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Conserved domains on  [gi|647614034|ref|WP_025889363|]
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MULTISPECIES: peptidoglycan-associated lipoprotein Pal [Shewanella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10802 super family cl32581
peptidoglycan-associated lipoprotein Pal;
1-179 5.10e-72

peptidoglycan-associated lipoprotein Pal;


The actual alignment was detected with superfamily member PRK10802:

Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 214.73  E-value: 5.10e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   1 MDLNKLFKAIVIAAPLLALGACSSTSESETDASGsttsgsEYGNGAGGVEIGGANPVLSPEEQQRLKFQELRKEHIIYFD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSE------GMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFD 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  81 FDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPL 160
Cdd:PRK10802  75 LDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 154

                        170
                 ....*....|....*....
gi 647614034 161 DMSHTDEGFAKNRRAVLVY 179
Cdd:PRK10802 155 VLGHDEAAYAKNRRAVLVY 173
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-179 5.10e-72

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 214.73  E-value: 5.10e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   1 MDLNKLFKAIVIAAPLLALGACSSTSESETDASGsttsgsEYGNGAGGVEIGGANPVLSPEEQQRLKFQELRKEHIIYFD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSE------GMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFD 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  81 FDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPL 160
Cdd:PRK10802  75 LDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 154

                        170
                 ....*....|....*....
gi 647614034 161 DMSHTDEGFAKNRRAVLVY 179
Cdd:PRK10802 155 VLGHDEAAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 76-179 4.13e-63

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 189.69  E-value: 4.13e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   76 IIYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYG 155
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 647614034  156 EEKPLDMSHTDEGFAKNRRAVLVY 179
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 31-179 1.58e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 146.47  E-value: 1.58e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  31 DASGSTTSGSEYGNGAGGVEIGGANPVLSPEEQQRLKFQELRKEHIIYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVL 110
Cdd:COG2885  143 AAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIE 222

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647614034 111 IEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRRAVLVY 179
Cdd:COG2885  223 IEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 77-178 1.17e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 135.37  E-value: 1.17e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  77 IYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGE 156
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 647614034 157 EKPLDMSHTDEGFAKNRRAVLV 178
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 79-172 1.88e-23

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 88.57  E-value: 1.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   79 FDFDRSEVQTEFAEILEAHGTYLvEHPNVR--VLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGE 156
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLL-KFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 647614034  157 EKPLDMSHTDEGFAKN 172
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-179 5.10e-72

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 214.73  E-value: 5.10e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   1 MDLNKLFKAIVIAAPLLALGACSSTSESETDASGsttsgsEYGNGAGGVEIGGANPVLSPEEQQRLKFQELRKEHIIYFD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSE------GMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFD 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  81 FDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPL 160
Cdd:PRK10802  75 LDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 154

                        170
                 ....*....|....*....
gi 647614034 161 DMSHTDEGFAKNRRAVLVY 179
Cdd:PRK10802 155 VLGHDEAAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 76-179 4.13e-63

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 189.69  E-value: 4.13e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   76 IIYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYG 155
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 647614034  156 EEKPLDMSHTDEGFAKNRRAVLVY 179
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 31-179 1.58e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 146.47  E-value: 1.58e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  31 DASGSTTSGSEYGNGAGGVEIGGANPVLSPEEQQRLKFQELRKEHIIYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVL 110
Cdd:COG2885  143 AAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIE 222

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647614034 111 IEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRRAVLVY 179
Cdd:COG2885  223 IEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 77-178 1.17e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 135.37  E-value: 1.17e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  77 IYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGE 156
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 647614034 157 EKPLDMSHTDEGFAKNRRAVLV 178
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 79-172 1.88e-23

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 88.57  E-value: 1.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   79 FDFDRSEVQTEFAEILEAHGTYLvEHPNVR--VLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGE 156
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLL-KFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 647614034  157 EKPLDMSHTDEGFAKN 172
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
61-178 4.04e-19

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 79.50  E-value: 4.04e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  61 EEQQRLKFQELrkehiIYFDFDRSEVQTEFAEILEAHGTYLVEHPNvRVLIEGHADER--GTPEY--NIALGERRAKAVA 136
Cdd:COG1360   50 EEGLVIEIQDR-----VLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNVpiSTARFpsNWELSAARAAAVV 123

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 647614034 137 KYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRRAVLV 178
Cdd:COG1360  124 RYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIV 165
motB PRK08457
flagellar motor protein MotB; Reviewed
 105-176 2.22e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 57.80  E-value: 2.22e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 647614034 105 PNVRVLIEGHAD--ERGTPEY--NIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRRAV 176
Cdd:PRK08457 154 KQVKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK10510 PRK10510
OmpA family lipoprotein;
3-174 4.32e-10

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 56.42  E-value: 4.32e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   3 LNKLFKAIV-IAAPLLALGACSS---TSESETDASGsttsgseYGNGAGGVeIGGANPVLSPEEQQRLK----------- 67
Cdd:PRK10510   1 MKKRVYLIAaVVSGALAVSGCTTnpyTGEREAGKSG-------IGAGIGSL-VGAGIGALSSSKKDRGKgaligaaagaa 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  68 ----------FQE--LRK-------------EHIIY-------FDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHA 115
Cdd:PRK10510  73 lgggvgyymdVQEakLRDkmrgtgvsvtrsgDNIILnmpnnvtFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYT 152

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 647614034 116 DERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK10510 153 DSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRR 211
PRK09039 PRK09039
peptidoglycan -binding protein;
107-174 2.13e-09

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 55.36  E-value: 2.13e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 647614034 107 VRVliEGHADER---GTPEY--NIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK09039 265 LRV--DGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRR 335
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 92-178 3.49e-09

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 54.63  E-value: 3.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  92 EILEAHGTYLVEHPNvRVLIEGHADER--GTPEY--NIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDE 167
Cdd:PRK09038 150 AILEKVAEVLKPAPN-PIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAE 228

                         90
                 ....*....|.
gi 647614034 168 GFAKNRRAVLV 178
Cdd:PRK09038 229 GRARNRRVVLV 239
PRK06925 PRK06925
flagellar motor protein MotB;
77-178 2.99e-07

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 48.61  E-value: 2.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  77 IYFDFDRSEVQTEFAEILEAHGTYLVEHPNVrVLIEGHADERGTPEY----NIALGERRAKAVAKYL-QGMGVLPSQMSI 151
Cdd:PRK06925 120 VLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPISTYrypsNWELSAARASSVIRYFtSKEKLDSSRFIA 198

                         90       100
                 ....*....|....*....|....*..
gi 647614034 152 VSYGEEKPLDMSHTDEGFAKNRRAVLV 178
Cdd:PRK06925 199 VGYADTKPVVPNTTEENMQENRRVEIV 225
PRK09967 PRK09967
OmpA family protein;
3-178 8.15e-07

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 46.51  E-value: 8.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034   3 LNKLFKAIVIAAPLLAlgACSSTSESETDASGSTTSGSEYGNGAGGVEIGGANPVLSPEEQQRLkfqelRKEhiiyfdfD 82
Cdd:PRK09967   2 IKHLVAPLIFTSLILT--GCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKL-----LPE-------S 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  83 RSEVQTeFAEILEAHGtylVEHPNvrvlIEGHADERGTPEYNIALGERRAKAVAK-YLQGMGVLPSQMSIVSYGEEKPLD 161
Cdd:PRK09967  68 QQQIQT-MAAKLASTG---LTHAR----MDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQGLGKKYPIA 139

                        170
                 ....*....|....*..
gi 647614034 162 MSHTDEGFAKNRRAVLV 178
Cdd:PRK09967 140 SNKTAQGRAENRRVAVV 156
PRK10808 PRK10808
outer membrane protein A; Reviewed
 79-178 5.72e-06

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 45.45  E-value: 5.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  79 FDFDRSEVQTEFAEILEAHGTYLVE-HPNV-RVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGE 156
Cdd:PRK10808 228 FNFNKATLKPEGQQALDQLYSQLSNlDPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGK 307

                         90       100
                 ....*....|....*....|..
gi 647614034 157 EKPLDMSHTDEgfaKNRRAVLV 178
Cdd:PRK10808 308 SNPVTGNTCDN---VKPRAALI 326
motB PRK08944
flagellar motor protein MotB; Reviewed
 85-174 2.13e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 43.46  E-value: 2.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  85 EVQTEFAEILEAHGTYLVEHPNvRVLIEGHADERGTP--EY--NIALGERRAKAVAKYL-QGMGVLPSQMSIVSYGEEKP 159
Cdd:PRK08944 189 FLQPKFKPVVRKIGELLKDVPG-IITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELlKVKGFDPQRLKVVGMADTQP 267

                         90
                 ....*....|....*
gi 647614034 160 LDMSHTDEGFAKNRR 174
Cdd:PRK08944 268 LVPNDTAENRARNRR 282
PRK08126 PRK08126
hypothetical protein; Provisional
 108-174 3.40e-05

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 43.14  E-value: 3.40e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 647614034 108 RVLIEGHADE-----RGTPEyNIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK08126 355 KVTVTGHTDNqpirsAQFAS-NLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRR 425
motB PRK07734
flagellar motor protein MotB; Reviewed
 77-174 4.05e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 42.42  E-value: 4.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  77 IYFDFDRSEVQTEFAEILEAHGTYLVEHPNVRVLIEGHADErgTPEYNIALGERRAKAVAKYLQGMGVL-------PSQM 149
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDN--VPIANAQFASNWELSVMRAVNFMQVLlenkeldPEKF 221

                         90       100
                 ....*....|....*....|....*
gi 647614034 150 SIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK07734 222 SAKGYGEYKPIASNDTAEGRAKNRR 246
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 79-177 5.74e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 41.97  E-value: 5.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  79 FDFDRSEVQTEFAEILEAHGTYLVEHPNvRVLIEGHADERgtPEYNIAL-------GERRAKAVAKYLQGMGVLPSQMSI 151
Cdd:PRK06742 119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSR--PIHNDKFpsnwelsSARAANMIHHLIEVYNVDDKRLAA 195

                         90       100
                 ....*....|....*....|....*.
gi 647614034 152 VSYGEEKPLDMSHTDEGFAKNRRAVL 177
Cdd:PRK06742 196 VGYADTKPVVPNDSPQNWEKNRRVVI 221
PRK07033 PRK07033
DotU family type VI secretion system protein;
108-174 3.94e-03

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 36.95  E-value: 3.94e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 647614034 108 RVLIEGHADER--GTPEY--NIALGERRAKAVAKYLQGMGVLPSQMSIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK07033 346 NVLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRR 416
PRK09040 PRK09040
hypothetical protein; Provisional
 79-174 6.36e-03

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 36.15  E-value: 6.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647614034  79 FDFDRSEVQTEFAEILEAH----GTYLVEHPNVrVLIEGHADER----GTPEY--NIALGERRAKAVAKYLQGMGVLPSQ 148
Cdd:PRK09040  92 FALNSDQLQPEGRELLKSLagplAAYLRARDEI-LMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPASS 170

                         90       100
                 ....*....|....*....|....*.
gi 647614034 149 MSIVSYGEEKPLDMSHTDEGFAKNRR 174
Cdd:PRK09040 171 VFAAAFGSEQPVASNADDEGRAKNRR 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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