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Conserved domains on  [gi|648269517|ref|WP_026050666|]
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DM13 domain-containing protein [Vibrio vulnificus]

Protein Classification

DM13 domain-containing protein( domain architecture ID 10565061)

DM13 domain-containing protein, may be an electron transfer protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 63-154 5.93e-21

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


:

Pssm-ID: 463130  Cd Length: 105  Bit Score: 81.91  E-value: 5.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648269517   63 HWGEGKL-VIDAQSIAFSG--ELAPGPDYKLYLSPT-FIETEADFLANKEQLVRVGDVKTF---DRFILPIPSDVDVANY 135
Cdd:pfam10517   7 HGTSGTVyIVDDRTLELEGfaTDGPGPDLYVWLGDSpVPSGKDGFKVPDEDGVTLGPLKGYsgeQRYTLTLPAGVDLADY 86

                          90
                  ....*....|....*....
gi 648269517  136 TTAIVWCESFDQFISSAKY 154
Cdd:pfam10517  87 KSVSIWCERFNVNFGAAPL 105
 
Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 63-154 5.93e-21

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 81.91  E-value: 5.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648269517   63 HWGEGKL-VIDAQSIAFSG--ELAPGPDYKLYLSPT-FIETEADFLANKEQLVRVGDVKTF---DRFILPIPSDVDVANY 135
Cdd:pfam10517   7 HGTSGTVyIVDDRTLELEGfaTDGPGPDLYVWLGDSpVPSGKDGFKVPDEDGVTLGPLKGYsgeQRYTLTLPAGVDLADY 86

                          90
                  ....*....|....*....
gi 648269517  136 TTAIVWCESFDQFISSAKY 154
Cdd:pfam10517  87 KSVSIWCERFNVNFGAAPL 105
 
Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 63-154 5.93e-21

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 81.91  E-value: 5.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648269517   63 HWGEGKL-VIDAQSIAFSG--ELAPGPDYKLYLSPT-FIETEADFLANKEQLVRVGDVKTF---DRFILPIPSDVDVANY 135
Cdd:pfam10517   7 HGTSGTVyIVDDRTLELEGfaTDGPGPDLYVWLGDSpVPSGKDGFKVPDEDGVTLGPLKGYsgeQRYTLTLPAGVDLADY 86

                          90
                  ....*....|....*....
gi 648269517  136 TTAIVWCESFDQFISSAKY 154
Cdd:pfam10517  87 KSVSIWCERFNVNFGAAPL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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