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Conserved domains on  [gi|648328017|ref|WP_026080590|]
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MULTISPECIES: DUF1828 domain-containing protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1828 super family cl07454
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 29-101 2.23e-10

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


The actual alignment was detected with superfamily member pfam08861:

Pssm-ID: 430268  Cd Length: 90  Bit Score: 56.06  E-value: 2.23e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648328017   29 SPFtYYDDSEHISVFVQEMSG-QYRITDYCDTLMNIEARGIHL-TKKKIDLIRSSLASQGITLNDsGEISAWADE 101
Cdd:pfam08861   1 TPF-LDEDGDAIQIYVKKREGdRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLED-GELIVKATA 73
 
Name Accession Description Interval E-value
DUF1828 pfam08861
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 29-101 2.23e-10

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


Pssm-ID: 430268  Cd Length: 90  Bit Score: 56.06  E-value: 2.23e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648328017   29 SPFtYYDDSEHISVFVQEMSG-QYRITDYCDTLMNIEARGIHL-TKKKIDLIRSSLASQGITLNDsGEISAWADE 101
Cdd:pfam08861   1 TPF-LDEDGDAIQIYVKKREGdRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLED-GELIVKATA 73
 
Name Accession Description Interval E-value
DUF1828 pfam08861
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 29-101 2.23e-10

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


Pssm-ID: 430268  Cd Length: 90  Bit Score: 56.06  E-value: 2.23e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648328017   29 SPFtYYDDSEHISVFVQEMSG-QYRITDYCDTLMNIEARGIHL-TKKKIDLIRSSLASQGITLNDsGEISAWADE 101
Cdd:pfam08861   1 TPF-LDEDGDAIQIYVKKREGdRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLED-GELIVKATA 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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