NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|648448069|ref|WP_026139820|]
View 

MULTISPECIES: flagellar basal body rod protein FlgF [Pseudomonas]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-246 1.69e-150

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 1.69e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMT 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 648448069 241 RVLAMS 246
Cdd:PRK12640 241 QLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-246 1.69e-150

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 1.69e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMT 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 648448069 241 RVLAMS 246
Cdd:PRK12640 241 QLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-246 2.65e-138

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 387.95  E-value: 2.65e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMT 240
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQAAN 240


                 ....*.
gi 648448069 241 RVLAMS 246
Cdd:COG4787  241 QLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 5-223 3.34e-55

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 176.67  E-value: 3.34e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069    5 LYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMP---VFGDSfPARAFAMTERPATDFSPGAMIETGRDLDVA 81
Cdd:TIGR03506   3 LYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLsqsVSGSG-QVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   82 VSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIM-GNGGPIAVPPQ-QKIEVGADGTVSIRAMGEGPRvmaEV 159
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLdWGGGPITLPPDaGSVSIGEDGTVSATYSNGQTV---EL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648448069  160 DRIKLVQ-PDLKNMTKGLDGTIHTKDGQ------PAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFE 223
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSgaalvgAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQ 229
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 171-241 3.50e-15

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 68.06  E-value: 3.50e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648448069  171 NMTKGLDGTIHTKDGQP-AQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMTR 241
Cdd:pfam06429   2 GLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-246 1.69e-150

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 1.69e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMT 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 648448069 241 RVLAMS 246
Cdd:PRK12640 241 QLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-246 2.65e-138

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 387.95  E-value: 2.65e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMT 240
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQAAN 240


                 ....*.
gi 648448069 241 RVLAMS 246
Cdd:COG4787  241 QLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 5-223 3.34e-55

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 176.67  E-value: 3.34e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069    5 LYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMP---VFGDSfPARAFAMTERPATDFSPGAMIETGRDLDVA 81
Cdd:TIGR03506   3 LYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLsqsVSGSG-QVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   82 VSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIM-GNGGPIAVPPQ-QKIEVGADGTVSIRAMGEGPRvmaEV 159
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLdWGGGPITLPPDaGSVSIGEDGTVSATYSNGQTV---EL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648448069  160 DRIKLVQ-PDLKNMTKGLDGTIHTKDGQ------PAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFE 223
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSgaalvgAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQ 229
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-206 1.62e-44

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 148.84  E-value: 1.62e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERPATDFSPGAMIETGRDLDV 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAgNGMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTV-QGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLG 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTKGLDGTIH----TKDGQPAQADANVKLTSGFLQASNV 206
Cdd:PRK12643 160 QIKRVQATAGEMMHGDDGLFHltpeTQQARGAQLPNDPLVKPGEREHQWL 209
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-242 4.44e-43

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 146.50  E-value: 4.44e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   5 LYVAMTGASQNALAQKAHANNLANISTNGFQRD-----------LEQARSMPVFGDSFPARA----FAMTERPATDFSPG 69
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDravfedllyqlIRRPGAPSSQGTQTPVGLqlgtGVRVAATQTDFTQG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  70 AMIETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQ-QKIEVGADGTVSIRA 148
Cdd:COG4786   81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPVLPENGPITIPEDaTSITISEDGTVSVTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 149 MGEGPRvmaEVDRIKLVQPD----LKNMTKGL----DGTIHTKDGQPAQaDANVKLTSGFLQASNVNAVEEMTAVLALSK 220
Cdd:COG4786  161 ADGDGQ---QVGQLGLVDFAnpagLEKVGDNLfretAASGAPIVGTPGE-DGLGTLRQGYLEGSNVDVVEEMVDMIEAQR 236

                        250       260
                 ....*....|....*....|..
gi 648448069 221 QFELHIKMMNSAkedDQAMTRV 242
Cdd:COG4786  237 AYEANSKVIQTA---DEMLGKA 255
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-243 4.85e-35

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 125.44  E-value: 4.85e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERpaTDFSPGAMIETGRDLDV 80
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFILAIQNHNVKNLYNSDKKITKEY--YNLSPGTLRYTGRNLDL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  81 AVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNgMPIMGNGGPIAVPPQQKIEVGADGTVSIRAMGEGPRVMAEVD 160
Cdd:PRK12641  79 FIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQN-NEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 161 RIKLVQPDLKNMTK---GL-----DGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSA 232
Cdd:PRK12641 158 SLKLVQLPSQDLIQkenGLfylkkNNEINKKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISMC 237

                        250
                 ....*....|.
gi 648448069 233 KEDDQAMTRVL 243
Cdd:PRK12641 238 DQNTEYANQLI 248
flgF PRK12689
flagellar basal-body rod protein FlgF;
23-236 3.47e-34

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 123.32  E-value: 3.47e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  23 ANNLANISTNGF--QRDLEQARSMPV-FGDSF--PARAFAMTERPAT--DFSPGAMIETGRDLDVAVSGDGWMAVQTPdG 95
Cdd:PRK12689  23 ANNVANVNTNGFkaRSSLFQEYLMPGaHEDNFqrPDRRVSYVQDRGTplDLSQGPLEQTKNPLDVAIDGDAFLAVQTP-Q 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  96 GEAYVRSASMNVDALGVLRAGNGMPIMGNGGPIAVPPQQK-IEVGADGTVSIRamgEGPRVMAEV-DRIKLVQ-PDLKNM 172
Cdd:PRK12689 102 GERYTRDGALEINAQGQLVTSDGYPVLGTGGPITFQPTDTgIAISPDGTVSVN---EGTATTDSIrGKLRLVTfANPQAL 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648448069 173 TKgLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMnsAKEDD 236
Cdd:PRK12689 179 KK-EGANLYAATAPARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSML--QQQSD 239
flgF PRK12690
flagellar hook-basal body complex protein;
1-246 1.25e-27

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 105.54  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTgaSQNALAQKAH--ANNLANISTNGFQRD----LEQARSMPVFGDSFP-ARAFAMTerpaTDFSPGAMIE 73
Cdd:PRK12690   1 MDNAGYTTLT--RQSGLMREMQvvANNIANASTTGFRREglvfSEYVKSLDSGEASLSmARASGRQ----TDLEQGGLTQ 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  74 TGRDLDVAVSGDGWMAVQTPDgGEAYVRSASMNVDALGVLRAGNGMPIMGNGG-PIAVPPQQK-IEVGADGTVSirAMGE 151
Cdd:PRK12690  75 TGGQFDFAIEGEGFFMVETPQ-GERLTRAGSFTPNAEGELVDPDGNRLLDAGGaPIFIPPDARsVAVGADGTLS--ADGQ 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 152 gprvmaEVDRIKLVQPDLKNMTKGLDGTIHTKDG--QPAQadaNVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMM 229
Cdd:PRK12690 152 ------PLGQIGLYQPTDPLGLRREGGTRFRAEGgvEPAE---GARLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFL 222

                        250
                 ....*....|....*..
gi 648448069 230 NsaKEDDQAMTRVLAMS 246
Cdd:PRK12690 223 D--REDERIRTTIRTLG 237
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-231 1.80e-27

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 105.52  E-value: 1.80e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTgaSQNALAQK--AHANNLANISTNGFQRD-------LEQARSMPVfgdsfparAFAMTERPATDFSPGAM 71
Cdd:PRK12642   1 MQSGLYVALS--SQMALEKRldTIADNVANVNTVGFRATevkfdtvVSDTASKKV--------AFVSQGKSYLSTEAGPL 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  72 IETGRDLDVAVSGDGWMAVQTPDgGEAYVRSASMNVDALGVLRAGNGMPIMGNGG-PIAVPPQQ-KIEVGADGTvsIRAM 149
Cdd:PRK12642  71 TKTGNPLDFAVKGDAWFSFDTPA-GQVYTRDGRFTMTSTGELVSVTGYPVLDAGGaPIQLNPGGgEPTIGADGA--IYQN 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 150 GegprvmAEVDRIKLVQPDL-KNMTK-GLDGTIHTKDGQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIK 227
Cdd:PRK12642 148 G------VQVGAIGLFEIDAdAGLLRyGNSGVIPDKPPQPVVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESVSS 221


                 ....
gi 648448069 228 MMNS 231
Cdd:PRK12642 222 LMRQ 225
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-234 1.59e-23

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 95.31  E-value: 1.59e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASqnalAQKAH----ANNLANISTNGFQRdleqarSMPVFGDSF-------PARAFAMTERP------- 62
Cdd:PRK12693   1 MIRALWIAKTGLD----AQQTNidviSNNLANVNTTGFKK------SRAVFEDLLyqtirqpGAQSSQNTTLPsglqvgt 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  63 -----ATD--FSPGAMIETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNggpIAVPPQ-Q 134
Cdd:PRK12693  71 gvrpvATQkiFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPE---ITIPENaT 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 135 KIEVGADGTVSIRAMGEGPrvMAEVDRIKLV--------QPDLKNM-------------TKGLDGTihtkdGQPAQadan 193
Cdd:PRK12693 148 SITIGTDGTVSVTQAGQAA--PQVVGQITLTdfinpaglESIGENLyletaasgapiegTPGLNGL-----GTLRQ---- 216

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 648448069 194 vkltsGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKE 234
Cdd:PRK12693 217 -----GFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQ 252
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 128-223 3.32e-21

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 84.60  E-value: 3.32e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  128 IAVPPQQKIEVGADGTVSiramGEGprvmAEVDRIKLVQPD-LKNMTKGLDGTIHTKDGQPAQADANVKLTSGFLQASNV 206
Cdd:TIGR02490   1 IVLPPDGDITIGADGTIS----QDG----EEVGRLGLVNFDnPNQLQREGDGLFRATGGGPAPADSNVRVVQGYLEGSNV 72

                          90
                  ....*....|....*..
gi 648448069  207 NAVEEMTAVLALSKQFE 223
Cdd:TIGR02490  73 NAVSEMVDMIEAQRAYE 89
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 12-234 1.80e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 81.66  E-value: 1.80e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  12 ASQNALaqKAHANNLANISTNGFQR------DLEQA----RSMPVFGDSfpaRAFAMTERPAT----DFSPGAMIETGRD 77
Cdd:PRK12817  14 AQQEKL--DSISNNLANVNTTGYKRedvsfsDLVYEtldrKGYPTNDKP---EIITGTGVKATnwirDNQQGNLLTTGNK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  78 LDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVL--RAGNGMPIMGNGGPIAVPP-----QQKIEVGADGTVSIRAMG 150
Cdd:PRK12817  89 TDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLvdDNGNRLEIQLEAGVGINNRntgfdSNNFTVDEDGGISVKNVD 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 151 EGPRVmaeVDRIKLVQPdlknmtKGLDGTIHTKDG--QPAQaDANVKLTS------GFLQASNVNAVEEMTAVLALSKQF 222
Cdd:PRK12817 169 GQNKK---VGKINIYNA------VGNDAFISIGDNlyVPSD-GVQVFLNNdvdilqGYLENSNVDLGKEMTDMIITQRAF 238

                        250
                 ....*....|..
gi 648448069 223 ELHIKMMNSAKE 234
Cdd:PRK12817 239 QLSSKGIKTADE 250
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-234 9.50e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 79.74  E-value: 9.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRD----------LEQARSMPVFGDSFPARAFAMT-----ERPATD 65
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDnlafksfedvLIENYDKKVGNKNVKNIIGGLSmgskiDEVNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  66 FSPGAMIETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNG------GPIAVpPQQKIEVG 139
Cdd:PRK12818  81 FTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLGRNnatgarEPINV-GNGKFSTD 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 140 ADGTVSIramgEGPrvmaEVDRIKLVQ-PDLKNMTKGLDgTIHTKDGQPAQADANVKltSGFLQASNVNAVEEMTAVLAL 218
Cdd:PRK12818 160 ADGNISL----DGN----ASYKFNVADfNDYNSLKKIGD-NLYTGNNPQNINGAIVR--QNSLEKSNVNVTNEMVNMMTT 228

                        250
                 ....*....|....*.
gi 648448069 219 SKQFELHIKMMNSAKE 234
Cdd:PRK12818 229 MRSFETNQKIVQSIDE 244
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-227 3.31e-16

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 75.61  E-value: 3.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASqnalAQKAH----ANNLANISTNGFQR---DLEQARSMPVFGDSFPARAfaMTERP----------- 62
Cdd:PRK12816   1 MMRSLWTAASGMN----AQQFNidtiANNLANVNTTGFKKiraEFEDLIYQTQRRAGTPATE--DTVTPlgvqvghgvkv 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  63 -ATD--FSPGAMIETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMgngGPIAVPP---QQKI 136
Cdd:PRK12816  75 aATQrlFEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLL---PEIIFPEnyiLNSI 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 137 EVGADGTVSIRAMGEG-PRVMAEVDRIKLVQP-----DLKNMTKGLDGTIHTKDGQPAQaDANVKLTSGFLQASNVNAVE 210
Cdd:PRK12816 152 TISEEGIVSVKVGEDNdPIELGQIELYRFVNPaglsaIGKNLFKETIASGQEIPGIPGS-EGFGRVLQGFLEMSNVSIVE 230

                        250
                 ....*....|....*..
gi 648448069 211 EMTAVLALSKQFELHIK 227
Cdd:PRK12816 231 EMVTMIVAQRAYEINSK 247
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 3-234 2.52e-15

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 72.96  E-value: 2.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   3 KYLYVAMTGASQNALAQKAHANNLANISTNGFQR------DL----EQARSMP--VFGDSFPARA-FAMTERPATD---F 66
Cdd:PRK12692   2 RALAIAATGMSAQQLNLEVIANNIANLNTTGFKGaraeftDLlyqaERQQGVPnqAGQEAVPEGAmLGLGVRAAAIrnlH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  67 SPGAMIETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPImgngGPIAVPPQQKIEVGADGTVSI 146
Cdd:PRK12692  82 RQGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAV----DPAILIPQNTTQVTINESGQV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 147 RAMGEGPRVMAEVDRIKLV----QPDLKNMTKGLDGTIhTKDGQPA---QADANV-KLTSGFLQASNVNAVEEMTAVLAL 218
Cdd:PRK12692 158 FAKIDGQVAPQNLGQLTLAnfanESGLEPLGNGLYRET-PASGAPVvgnPGDVGFgKIQQGYLEGSNVDPVKEITSLITA 236

                        250
                 ....*....|....*.
gi 648448069 219 SKQFELHIKMMNSAKE 234
Cdd:PRK12692 237 QRAFEMNSKVIQAADE 252
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 171-241 3.50e-15

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 68.06  E-value: 3.50e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648448069  171 NMTKGLDGTIHTKDGQP-AQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQAMTR 241
Cdd:pfam06429   2 GLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 23-234 1.06e-14

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 71.32  E-value: 1.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  23 ANNLANISTNGFQRD---LEQARSMPVFGDSFPARAF-----------AMTERPATDFSPGAMIETGRDLDVAVSGDGWM 88
Cdd:PRK12636  23 GNNIANVNTYGFKKSrvtFKDMVSQTISGASGPTANRggvnskqvglgSQLGAIDTIHTQGSLQTTGRPLDLAISGDGFF 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  89 AVQTPDgGEAYVRSASMNVDALGVLRAGNGMPIMG-NGGPIAVPPQ-QKIEVGADGTVSIRAMGEGPRVMAEVDRIKLVQ 166
Cdd:PRK12636 103 RVGDGD-NTAYTRAGNFYLDNEGNIVNADGLYLLGmNGGRIQIPTDaQSFSIGADGTVSYVDAGGELQTAGQIGLATFAN 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 167 PDlknmtkGLD-------------GTIHTkdGQPaQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAK 233
Cdd:PRK12636 182 PD------GLEkagdnlyretlnsGTPSA--VVP-GEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSD 252


                 .
gi 648448069 234 E 234
Cdd:PRK12636 253 E 253
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
5-147 2.44e-12

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 65.58  E-value: 2.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   5 LYVAMTG--ASQNALAqkAHANNLANISTNGFQRdleqarSMPVFGDSF---PARAFAM-------TERPATDFSPGAMI 72
Cdd:COG1749    5 FNTGVSGlnAASTALD--VIGNNIANSNTVGFKS------SRAEFADLVaqsLSGANPTqvgggvrVASVAQIFTQGSLQ 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648448069  73 ETGRDLDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMGNggpiAVPPQQKIEVGADGTVSIR 147
Cdd:COG1749   77 STGNALDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGY----PADADGTIPDTGGGLEPIQ 147
flgE PRK06803
flagellar basal body protein FlaE;
23-123 1.14e-07

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 51.70  E-value: 1.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  23 ANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTErpatDFSPGAMIE-TGRDLDVAVSGDGWMAVQTPDGGEAYVR 101
Cdd:PRK06803  21 SNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQ----NFSKDGSLTyTGRGLDLAISGGGFFVLKESDGDTAYTR 96

                         90       100
                 ....*....|....*....|..
gi 648448069 102 SASMNVDALGVLRAGNGMPIMG 123
Cdd:PRK06803  97 AGMFRSDVDGYLTDPQGMKLQG 118
flgE PRK05682
flagellar hook protein FlgE; Validated
 5-130 3.19e-06

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 47.52  E-value: 3.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   5 LYVAMTG--ASQNALAqkAHANNLANISTNGFQRdleqarSMPVFGDSFPARAFA---------MTERPATDFSPGAMIE 73
Cdd:PRK05682   3 FNTAVSGlnAASNRLD--VIGNNIANANTTGFKS------SRAEFADLYANSAGTnptqvgsgvKVAGVAQQFSQGSITS 74

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648448069  74 TGRDLDVAVSGDGWMAVQTPDGGEaYVRSASMNVDALGVLRAGNGMPIMG-----NGGPIAV 130
Cdd:PRK05682  75 TGNSLDLAISGNGFFVVSNGGNGF-YTRAGAFKLDKNGYLVNAAGYYLQGypadaDGGTPPT 135
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 176-245 3.06e-05

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 42.91  E-value: 3.06e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648448069 176 LDGtIHTKDGQPAQA-DANVKLTS--GFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKeddQAMTRVLAM 245
Cdd:PRK12628  70 LDG-IYESDAEPHRRyDPNSPIADkdGFVYTSNINYVEEMANIISASRSYQMNIELLNTTK---QLMQRTLQL 138
flgE PRK08425
flagellar hook protein FlgE; Validated
 1-148 3.28e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 41.61  E-value: 3.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRdleqarSMPVFGDsfparAFAMTERPATD--------------- 65
Cdd:PRK08425   1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKY------SRASFVD-----MLSQTKLIATApkgglggqndmqigl 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  66 ----------FSPGAMIETGRDLDVAVSGDGWMAVqTPDGG--EAYVRSASMNVDALGVLRAGNGMPIMG---------- 123
Cdd:PRK08425  70 gvgvssttkiFSQGSIQNTDKNTDLAIQGDGFFIV-SPDGGttRNYTRDGDFKFDAQGNFVNNGGYVVQGwvsdtdtgti 148

                        170       180
                 ....*....|....*....|....*....
gi 648448069 124 -NGGP---IAVPPQQKIEVGADGTVSIRA 148
Cdd:PRK08425 149 dSTGPiqnIRIDPGMVMPARASTEVSIKA 177
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 9.42e-04

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 35.62  E-value: 9.42e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 648448069    5 LYVAMTGASQNALAQKAHANNLANISTNGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-231 4.56e-03

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 37.55  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069   3 KYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPV----FGDSFPARAFAMTE---RPAT---DFSPGAMI 72
Cdd:PRK12819   2 NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVqdtyRRGDGAVTNIGSVDyavVPAAthvNLVQGNIQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069  73 ETGRD----LDVAVSGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMPIMG-NGGPIAVPPQQKIEVGADGT---- 143
Cdd:PRK12819  82 MTNSDtdffLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVMGeNNERIRIPEGAKVAVQADGTlyda 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648448069 144 VSIRAMGE-GPRVMAEVDRIKLVQPDLKNMTKGLDGTIHTKDGQpaqadANVKltSGFLQASNVNAVEEMTAVLALSKQF 222
Cdd:PRK12819 162 VTQNNIARlQTKTVSAEQNDRLVQRENKSFTLAEGNIANLPNGQ-----GIVK--NGMLENSNVDMTKEMADLMTDQRMI 234


                 ....*....
gi 648448069 223 ELHIKMMNS 231
Cdd:PRK12819 235 QASQRVMTS 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH