NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|647497725|ref|WP_025809200|]
View 

MULTISPECIES: DUF2388 domain-containing protein [Pseudomonas]

Protein Classification

DUF2388 domain-containing protein( domain architecture ID 10560025)

DUF2388 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2388 pfam09498
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 38-106 1.72e-23

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


:

Pssm-ID: 430648  Cd Length: 70  Bit Score: 85.41  E-value: 1.72e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647497725   38 LSTTEGSSKATSSFKDDKLVLAAKTDAAAFVASAGEIRGAQLEAAMRHIRQTLGTPGYSDLQLASAILT 106
Cdd:pfam09498   2 ASSGDTTSSTTSSFRDDKLVVAARDDAASFVASDGEIRGARLEAALQHLRSENPQLQASDLELAQAILA 70
 
Name Accession Description Interval E-value
DUF2388 pfam09498
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 38-106 1.72e-23

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 430648  Cd Length: 70  Bit Score: 85.41  E-value: 1.72e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647497725   38 LSTTEGSSKATSSFKDDKLVLAAKTDAAAFVASAGEIRGAQLEAAMRHIRQTLGTPGYSDLQLASAILT 106
Cdd:pfam09498   2 ASSGDTTSSTTSSFRDDKLVVAARDDAASFVASDGEIRGARLEAALQHLRSENPQLQASDLELAQAILA 70
TIGR02448 TIGR02448
conserverd hypothetical protein; This family consists of small hypothetical proteins, about ...
 7-107 1.15e-22

conserverd hypothetical protein; This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 274137  Cd Length: 101  Bit Score: 84.44  E-value: 1.15e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647497725    7 RLTFLLCACLFADIGqATSLVISTDITMSLALSTTEGSSKATSSFKDDKLVLAAKTDAAAFVASAGEIRGAQLEAAMRHI 86
Cdd:TIGR02448   2 RRKLLLAAALLLSLA-MGAAAASFDATTRAVAASGAVTSDSTSSFRDDKLVIAARDDAASFVASDGAIRGARLEAALRQL 80

                          90       100
                  ....*....|....*....|.
gi 647497725   87 RQTLGTPGYSDLQLASAILTL 107
Cdd:TIGR02448  81 RSDNPALQASDMELAQAILAQ 101
 
Name Accession Description Interval E-value
DUF2388 pfam09498
Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, ...
 38-106 1.72e-23

Protein of unknown function (DUF2388); This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 430648  Cd Length: 70  Bit Score: 85.41  E-value: 1.72e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647497725   38 LSTTEGSSKATSSFKDDKLVLAAKTDAAAFVASAGEIRGAQLEAAMRHIRQTLGTPGYSDLQLASAILT 106
Cdd:pfam09498   2 ASSGDTTSSTTSSFRDDKLVVAARDDAASFVASDGEIRGARLEAALQHLRSENPQLQASDLELAQAILA 70
TIGR02448 TIGR02448
conserverd hypothetical protein; This family consists of small hypothetical proteins, about ...
 7-107 1.15e-22

conserverd hypothetical protein; This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.


Pssm-ID: 274137  Cd Length: 101  Bit Score: 84.44  E-value: 1.15e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647497725    7 RLTFLLCACLFADIGqATSLVISTDITMSLALSTTEGSSKATSSFKDDKLVLAAKTDAAAFVASAGEIRGAQLEAAMRHI 86
Cdd:TIGR02448   2 RRKLLLAAALLLSLA-MGAAAASFDATTRAVAASGAVTSDSTSSFRDDKLVIAARDDAASFVASDGAIRGARLEAALRQL 80

                          90       100
                  ....*....|....*....|.
gi 647497725   87 RQTLGTPGYSDLQLASAILTL 107
Cdd:TIGR02448  81 RSDNPALQASDMELAQAILAQ 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH