVFGTANGMTISTGleyGPDNEANTGGQWIQNGGIANNT 113
Cdd:COG3210 790 AGAEISIDITADGTITAAGTTAINVTG---SGGTITINTATTGLTGTGDTTSGAG---GSNTTDTTTGTTSDGASGGGTA 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 114 TVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAE 193
Cdd:COG3210 864 GANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTT 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 194 GGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSD 273
Cdd:COG3210 944 ALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVT 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 274 GWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLe 353
Cdd:COG3210 1024 GTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGA- 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 354 ghsawktrVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLAS 433
Cdd:COG3210 1103 --------TGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATT 1174
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 434 NTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSN 513
Cdd:COG3210 1175 TTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTG 1254
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 514 LTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAG 593
Cdd:COG3210 1255 DATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSG 1334
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 594 AFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARG 673
Cdd:COG3210 1335 GVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNN 1414
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 647242702 674 ATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGG 736
Cdd:COG3210 1415 GGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAV 1477
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
14-544 |
7.58e-07 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 53.23 E-value: 7.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 14 NHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGP 93
Cdd:COG3210 186 VVAANPTGVTGVGGALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGT 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 94 DNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVheGGIATGTVINEKG 173
Cdd:COG3210 266 GNAGNTTIGTTVTGTNATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNG--DGNNTTANSGAGL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 174 WQAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLN 253
Cdd:COG3210 344 VSGGTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 254 GGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTV 333
Cdd:COG3210 424 GGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNA 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 334 ENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSGQA 413
Cdd:COG3210 504 GGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 414 SGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAAL 493
Cdd:COG3210 584 NSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTG 663
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 647242702 494 SRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQAT 544
Cdd:COG3210 664 VNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSIT 714
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
34-756 |
1.35e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 52.46 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 34 TGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNT 113
Cdd:COG3210 338 NSGAGLVSGGTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGN 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 114 TVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAE 193
Cdd:COG3210 418 GGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNA 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 194 GGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSD 273
Cdd:COG3210 498 TISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTS 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 274 GWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLE 353
Cdd:COG3210 578 NATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASAN 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 354 GHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLAS 433
Cdd:COG3210 658 GSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDTVTFGNLGT 737
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 434 NTTVGHRGTLTLAAGGslSGRTQLSKGASMVLNGDVVSTGDivNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSN 513
Cdd:COG3210 738 GATLTLNAGVTITSGN--AGTLSIGLTANTTASGTTLTLAN--ANGNTSAGATLDNAGAEISIDITADGTITAAGTTAIN 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 514 LTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAG 593
Cdd:COG3210 814 VTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANA 893
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 594 AFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARG 673
Cdd:COG3210 894 GTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAG 973
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 674 ATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVA 753
Cdd:COG3210 974 SSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGI 1053
|
...
gi 647242702 754 QGT 756
Cdd:COG3210 1054 SGG 1056
|
|
| AIDA |
pfam16168 |
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ... |
402-460 |
2.09e-06 |
|
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.
Pssm-ID: 406554 [Multi-domain] Cd Length: 57 Bit Score: 45.79 E-value: 2.09e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 647242702 402 GKFSIDGtsGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKG 460
Cdd:pfam16168 1 GAFSISG--GVADNVLLENGGSLTVVAGTSATDTTVDKGGTLDVQSGGTATGTVVNNGG 57
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
62-756 |
3.72e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 51.31 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 62 TVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQS 141
Cdd:COG3210 716 TGQIGALANANGDTVTFGNLGTGATLTLNAGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAEIS 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 142 LQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGR 221
Cdd:COG3210 796 IDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAA 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 222 QIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHN---GGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVN 298
Cdd:COG3210 876 SITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATvtaTGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLS 955
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 299 AGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATD 378
Cdd:COG3210 956 AASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTG 1035
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 379 VTMTSGSALIADSGATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLS 458
Cdd:COG3210 1036 TAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGG 1115
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 459 KGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVI 538
Cdd:COG3210 1116 VTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAG 1195
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 539 NGGQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAE 618
Cdd:COG3210 1196 TDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAG 1275
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 619 VPLYTSMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAG 698
Cdd:COG3210 1276 NAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGG 1355
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 647242702 699 MSLTTGVHGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGT 756
Cdd:COG3210 1356 NGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGN 1413
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
17-488 |
5.59e-06 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 50.55 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 17 TGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNE 96
Cdd:COG4625 70 GGGGAGGGGGGGGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 97 ANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQA 176
Cdd:COG4625 150 GGGGGGGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGG 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 177 VKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGY 256
Cdd:COG4625 230 GGGGGGGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGG 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 257 QYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENG 336
Cdd:COG4625 310 GGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSG 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 337 NADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSGQASGL 416
Cdd:COG4625 390 GGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGS 469
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 647242702 417 LLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTT 488
Cdd:COG4625 470 GSGAGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
6-756 |
7.90e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 50.15 E-value: 7.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 6 NTSYRLVWNHITGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTI 85
Cdd:COG3210 591 GTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGT 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 86 STGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGG----SVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEG 161
Cdd:COG3210 671 GGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSitvtGQIGALANANGDTVTFGNLGTGATLTLNAGVTIT 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 162 GIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAENGDTGqFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQ 241
Cdd:COG3210 751 SGNAGTLSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAE-ISIDITADGTITAAGTTAINVTGSGGTITINTATTG 829
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 242 TVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAAT 321
Cdd:COG3210 830 LTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGN 909
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 322 VTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNAS 401
Cdd:COG3210 910 GAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGG 989
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 402 GKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEI 481
Cdd:COG3210 990 VIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGT 1069
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 482 RFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGV 561
Cdd:COG3210 1070 TGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLV 1149
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 562 ATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTSMLTQAMDYDRILAGSRS 641
Cdd:COG3210 1150 AVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGN 1229
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 642 HQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVHGAAGHSSVDVKDDDG 721
Cdd:COG3210 1230 TTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGA 1309
|
730 740 750
....*....|....*....|....*....|....*
gi 647242702 722 SRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGT 756
Cdd:COG3210 1310 NGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTIN 1344
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
41-531 |
1.27e-05 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 49.39 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 41 SLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL 120
Cdd:COG4625 5 GGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 121 QRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAEN 200
Cdd:COG4625 85 GGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 201 GDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKE 280
Cdd:COG4625 165 GGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 281 GGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKT 360
Cdd:COG4625 245 GGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 361 RVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHR 440
Cdd:COG4625 325 GGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGG 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 441 GTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGT 520
Cdd:COG4625 405 AGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTY 484
|
490
....*....|.
gi 647242702 521 INMRVRLDGSN 531
Cdd:COG4625 485 TGTTTVNGGGN 495
|
|
| PRK09945 |
PRK09945 |
hypothetical protein; Provisional |
104-423 |
1.39e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 137602 [Multi-domain] Cd Length: 418 Bit Score: 48.56 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 104 IQNGGIANNTTVTGGGLQRVNAGG-------------SVSDTVI------SAGGGQSLQGQAVNTTLNGGEQWVHEGGIA 164
Cdd:PRK09945 35 VEAGGRAENTVVTGAGWLKVATGGiakctqygnngtlSVSDGAIatdivqSEGGAISLSTLATVNGRHPEGEFSVDQGYA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 165 TGTVINEKGWQAVKSGAMATDTVVNTgaeggpdaengDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVH 244
Cdd:PRK09945 115 CGLLLENGGNLRVLEGHRAEKIILDQ-----------EGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLA 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 245 GHALDTTLNGGYQYvHNGGTASDTVVN--------SDGWQIVKEGGLADFtTVNQKGKLQVNAgGTATNVTLKQGGALVT 316
Cdd:PRK09945 184 GKASDTLLAGGTMN-NLGGEDSDTIVEngsiyrlgTDGLQLYSSGKTQNL-SVNVGGRAEVHA-GTLENAVIQGGTVILL 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 317 STAATVTgsnrlgNFTVENgnaDGVVLESGGRLDVLEGHSAwktrvddggTLAVSAGGKATDVTMTSGSALIADsGATVE 396
Cdd:PRK09945 261 SPTSADE------NFVVEE---DRAPVELTGSVALLDGASM---------IIGYGADLQQSTITVQQGGVLILD-GSTVK 321
|
330 340
....*....|....*....|....*..
gi 647242702 397 GTNASgkFSIDGTSGQASGLLLENGGS 423
Cdd:PRK09945 322 GDSVT--FSVGNINLNGGKLWLITGAA 346
|
|
| auto_BafA_Cterm |
NF040482 |
BafA family autotransporter C-terminal domain; BafA from both Bartonella henselae and ... |
52-189 |
3.30e-05 |
|
BafA family autotransporter C-terminal domain; BafA from both Bartonella henselae and Bartonella quintana, and possibly all Bartonella BafA, are mitogenic autotransporter virulence factors that help induce vasoproliferative lesions during infection. This HMM represents the more conserved C-terminal portion only, as the passenger region is more highly variable in length and sequence.
Pssm-ID: 468508 [Multi-domain] Cd Length: 617 Bit Score: 47.71 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 52 AADTVVQAGETVSGgtltnhdNQIVFGtaNGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSvsd 131
Cdd:NF040482 9 AYDTVIYGQGETLG-------QQNVYD--GGIAWNTKVMQGGVQNVAKKSQSAKNGGFAFNTEVFGGGKQRVLAGGK--- 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 132 tvisagggqslqgqAVNTTLNGGE-QWVHEGGIATGTVINEKGWQAVKSGA-MATDTVVN 189
Cdd:NF040482 77 --------------AIGVTLNETAvQEIYAGGFVKNLTINDEAKSWVYAGAtLEGKTLVN 122
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
78-580 |
3.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 47.85 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 78 GTANGMTISTGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQw 157
Cdd:COG4625 4 GGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGG- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 158 VHEGGIATGTVINEKGWQAVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYA 237
Cdd:COG4625 83 GGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 238 GGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTS 317
Cdd:COG4625 163 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 318 TAATVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSAGGKATDVTMTSGSALIADSGATVEG 397
Cdd:COG4625 243 GGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 398 TNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVN 477
Cdd:COG4625 323 GGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGG 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 478 AGEIRFDNQTTPDAALSRAVAKGDSPVTFHKLTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNS 557
Cdd:COG4625 403 GGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNN 482
|
490 500
....*....|....*....|...
gi 647242702 558 NLGVATSGQGIRVVDAQNGATTE 580
Cdd:COG4625 483 TYTGTTTVNGGGNYTQSAGSTLA 505
|
|
| PRK15313 |
PRK15313 |
intestinal colonization autotransporter adhesin MisL; |
164-611 |
9.25e-05 |
|
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain] Cd Length: 955 Bit Score: 46.33 E-value: 9.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 164 ATGTVINEKGWQAVKSgamaTDTVVNTGAEGGPDAENGD--TGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQ 241
Cdd:PRK15313 82 GNGLTLNGPGAEAFEH----TVTVIQNSGTGSPGVIFGNdlTIRTQSANAANNGRDVDGIRTHGANTPDNPVFIITGDRT 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 242 TVHGHALDTT-LNGGYQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQkgklqVNAGGTATNVTLKQGGALVTSTAA 320
Cdd:PRK15313 158 RIYVDGQDGDgINAGYNSLGQGWTGSANIYVGDDLYIKTTGSQGRGITANA-----MRDASRAKNTIVVGNRAHIVTTGD 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 321 TVTGSNRLGNFTVENGNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVSaGGKATDVTMTSGSALIADSgATVEGTNA 400
Cdd:PRK15313 233 SSEGLRTGQSGSLIRLGDDATIETSGASSTGIYAASSSRTELGNNATITVN-GASAHAVYATNATVNLGEN-ATISVNSA 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 401 SGKFSIdgtSGQASGLLLENGGSftVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE 480
Cdd:PRK15313 311 SKAASY---SKAPAGLYALSRGA--INLAGGAAITMAGDNSSESYAISTETGGIVDGSSGGRFVIDGDIRAAGATAASGT 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 481 IRFDNQT-----------------TPDAALSRAVAKGDSPVTFHKLTTSNLT----GQGGTIN-----------MRVRLD 528
Cdd:PRK15313 386 LPQQNSTiklnmtdnsrwdgasyiTSATAGTGVISVQMSDATWNMTSSSTLTdltlNSGATINfshedgepwqtLTINED 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 529 GSNTSDQLVING---------------GQATGKTWLAFTNVGNSNlgvATSGQGIRVVdaqNGATTEEGAFALSRPLQAG 593
Cdd:PRK15313 466 YVGNGGKLVFNTvlndddsetdrlqvlGNTSGNTFVAVNNIGGAG---AQTIEGIEIV---NVAGNSNGTFEKASRIVAG 539
|
490
....*....|....*...
gi 647242702 594 AFNYTLNRDSdEDWYLRS 611
Cdd:PRK15313 540 AYDYNVVQKG-KNWYLTS 556
|
|
| PRK09752 |
PRK09752 |
AIDA-I family autotransporter YfaL; |
224-612 |
2.02e-04 |
|
AIDA-I family autotransporter YfaL;
Pssm-ID: 182059 [Multi-domain] Cd Length: 1250 Bit Score: 45.43 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 224 VAAEGTANTTVVYAGGDQTVhghaldtTLNGGYQYVHNGGTASDTVVNSDGWQI--VKEGGLADFTTVNQKGKLQVNAG- 300
Cdd:PRK09752 542 IGGDGKDGVYVVIDAGDGQV-------SLANNNSYLGTTQIASGTLMVSDNSQLgdTHYNRQVIFTDKQQESVMEITADv 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 301 -------GTATNVTLKQGGALVTSTAATVTGSNRLGNFTVENGNADGVVLESGGRLDVL--EGHSAWKTRVDDGgtlavS 371
Cdd:PRK09752 615 dtrstttGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELtaSGTTQSAVRVEEG-----T 689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 372 AGGKATDVTMTSGSALIADSGATVEGTNASGKfSIDGTSGQ----ASGLLLENGGSFTVNAgglASNTTVGHRGTLTLAA 447
Cdd:PRK09752 690 LKGDVADIIPYASSLWVGDGATFVTGADQDIQ-SIDATSSGtidiSDGTVLRLTGQDTSVA---LNASLFNGDGTLVNAT 765
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 448 GG-SLSGRTQLS-KGASMVLNGDVVSTGDIVNageirfdnqTTPDAALSRAVAkGDSpvtfhkLTTSNLTGQGGTINMRV 525
Cdd:PRK09752 766 DGvTLTGELNTNlETDSLTYLSDVTVNGNLTN---------TSGAVSLQNGVA-GDT------LTVNGDYTGGGTLLLDS 829
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 526 RLDGSNT-SDQLVINGGQAtGKTWLAFTNVgnSNLGVATSgQGIRVVDAQNGAT----TEEGAFALSRPLQAGAFNYTLN 600
Cdd:PRK09752 830 ELNGDDSvSDQLVLNGNTA-GNTTVVVNSI--TGIGEPTS-TGIKVVDFAADPTqfqnNAQFSLAGSGYVNMGAYDYTLV 905
|
410
....*....|..
gi 647242702 601 RDSDeDWYLRSE 612
Cdd:PRK09752 906 EDNN-DWYLRSQ 916
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
17-460 |
1.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 42.46 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 17 TGTLVVASELARSRGKRTGVAVALSLAAVTSVPVLAADTVVQAGETVSGGTLTNHDNQIVFGTANGMTISTGLEYGPDNE 96
Cdd:COG4625 44 GGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 97 ANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWV-HEGGIATGTVINEKGWQ 175
Cdd:COG4625 124 GGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGgGGGGGGNGGGGGGGGGG 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 176 AVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINENGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGG 255
Cdd:COG4625 204 GGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGG 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 256 YQYVHNGGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAATVTGSNRLGNFTVEN 335
Cdd:COG4625 284 GGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGT 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 336 GNADGVVLESGGRLDVLEGHSAWKTRVDDGGTLAVS-----AGGKATDVTMTSGSALIADSGATVEGTNASGKFSIDGTS 410
Cdd:COG4625 364 GGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGgggggAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGG 443
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 647242702 411 GQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGSLSGRTQLSKG 460
Cdd:COG4625 444 GATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGG 493
|
|
| PRK15319 |
PRK15319 |
fibronectin-binding autotransporter adhesin ShdA; |
364-612 |
1.63e-03 |
|
fibronectin-binding autotransporter adhesin ShdA;
Pssm-ID: 185219 [Multi-domain] Cd Length: 2039 Bit Score: 42.38 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 364 DGGTLAVSAGGKatdVTMTSGSALIADSGATVEGTNASGKFSIdGTSGQASGLLLENGGSFTvNAGGLASNTTVGHRGTL 443
Cdd:PRK15319 1456 DGKSLTKLGAGK---LTLSGANTYTGDTNVQEGTLWLSGDGSI-GEMGSQQAVNVASGATFG-GSNGTTVNGKVTNEGTL 1530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 444 TLAaggslsgrTQLSKGASMVLNGDVVSTGDIVNAgeirfDNQTTPDAALsravakgdspvtfhkLTTSNLTGQGGTINM 523
Cdd:PRK15319 1531 VFG--------DSEETGAIFTLNGDLINMGTMTSG-----SSSSTPGNTL---------------YVDGNYTGNGGSLYL 1582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 524 RVRL-DGSNTSDQLVINgGQATGKTWLAFTNVGNSnlgvATSGQGIRVVDAqnGATTEEGAFALSRPLQAGAFNYTLN-R 601
Cdd:PRK15319 1583 NTVLgDDDSATDKLVIT-GDASGTTDLYINGIGDG----AQTTNGIEVVDV--GGVSTSDAFELKNEVNAGLYTYRLYwN 1655
|
250
....*....|.
gi 647242702 602 DSDEDWYLRSE 612
Cdd:PRK15319 1656 ESDNDWYLASK 1666
|
|
| AIDA |
pfam16168 |
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ... |
262-312 |
3.58e-03 |
|
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.
Pssm-ID: 406554 [Multi-domain] Cd Length: 57 Bit Score: 36.54 E-value: 3.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 647242702 262 GGTASDTVVNSDGWQIVKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGG 312
Cdd:pfam16168 7 GGVADNVLLENGGSLTVVAGTSATDTTVDKGGTLDVQSGGTATGTVVNNGG 57
|
|
| O_hepto_targRPT |
TIGR04415 |
autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of ... |
109-141 |
6.24e-03 |
|
autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of a strand-loop-strand repeat that occurs often in type V secretion system (T5SS). These repeats usually occur in the passenger domain of the classical monomeric autotransporter. Proteins with this repeat often are encoded next to a member of family TIGR04414, the Aah/TibC family O-heptosyltransferase, and may be glycosylated in regions with this repeat.
Pssm-ID: 275208 [Multi-domain] Cd Length: 38 Bit Score: 35.13 E-value: 6.24e-03
10 20 30
....*....|....*....|....*....|...
gi 647242702 109 IANNTTVTGGGLQRVNAGGSVSDTVISAGGGQS 141
Cdd:TIGR04415 1 SASGTTVNSGGTQTVSSGGTATGTTVNSGGTQT 33
|
|
| Pertactin |
pfam03212 |
Pertactin; |
505-609 |
8.28e-03 |
|
Pertactin;
Pssm-ID: 460848 [Multi-domain] Cd Length: 121 Bit Score: 37.37 E-value: 8.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647242702 505 TFHKLTTSNLTGQGgTINMRVRLDgSNTSDQLVINGgQATGKTWLAFTNVGnsnLGVATSGQGIRVVDAQNGATteegAF 584
Cdd:pfam03212 22 AFKTLTTQTLSGSG-TFVMNADVA-SGTGDQLVVSG-NASGQHVLLVRNTG---SEPASGNTKLTLVETGGGDA----AF 91
|
90 100
....*....|....*....|....*...
gi 647242702 585 ALSRP---LQAGAFNYTLNRDSDEDWYL 609
Cdd:pfam03212 92 TLGNKggkVDAGTYRYRLTADGNGNWSL 119
|
|
| |
