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Conserved domains on  [gi|647640258|ref|WP_025912814|]
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MULTISPECIES: zinc ribbon domain-containing protein [Enterobacter]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10537594)

zinc ribbon domain-containing protein similar to Escherichia coli YfgJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 4.09e-28

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


:

Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 95.41  E-value: 4.09e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647640258   5 CPDCQAPLEPQNGVAHCESCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 4.09e-28

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 95.41  E-value: 4.09e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647640258   5 CPDCQAPLEPQNGVAHCESCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 3-56 3.34e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 34.07  E-value: 3.34e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647640258   3 ITCPDCQAPLEPQNG-----VAhCES---CN------KDIALEARCPECHQPLQVLKA-CGAVDYFCQN 56
Cdd:COG0551  587 EKCPKCGKPLVIKKGrygkfLG-CSNypeCKytkplpKPEVTGVKCPKCGKKLVLRKSkKGKVFYGCSN 654
ligA PRK07956
NAD-dependent DNA ligase LigA; Validated
 34-57 7.80e-03

NAD-dependent DNA ligase LigA; Validated


Pssm-ID: 236137 [Multi-domain]  Cd Length: 665  Bit Score: 32.79  E-value: 7.80e-03
                         10        20
                 ....*....|....*....|....
gi 647640258  34 CPECHQPLqvLKACGAVDYFCQNG 57
Cdd:PRK07956 407 CPVCGSEL--VRVEGEAVLRCTNG 428
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 4.09e-28

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 95.41  E-value: 4.09e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 647640258   5 CPDCQAPLEPQNGVAHCESCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 3-56 3.34e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 34.07  E-value: 3.34e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 647640258   3 ITCPDCQAPLEPQNG-----VAhCES---CN------KDIALEARCPECHQPLQVLKA-CGAVDYFCQN 56
Cdd:COG0551  587 EKCPKCGKPLVIKKGrygkfLG-CSNypeCKytkplpKPEVTGVKCPKCGKKLVLRKSkKGKVFYGCSN 654
PriA COG1198
Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, ...
 2-49 3.57e-03

Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair];


Pssm-ID: 440811 [Multi-domain]  Cd Length: 728  Bit Score: 33.94  E-value: 3.57e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 647640258   2 TITCPDCQAPLE--PQNGVAHCESCNKDIALEARCPECHQPLqvLKACGA 49
Cdd:COG1198  441 VAKCPNCDVSLTyhRSRRRLRCHYCGYEEPVPKQCPECGSDS--LRPFGP 488
ligA PRK07956
NAD-dependent DNA ligase LigA; Validated
 34-57 7.80e-03

NAD-dependent DNA ligase LigA; Validated


Pssm-ID: 236137 [Multi-domain]  Cd Length: 665  Bit Score: 32.79  E-value: 7.80e-03
                         10        20
                 ....*....|....*....|....
gi 647640258  34 CPECHQPLqvLKACGAVDYFCQNG 57
Cdd:PRK07956 407 CPVCGSEL--VRVEGEAVLRCTNG 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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