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Conserved domains on  [gi|647591465|ref|WP_025868175|]
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MULTISPECIES: conjugative transposon protein TraJ [Bacteroidales]

Protein Classification

conjugative transposon protein TraJ( domain architecture ID 10023795)

conjugative transposon protein TraJ

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Bac_Flav_CT_J TIGR03782
Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated ...
2-313 0e+00

Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]


:

Pssm-ID: 274780  Cd Length: 323  Bit Score: 601.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465    2 NFDNLHQILRSLYEQMMPLCGDMAGVAKGIAGLGALFYVAYRVWQSLARAEPIDVFPMLRPFAIGLCIMFFPTVVLGTIN 81
Cdd:TIGR03782   1 DFDNLHEVLRSLYDEMMPLCSDMTGVAKGIAGLGALFYVALRVWQSLARAEPIDVYPLLRPFALGLCIMFFPTFVLGTIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465   82 SIMSPVVQGTAKMLEAETLDMNRYREQKDKLEYEAMMRNPETAYLVSNEEFDKQLEELGWSPGDMVTMAGMYIECGMYNM 161
Cdd:TIGR03782  81 GVLSPVVQGTHSMLEGQTLDMNRYREQKDKLEYEAMVRDPETAYLVSDEEFDRKLDELGWSPSDMKTMAGMYMERAAYNM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465  162 KKGIRDFFREILELMFQAAALVIDTIRTFFLVVLAILGPIAFAISVWDGFQSTLTQWICRYIQVYLWLPVSDMFSTILAK 241
Cdd:TIGR03782 161 KKSVRDWFRELLELLFQAAALVIDTLRTFFLIVLSILGPIAFAISVYDGFQSTLTQWITRYISIYLWLPVSDLFSSILAR 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 647591465  242 IQVLMLQSDIERMQaDPNFSLDSSDGVYIVFMIIGIIGYFTIPTVAGWIIQAGGMGSYGRNVNQTAGRAGSM 313
Cdd:TIGR03782 241 IQVLMLQKDIAQLQ-DPNFIPDSSNSVYIIFMIIGIIGYFTVPTVSGWIIQAGGGGNYGRNVNSTAMKAGSA 311
 
Name Accession Description Interval E-value
Bac_Flav_CT_J TIGR03782
Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated ...
2-313 0e+00

Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]


Pssm-ID: 274780  Cd Length: 323  Bit Score: 601.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465    2 NFDNLHQILRSLYEQMMPLCGDMAGVAKGIAGLGALFYVAYRVWQSLARAEPIDVFPMLRPFAIGLCIMFFPTVVLGTIN 81
Cdd:TIGR03782   1 DFDNLHEVLRSLYDEMMPLCSDMTGVAKGIAGLGALFYVALRVWQSLARAEPIDVYPLLRPFALGLCIMFFPTFVLGTIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465   82 SIMSPVVQGTAKMLEAETLDMNRYREQKDKLEYEAMMRNPETAYLVSNEEFDKQLEELGWSPGDMVTMAGMYIECGMYNM 161
Cdd:TIGR03782  81 GVLSPVVQGTHSMLEGQTLDMNRYREQKDKLEYEAMVRDPETAYLVSDEEFDRKLDELGWSPSDMKTMAGMYMERAAYNM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465  162 KKGIRDFFREILELMFQAAALVIDTIRTFFLVVLAILGPIAFAISVWDGFQSTLTQWICRYIQVYLWLPVSDMFSTILAK 241
Cdd:TIGR03782 161 KKSVRDWFRELLELLFQAAALVIDTLRTFFLIVLSILGPIAFAISVYDGFQSTLTQWITRYISIYLWLPVSDLFSSILAR 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 647591465  242 IQVLMLQSDIERMQaDPNFSLDSSDGVYIVFMIIGIIGYFTIPTVAGWIIQAGGMGSYGRNVNQTAGRAGSM 313
Cdd:TIGR03782 241 IQVLMLQKDIAQLQ-DPNFIPDSSNSVYIIFMIIGIIGYFTVPTVSGWIIQAGGGGNYGRNVNSTAMKAGSA 311
CtnDOT_TraJ pfam07863
homologs of TraJ from Bacteroides conjugative transposon; Members of this family have been ...
272-312 3.55e-15

homologs of TraJ from Bacteroides conjugative transposon; Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.


Pssm-ID: 400286  Cd Length: 66  Bit Score: 69.30  E-value: 3.55e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 647591465  272 FMIIGIIGYFTIPTVAGWIIQAGGMGSYGRNVNQTAGRAGS 312
Cdd:pfam07863   1 FLLIGIVGYFSVPTVANYIVHAGGGNGLLQKVNSIASSGTS 41
 
Name Accession Description Interval E-value
Bac_Flav_CT_J TIGR03782
Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated ...
2-313 0e+00

Bacteroides conjugative transposon TraJ protein; Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]


Pssm-ID: 274780  Cd Length: 323  Bit Score: 601.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465    2 NFDNLHQILRSLYEQMMPLCGDMAGVAKGIAGLGALFYVAYRVWQSLARAEPIDVFPMLRPFAIGLCIMFFPTVVLGTIN 81
Cdd:TIGR03782   1 DFDNLHEVLRSLYDEMMPLCSDMTGVAKGIAGLGALFYVALRVWQSLARAEPIDVYPLLRPFALGLCIMFFPTFVLGTIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465   82 SIMSPVVQGTAKMLEAETLDMNRYREQKDKLEYEAMMRNPETAYLVSNEEFDKQLEELGWSPGDMVTMAGMYIECGMYNM 161
Cdd:TIGR03782  81 GVLSPVVQGTHSMLEGQTLDMNRYREQKDKLEYEAMVRDPETAYLVSDEEFDRKLDELGWSPSDMKTMAGMYMERAAYNM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647591465  162 KKGIRDFFREILELMFQAAALVIDTIRTFFLVVLAILGPIAFAISVWDGFQSTLTQWICRYIQVYLWLPVSDMFSTILAK 241
Cdd:TIGR03782 161 KKSVRDWFRELLELLFQAAALVIDTLRTFFLIVLSILGPIAFAISVYDGFQSTLTQWITRYISIYLWLPVSDLFSSILAR 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 647591465  242 IQVLMLQSDIERMQaDPNFSLDSSDGVYIVFMIIGIIGYFTIPTVAGWIIQAGGMGSYGRNVNQTAGRAGSM 313
Cdd:TIGR03782 241 IQVLMLQKDIAQLQ-DPNFIPDSSNSVYIIFMIIGIIGYFTVPTVSGWIIQAGGGGNYGRNVNSTAMKAGSA 311
CtnDOT_TraJ pfam07863
homologs of TraJ from Bacteroides conjugative transposon; Members of this family have been ...
272-312 3.55e-15

homologs of TraJ from Bacteroides conjugative transposon; Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.


Pssm-ID: 400286  Cd Length: 66  Bit Score: 69.30  E-value: 3.55e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 647591465  272 FMIIGIIGYFTIPTVAGWIIQAGGMGSYGRNVNQTAGRAGS 312
Cdd:pfam07863   1 FLLIGIVGYFSVPTVANYIVHAGGGNGLLQKVNSIASSGTS 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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