|
Name |
Accession |
Description |
Interval |
E-value |
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-232 |
6.66e-139 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 388.57 E-value: 6.66e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFFL-NREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLLGAYARrDRAEVRADLERVYELFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLG 232
Cdd:COG0410 163 PSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLG 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-223 |
1.11e-123 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 349.81 E-value: 1.11e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGGFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLN 223
Cdd:cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-232 |
4.11e-117 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 333.77 E-value: 4.11e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLG 232
Cdd:PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
2-220 |
9.77e-77 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 230.87 E-value: 9.77e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGGFFLNREEIEAgLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKI-PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANL 220
Cdd:TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEgGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-232 |
2.75e-60 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 189.86 E-value: 2.75e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAi 80
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGIA- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 spegR-----RVFPDLNVLENLQMG--------------GFFLNREEIEAGLEHVFEL--FPRLRERATQRSGLMSGGEQ 139
Cdd:COG0411 83 ----RtfqnpRLFPELTVLENVLVAaharlgrgllaallRLPRARREEREARERAEELleRVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 140 QMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGA 218
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPA 238
|
250
....*....|....
gi 648465099 219 NLLLNDQVGKAYLG 232
Cdd:COG0411 239 EVRADPRVIEAYLG 252
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-212 |
2.98e-57 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 181.48 E-value: 2.98e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLais 81
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 peGR-----RVFPDLNVLENLQMGG---------FFLNREEIEAGLEHVFEL--FPRLRERATQRSGLMSGGEQQMLAIG 145
Cdd:cd03219 78 --GRtfqipRLFPELTVLENVMVAAqartgsgllLARARREEREARERAEELleRVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 146 RALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
11-221 |
1.01e-53 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 172.56 E-value: 1.01e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRKGLAISPEGRRVFPD 90
Cdd:COG1131 10 YGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEV--RRRIGYVPQEPALYPD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENLQ-MGGFF-LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI 168
Cdd:COG1131 88 LTVRENLRfFARLYgLPRKEARERIDELLELF-GLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648465099 169 IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:COG1131 167 RRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-232 |
1.14e-51 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 167.33 E-value: 1.14e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQ--MGGFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:cd03218 81 PQEASIFRKLTVEENILavLEIRGLSKKEREEKLEELLEEF-HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLG 232
Cdd:cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-232 |
5.00e-48 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 157.88 E-value: 5.00e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLEN----LQMggFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:COG1137 83 LPQEASIFRKLTVEDNilavLEL--RKLSKKEREERLEELLEEF-GITHLRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLG 232
Cdd:COG1137 160 LDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLG 235
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
2-233 |
1.33e-46 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 154.35 E-value: 1.33e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGGFF---LNREEIEAGLEHVFELF--PRLREratQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMAVLEIrkdLDRAEREERLEALLEEFqiSHLRD---NKAMSLSGGERRRVEIARALATNPKFIL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLGH 233
Cdd:TIGR04406 159 LDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLGE 235
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-216 |
4.49e-45 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 150.78 E-value: 4.49e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRKGLAI 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREA--RRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFF--LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELygLFDEELKKRIEELIELL-GLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGS 215
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-211 |
2.96e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 141.00 E-value: 2.96e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRKGLAIS 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEV--KRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQmggfflnreeieaglehvfelfprlreratqrsglMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:cd03230 79 PEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
12-210 |
2.78e-41 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 139.91 E-value: 2.78e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAI-SPE----GR 85
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLVFqNPDdqffGP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 RVFPDLN-VLENLQmggffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03225 92 TVEEEVAfGLENLG-----LPEEEIEERVEEALELV-GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 165 APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:cd03225 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-220 |
4.16e-41 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 143.31 E-value: 4.16e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimrkglai 80
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLP----------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 sPEGRRV---------FPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRA 147
Cdd:COG3842 74 -PEKRNVgmvfqdyalFPHLTVAENvafgLRMRG--VPKAEIRARVAELLELV-GLEGLADRYPHQLSGGQQQRVALARA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 148 LMSKPRMLLLDEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANL 220
Cdd:COG3842 150 LAPEPRVLLLDEPLSALdAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-232 |
7.15e-41 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 140.03 E-value: 7.15e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLqMGGFF----LNREEIEAGLEHVFELF--PRLRERATQRsglMSGGEQQMLAIGRALMSKPRML 155
Cdd:PRK10895 84 PQEASIFRRLSVYDNL-MAVLQirddLSAEQREDRANELMEEFhiEHLRDSMGQS---LSGGERRRVEIARALAANPKFI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 156 LLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAYLG 232
Cdd:PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLG 236
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-215 |
8.79e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 138.81 E-value: 8.79e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimRKGLAIS 81
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE---RRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMG--GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGlkLRGVPKAEIRARVRELLELV-GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 160 PTLGLAPLIIEQIF-EIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHD 215
Cdd:cd03259 157 PLSALDAKLREELReELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
12-221 |
4.34e-40 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 137.46 E-value: 4.34e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLaispegrrVF-- 88
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGL--------VFqn 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDL-----NVLENL-----QMGgffLNREEIEAGLEHVFELF--PRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:COG1122 84 PDDqlfapTVEEDVafgpeNLG---LPREEIRERVEEALELVglEHLADRPPHE---LSGGQKQRVAIAGVLAMEPEVLV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:COG1122 158 LDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVF 222
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-233 |
4.46e-40 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 137.94 E-value: 4.46e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLai 80
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGI-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 speGR-----RVFPDLNVLENLQMG-----------GFFLNREEIEAgLEHVFELFpRLRERATQRSGLMSGGEQQMLAI 144
Cdd:COG4674 88 ---GRkfqkpTVFEELTVFENLELAlkgdrgvfaslFARLTAEERDR-IEEVLETI-GLTDKADRLAGLLSHGQKQWLEI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 145 GRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGiTVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLND 224
Cdd:COG4674 163 GMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKH-SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQADP 241
|
....*....
gi 648465099 225 QVGKAYLGH 233
Cdd:COG4674 242 RVIEVYLGR 250
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-230 |
7.82e-40 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 137.48 E-value: 7.82e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAI 80
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARR-IAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMG-----GFF--LNREEIEA--------GLEHvfelfprLRERATQRsglMSGGEQQMLAIG 145
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGryphlGLFgrPSAEDREAveealertGLEH-------LADRPVDE---LSGGERQRVLIA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 146 RALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLND 224
Cdd:COG1120 150 RALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPE 229
|
....*.
gi 648465099 225 QVGKAY 230
Cdd:COG1120 230 LLEEVY 235
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-213 |
2.80e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 136.37 E-value: 2.80e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSI----NSGYG-AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMR 75
Cdd:COG1101 1 MLELKNLsktfNPGTVnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KglaISpegrRVF--------PDLNVLENLQM----GGFF-----LNREEIEAGLEHVFELFPRLRERATQRSGLMSGGE 138
Cdd:COG1101 81 Y---IG----RVFqdpmmgtaPSMTIEENLALayrrGKRRglrrgLTKKRRELFRELLATLGLGLENRLDTKVGLLSGGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 139 QQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:COG1101 154 RQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIIL 229
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-232 |
6.25e-39 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 135.12 E-value: 6.25e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMG-------GFF--------LNREEIEAgLEHVFELFPR--LRERATQRSGLMSGGEQQMLA 143
Cdd:PRK11300 85 TFQHVRLFREMTVIENLLVAqhqqlktGLFsgllktpaFRRAESEA-LDRAATWLERvgLLEHANRQAGNLAYGQQRRLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLL 222
Cdd:PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
250
....*....|
gi 648465099 223 NDQVGKAYLG 232
Cdd:PRK11300 244 NPDVIKAYLG 253
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
8-211 |
1.28e-38 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 133.38 E-value: 1.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 8 NSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKglaispegRR- 86
Cdd:cd03255 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF--------RRr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 ----VF------PDLNVLENLQMGGFF--LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRM 154
Cdd:cd03255 83 higfVFqsfnllPDLTALENVELPLLLagVPKKERRERAEELLERV-GLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKAlQIADRGYVLETGRI 211
Cdd:cd03255 162 ILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-161 |
3.81e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 130.08 E-value: 3.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElPTHAIMRKGLAISPEGRRVFPDLNVLEN 96
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTD-DERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMGG--FFLNREEIEAGLEHVFELFPR---LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:pfam00005 80 LRLGLllKGLSKREKDARAEEALEKLGLgdlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-212 |
2.77e-37 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 130.16 E-value: 2.77e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSIN----SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimRK 76
Cdd:COG1136 4 LLELRNLTksygTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLS-----ER 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 GLAispEGRR-----VF------PDLNVLENLQMGGFF--LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLA 143
Cdd:COG1136 79 ELA---RLRRrhigfVFqffnllPELTALENVALPLLLagVSRKERRERARELLERV-GLGDRLDHRPSQLSGGQQQRVA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 144 IGRALMSKPRMLLLDEPT------LGlapliiEQIFEIIKTI-RDDGITVFLVEQNaNKALQIADRGYVLETGRIV 212
Cdd:COG1136 155 IARALVNRPKLILADEPTgnldskTG------EEVLELLRELnRELGTTIVMVTHD-PELAARADRVIRLRDGRIV 223
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-212 |
2.88e-37 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 129.79 E-value: 2.88e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKG 77
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIpyLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAISPEGRRVFPDLNVLEN----LQMGGFflNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPR 153
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENvalpLRVTGK--SRKEIRRRVREVLDLV-GLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 154 MLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVF-------LVEQNANKALQIADrgyvletGRIV 212
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEINRRGTTVLiathdleLVDRMPKRVLELED-------GRLV 216
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-212 |
5.01e-37 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 129.22 E-value: 5.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVRT-GSIHFMGEDISELPTHAI-MR 75
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndlIPGAPDeGEVLLDGKDIYDLDVDVLeLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KGLAISPEGRRVFPdLNVLENLQMG----GFFLNR---EEIEAGLEHVfELFPRLRERATQRSglMSGGEQQMLAIGRAL 148
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGlrlhGIKLKEeldERVEEALRKA-ALWDEVKDRLHALG--LSGGQQQRLCLARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 149 MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-212 |
7.50e-37 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 129.22 E-value: 7.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAI-QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKGL 78
Cdd:cd03256 1 IEVENLSKTYPNGkKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AISPEGRRVFPDLNVLENLQMGGF-----------FLNREEIEAGLehvfELFPR--LRERATQRSGLMSGGEQQMLAIG 145
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLgrrstwrslfgLFPKEEKQRAL----AALERvgLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 146 RALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-212 |
8.18e-37 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 128.64 E-value: 8.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGA----IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRK 76
Cdd:cd03266 1 MITADALTKRFRDvkktVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA--RR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 GLAISPEGRRVFPDLNVLENLQ-MGGFF-LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRM 154
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLEyFAGLYgLKGDELTARLEELADRL-GMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-210 |
5.88e-36 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 124.99 E-value: 5.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIselpthaiMRKGLAIS 81
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL--------TDLEDELP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRV---------FPDLNVLENLQMGgfflnreeieaglehvfelfprlreratqrsglMSGGEQQMLAIGRALMSKP 152
Cdd:cd03229 73 PLRRRIgmvfqdfalFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDP 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTIRD-DGITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-214 |
1.71e-35 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 125.90 E-value: 1.71e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGE--DISELPTHAIMRkgla 79
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPSDKAIR---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ispEGRR----VF------PDLNVLENLqmggfflnreeIEA-----GL------EHVFELFPRLR--ERATQRSGLMSG 136
Cdd:PRK11124 79 ---ELRRnvgmVFqqynlwPHLTVQQNL-----------IEApcrvlGLskdqalARAEKLLERLRlkPYADRFPLHLSG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 137 GEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLH 214
Cdd:PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
10-215 |
2.15e-35 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 124.95 E-value: 2.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaiMRKGLAISPEGRRV-- 87
Cdd:cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK------ERKRIGYVPQRRSIdr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 -FPdLNVLENLQMG-----GFFLN-----REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:cd03235 82 dFP-ISVRDVVLMGlyghkGLFRRlskadKAKVDEALERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRgYVLETGRIVLHD 215
Cdd:cd03235 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-233 |
2.52e-35 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 125.51 E-value: 2.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGE--DISELPTHAIMRkgla 79
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKAIR---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ispEGRR----VF------PDLNVLENL-----QMGGffLNREE-IEAGLEHVFELfpRLRERATQRSGLMSGGEQQMLA 143
Cdd:COG4161 79 ---LLRQkvgmVFqqynlwPHLTVMENLieapcKVLG--LSKEQaREKAMKLLARL--RLTDKADRFPLHLSGGQQQRVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTgANLLLN 223
Cdd:COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQ 230
|
250
....*....|..
gi 648465099 224 DQVG--KAYLGH 233
Cdd:COG4161 231 PQTEafAHYLSH 242
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-212 |
2.76e-35 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 122.92 E-value: 2.76e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISelpthaimrkglais 81
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 pegrrvfpdlnvlenlqmggfFLN-REEIEAGLEHVFELfprlreratqrsglmSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:cd03216 66 ---------------------FASpRDARRAGIAMVYQL---------------SVGERQMVEIARALARNARLLILDEP 109
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-212 |
3.78e-35 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 130.14 E-value: 3.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMG-----GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRML 155
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGreprrGGLIDWRAMRRRARELLARL-GLDIDPDTPVGDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 156 LLDEPTLGLAPLIIEQIFEIIKTIRDDGITV-----FLVEqnankALQIADRGYVLETGRIV 212
Cdd:COG1129 163 ILDEPTASLTEREVERLFRIIRRLKAQGVAIiyishRLDE-----VFEIADRVTVLRDGRLV 219
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-216 |
5.32e-35 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 124.82 E-value: 5.32e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISE-------LPTHAI 73
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRarrrigyVPQRAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 74 MRKGlaispegrrvFPdLNVLENLQMG-----GFFLN-----REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLA 143
Cdd:COG1121 86 VDWD----------FP-ITVRDVVLMGrygrrGLFRRpsradREAVDEALERV-----GLEDLADRPIGELSGGQQQRVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:COG1121 150 LARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPP 222
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-212 |
5.64e-35 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 122.54 E-value: 5.64e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 3 KLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAISP 82
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK-IAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 83 EgrrvfpdlnVLENLqmggfflnreeieaGLEHvfelfprLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEPTL 162
Cdd:cd03214 80 Q---------ALELL--------------GLAH-------LADRPFNE---LSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 163 GLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03214 127 HLDIAHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
11-210 |
7.69e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 121.58 E-value: 7.69e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAIspegrrvfpd 90
Cdd:cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGY---------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 lnvlenlqmggfflnreeieaglehVFELfprlreratqrsglmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIE 170
Cdd:cd00267 78 -------------------------VPQL---------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE 117
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 648465099 171 QIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:cd00267 118 RLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-216 |
3.26e-34 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 122.40 E-value: 3.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRkgl 78
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELyeLR--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 aispegRRV---------FPDLNVLENLqmgGFFL------NREEIEA---------GLEHVFELFPrlreratqrSGLm 134
Cdd:COG1127 82 ------RRIgmlfqggalFDSLTVFENV---AFPLrehtdlSEAEIRElvleklelvGLPGAADKMP---------SEL- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 135 SGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:COG1127 143 SGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIA 222
|
...
gi 648465099 214 HDT 216
Cdd:COG1127 223 EGT 225
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
11-220 |
5.39e-34 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 121.32 E-value: 5.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaiMRKGLAISPEGRRVFPD 90
Cdd:cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE--VRRRIGIVFQDLSVDDE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENLQMGG--FFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI 168
Cdd:cd03265 88 LTGWENLYIHArlYGVPGAERRERIDELLDFV-GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648465099 169 IEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANL 220
Cdd:cd03265 167 RAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-212 |
6.49e-34 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 121.83 E-value: 6.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGA----IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIselpTHAIMRk 76
Cdd:COG1124 1 MLEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV----TRRRRK- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 glaispEGRR----VFPD----LN--------VLENLQMGGFFLNREEIEAGLEHVfELFPRLRERatqRSGLMSGGEQQ 140
Cdd:COG1124 76 ------AFRRrvqmVFQDpyasLHprhtvdriLAEPLRIHGLPDREERIAELLEQV-GLPPSFLDR---YPHQLSGGQRQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 141 MLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1124 146 RVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIV 218
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-212 |
1.22e-33 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 120.80 E-value: 1.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimRKGLAIS 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH---KRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:cd03300 78 FQNYALFPHLTVFENiafgLRLKK--LPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03300 155 DEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-214 |
1.65e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 119.69 E-value: 1.65e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImrkglAIS 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI-----GYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENL----QMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:cd03269 76 PEERGLYPKMKVIDQLvylaQLKG--LKKEEARRRIDEWLERL-ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLH 214
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-212 |
4.27e-33 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 119.36 E-value: 4.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQaLHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimRKGLAIS 81
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE---KRDISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMG--GFFLNREEIEA---------GLEHVFELFPRLreratqrsglMSGGEQQMLAIGRALMS 150
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGlkKRKVDKKEIERkvleiaemlGIDHLLNRKPET----------LSGGEQQRVAIARALVV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 151 KPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-211 |
1.01e-32 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 118.02 E-value: 1.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTH-AIMRKGLAI 80
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNiNELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFFLNREEIEAGLEHVFELFPR--LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKvgLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
12-225 |
1.52e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 123.47 E-value: 1.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG---NPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRRVF 88
Cdd:COG1123 17 GDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALRGRRIGMVFQDPMTQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLENLQMG--GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:COG1123 97 NPVTVGDQIAEAleNLGLSRAEARARVLELLEAV-GLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDV 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 167 LIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQ 225
Cdd:COG1123 176 TTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQ 235
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-212 |
2.78e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.22 E-value: 2.78e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSIN----SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTH--AIM 74
Cdd:cd03257 1 LLEVKNLSvsfpTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRlrKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RKGLAIspegrrVFPD----LN--------VLENLQMGGFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQML 142
Cdd:cd03257 81 RKEIQM------VFQDpmssLNprmtigeqIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-212 |
3.35e-32 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 117.02 E-value: 3.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTH-AIMRkgla 79
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDiNKLR---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ispegRRV---------FPDLNVLENLQMG-----GffLNREEIEAG----LEHVfelfpRLRERATQRSGLMSGGEQQM 141
Cdd:COG1126 77 -----RKVgmvfqqfnlFPHLTVLENVTLApikvkK--MSKAEAEERamelLERV-----GLADKADAYPAQLSGGQQQR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 142 LAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1126 145 VAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIV 215
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-211 |
3.67e-32 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 116.45 E-value: 3.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEgrrvfPDL---NVLENL----QMGGFFLNREEIEAGLEHvFELFPRLRERATQRsglMSGGEQQMLAIGRALMSKPRM 154
Cdd:COG4619 81 QE-----PALwggTVRDNLpfpfQLRERKFDRERALELLER-LGLPPDILDKPVER---LSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIR-DDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREYLaEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
10-216 |
4.46e-32 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 116.83 E-value: 4.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHA--IMRKGLAISPEGRRV 87
Cdd:cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAElyRLRRRMGMLFQSGAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 FPDLNVLENLqmgGFFL------NREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:cd03261 89 FDSLTVFENV---AFPLrehtrlSEEEIREIVLEKLEAV-GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:cd03261 165 AGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
11-213 |
6.50e-32 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 115.78 E-value: 6.50e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPThAIMRKGLAIspEGRRVFPD 90
Cdd:cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-ALRRIGALI--EAPGFYPN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENLQMGG--FFLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI 168
Cdd:cd03268 87 LTARENLRLLArlLGIRKKRIDEVLDVV-----GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648465099 169 IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:cd03268 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-210 |
1.03e-31 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 115.42 E-value: 1.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKG 77
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLplLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAISPEGRRVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFPrLRERATQRSGLMSGGEQQMLAIGRALMSKPR 153
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENvalpLEVRG--KKEREIQRRVGAALRQVG-LEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 154 MLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-212 |
1.47e-31 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 115.04 E-value: 1.47e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimRKGLAIS 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK---DRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLEN----LQMGGFflNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:cd03301 78 FQNYALYPHMTVYDNiafgLKLRKV--PKDEIDERVREVAELL-QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 158 DEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03301 155 DEPLSNLdAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
12-225 |
3.59e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 119.62 E-value: 3.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpthaimrKGLAISPEGRRV---- 87
Cdd:COG1123 276 GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKL-------SRRSLRELRRRVqmvf 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 -------FPDLNVLENLQMG---GFFLNREEIEAGLEHVFELFpRLRERATQRS-GLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:COG1123 349 qdpysslNPRMTVGDIIAEPlrlHGLLSRAERRERVAELLERV-GLPPDLADRYpHELSGGQRQRVAIARALALEPKLLI 427
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQ 225
Cdd:COG1123 428 LDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
16-212 |
4.92e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 113.75 E-value: 4.92e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRKGLAISPEGRRVFPDLNVLE 95
Cdd:cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA--RQSLGYCPQFDALFDELTVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQmggFF-----LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIE 170
Cdd:cd03263 95 HLR---FYarlkgLPKSEIKEEVELLLRVL-GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648465099 171 QIFEIIKTIRdDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03263 171 AIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
16-211 |
1.07e-30 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 111.75 E-value: 1.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR---VFPDLN 92
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKregLVLDLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 VLENLqmggfFLNReeieaglehvfelfprlreratqrsgLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQI 172
Cdd:cd03215 95 VAENI-----ALSS--------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
|
170 180 190
....*....|....*....|....*....|....*....
gi 648465099 173 FEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:cd03215 144 YRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-210 |
3.52e-30 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 113.75 E-value: 3.52e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGlaIS 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG--VV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGG--FFLNREEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK13537 86 PQFDNLDPDFTVRENLLVFGryFGLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-224 |
4.98e-30 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 111.72 E-value: 4.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGedISELPTHAIMRkglAI 80
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG--LKVNDPKVDER---LI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVF------PDLNVLENLQMGGFFLNREEIEAGLEHVFELFPR--LRERATQRSGLMSGGEQQMLAIGRALMSKP 152
Cdd:PRK09493 76 RQEAGMVFqqfylfPHLTALENVMFGPLRVRGASKEEAEKQARELLAKvgLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIvLHDTGANLLLND 224
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI-AEDGDPQVLIKN 226
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
9-212 |
5.83e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 111.02 E-value: 5.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 9 SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimrkgLAISPEGRRVF 88
Cdd:cd03293 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD------RGYVFQQDALL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03293 86 PWLTVLDNvalgLELQG--VPKAEARERAEELLELV-GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 165 APLIIEQIF-EIIKTIRDDGITVFLVEQNANKALQIADRGYVLET--GRIV 212
Cdd:cd03293 163 DALTREQLQeELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-212 |
8.39e-30 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 113.63 E-value: 8.39e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimrkglai 80
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLP----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 sPEGRRV---------FPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRA 147
Cdd:COG3839 72 -PKDRNIamvfqsyalYPHMTVYENiafpLKLRK--VPKAEIDRRVREAAELL-GLEDLLDRKPKQLSGGQRQRVALGRA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 148 LMSKPRMLLLDEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG3839 148 LVREPKVFLLDEPLSNLdAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-188 |
6.13e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 107.95 E-value: 6.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAimRKGLAI 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDY--RRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQ----MGGFFLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:COG4133 80 LGHADGLKPELTVRENLRfwaaLYGLRADREAIDEALEAV-----GLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWL 154
|
170 180 190
....*....|....*....|....*....|..
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFL 188
Cdd:COG4133 155 LDEPFTALDAAGVALLAELIAAHLARGGAVLL 186
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-216 |
1.03e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 109.43 E-value: 1.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--Mrkgl 78
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIgyL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 aisPEGRRVFPDLNVLENLqmgGFF-----LNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPR 153
Cdd:COG4152 77 ---PEERGLYPKMKVGEQL---VYLarlkgLSKAEAKRRADEWLERL-GLGDRANKKVEELSKGNQQKVQLIAALLHDPE 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 154 MLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITV-F------LVEqnankalQIADRGYVLETGRIVLHDT 216
Cdd:COG4152 150 LLILDEPFSGLDPVNVELLKDVIRELAAKGTTViFsshqmeLVE-------ELCDRIVIINKGRKVLSGS 212
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
16-221 |
2.51e-28 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 112.23 E-value: 2.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAISPEGRRVFPDlNVLE 95
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASL-RRQIGVVLQDVFLFSG-TIRE 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLNREEIE-----AGLEHVFELFP-----RLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:COG2274 568 NITLGDPDATDEEIIeaarlAGLHDFIEALPmgydtVVGEGGSN----LSGGQRQRLAIARALLRNPRILILDEATSALD 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 166 P----LIIEQIFEIIKtirddGITVFLVeqnANK--ALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:COG2274 644 AeteaIILENLRRLLK-----GRTVIII---AHRlsTIRLADRIIVLDKGRIVEDGTHEELL 697
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-212 |
2.76e-28 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 107.48 E-value: 2.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSIN----SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL-PTHAIMr 75
Cdd:COG1116 7 ALELRGVSkrfpTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPgPDRGVV- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 kglaisPEGRRVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSK 151
Cdd:COG1116 86 ------FQEPALLPWLTVLDNvalgLELRG--VPKAERRERARELLELV-GLAGFEDAYPHQLSGGMRQRVAIARALAND 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 152 PRMLLLDEPTLGLAPLIIEQI-FEIIKTIRDDGITVFLVEQNANKALQIADRGYVLET--GRIV 212
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLqDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIV 220
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-225 |
5.46e-28 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 106.13 E-value: 5.46e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSIN----SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimRK 76
Cdd:cd03258 1 MIELKNVSkvfgDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS-----GK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 GLaisPEGRR----VFPDLN------VLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQML 142
Cdd:cd03258 76 EL---RKARRrigmIFQHFNllssrtVFENvalpLEIAG--VPKAEIEERVLELLELV-GLEDKADAYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
....
gi 648465099 222 LNDQ 225
Cdd:cd03258 230 ANPQ 233
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-227 |
6.81e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 108.38 E-value: 6.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIselPTHA-IMRKGLAI 80
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV---PARArLARARIGV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGG--FFLNREEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:PRK13536 119 VPQFDNLDLEFTVRENLLVFGryFGMSTREIEAVIPSLLE-FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLhDTGANLLLNDQVG 227
Cdd:PRK13536 198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA-EGRPHALIDEHIG 265
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-230 |
7.29e-28 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 106.35 E-value: 7.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAI 80
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARR-RAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRV-FPdLNVLENLQMG--GFFLNREEIEAGLEHVFELF--PRLRERATQRsglMSGGEQQMLAIGRAL------- 148
Cdd:COG4559 80 LPQHSSLaFP-FTVEEVVALGraPHGSSAAQDRQIVREALALVglAHLAGRSYQT---LSGGEQQRVQLARVLaqlwepv 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 149 MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGK 228
Cdd:COG4559 156 DGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLER 235
|
..
gi 648465099 229 AY 230
Cdd:COG4559 236 VY 237
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-212 |
8.32e-28 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 107.93 E-value: 8.32e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDiseLPTHaimrkglaIS 81
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD---LFTN--------LP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRV---------FPDLNVLENLqmgGFFL-----NREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRA 147
Cdd:COG1118 72 PRERRVgfvfqhyalFPHMTVAENI---AFGLrvrppSKAEIRARVEELLELV-QLEGLADRYPSQLSGGQRQRVALARA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 148 LMSKPRMLLLDEPtLG-----LAPLIIEQIFEIIKTIrddGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1118 148 LAVEPEVLLLDEP-FGaldakVRKELRRWLRRLHDEL---GGTTVFVTHDQEEALELADRVVVMNQGRIE 213
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
12-211 |
1.45e-27 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 104.41 E-value: 1.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKGLAISPEGRRVFP 89
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIpyLRRKIGVVFQDFRLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMG------GFFLNREEIEAGLEHVfELFPRLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:cd03292 92 DRNVYENVAFAlevtgvPPREIRKRVPAALELV-GLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGN 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:cd03292 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-211 |
1.82e-27 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 107.73 E-value: 1.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimrkglais 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP------------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRV---------FPDLNVLEN----LQMGGffLNREEIEaglEHVFELFP--RLRERATQRSGLMSGGEQQMLAIGR 146
Cdd:PRK09452 83 AENRHVntvfqsyalFPHMTVFENvafgLRMQK--TPAAEIT---PRVMEALRmvQLEEFAQRKPHQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 147 ALMSKPRMLLLDEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK09452 158 AVVNKPKVLLLDESLSALdYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-212 |
4.09e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 105.93 E-value: 4.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSIN----SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--M 74
Cdd:COG1135 1 MIELENLSktfpTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELraA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RKGLAIspegrrVFPDLN------VLEN----LQMGGffLNREEIEaglEHVFELFPR--LRERATQRSGLMSGGEQQML 142
Cdd:COG1135 81 RRKIGM------IFQHFNllssrtVAENvalpLEIAG--VPKAEIR---KRVAELLELvgLSDKADAYPSQLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1135 150 GIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIV 220
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-223 |
4.42e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 103.92 E-value: 4.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQ-ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgNPRVR--TGSIHFMGEDISELPTHAIMRK-G 77
Cdd:cd03295 1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEptSGEIFIDGEDIREQDPVELRRKiG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAISPEGrrVFPDLNVLENLqmggfflnreEIEAGLEHVFElfPRLRERATQRSGLM---------------SGGEQQML 142
Cdd:cd03295 79 YVIQQIG--LFPHMTVEENI----------ALVPKLLKWPK--EKIRERADELLALVgldpaefadryphelSGGQQQRV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
..
gi 648465099 222 LN 223
Cdd:cd03295 225 RS 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
16-212 |
4.86e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 107.81 E-value: 4.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR---VFPDLN 92
Cdd:COG3845 273 ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAYIPEDRLgrgLVPDMS 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 VLENLQMG---------GFFLNREEIEAGLEHVFELF----PRLRERAtqrsGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:COG3845 353 VAENLILGryrrppfsrGGFLDRKAIRAFAEELIEEFdvrtPGPDTPA----RSLSGGNQQKVILARELSRDPKLLIAAQ 428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 160 PTLGL---ApliIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG3845 429 PTRGLdvgA---IEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-232 |
6.94e-27 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 103.30 E-value: 6.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAiQALHdVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimrkglai 80
Cdd:COG3840 1 MLRLDDLTYRYGD-FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALP----------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 sPEGRRV---------FPDLNVLENLQMG---GFFLNREEIEAglehvfelfprlRERATQRSGL----------MSGGE 138
Cdd:COG3840 68 -PAERPVsmlfqennlFPHLTVAQNIGLGlrpGLKLTAEQRAQ------------VEQALERVGLaglldrlpgqLSGGQ 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 139 QQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTG 217
Cdd:COG3840 135 RQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPT 214
|
250
....*....|....*..
gi 648465099 218 ANLL--LNDQVGKAYLG 232
Cdd:COG3840 215 AALLdgEPPPALAAYLG 231
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
11-211 |
7.67e-27 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 103.19 E-value: 7.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaIMRKGLAISPEGRRVFPD 90
Cdd:cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQERNVGFVFQHYALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENLQMG------GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03296 89 MTVFDNVAFGlrvkprSERPPEAEIRAKVHELLKLV-QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 165 APLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:cd03296 168 DAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
16-212 |
1.60e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.26 E-value: 1.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL-PTHAImRKGLAISPEGRR---VFPDL 91
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRsPRDAI-RAGIAYVPEDRKgegLVLDL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMG-------GFFLNREEIEAGLEHVFElfpRLRERA---TQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:COG1129 346 SIRENITLAsldrlsrGGLLDRRRERALAEEYIK---RLRIKTpspEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 162 LGlapliI-----EQIFEIIKTIRDDGITVFLV-----EqnankALQIADRGYVLETGRIV 212
Cdd:COG1129 423 RG-----IdvgakAEIYRLIRELAAEGKAVIVIsselpE-----LLGLSDRILVMREGRIV 473
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
12-221 |
1.76e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 106.77 E-value: 1.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAISPEGRRVFPDl 91
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW-RRQIAWVPQNPYLFAG- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIE-----AGLEHVFELFP-----RLRERAtqrSGLmSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:COG4988 426 TIRENLRLGRPDASDEELEaaleaAGLDEFVAALPdgldtPLGEGG---RGL-SGGQAQRLALARALLRDAPLLLLDEPT 501
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 162 lglAPLIIEQIFEIIKTIRD--DGITVFLVEQNAnKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:COG4988 502 ---AHLDAETEAEILQALRRlaKGRTVILITHRL-ALLAQADRILVLDDGRIVEQGTHEELL 559
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-212 |
2.60e-26 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 101.74 E-value: 2.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLD----SINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimRK 76
Cdd:COG4181 8 IIELRgltkTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALD-----ED 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 GLAispEGRR-----VF------PDLNVLEN----LQMGGFFLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQM 141
Cdd:COG4181 83 ARA---RLRArhvgfVFqsfqllPTLTALENvmlpLELAGRRDARARARALLERV-----GLGHRLDHYPAQLSGGEQQR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 142 LAIGRALMSKPRMLLLDEPTLGL----APLIIEQIFEIiktIRDDGITVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:COG4181 155 VALARAFATEPAILFADEPTGNLdaatGEQIIDLLFEL---NRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLV 225
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-221 |
3.85e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 105.62 E-value: 3.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGY--GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLA 79
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDL-RRRIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFPDlNVLENLQMGGFFLNREEIE-----AGLEHVFELFP-----RLRERATQrsglMSGGEQQMLAIGRALM 149
Cdd:COG4987 413 VVPQRPHLFDT-TLRENLRLARPDATDEELWaalerVGLGDWLAALPdgldtWLGEGGRR----LSGGERRRLALARALL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 150 SKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGiTVFLVEQNANkALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:COG4987 488 RDAPILLLDEPTEGLDAATEQALLADLLEALAGR-TVLLITHRLA-GLERMDRILVLEDGRIVEQGTHEELL 557
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-212 |
4.44e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 105.11 E-value: 4.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGE--DISElPTHAImRKGL 78
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRS-PRDAI-ALGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AISPEGRRVFPDLNVLENLQMG-----GFFLNREEIEAglehvfelfpRLRERAtQRSGL----------MSGGEQQMLA 143
Cdd:COG3845 83 GMVHQHFMLVPNLTVAENIVLGleptkGGRLDRKAARA----------RIRELS-ERYGLdvdpdakvedLSVGEQQRVE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG3845 152 ILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVV 220
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
17-212 |
3.16e-25 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 97.98 E-value: 3.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP--RVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRRVFPDLNVL 94
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 EnlqmggfFLnREeieaglehVFELFprlreratqrsglmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFE 174
Cdd:cd03217 96 D-------FL-RY--------VNEGF--------------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAE 145
|
170 180 190
....*....|....*....|....*....|....*....
gi 648465099 175 IIKTIRDDGITVFLVEQNANKALQI-ADRGYVLETGRIV 212
Cdd:cd03217 146 VINKLREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIV 184
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-212 |
3.17e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 99.00 E-value: 3.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-NPRVRTGSIHFMG-----EDISELpthaim 74
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGdLPPTYGNDVRLFGerrggEDVWEL------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RK--GLaISPE-GRRVFPDLNVLENLqMGGFF--------LNREEIEAGLEhVFELFpRLRERATQRSGLMSGGEQQMLA 143
Cdd:COG1119 77 RKriGL-VSPAlQLRFPRDETVLDVV-LSGFFdsiglyrePTDEQRERARE-LLELL-GLAHLADRPFGTLSQGEQRRVL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDG-ITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1119 153 IARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGRVV 222
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-210 |
4.89e-25 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 96.68 E-value: 4.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYG--AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLA 79
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFPDlNVLENLqmggfflnreeieaglehvfelfprlreratqrsglMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:cd03228 80 YVPQDPFLFSG-TIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIRdDGITVFLVEQNANkALQIADRGYVLETGR 210
Cdd:cd03228 123 ATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TIRDADRIIVLDDGR 171
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
19-211 |
5.19e-25 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 100.57 E-value: 5.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaiMRKGLAISPEGRRV---------FP 89
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFD------SRKGIFLPPEKRRIgyvfqearlFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMGGFFLNREEIEAGLEHVFELF---PRLReratQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPtlgLAP 166
Cdd:TIGR02142 89 HLSVRGNLRYGMKRARPSERRISFERVIELLgigHLLG----RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP---LAA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 167 LIIEQIFEII---KTIRDD-GITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:TIGR02142 162 LDDPRKYEILpylERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRV 210
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-212 |
5.98e-25 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 98.69 E-value: 5.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTH------AIM 74
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAelarrrAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RKGLAISpegrrvFPdLNVLENLQMGGFFLNREEIE-----------AGLEHvfelfprLRERATQRsglMSGGEQQMLA 143
Cdd:PRK13548 82 PQHSSLS------FP-FTVEEVVAMGRAPHGLSRAEddalvaaalaqVDLAH-------LAGRDYPQ---LSGGEQQRVQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 144 IGRALM------SKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK13548 145 LARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLaHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-212 |
3.69e-24 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 98.33 E-value: 3.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY----GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaimRK 76
Cdd:PRK11153 1 MIELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS-----EK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 GLAispEGRR----VFPDLNVL------EN----LQMGGffLNREEIEAgleHVFELFPR--LRERATQRSGLMSGGEQQ 140
Cdd:PRK11153 76 ELR---KARRqigmIFQHFNLLssrtvfDNvalpLELAG--TPKAEIKA---RVTELLELvgLSDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 141 MLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-218 |
6.11e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 98.38 E-value: 6.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAI 80
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGgfflnREEIEAGLEHVFELFPRLRERATQRSGL----------MSGGEQQMLAIGRALMS 150
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVEMG-----RTPHRSRFDTWTETDRAAVERAMERTGVaqfadrpvtsLSGGERQRVLLARALAQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 151 KPRMLLLDEPTLGLAplIIEQI--FEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIvlHDTGA 218
Cdd:PRK09536 157 ATPVLLLDEPTASLD--INHQVrtLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRV--RAAGP 222
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
17-212 |
6.62e-24 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 95.05 E-value: 6.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHID---EGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaiMRKGLAISPEGRRV------ 87
Cdd:cd03297 10 LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFD------SRKKINLPPQQRKIglvfqq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 ---FPDLNVLENLQMGGFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03297 84 yalFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 165 -APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03297 163 dRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
11-212 |
1.46e-23 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 95.10 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVR-TGSIHFMGEDISelpthaimrkGLAISPEG- 84
Cdd:COG1117 21 YGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmndlIPGARvEGEILLDGEDIY----------DPDVDVVEl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 -RRV---------FPdLNVLENLQMG----GFfLNREEIE---------AGL-EHVFElfpRLRERATqrsGLmSGGEQQ 140
Cdd:COG1117 91 rRRVgmvfqkpnpFP-KSIYDNVAYGlrlhGI-KSKSELDeiveeslrkAALwDEVKD---RLKKSAL---GL-SGGQQQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 141 MLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG1117 162 RLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAFFYLGELV 232
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-212 |
1.66e-23 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 94.93 E-value: 1.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYG----AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISelpthaimrk 76
Cdd:COG4525 3 MLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVT---------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 77 glaiSPEGRR--VF------PDLNVLEN----LQMGGffLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAI 144
Cdd:COG4525 73 ----GPGADRgvVFqkdallPWLNVLDNvafgLRLRG--VPKAERRARAEELLALV-GLADFARRRIWQLSGGMRQRVGI 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 145 GRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLET--GRIV 212
Cdd:COG4525 146 ARALAADPRFLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIV 216
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-220 |
1.91e-23 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 97.67 E-value: 1.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIS 81
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGGF-----FLNREEIEAgleHVFELFPRLRER--ATQRSGLMSGGEQQMLAIGRALMSKPRM 154
Cdd:PRK11288 85 YQELHLVPEMTVAENLYLGQLphkggIVNRRLLNY---EAREQLEHLGVDidPDTPLKYLSIGQRQMVEIAKALARNARV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV-LHDTGANL 220
Cdd:PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVaTFDDMAQV 228
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
19-212 |
3.01e-23 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 95.94 E-value: 3.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaiMRKGLAISPEGRRV---------FP 89
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQD------SARGIFLPPHRRRIgyvfqearlFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMGGFFLNREEIEAGLEHVFELF---PRLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPtlgLAP 166
Cdd:COG4148 91 HLSVRGNLLYGRKRAPRAERRISFDEVVELLgigHLLDRRPAT----LSGGERQRVAIGRALLSSPRLLLMDEP---LAA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 167 LII---EQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG4148 164 LDLarkAEILPYLERLRDElDIPILYVSHSLDEVARLADHVVLLEQGRVV 213
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-212 |
3.57e-23 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 97.20 E-value: 3.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-NPR-VRTGSIHFMGEDISELPTHAIMRKGL 78
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvYPHgTWDGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AISPEGRRVFPDLNVLENLQMGgfflNREEIEAGLEHVFELFPR----LRE------RATQRSGLMSGGEQQMLAIGRAL 148
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLG----NEITLPGGRMAYNAMYLRaknlLRElqldadNVTRPVGDYGGGQQQLVEIAKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 149 MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-189 |
3.63e-23 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 92.93 E-value: 3.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN--PRVRT-GSIHFMGEDISELPTHaimRKG 77
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTlsPAFSAsGEVLLNGRRLTALPAE---QRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAISPEGRRVFPDLNVLENLQMG-----GFFLNREEIE-----AGLEHVFELFPrlrerATqrsglMSGGEQQMLAIGRA 147
Cdd:COG4136 78 IGILFQDDLLFPHLSVGENLAFAlpptiGRAQRRARVEqaleeAGLAGFADRDP-----AT-----LSGGQRARVALLRA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 148 LMSKPRMLLLDEPTLGL-APL---IIEQIFEiikTIRDDGITVFLV 189
Cdd:COG4136 148 LLAEPRALLLDEPFSKLdAALraqFREFVFE---QIRQRGIPALLV 190
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-166 |
3.73e-23 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 92.64 E-value: 3.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGeIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaiMRKGLAIS 81
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK--LRRRIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLEnlqmggfFLN-------------REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRAL 148
Cdd:cd03264 78 PQEFGVYPNFTVRE-------FLDyiawlkgipskevKARVDEVLELV-----NLGDRAKKKIGSLSGGMRRRVGIAQAL 145
|
170
....*....|....*...
gi 648465099 149 MSKPRMLLLDEPTLGLAP 166
Cdd:cd03264 146 VGDPSILIVDEPTAGLDP 163
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-212 |
5.05e-23 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 92.63 E-value: 5.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKG 77
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAISPEGRRVFPDLNVLENLQMGGFFLN------REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSK 151
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGasgddiRRRVSAALDKV-----GLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 152 PRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANkalQIADRGY---VLETGRIV 212
Cdd:PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG---LISRRSYrmlTLSDGHLH 216
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
11-225 |
5.21e-23 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 93.30 E-value: 5.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVR-TGSIHFMGEDISELPTHAI-MRKGLAISPEG 84
Cdd:PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRmndlNPEVTiTGSIVYNGHNIYSPRTDTVdLRKEIGMVFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 RRVFPdLNVLENLqMGGFFLNREEIEAGLEHVFE-------LFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK14239 95 PNPFP-MSIYENV-VYGLRLKGIKDKQVLDEAVEkslkgasIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADR-GYVLEtGRIVLHDTGANLLLNDQ 225
Cdd:PRK14239 173 DEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRtGFFLD-GDLIEYNDTKQMFMNPK 239
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-212 |
5.74e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 94.73 E-value: 5.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG---NPRVRTGSIHFMGEDISELPTHAIMR---KGLAIspegr 85
Cdd:COG0444 16 GVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLKLSEKELRKirgREIQM----- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 rVFPD----LN--------VLENLQMGGFfLNREEIEaglEHVFELF-----PRLRERATQRSGLMSGGEQQMLAIGRAL 148
Cdd:COG0444 91 -IFQDpmtsLNpvmtvgdqIAEPLRIHGG-LSKAEAR---ERAIELLervglPDPERRLDRYPHELSGGMRQRVMIARAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 149 MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG0444 166 ALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGRIV 230
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
11-186 |
7.38e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 96.35 E-value: 7.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISE-------LPTHAIMRKGLaispe 83
Cdd:NF033858 11 YGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADarhrravCPRIAYMPQGL----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 84 GRRVFPDLNVLENLQmggFF-----LNREEIEAglehvfelfpRLRE--RATqrsGL----------MSGGEQQMLAIGR 146
Cdd:NF033858 86 GKNLYPTLSVFENLD---FFgrlfgQDAAERRR----------RIDEllRAT---GLapfadrpagkLSGGMKQKLGLCC 149
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD--GITV 186
Cdd:NF033858 150 ALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSV 191
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-224 |
4.30e-22 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 93.84 E-value: 4.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRT--GSIHFMGEdisELPTHAIM---R 75
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGE---ELQASNIRdteR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KGLAISPEGRRVFPDLNVLENLqmggfFLNREEIEAGLEHVFELFPR----LRE-----RATQRSGLMSGGEQQMLAIGR 146
Cdd:PRK13549 82 AGIAIIHQELALVKELSVLENI-----FLGNEITPGGIMDYDAMYLRaqklLAQlkldiNPATPVGNLGLGQQQLVEIAK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLND 224
Cdd:PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-212 |
4.80e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 89.96 E-value: 4.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPtHAIMRKGLAISPEGRRVFPDlNV 93
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADLRRNIGYVPQDVTLFYG-TL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQMGGFFLNREEIEAGLE------------HVFELfpRLRERAtqrSGLmSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:cd03245 95 RDNITLGAPLADDERILRAAElagvtdfvnkhpNGLDL--QIGERG---RGL-SGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDDGITVFLVEQNAnkALQIADRGYVLETGRIV 212
Cdd:cd03245 169 SAMDMNSEERLKERLRQLLGDKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
12-223 |
5.52e-22 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 91.17 E-value: 5.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHA---IMRKGLAISPEGRRVF 88
Cdd:cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKElreLRRKKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLEN----LQMGGffLNREEIEAGLEHVFELFPrLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03294 115 PHRTVLENvafgLEVQG--VPRAEREERAAEALELVG-LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 165 APLI-IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLN 223
Cdd:cd03294 192 DPLIrREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-211 |
5.54e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 92.45 E-value: 5.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELptHAIMRK-GLAI 80
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL--HARDRKvGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 spEGRRVFPDLNVLENLQMGGFFL------NREEIEAGLEHVFEL--FPRLRER-ATQrsglMSGGEQQMLAIGRALMSK 151
Cdd:PRK10851 81 --QHYALFRHMTVFDNIAFGLTVLprrerpNAAAIKAKVTQLLEMvqLAHLADRyPAQ----LSGGQKQRVALARALAVE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 152 PRMLLLDEPTLGLAPLI-------IEQIFEIIKtirddgITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK10851 155 PQILLLDEPFGALDAQVrkelrrwLRQLHEELK------FTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-212 |
5.64e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 93.70 E-value: 5.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpTHAIMRK-GLA 79
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL-DHKLAAQlGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFPDLNVLENLqmggfFLNREEIEAGLEHVFELFPRLRERA---TQRSGL----------MSGGEQQMLAIGR 146
Cdd:PRK09700 84 IIYQELSVIDELTVLENL-----YIGRHLTKKVCGVNIIDWREMRVRAammLLRVGLkvdldekvanLSISHKQMLEIAK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
9-212 |
1.07e-21 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 88.85 E-value: 1.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 9 SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthAIMRKGLAISPE--GRR 86
Cdd:cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KERRKSIGYVMQdvDYQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 VFPDlNVLENLqmggfFLNREEIEAGLEHV------FELFpRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:cd03226 84 LFTD-SVREEL-----LLGLKELDAGNEQAetvlkdLDLY-ALKERHPLS---LSGGQKQRLAIAAALLSGKDLLIFDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-209 |
1.36e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 89.06 E-value: 1.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL-PTHAIMRKGLAIspegrrvFPDLNVLE 95
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPgPDRMVVFQNYSL-------LPWLTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMG----GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQ 171
Cdd:TIGR01184 74 NIALAvdrvLPDLSKSERRAIVEEHIALV-GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 648465099 172 IFE-IIKTIRDDGITVFLVEQNANKALQIADRGYVLETG 209
Cdd:TIGR01184 153 LQEeLMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
4-228 |
1.47e-21 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 91.63 E-value: 1.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 4 LDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPThaiMRKGLAISPE 83
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 84 GRRVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFELF--PRLRERatqRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK11000 83 SYALYPHLSVAENmsfgLKLAG--AKKEEINQRVNQVAEVLqlAHLLDR---KPKALSGGQRQRVAIGRTLVAEPSVFLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 158 DEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVlhdtganlllndQVGK 228
Cdd:PRK11000 158 DEPLSNLdAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA------------QVGK 217
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-189 |
1.98e-21 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 92.04 E-value: 1.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAI 80
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV-RRRVSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFpDLNVLENLQMGGFFLNREEIEAGLE------HVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRM 154
Cdd:TIGR02868 414 CAQDAHLF-DTTVRENLRLARPDATDEELWAALErvgladWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 492
|
170 180 190
....*....|....*....|....*....|....*
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIrDDGITVFLV 189
Cdd:TIGR02868 493 LLLDEPTEHLDAETADELLEDLLAA-LSGRTVVLI 526
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-212 |
2.36e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 91.05 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimRKGLAI 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---QRPINM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMG--GFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:PRK11607 96 MFQSYALFPHMTVEQNIAFGlkQDKLPKAEIASRVNEMLGLV-HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 159 EPTLGLAPLIIEQI-FEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11607 175 EPMGALDKKLRDRMqLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-212 |
2.57e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 88.82 E-value: 2.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLST------ICGNPRVRtGSIHFMGEDISELPThAIMRKGLAISPEG 84
Cdd:PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrlieLYPEARVS-GEVYLDGQDIFKMDV-IELRRRVQMVFQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 RRVFPDLNVLENLQMGgFFLNR-----EEIEAGLEHVFE---LFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK14247 91 PNPIPNLSIFENVALG-LKLNRlvkskKELQERVRWALEkaqLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK14247 170 ADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIV 224
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
2-212 |
4.93e-21 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 87.16 E-value: 4.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAiQALHdVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPthaIMRKGLAIS 81
Cdd:cd03298 1 VRLDKIRFSYGE-QPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP---PADRPVSML 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMG---GFFLN---REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRML 155
Cdd:cd03298 76 FQENNLFAHLTVEQNVGLGlspGLKLTaedRQAIEVALARV-----GLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 156 LLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03298 151 LLDEPFAALDPALRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
17-202 |
4.94e-21 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 87.95 E-value: 4.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHA---IMRKGLAISPEGRRVFPDLNV 93
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAkaeLRNQKLGFIYQFHHLLPDFTA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQM----GGffLNREEIEaglEHVFELFPR--LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK11629 105 LENVAMplliGK--KKPAEIN---SRALEMLAAvgLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
|
170 180 190
....*....|....*....|....*....|....*
gi 648465099 168 IIEQIFEIIKTIRDDGITVFLVeqnANKALQIADR 202
Cdd:PRK11629 180 NADSIFQLLGELNRLQGTAFLV---VTHDLQLAKR 211
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-209 |
5.07e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 87.67 E-value: 5.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPtHAIMRKGLAISPEGRRVFPDlNV 93
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKSLRSMIGVVLQDTFLFSG-TI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQMGGFFLNREEI-----EAGLEHVFELFPR-LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:cd03254 94 MENIRLGRPNATDEEVieaakEAGAHDFIMKLPNgYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 168 IIEQIFEIIKTIRdDGITVFLVE------QNANKALQIaDRGYVLETG 209
Cdd:cd03254 174 TEKLIQEALEKLM-KGRTSIIIAhrlstiKNADKILVL-DDGKIIEEG 219
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
12-212 |
5.76e-21 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 90.99 E-value: 5.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAISPEGRRVFpDL 91
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQ-IGVVPQDTFLF-SG 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIE-----AGLEHVFELFPR-LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:COG1132 429 TIRENIRYGRPDATDEEVEeaakaAQAHEFIEALPDgYDTVVGERGVNLSGGQRQRIAIARALLKDPPILILDEATSALD 508
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 166 PLIIEQIFEIIKTIRdDGITVFLVeqnANK--ALQIADRGYVLETGRIV 212
Cdd:COG1132 509 TETEALIQEALERLM-KGRTTIVI---AHRlsTIRNADRILVLDDGRIV 553
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-189 |
9.25e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 86.13 E-value: 9.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGED-ISELPTHAimrkglaispEGRRVF 88
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGArVAYVPQRS----------EVPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PdLNVLENLQMGGF----------FLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:NF040873 71 P-LTVRDLVAMGRWarrglwrrltRDDRAAVDDALERV-----GLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190
....*....|....*....|....*....|.
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLV 189
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVV 175
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-231 |
1.28e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 86.56 E-value: 1.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYgaiQALH-DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDiselptHAimrkglA 79
Cdd:PRK10771 1 MLKLTDITWLY---HHLPmRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HT------T 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRV---------FPDLNVLENLQMG---GFFLN---REEIEAGLEHVF--ELFPRLreratqrSGLMSGGEQQML 142
Cdd:PRK10771 66 TPPSRRPVsmlfqennlFSHLTVAQNIGLGlnpGLKLNaaqREKLHAIARQMGieDLLARL-------PGQLSGGQRQRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVlHDTGANLL 221
Cdd:PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDEL 217
|
250
....*....|
gi 648465099 222 LNDQVGKAYL 231
Cdd:PRK10771 218 LSGKASASAL 227
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-211 |
1.43e-20 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 89.72 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRRV---FPDLNVLE 95
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSsglYLDAPLAW 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NL------QMgGFFLNREEIEAglehVFELFPRLR----ERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:PRK15439 361 NVcalthnRR-GFWIKPARENA----VLERYRRALnikfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 166 PLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK15439 436 VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-213 |
1.77e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 86.66 E-value: 1.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprvrtgsihfmgediSELPTHAIMRKGLAIS 81
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG----------------LETPSAGELLAGTAPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGR----------RVFPDLNVLENLQMGGFFLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSK 151
Cdd:PRK11247 77 AEARedtrlmfqdaRLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----GLADRANEWPAALSGGQKQRVALARALIHR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 152 PRMLLLDEPTLGLAPLI-IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:PRK11247 152 PGLLLLDEPLGALDALTrIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
16-221 |
1.80e-20 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 86.13 E-value: 1.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnPR---VRTGSIHFMGEDISELpTHAIMRKGLAISPEGRRVFPDlN 92
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLI---PRfydVDSGRILIDGHDVRDY-TLASLRRQIGLVSQDVFLFND-T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 VLENLQMGGFFLNREEIEAGLE--HVFELFPRLRE----RATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL-- 164
Cdd:cd03251 92 VAENIAYGRPGATREEVEEAARaaNAHEFIMELPEgydtVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALdt 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 165 --APLIIEQIFEIIKtirddGITVFLVeqnANKALQI--ADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03251 172 esERLVQAALERLMK-----NRTTFVI---AHRLSTIenADRIVVLEDGKIVERGTHEELL 224
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-230 |
2.25e-20 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 86.61 E-value: 2.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprVRTGSIhfMGEDISELPTHAIMRKG-LA 79
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG---LITGDK--SAGSHIELLGRTVQREGrLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRR-----VFPDLN------VLENLQMGGF-----------FLNREEIEAGLEHVFELfpRLRERATQRSGLMSGG 137
Cdd:PRK09984 79 RDIRKSRantgyIFQQFNlvnrlsVLENVLIGALgstpfwrtcfsWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 138 EQQMLAIGRALMSKPRMLLLDEPTLGLAPliiEQIFEIIKTIRD----DGITVFLVEQNANKALQIADRGYVLETGRiVL 213
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDP---ESARIVMDTLRDinqnDGITVVVTLHQVDYALRYCERIVALRQGH-VF 232
|
250
....*....|....*..
gi 648465099 214 HDTGANLLLNDQVGKAY 230
Cdd:PRK09984 233 YDGSSQQFDNERFDHLY 249
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
11-212 |
4.06e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 85.46 E-value: 4.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAIspeGRR--VF 88
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF---GQKtqLW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLEnlqmgGFFLNReeieagleHVFELFP-RLRERATQRSGLMSGGE------------QQMLA-IGRALMSKPRM 154
Cdd:cd03267 108 WDLPVID-----SFYLLA--------AIYDLPPaRFKKRLDELSELLDLEElldtpvrqlslgQRMRAeIAAALLHEPEI 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03267 175 LFLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
4-202 |
4.98e-20 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 84.59 E-value: 4.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 4 LDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGED---ISELPTHAIMRKGLAI 80
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQEtppLNSKKASKFRREKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFFLN------REEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRM 154
Cdd:TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKlskkekREKKKEALEKV-----GLNLKLKQKIYELSGGEQQRVALARAILKPPPL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKAlQIADR 202
Cdd:TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADR 202
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
15-212 |
6.64e-20 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 85.19 E-value: 6.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTI--CGNP---RVRTGSIHFMGEDISELPTHAI--MRKGLAISPEGRRV 87
Cdd:PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlLEQPeagTIRVGDITIDTARSLSQQKGLIrqLRQHVGFVFQNFNL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 FPDLNVLENLQMGGFFLNREEIEAGLEHVFELFPRL----RERATQRSglMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVglagKETSYPRR--LSGGQQQRVAIARALAMRPEVILFDEPTSA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11264 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-213 |
1.19e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 87.03 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL-PTHAiMRKGLA 79
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLtPAKA-HQLGIY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFPDLNVLENLQMGgffLNREEieAGLEHVFELfprLRERATQRSGLMSGG-----EQQMLAIGRALMSKPRM 154
Cdd:PRK15439 90 LVPQEPLLFPNLSVKENILFG---LPKRQ--ASMQKMKQL---LAALGCQLDLDSSAGslevaDRQIVEILRGLMRDSRI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-212 |
2.14e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 83.74 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLST----ICGNPRVRT-GSIHFMGEDISELPTHAI-MRKGLAISPEG 84
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTfnrlLELNEEARVeGEVRLFGRNIYSPDVDPIeVRREVGMVFQY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 RRVFPDLNVLENLQMG----GFFLNREEIEAGLEHVFE---LFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK14267 94 PNPFPHLTIYDNVAIGvklnGLVKSKKELDERVEWALKkaaLWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK14267 174 DEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-212 |
2.43e-19 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 85.16 E-value: 2.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElptHAIMRKGLAIS 81
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQRDICMV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFEL--FPRLRERATQRsglMSGGEQQMLAIGRALMSKPRML 155
Cdd:PRK11432 84 FQSYALFPHMSLGENvgygLKMLG--VPKEERKQRVKEALELvdLAGFEDRYVDQ---ISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 156 LLDEPTLGL-APL---IIEQIFEIIKTIrddGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11432 159 LFDEPLSNLdANLrrsMREKIRELQQQF---NITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
6-212 |
5.65e-19 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 85.16 E-value: 5.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIM---RKGLAISP 82
Cdd:PRK10535 13 SYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAqlrREHFGFIF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 83 EGRRVFPDLNVLENLQMGGFFLNREEiEAGLEHVFELFPRL--RERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK10535 93 QRYHLLSHLTAAQNVEVPAVYAGLER-KQRLLRAQELLQRLglEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:PRK10535 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-212 |
8.25e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 82.37 E-value: 8.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLA- 79
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR-LAl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 -----ISPEGRRVfpdlnvlenlqmggfflnREEIEAGLEHVFELFPRLR-------ERATQRSGL----------MSGG 137
Cdd:PRK11231 81 lpqhhLTPEGITV------------------RELVAYGRSPWLSLWGRLSaednarvNQAMEQTRInhladrrltdLSGG 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 138 EQQMLAIGRALMSKPRMLLLDEPTLGLAplIIEQIfEIIKTIR---DDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQV-ELMRLMRelnTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
16-213 |
8.46e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 82.79 E-value: 8.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaimrKGLAISPEGRRV-----FPD 90
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD--------KKVKLSDIRKKVglvfqYPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLE------------NLQmggffLNREEIEAGLEHVFELFPRLRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK13637 94 YQLFEetiekdiafgpiNLG-----LSEEEIENRVKRAMNIVGLDYEDYKDKSPFeLSGGQKRRVAIAGVVAMEPKILIL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
15-213 |
8.61e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 80.43 E-value: 8.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELptHAIMRKGLAISPEGRRVFpDLNVL 94
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLISVLNQRPYLF-DTTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLqmGGFFlnreeieaglehvfelfprlreratqrsglmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL----IIE 170
Cdd:cd03247 93 NNL--GRRF-------------------------------SGGERQRLALARILLQDAPIVLLDEPTVGLDPIterqLLS 139
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 648465099 171 QIFEIIKtirddGITVFLVEQNAnKALQIADRGYVLETGRIVL 213
Cdd:cd03247 140 LIFEVLK-----DKTLIWITHHL-TGIEHMDKILFLENGKIIM 176
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-211 |
1.07e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 84.28 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR---VFPDLNV 93
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQM--------GGFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:PRK10762 348 KENMSLtalryfsrAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 166 PLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
15-221 |
1.49e-18 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 81.12 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFPDlNVL 94
Cdd:cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS-LRRAIGVVPQDTVLFND-TIG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLQMGGFFLNREEIE-----AGLEHVFELFP-----RLRERatqrsGLM-SGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:cd03253 93 YNIRYGRPDATDEEVIeaakaAQIHDKIMRFPdgydtIVGER-----GLKlSGGEKQRVAIARAILKNPPILLLDEATSA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 164 LaPLIIEQifEIIKTIRD--DGITVFLVEQNANKALQiADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03253 168 L-DTHTER--EIQAALRDvsKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
17-212 |
1.62e-18 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 81.27 E-value: 1.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP--RVRTGSIHFMGEDISELPTHAIMRKGLAIS----PEgrrvFPD 90
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELSPDERARAGIFLAfqypVE----IPG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLEnlqmggfFLnREEIEAGLE---HVFELFPRLRERAT---------QRS---GLmSGGEQ------QMLAIgralm 149
Cdd:COG0396 92 VSVSN-------FL-RTALNARRGeelSAREFLKLLKEKMKelgldedflDRYvneGF-SGGEKkrneilQMLLL----- 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 150 sKPRMLLLDEPTLGL---ApliIEQIFEIIKTIRDDGITVFLVEQNaNKALQI--ADRGYVLETGRIV 212
Cdd:COG0396 158 -EPKLAILDETDSGLdidA---LRIVAEGVNKLRSPDRGILIITHY-QRILDYikPDFVHVLVDGRIV 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
19-211 |
1.93e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 83.30 E-value: 1.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR---VFPDLNVLE 95
Cdd:PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNFSIAQ 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLNreeieAGLEHVFELFPRLRERAT---QRSGL-------------MSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK09700 361 NMAISRSLKD-----GGYKGAMGLFHEVDEQRTaenQRELLalkchsvnqniteLSGGNQQKVLISKWLCCCPEVIIFDE 435
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
6-212 |
2.96e-18 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 81.00 E-value: 2.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpthaimrkglaiSPEGR 85
Cdd:TIGR02769 16 GLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL------------DRKQR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 R--------VFPDLNVLENLQMGGfflnREEIEAGLEHVFELFPRLRERATQ--------RSGLM-------SGGEQQML 142
Cdd:TIGR02769 84 RafrrdvqlVFQDSPSAVNPRMTV----RQIIGEPLRHLTSLDESEQKARIAelldmvglRSEDAdklprqlSGGQLQRI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQ-IADRGYVLETGRIV 212
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQsFCQRVAVMDKGQIV 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-200 |
3.79e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 80.51 E-value: 3.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElPThaiMRKGLAI 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-PG---AERGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGrrVFPDLNVLEN----LQMGGffLNREEIEAGLEHVFELFPrLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK11248 77 QNEG--LLPWRNVQDNvafgLQLAG--VEKMQRLEIAHQMLKKVG-LEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIA 200
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMA 196
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
14-161 |
4.78e-18 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 79.79 E-value: 4.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGE----DISELPTHAI--MRKG--------LA 79
Cdd:COG4778 24 LPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQASPREIlaLRRRtigyvsqfLR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPegrRVfPDLNVLEN--LQMGgfflnrEEIEAGLEHVFELFPRLR--ER------ATqrsglMSGGEQQMLAIGRALM 149
Cdd:COG4778 104 VIP---RV-SALDVVAEplLERG------VDREEARARARELLARLNlpERlwdlppAT-----FSGGEQQRVNIARGFI 168
|
170
....*....|..
gi 648465099 150 SKPRMLLLDEPT 161
Cdd:COG4778 169 ADPPLLLLDEPT 180
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-212 |
5.50e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 80.55 E-value: 5.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYG-----AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFmgEDISELPThaimR 75
Cdd:PRK13643 1 MIKFEKVNYTYQpnspfASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV--GDIVVSST----S 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KGLAISPEGRRV-----FPDLN-----VLENLQMG--GFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLA 143
Cdd:PRK13643 75 KQKEIKPVRKKVgvvfqFPESQlfeetVLKDVAFGpqNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
17-212 |
5.62e-18 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 79.61 E-value: 5.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVR--TGSIHFMGEDISELPTHAIMRKGLAISPEGRRVFPDLNVL 94
Cdd:TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEvtSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLQMGGFFLNREEIEAGLEhVFELFPRLRER--ATQRSGLM---------SGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:TIGR01978 96 EFLRSALNARRSARGEEPLD-LLDFEKLLKEKlaLLDMDEEFlnrsvnegfSGGEKKRNEILQMALLEPKLAILDEIDSG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIA-DRGYVLETGRIV 212
Cdd:TIGR01978 175 LDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKpDYVHVLLDGRIV 224
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-188 |
5.74e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 78.84 E-value: 5.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpTHAIMRKGLAI 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK--DLCTYQKQLCF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQmggFFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK13540 79 VGHRSGINPYLTLRENCL---YDIHFSPGAVGITELCRLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154
|
170 180
....*....|....*....|....*...
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFL 188
Cdd:PRK13540 155 LVALDELSLLTIITKIQEHRAKGGAVLL 182
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-201 |
6.25e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 80.08 E-value: 6.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTL------STICGNPRVRtGSIHFMGEDISELPTHA-IM 74
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLkclnrmNELESEVRVE-GRVEFFNQNIYERRVNLnRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RKGLAISPEGRRVFPdLNVLENLQMGGFFLN---REEIEAGLEHVF---ELFPRLRERATQRSGLMSGGEQQMLAIGRAL 148
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwrpKLEIDDIVESALkdaDLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 149 MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIR-DDGITVFLVEQNANKALQIAD 201
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQVSRLSD 219
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-161 |
6.68e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 81.65 E-value: 6.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFmGE--DISELPTHaimRKGL 78
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GEtvKIGYFDQH---QEEL 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AispegrrvfPDLNVLENLQMGGFFLNREEIEAGLEHvFeLFPrlRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:COG0488 391 D---------PDKTVLDELRDGAPGGTEQEVRGYLGR-F-LFS--GDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLD 457
|
...
gi 648465099 159 EPT 161
Cdd:COG0488 458 EPT 460
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-212 |
7.47e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 80.14 E-value: 7.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-NPRVR----TGSIHFMGEDISELPTHAIMRKGLAISPEG 84
Cdd:PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRmNDKVSgyrySGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 RRVFPdLNVLENLQMG---GFFLNREEI----EAGLEHVfELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK14271 110 PNPFP-MSIMDNVLAGvraHKLVPRKEFrgvaQARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 158 DEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK14271 188 DEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLV 241
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
15-226 |
1.04e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 79.39 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAISPEGRRVFPDlNV 93
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKvGLVFQDPDDQVFSS-TV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQMG--GFFLNREEIEAGLEHVFEL--FPRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLII 169
Cdd:PRK13647 98 WDDVAFGpvNMGLDKDEVERRVEEALKAvrMWDFRDKPPYH---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 170 EQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRiVLHDTGANLLLNDQV 226
Cdd:PRK13647 175 ETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR-VLAEGDKSLLTDEDI 230
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
15-231 |
1.12e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 79.87 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-----GLAISPEGRRVFP 89
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKlrkkvSLVFQFPEAQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DlNVLENLQMGGFFLNREEIEAGlEHVFELFPR--LRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:PRK13641 101 N-TVLKDVEFGPKNFGFSEDEAK-EKALKWLKKvgLSEDLISKSPFeLSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 167 LIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLN-DQVGKAYL 231
Cdd:PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDkEWLKKHYL 244
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
12-189 |
1.48e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 80.79 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFPDl 91
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS-WRDQIAWVPQHPFLFAG- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIE-----AGLEHVFELFPRLRERATQRSGLM-SGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:TIGR02857 411 TIAENIRLARPDASDAEIRealerAGLDEFVAALPQGLDTPIGEGGAGlSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
|
170 180
....*....|....*....|....*.
gi 648465099 166 PlIIEQifEIIKTIRD--DGITVFLV 189
Cdd:TIGR02857 491 A-ETEA--EVLEALRAlaQGRTVLLV 513
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-221 |
1.51e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 79.26 E-value: 1.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLA 79
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 I---SPE----GRRVFPDLNV-LENLQMGGF----FLNREEIEAGLEhvfelfpRLRERATQRsglMSGGEQQMLAIGRA 147
Cdd:PRK13644 81 IvfqNPEtqfvGRTVEEDLAFgPENLCLPPIeirkRVDRALAEIGLE-------KYRHRSPKT---LSGGQGQCVALAGI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 148 LMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKaLQIADRGYVLETGRIVLHDTGANLL 221
Cdd:PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVL 223
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
15-220 |
2.35e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 78.67 E-value: 2.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIhfmgeDISELPTHAiMRKGLAISPEGRRV-----FP 89
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-----TVDDITITH-KTKDKYIRPVRKRIgmvfqFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLEN-----LQMG--GFFLNREEIEaglEHVFELFPRL---RERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK13646 95 ESQLFEDtvereIIFGpkNFKMNLDEVK---NYAHRLLMDLgfsRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 160 PTLGLAPLIIEQIFEIIKTIR-DDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANL 220
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
19-224 |
3.06e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 78.27 E-value: 3.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKGLAISPEGRRVFPDLNVLEN 96
Cdd:PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLytVRKRMSMLFQSGALFTDMNVFDN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 L--------QMGGFFLnREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI 168
Cdd:PRK11831 105 VayplrehtQLPAPLL-HSTVMMKLEAV-----GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 169 IEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLND 224
Cdd:PRK11831 179 MGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
6-212 |
3.38e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 79.73 E-value: 3.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKT-TTLSTI---CGNPRVRTGSIHFMGEDISELPTHAiMRK--GLA 79
Cdd:COG4172 15 AFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILrllPDPAAHPSGSILFDGQDLLGLSERE-LRRirGNR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISpegrRVFPD----LN-----------VLEnLQMGgffLNREEIEAgleHVFELF-----PRLRERATQRSGLMSGGEQ 139
Cdd:COG4172 94 IA----MIFQEpmtsLNplhtigkqiaeVLR-LHRG---LSGAAARA---RALELLervgiPDPERRLDAYPHQLSGGQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 140 Q--MLAIgrALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG4172 163 QrvMIAM--ALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHDLGVVRRFADRVAVMRQGEIV 236
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-212 |
3.90e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 78.59 E-value: 3.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG--NPrvrT-GSIHFMGEDISELpthaimRKGLAispegRR---V 87
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGilVP---TsGEVRVLGYVPFKR------RKEFA-----RRigvV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 F-------PDLNVLENLQmggffLNRE-------EIEAGLEHVFELFpRLRERATQRSGLMSGGeQQMLA-IGRALMSKP 152
Cdd:COG4586 101 FgqrsqlwWDLPAIDSFR-----LLKAiyripdaEYKKRLDELVELL-DLGELLDTPVRQLSLG-QRMRCeLAAALLHRP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFL-------VEqnankalQIADRGYVLETGRIV 212
Cdd:COG4586 174 KILFLDEPTIGLDVVSKEAIREFLKEYnRERGTTILLtshdmddIE-------ALCDRVIVIDHGRII 234
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
15-212 |
3.97e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 77.81 E-value: 3.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI-MRKGLAI---SPEGRRVFPd 90
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLeVRKTVGIvfqNPDDQLFAP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 lNVLENLQMG--GFFLNREEIEAglehvfelfpRLRErATQRSGL----------MSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:PRK13639 95 -TVEEDVAFGplNLGLSKEEVEK----------RVKE-ALKAVGMegfenkpphhLSGGQKKRVAIAGILAMKPEIIVLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK13639 163 EPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
26-230 |
4.28e-17 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 80.06 E-value: 4.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 26 EGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIsELPTHAImRKGLAISPEGRRVFPDLNVLENLQMGGFFLN 105
Cdd:TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAV-RQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 106 REEIEAGLEHVFELFPR-LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRdDGI 184
Cdd:TIGR01257 1033 RSWEEAQLEMEAMLEDTgLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGR 1111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 185 TVFLVEQNANKALQIADRGYVLETGRivLHDTGANLLLNDQVGKAY 230
Cdd:TIGR01257 1112 TIIMSTHHMDEADLLGDRIAIISQGR--LYCSGTPLFLKNCFGTGF 1155
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
17-214 |
5.45e-17 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 76.05 E-value: 5.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG---NPRVrTGSIHFMGEDISElpthAIMRKGLAISPEGRRVFPDLNV 93
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrtGLGV-SGEVLINGRPLDK----RSFRKIIGYVPQDDILHPTLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQMggfflnreeieaglehvfelfprlrerATQRSGLmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIF 173
Cdd:cd03213 100 RETLMF---------------------------AAKLRGL-SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM 151
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648465099 174 EIIKTIRDDGITV-FLVEQNANKALQIADRGYVLETGRIVLH 214
Cdd:cd03213 152 SLLRRLADTGRTIiCSIHQPSSEIFELFDKLLLLSQGRVIYF 193
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
14-221 |
6.62e-17 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 76.81 E-value: 6.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnPR---VRTGSIHFMGEDISELPTHAIMRK-GLaISPEgrrvfP 89
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL---ERfydPTSGEILLDGVDIRDLNLRWLRSQiGL-VSQE-----P 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DL---NVLENLQMGGFFLNREEIE-----AGLEHVFELFP-RLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:cd03249 87 VLfdgTIAENIRYGKPDATDEEVEeaakkANIHDFIMSLPdGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 161 TLGL----APLIIEQIFEIIKtirddGITVFLVeqnANK--ALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03249 167 TSALdaesEKLVQEALDRAMK-----GRTTIVI---AHRlsTIRNADLIAVLQNGQVVEQGTHDELM 225
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
18-212 |
6.67e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.80 E-value: 6.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 18 HDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIS-ELPTHAImRKGLAISPEGRR---VFPDLNV 93
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAI-RAGIMLCPEDRKaegIIPVHSV 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQM--------GGFFLN-REEIEAGLEHVFELFPRLRERAtQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:PRK11288 349 ADNINIsarrhhlrAGCLINnRWEAENADRFIRSLNIKTPSRE-QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 165 APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-226 |
7.20e-17 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 76.89 E-value: 7.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI------- 73
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALseaerrr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 74 -MR-----------KGL--AISPEGrrvfpdlNVLENL------------QMGGFFLNREEIEAGlehvfelfpRLRERA 127
Cdd:PRK11701 86 lLRtewgfvhqhprDGLrmQVSAGG-------NIGERLmavgarhygdirATAGDWLERVEIDAA---------RIDDLP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 128 TQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKT-IRDDGITVFLVEQNANKALQIADRGYVL 206
Cdd:PRK11701 150 TT----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlVRELGLAVVIVTHDLAVARLLAHRLLVM 225
|
250 260
....*....|....*....|
gi 648465099 207 ETGRIVlhDTGanllLNDQV 226
Cdd:PRK11701 226 KQGRVV--ESG----LTDQV 239
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
14-211 |
7.20e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 78.71 E-value: 7.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN-PRVRTGSIHFMGEDIS-ELPTHAImRKGLAISPEGRR---VF 88
Cdd:TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVDiRNPAQAI-RAGIAMVPEDRKrhgIV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLENLQMGGF----FLNREEIEAGLEHVFELFPRLRERATQRS---GLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:TIGR02633 352 PILGVGKNITLSVLksfcFKMRIDAAAELQIIGSAIQRLKVKTASPFlpiGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:TIGR02633 432 RGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
15-212 |
8.20e-17 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 76.16 E-value: 8.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnpRVR-----TGSIHFMGEDISElpthAIMRKGLAISPEGRRVFP 89
Cdd:cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEgggttSGQILFNGQPRKP----DQFQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMGGFFLNREEIEAGLEHVFELFPRLRERATQRSGLM-----SGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03234 95 GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 165 APLIIEQIFEIIKTIRDDGITVFL-VEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03234 175 DSFTALNLVSTLSQLARRNRIVILtIHQPRSDLFRLFDRILLLSSGEIV 223
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-209 |
1.42e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 78.12 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAI 80
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLENLQMGGFFLNR----------EEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMS 150
Cdd:PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRfgridwkkmyAEADKLLARL-----NLRFSSDKLVGELSIGEQQMVEIAKVLSF 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 151 KPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETG 209
Cdd:PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
15-212 |
1.70e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 76.21 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAI-SPE----GRRVF 88
Cdd:PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQvGMVFqNPDnqfvGATVQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNV-LENLQMggfflNREE----IEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:PRK13635 101 DDVAFgLENIGV-----PREEmverVDQALRQV-----GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 164 LAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:PRK13635 171 LDPRGRREVLETVRQLKEQkGITVLSITHDLDEAAQ-ADRVIVMNKGEIL 219
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-211 |
1.80e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 75.78 E-value: 1.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTH---------- 71
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKdgqlkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 72 --AIMRKGLAISPEGRRVFPDLNVLENLQMGGF-FLNREEIEAGLEHVFELFP-RLRERATQRSGL-MSGGEQQMLAIGR 146
Cdd:PRK10619 86 qlRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIqVLGLSKQEARERAVKYLAKvGIDERAQGKYPVhLSGGQQQRVSIAR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
14-211 |
2.89e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 76.89 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN-PRVRTGSIHFMGEDIS-ELPTHAImRKGLAISPEGRR---VF 88
Cdd:PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVKiRNPQQAI-AQGIAMVPEDRKrdgIV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNVLENLQMGGF--FLNREEIEAGLE--HVFELFPRLRERAT---QRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:PRK13549 354 PVMGVGKNITLAALdrFTGGSRIDDAAElkTILESIQRLKVKTAspeLAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 162 LGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK13549 434 RGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
15-212 |
3.37e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 76.92 E-value: 3.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnPRV---RTGSIHFMGEDISELpTHAIMRKGLAIspegrrVFPD- 90
Cdd:PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL---QRVfdpQSGRILIDGTDIRTV-TRASLRRNIAV------VFQDa 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 --LN--VLENLQMGGFFLNREEIEAGLE----HVFELFP--RLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK13657 419 glFNrsIEDNIRVGRPDATDEEMRAAAEraqaHDFIERKpdGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRdDGITVFLVeqnANKALQI--ADRGYVLETGRIV 212
Cdd:PRK13657 499 TSALDVETEAKVKAALDELM-KGRTTFII---AHRLSTVrnADRILVFDNGRVV 548
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
6-212 |
3.54e-16 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 77.09 E-value: 3.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAiQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaIMRKGLAISPEGR 85
Cdd:TIGR01193 480 SYSYGYGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH-TLRQFINYLPQEP 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 RVFpDLNVLENLQMGGF-FLNREEIEAGLEHV-----FELFPR-LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:TIGR01193 558 YIF-SGSILENLLLGAKeNVSQDEIWAACEIAeikddIENMPLgYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD 636
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDgiTVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:TIGR01193 637 ESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRLSVAKQ-SDKIIVLDHGKII 687
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-201 |
3.64e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 75.20 E-value: 3.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLStiCGN------PRVRT-GSIHFMGEDISELPTHAI- 73
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILR--CFNrlndliPGFRVeGKVTFHGKNLYAPDVDPVe 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 74 MRKGLAISPEGRRVFPDlNVLENLQMG----GFFLNREE-IEAGLEHVfELFPRLRERATQrSGL-MSGGEQQMLAIGRA 147
Cdd:PRK14243 89 VRRRIGMVFQKPNPFPK-SIYDNIAYGarinGYKGDMDElVERSLRQA-ALWDEVKDKLKQ-SGLsLSGGQQQRLCIARA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 148 LMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQIAD 201
Cdd:PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-224 |
5.61e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 76.40 E-value: 5.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGY--GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLA 79
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA-LRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFPDlNVLENLQMGGFFLNREEIEAGLEHVfelfpRLRERATQRSGL----------MSGGEQQMLAIGRALM 149
Cdd:PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQV-----GLEKLLEDDKGLnawlgeggrqLSGGEQRRLGIARALL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 150 SKPRMLLLDEPTLGLAP----LIIEQIFEIIKtirddGITVFLVEQNANkALQIADRGYVLETGRIVLHDTGANLLLND 224
Cdd:PRK11160 492 HDAPLLLLDEPTEGLDAeterQILELLAEHAQ-----NKTVLMITHRLT-GLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
16-212 |
6.52e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 73.68 E-value: 6.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAISPEGRRVFPDlNVLE 95
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL-RSRISIIPQDPVLFSG-TIRS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQmggfFLNR---EEIEAGLE------HVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:cd03244 97 NLD----PFGEysdEELWQALErvglkeFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 167 LIIEQIFEIIKTIRDDgITVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:cd03244 173 ETDALIQKTIREAFKD-CTVLTIAHRLDTIID-SDRILVLDKGRVV 216
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
17-230 |
8.81e-16 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 74.09 E-value: 8.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN------PR-VR-TGSIHFMGEDISELPTHAIMRKGLAISPEGRRVF 88
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDltgggaPRgARvTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PdLNVLENLQMGGFFLNReeiEAGlehvfELFPRLRE---RATQRSG----------LMSGGEQQMLAIGRAL------- 148
Cdd:PRK13547 97 A-FSAREIVLLGRYPHAR---RAG-----ALTHRDGEiawQALALAGatalvgrdvtTLSGGELARVQFARVLaqlwpph 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 149 --MSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQ 225
Cdd:PRK13547 168 daAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAH 247
|
....*
gi 648465099 226 VGKAY 230
Cdd:PRK13547 248 IARCY 252
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
13-224 |
1.11e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 74.35 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 13 AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDI----------SELPTHAI----MRKGL 78
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEknkkktkekeKVLEKLVIqktrFKKIK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AISPEGRRV-----FPDLNVLEN----------LQMGgffLNREEIEAGLEHVFELFPrLRERATQRSGL-MSGGEQQML 142
Cdd:PRK13651 99 KIKEIRRRVgvvfqFAEYQLFEQtiekdiifgpVSMG---VSKEEAKKRAAKYIELVG-LDESYLQRSPFeLSGGQKRRV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 143 AIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVlHDTGANLLL 222
Cdd:PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII-KDGDTYDIL 253
|
..
gi 648465099 223 ND 224
Cdd:PRK13651 254 SD 255
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-216 |
1.12e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 74.11 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYG-AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIsELPTHAIM--RKG 77
Cdd:PRK13636 5 ILKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMklRES 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 LAIspegrrVFPD-------LNVLENLQMG--GFFLNREEIEAGLEHVFEL--FPRLRERATQrsgLMSGGEQQMLAIGR 146
Cdd:PRK13636 84 VGM------VFQDpdnqlfsASVYQDVSFGavNLKLPEDEVRKRVDNALKRtgIEHLKDKPTH---CLSFGQKKRVAIAG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEIIK-TIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVeMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
17-212 |
1.27e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 73.54 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTI-----CGNPRVRT-GSIHFMGEDISELptHAI-MRKGLAISPEGRRVFP 89
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLnrlieIYDSKIKVdGKVLYFGKDIFQI--DAIkLRKEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLEN----LQMGGFFLNREE---IEAGLEHV---FELFPRLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK14246 104 HLSIYDNiaypLKSHGIKEKREIkkiVEECLRKVglwKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648465099 160 PTlGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK14246 180 PT-SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-212 |
1.59e-15 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 74.83 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprVR-----TGSIHFMGE-----DI--SEL 68
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG---VYphgsyEGEILFDGEvcrfkDIrdSEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 69 PTHAIMRKGLAISPEgrrvfpdLNVLENLqmggfFLNREEIEAGL-------EHVFELFPR--LRERATQRSGLMSGGEQ 139
Cdd:NF040905 78 LGIVIIHQELALIPY-------LSIAENI-----FLGNERAKRGVidwnetnRRARELLAKvgLDESPDTLVTDIGVGKQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 140 QMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:NF040905 146 QLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
16-213 |
2.30e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 73.24 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDI---SELPTHAIMRK--GLAISPEGRRVFpD 90
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItstSKNKDIKQIRKkvGLVFQFPESQLF-E 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENLQMG--GFFLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI 168
Cdd:PRK13649 101 ETVLKDVAFGpqNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648465099 169 IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVL 213
Cdd:PRK13649 181 RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
16-220 |
2.35e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.99 E-value: 2.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdiselPTHAIMRKGL-AISPEGRRV---FPDL 91
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ-----PTRQALQKNLvAYVPQSEEVdwsFPVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 nvLENLQMGGFF-----------LNREEIEAGLEHVFELFPRLREratqrSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK15056 97 --VEDVVMMGRYghmgwlrrakkRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRVFLARAIAQQGQVILLDEP 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIAD-----RGYVLETGRIVLHDTGANL 220
Cdd:PRK15056 170 FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDytvmvKGTVLASGPTETTFTAENL 234
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
15-216 |
2.76e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 71.67 E-value: 2.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFpDLNVL 94
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-LRSSLTIIPQDPTLF-SGTIR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLQMGGFFLNREeieaglehvfeLFPRLReraTQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLIIEQIF 173
Cdd:cd03369 100 SNLDPFDEYSDEE-----------IYGALR---VSEGGLnLSQGQRQLLCLARALLKRPRVLVLDEAT---ASIDYATDA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648465099 174 EIIKTIRDD--GITVFLVeqnANKALQIA--DRGYVLETGRIVLHDT 216
Cdd:cd03369 163 LIQKTIREEftNSTILTI---AHRLRTIIdyDKILVMDAGEVKEYDH 206
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-212 |
2.77e-15 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 72.18 E-value: 2.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDiselptHAIMRKGLAISPEgrrvfp 89
Cdd:cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSLLGLGGGFNPE------ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 dLNVLENLQMGGFFLN--REEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEptlGLA-- 165
Cdd:cd03220 99 -LTGRENIYLNGRLLGlsRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE---VLAvg 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 166 -PLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03220 174 dAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
12-226 |
2.85e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 72.91 E-value: 2.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAISPEGRRVFPD 90
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFvGLVFQNPDDQIFSP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 lNVLENLQMG--GFFLNREEIEAGLEHVFELF--PRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:PRK13652 95 -TVEQDIAFGpiNLGLDEETVAHRVSSALHMLglEELRDRVPHH---LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 167 LIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQV 226
Cdd:PRK13652 171 QGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
12-161 |
2.88e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 73.23 E-value: 2.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnprVR-----TGSIHFMGEDISELPTHAI--MRKGLAIspeg 84
Cdd:COG4608 29 GVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLL-----LRleeptSGEILFDGQDITGLSGRELrpLRRRMQM---- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 rrVFPD----LN----VlenlqmggfflnREEIEAGLEhVFELFPR--LRERAT---QRSGLM-----------SGGEQQ 140
Cdd:COG4608 100 --VFQDpyasLNprmtV------------GDIIAEPLR-IHGLASKaeRRERVAellELVGLRpehadryphefSGGQRQ 164
|
170 180
....*....|....*....|.
gi 648465099 141 MLAIGRALMSKPRMLLLDEPT 161
Cdd:COG4608 165 RIGIARALALNPKLIVCDEPV 185
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
11-212 |
5.46e-15 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 72.85 E-value: 5.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAG-----------------KTTTLSTICGNPRVRTGSIHFmgediselptHAI 73
Cdd:NF000106 23 FGEVKAVDGVDLDVREGTVLGVLGP*GAA**rgalpahv*gpdagrRPWRF*TWCANRRALRRTIG*----------HRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 74 MRKGLAISPEGRrvfpdlnvlENLQMGGFFLN--REEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSK 151
Cdd:NF000106 93 VR*GRRESFSGR---------ENLYMIGR*LDlsRKDARARADELLERF-SLTEAAGRAAAKYSGGMRRRLDLAASMIGR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 152 PRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:NF000106 163 PAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVI 223
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-214 |
5.73e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 71.96 E-value: 5.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGE--DISELPTHAiMRKGL 78
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKplDYSKRGLLA-LRQQV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AI---SPEGRRVFPDLNVLENLQMGGFFLNREEIEAGLEHVFELF--PRLRERATQrsgLMSGGEQQMLAIGRALMSKPR 153
Cdd:PRK13638 80 ATvfqDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVdaQHFRHQPIQ---CLSHGQKKRVAIAGALVLQAR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 154 MLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLH 214
Cdd:PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
12-212 |
6.03e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 73.30 E-value: 6.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHF-MGEDISELPTHAIMRKG-----LAISPEGR 85
Cdd:TIGR03269 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrVGDEWVDMTKPGPDGRGrakryIGILHQEY 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 RVFPDLNVLENLQmggfflnrEEIeaGLEHVFELFPRLRERATQRSGL---------------MSGGEQQMLAIGRALMS 150
Cdd:TIGR03269 375 DLYPHRTVLDNLT--------EAI--GLELPDELARMKAVITLKMVGFdeekaeeildkypdeLSEGERHRVALAQVLIK 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 151 KPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:TIGR03269 445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
6-189 |
7.72e-15 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.96 E-value: 7.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL--PTHAIMR-KGLAISP 82
Cdd:PRK10584 15 SVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMdeEARAKLRaKHVGFVF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 83 EGRRVFPDLNVLENLQMGGFfLNREEIEAGLEHVFELFPR--LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:PRK10584 95 QSFMLIPTLNALENVELPAL-LRGESSRQSRNGAKALLEQlgLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP 173
|
170 180 190
....*....|....*....|....*....|
gi 648465099 161 TLGLAPLIIEQIFEIIKTI-RDDGITVFLV 189
Cdd:PRK10584 174 TGNLDRQTGDKIADLLFSLnREHGTTLILV 203
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
15-215 |
9.64e-15 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 72.21 E-value: 9.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDE---GEIVTLI-GSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpthaiMRKGLAISPEGRRV--- 87
Cdd:PRK11144 8 QQLGDLCLTVNLtlpAQGITAIfGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFD------AEKGICLPPEKRRIgyv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 ------FPDLNVLENLQMGGFFLNREEIEA-----GLEHVFELFPrlreratqrsGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK11144 82 fqdarlFPHYKVRGNLRYGMAKSMVAQFDKivallGIEPLLDRYP----------GSLSGGEKQRVAIGRALLTAPELLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 157 LDEPtlgLAPLIIEQIFEII----KTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHD 215
Cdd:PRK11144 152 MDEP---LASLDLPRKRELLpyleRLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
16-212 |
1.00e-14 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 70.98 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISeLPTHAIMRKGLAISPEGRRVFpDLNVLE 95
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA-LADPAWLRRQVGVVLQENVLF-NRSIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLNREEIE--AGLEHVFELFPRLRER-----ATQRSGLmSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLI 168
Cdd:cd03252 95 NIALADPGMSMERVIeaAKLAGAHDFISELPEGydtivGEQGAGL-SGGQRQRIAIARALIHNPRILIFDEAT---SALD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 169 IEQIFEIIKTIRD--DGITVFLVEQNANkALQIADRGYVLETGRIV 212
Cdd:cd03252 171 YESEHAIMRNMHDicAGRTVIIIAHRLS-TVKNADRIIVMEKGRIV 215
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
11-161 |
1.42e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 72.02 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-----------NPRVRTGSI---HFMGEDISEL-------- 68
Cdd:COG0488 8 FGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGelepdsgevsiPKGLRIGYLpqePPLDDDLTVLdtvldgda 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 69 PTHAIMRKGLAISPEGRRVFPDLNVLENLQ-----MGGFFLNR--EEIEAGLEhvfelFPrlRERATQRSGLMSGGEQQM 141
Cdd:COG0488 88 ELRALEAELEELEAKLAEPDEDLERLAELQeefeaLGGWEAEAraEEILSGLG-----FP--EEDLDRPVSELSGGWRRR 160
|
170 180
....*....|....*....|
gi 648465099 142 LAIGRALMSKPRMLLLDEPT 161
Cdd:COG0488 161 VALARALLSEPDLLLLDEPT 180
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-216 |
6.28e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 68.57 E-value: 6.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAI 80
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKR-LAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDLNVLEnLQMGGFF------LN---REEIEAGLEHvFELFPrLRERAtqrsgL--MSGGEQQMLAIGRALM 149
Cdd:COG4604 80 LRQENHINSRLTVRE-LVAFGRFpyskgrLTaedREIIDEAIAY-LDLED-LADRY-----LdeLSGGQRQRAFIAMVLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 150 SKPRMLLLDEPtlgLAPLIIEQIFEIIKTIR----DDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:COG4604 152 QDTDYVLLDEP---LNNLDMKHSVQMMKLLRrladELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGT 219
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
17-161 |
8.56e-14 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 69.84 E-value: 8.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHF-MGEDISELPTHAIMRKG-L--AIS-PEGRRVFPDL 91
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPQRPYLPLGtLreALLyPATAEAFSDA 458
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQmggfflnreeiEAGLEHvfeLFPRLRERAtQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:COG4178 459 ELREALE-----------AVGLGH---LAERLDEEA-DWDQVLSLGEQQRLAFARLLLHKPDWLFLDEAT 513
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-230 |
1.09e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 68.04 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 20 VSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRvRTGSIHFMGEDISELPTH--AIMRKGLAispEGRRVFPDLNVLENL 97
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAelARHRAYLS---QQQTPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 98 QMGGFFLNRE-EIEAGLEHVFELFpRLRERATQRSGLMSGGEQQ-------MLAIGRALMSKPRMLLLDEPTlglAPLII 169
Cdd:PRK03695 91 TLHQPDKTRTeAVASALNEVAEAL-GLDDKLGRSVNQLSGGEWQrvrlaavVLQVWPDINPAGQLLLLDEPM---NSLDV 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 170 EQ---IFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAY 230
Cdd:PRK03695 167 AQqaaLDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
14-221 |
1.11e-13 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 69.75 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnPRV---RTGSIHFMGEDISELpTHAIMRKGLAISPEGRRVFPD 90
Cdd:TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLI---PRFyepDSGQILLDGHDLADY-TLASLRRQVALVSQDVVLFND 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 lNVLENLQMG-GFFLNREEIEAGLE--HVFELFPRLRE----RATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:TIGR02203 421 -TIANNIAYGrTEQADRAEIERALAaaYAQDFVDKLPLgldtPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITvfLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:TIGR02203 500 LDNESERLVQAALERLMQGRTT--LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
12-212 |
1.31e-13 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 68.17 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMrkglAISPEGRRVFPDL 91
Cdd:PRK10419 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRK----AFRRDIQMVFQDS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQmggfFLNREEIEAGLEHVFELFPRLRER---------------ATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK10419 99 ISAVNPR----KTVREIIREPLRHLLSLDKAERLArasemlravdlddsvLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFL-VEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLfITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
14-216 |
1.38e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 68.72 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIH----FMGEDIS-ELPTHAIMRKGLAISPEGRRV- 87
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQvgdiYIGDKKNnHELITNPYSKKIKNFKELRRRv 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 -----FPDLN-----VLENLQMGGFFLNREEIEAGLEHVFELFPR-LRERATQRSGL-MSGGEQQMLAIGRALMSKPRML 155
Cdd:PRK13631 119 smvfqFPEYQlfkdtIEKDIMFGPVALGVKKSEAKKLAKFYLNKMgLDDSYLERSPFgLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 156 LLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
7-212 |
1.45e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 68.99 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 7 INSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR 86
Cdd:PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 VFPDLNVLENLQMG-----GFFLNREEIEAGLEHVFE-----LFPRlreratQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK10982 84 LVLQRSVMDNMWLGryptkGMFVDQDKMYRDTKAIFDeldidIDPR------AKVATLSVSQMQMIEIAKAFSYNAKIVI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
12-161 |
2.04e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 68.56 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-NPrvRTGSIHFMGEDISELPTHAI--MRKGLAIspegrrVF 88
Cdd:COG4172 297 GHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRlIP--SEGEIRFDGQDLDGLSRRALrpLRRRMQV------VF 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PD----LN--------VLENLQMGGFFLNREEIEAglehvfelfpRLRErATQRSGL-----------MSGGEQQMLAIG 145
Cdd:COG4172 369 QDpfgsLSprmtvgqiIAEGLRVHGPGLSAAERRA----------RVAE-ALEEVGLdpaarhrypheFSGGQRQRIAIA 437
|
170
....*....|....*.
gi 648465099 146 RALMSKPRMLLLDEPT 161
Cdd:COG4172 438 RALILEPKLLVLDEPT 453
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
17-211 |
2.34e-13 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 65.70 E-value: 2.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISelpthaimrkglAISPEGRRvfpdlnvlen 96
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS------------QWDPNELG---------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 lQMGGFFLNREEIEAGlehvfelfprlreraTQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEII 176
Cdd:cd03246 76 -DHVGYLPQDDELFSG---------------SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
|
170 180 190
....*....|....*....|....*....|....*
gi 648465099 177 KTIRDDGITVFLVEQNANkALQIADRGYVLETGRI 211
Cdd:cd03246 140 AALKAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
17-183 |
2.58e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 66.44 E-value: 2.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIsELPTHAimrkgLAISPEGRRVF--PDLNVL 94
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-DDPDVA-----EACHYLGHRNAmkPALTVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLQMGGFFLNREE--IEA-----GLEHVFELfprlreratqRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK13539 92 ENLEFWAAFLGGEEldIAAaleavGLAPLAHL----------PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
|
170
....*....|....*.
gi 648465099 168 IIEQIFEIIKTIRDDG 183
Cdd:PRK13539 162 AVALFAELIRAHLAQG 177
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
17-221 |
2.82e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.59 E-value: 2.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpTHAIMRKGLAISPEGRRVFPDlNVLEN 96
Cdd:PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-SHSVLRQGVAMVQQDPVVLAD-TFLAN 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMGgfflnREEIEAGLEHVFE--------------LFPRLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTL 162
Cdd:PRK10790 435 VTLG-----RDISEEQVWQALEtvqlaelarslpdgLYTPLGEQGNN----LSVGQKQLLALARVLVQTPQILILDEATA 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 163 GLAPLIIEQIFEIIKTIRDDgiTVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:PRK10790 506 NIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
9-216 |
3.92e-13 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 66.26 E-value: 3.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 9 SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprvrtgsihfmgediSELPTH-AIMRKGlaispegrRV 87
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAG----------------ILEPTSgRVEVNG--------RV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 ---------F-PDLNVLENLQMGGFFL--NREEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRML 155
Cdd:COG1134 90 sallelgagFhPELTGRENIYLNGRLLglSRKEIDEKFDEIVE-FAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDIL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648465099 156 LLDEptlGLA---PLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:COG1134 169 LVDE---VLAvgdAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGD 229
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
16-223 |
4.28e-13 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 67.75 E-value: 4.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDI---SELPTHAIMRKGLAISPEGRRVFPDLN 92
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIakiSDAELREVRRKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 VLENLQMG---GFFLNREEIEAGLEHVFELfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLI- 168
Cdd:PRK10070 123 VLDNTAFGmelAGINAEERREKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIr 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 169 IEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLN 223
Cdd:PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
7-212 |
5.38e-13 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 66.85 E-value: 5.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 7 INSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVRTGSIHFMGEDISELPT---HAIMRKGLA 79
Cdd:COG4170 13 IDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGitkdNWHVTADRFRWNGIDLLKLSPrerRKIIGREIA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 I---SPEG-----RRVFPDLN-VLENLQMGGFFLNReeIEAGLEHVFELFPRLRERATQRsgLM-------SGGEQQMLA 143
Cdd:COG4170 93 MifqEPSScldpsAKIGDQLIeAIPSWTFKGKWWQR--FKWRKKRAIELLHRVGIKDHKD--IMnsyphelTEGECQKVM 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 144 IGRALMSKPRMLLLDEPTLGLAPLIIEQIFEII-KTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:COG4170 169 IAMAIANQPRLLIADEPTNAMESTTQAQIFRLLaRLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
17-221 |
5.53e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 67.38 E-value: 5.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTI-CGNPR--VRTGSIHFMGEDIselpTHAIMRKGLAISPEGRRVFPDLNV 93
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALaFRSPKgvKGSGSVLLNGMPI----DAKEMRAISAYVQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQ-MGGFFLNREEIEAG-LEHVFELFPRLRERATQ--------RSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:TIGR00955 117 REHLMfQAHLRMPRRVTKKEkRERVDEVLQALGLRKCAntrigvpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITVFL-VEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICtIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-221 |
5.58e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 67.42 E-value: 5.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG---NPRVR--TGSIHFMGEDI---SELPTHAImrKGLAISPEGRR 86
Cdd:PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRllpSPPVVypSGDIRFHGESLlhaSEQTLRGV--RGNKIAMIFQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 VFPDLNVLENLQ------------MGGFfLNREEIEAGLEHV--FELFPRLRERATQrsglMSGGEQQMLAIGRALMSKP 152
Cdd:PRK15134 101 PMVSLNPLHTLEkqlyevlslhrgMRRE-AARGEILNCLDRVgiRQAAKRLTDYPHQ----LSGGERQRVMIAMALLTRP 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLL 221
Cdd:PRK15134 176 ELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-211 |
8.40e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 66.41 E-value: 8.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGY-GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpthaimrkgla 79
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 iSPEGR---RVF------PDLNVLENLQMG----GFflNREEIEAGLEHV---FELFPRLRERATQrsglMSGGEQQMLA 143
Cdd:PRK11650 72 -EPADRdiaMVFqnyalyPHMSVRENMAYGlkirGM--PKAEIEERVAEAariLELEPLLDRKPRE----LSGGQRQRVA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 144 IGRALMSKPRMLLLDEPTLGL-APLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK11650 145 MGRAIVREPAVFLFDEPLSNLdAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-212 |
8.44e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 65.78 E-value: 8.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQ--ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGL 78
Cdd:PRK13632 7 MIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-RKKI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AI---SPE----GRRVFPDLNV-LENLQmggffLNREEIEAGLEHVfelfprlreraTQRSGL----------MSGGEQQ 140
Cdd:PRK13632 86 GIifqNPDnqfiGATVEDDIAFgLENKK-----VPPKKMKDIIDDL-----------AKKVGMedyldkepqnLSGGQKQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 141 MLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGI-TVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAIL-ADKVIVFSEGKLI 221
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
12-176 |
8.46e-13 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 64.69 E-value: 8.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaiMRKGLAISPEGRRVFPDL 91
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDE--PHENILYLGHLPGLKPEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREE--IEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLII 169
Cdd:TIGR01189 89 SALENLHFWAAIHGGAQrtIEDALAAV-----GLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGV 163
|
....*..
gi 648465099 170 EQIFEII 176
Cdd:TIGR01189 164 ALLAGLL 170
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
17-211 |
8.48e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 65.91 E-value: 8.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAI-SPE----GRRVFPD 90
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKiGMVFqNPDnqfvGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNV-LENLQMggfflNREEIEAGLEHVFEL--FPRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK13650 103 VAFgLENKGI-----PHEEMKERVNEALELvgMQDFKEREPAR---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648465099 168 IIEQIFEIIKTIRDD-GITVFLVEQNANKaLQIADRGYVLETGRI 211
Cdd:PRK13650 175 GRLELIKTIKGIRDDyQMTVISITHDLDE-VALSDRVLVMKNGQV 218
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
16-216 |
1.07e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 65.81 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHfMGEDISELPTHA----IMRKGLAIS---PEgRRVF 88
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVITAGKKNkklkPLRKKVGIVfqfPE-HQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDlNVLENLQMG--GFFLNREEIEAGLEHVFELFPrLRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:PRK13634 100 EE-TVEKDICFGpmNFGVSEEDAKQKAREMIELVG-LPEELLARSPFeLSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648465099 166 PLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDT 216
Cdd:PRK13634 178 PKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-230 |
1.40e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 65.39 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAIS 81
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR-IGLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 PEGRRVFPDLNVLENLQMGG------FFLNREEIEAGLEHVFELfPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRML 155
Cdd:PRK10253 87 AQNATTPGDITVQELVARGRyphqplFTRWRKEDEEAVTKAMQA-TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 156 LLDEPTLGLAplIIEQI--FEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAY 230
Cdd:PRK10253 166 LLDEPTTWLD--ISHQIdlLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
16-211 |
1.63e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 65.91 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRR---VFPDLN 92
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRstgIYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 V-----LENLQ--MGGF-FLNREEIEAGLEHVFELFpRLRERATQRS-GLMSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:PRK10982 343 IgfnslISNIRnyKNKVgLLDNSRMKSDTQWVIDSM-RVKTPGHRTQiGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 164 LAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
10-212 |
2.77e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.44 E-value: 2.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVR---TGSIHFMGEDISElpTHAIMRKGLAISPEGRR 86
Cdd:cd03233 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKE--FAEKYPGEIIYVSEEDV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 VFPDLNVlenlqmggfflnREEIEAglehvfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:cd03233 94 HFPTLTV------------RETLDF----------ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 167 LIIEQIFEIIKTIRD--DGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:cd03233 152 STALEILKCIRTMADvlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
16-216 |
2.79e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 64.34 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISEL----------------PTH----AIMR 75
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEenlwdirnkagmvfqnPDNqivaTIVE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KGLAISPEGRRVFPDLNvlenlqmggfflnREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRML 155
Cdd:PRK13633 105 EDVAFGPENLGIPPEEI-------------RERVDESLKKV-----GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 156 LLDEPTLGLAPLIIEqifEIIKTIRD----DGITVFLVEQNANKALQiADRGYVLETGRIVLHDT 216
Cdd:PRK13633 167 IFDEPTAMLDPSGRR---EVVNTIKElnkkYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-161 |
2.84e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.36 E-value: 2.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 4 LDSINSGY---GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN-----------------------PRVRTGS 57
Cdd:PRK11147 3 LISIHGAWlsfSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEvllddgriiyeqdlivarlqqdpPRNVEGT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 58 IH-FMGEDISELPT-----HAIMRKgLAISPEGRrvfpDLNVLENLQMGGFFLNREEIEAGLEHVFELfprLRERATQRS 131
Cdd:PRK11147 83 VYdFVAEGIEEQAEylkryHDISHL-VETDPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQ---LGLDPDAAL 154
|
170 180 190
....*....|....*....|....*....|
gi 648465099 132 GLMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-194 |
3.23e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 63.58 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLAI 80
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-YRQQVSY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 SPEGRRVFPDlNVLENL----QMGGFFLNREEIEAGLEHvFELfPRlrERATQRSGLMSGGEQQMLAIGRALMSKPRMLL 156
Cdd:PRK10247 86 CAQTPTLFGD-TVYDNLifpwQIRNQQPDPAIFLDDLER-FAL-PD--TILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 648465099 157 LDEPTLGLAPLIIEQIFEII-KTIRDDGITVFLVEQNAN 194
Cdd:PRK10247 161 LDEITSALDESNKHNVNEIIhRYVREQNIAVLWVTHDKD 199
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
17-213 |
4.32e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 64.77 E-value: 4.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISelpthaimrkglAISPE--GRRV------- 87
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLS------------QWDREelGRHIgylpqdv 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 --FPDlNVLENL-QMGGffLNREEIE--AGLEHVFELFPRLRE----RATQRSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:COG4618 416 elFDG-TIAENIaRFGD--ADPEKVVaaAKLAGVHEMILRLPDgydtRIGEGGARLSGGQRQRIGLARALYGDPRLVVLD 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 159 EPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANkALQIADRGYVLETGRIVL 213
Cdd:COG4618 493 EPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS-LLAAVDKLLVLRDGRVQA 546
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-180 |
5.37e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 64.73 E-value: 5.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTT----LSTICGNprvrtGSIHFMGEdiselPTHAIMRKGLAisPEGRR---V 87
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTglalLRLINSQ-----GEIWFDGQ-----PLHNLNRRQLL--PVRHRiqvV 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 F--------PDLNVL----ENLQMGGFFLNREEIEAGLEHVFE---LFPRLRERATQRsglMSGGEQQMLAIGRALMSKP 152
Cdd:PRK15134 368 FqdpnsslnPRLNVLqiieEGLRVHQPTLSAAQREQQVIAVMEevgLDPETRHRYPAE---FSGGQRQRIAIARALILKP 444
|
170 180
....*....|....*....|....*...
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTIR 180
Cdd:PRK15134 445 SLIILDEPTSSLDKTVQAQILALLKSLQ 472
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
15-229 |
5.47e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 64.74 E-value: 5.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEgrrvfPDL--- 91
Cdd:TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE-----PVLfsg 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIEAGLE----HVF--ELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLa 165
Cdd:TIGR00958 570 SVRENIAYGLTDTPDEEIMAAAKaanaHDFimEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL- 648
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 166 PLIIEQIFEIIKTIRDdgITVFLVEQN---ANKALQIAdrgyVLETGRIVLHDTGANLLLNDQVGKA 229
Cdd:TIGR00958 649 DAECEQLLQESRSRAS--RTVLLIAHRlstVERADQIL----VLKKGSVVEMGTHKQLMEDQGCYKH 709
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-212 |
7.41e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 64.10 E-value: 7.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 20 VSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRtGSIHFMGEDISELPtHAIMRKGLA------ISPEGrrvfpdlNV 93
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELD-PESWRKHLSwvgqnpQLPHG-------TL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 94 LENLQMGGFFLNREEIEAGLE--HVFELFPRL-----RERATQRSGLmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:PRK11174 440 RDNVLLGNPDASDEQLQQALEnaWVSEFLPLLpqgldTPIGDQAAGL-SVGQAQRLALARALLQPCQLLLLDEPTASLDA 518
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 167 LIIEQIFEIIKTIRDDGITVFLVEQNANkaLQIADRGYVLETGRIV 212
Cdd:PRK11174 519 HSEQLVMQALNAASRRQTTLMVTHQLED--LAQWDQIWVMQDGQIV 562
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
4-212 |
7.92e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 63.49 E-value: 7.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 4 LDSINSGYGA-----IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSI----HFMGEDISELPTHAIM 74
Cdd:PRK13645 9 LDNVSYTYAKktpfeFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTivgdYAIPANLKKIKEVKRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 RK--GLAISPEGRRVFPDlNVLENLQMGGFFL--NREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMS 150
Cdd:PRK13645 89 RKeiGLVFQFPEYQLFQE-TIEKDIAFGPVNLgeNKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 151 KPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
15-211 |
8.81e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 62.49 E-value: 8.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKGLAISPEgrrvfPDL--- 91
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE-----PVLfar 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIEAGLE----HVF--ELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL- 164
Cdd:cd03248 103 SLQDNIAYGLQSCSFECVKEAAQkahaHSFisELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALd 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 165 --APLIIEQIFEIIKTIRddgiTVFLVEQNANkALQIADRGYVLETGRI 211
Cdd:cd03248 183 aeSEQQVQQALYDWPERR----TVLVIAHRLS-TVERADQILVLDGGRI 226
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-212 |
8.84e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 64.05 E-value: 8.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVR--TGSI----------------HFMGE 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEptSGRIiyhvalcekcgyverpSKVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 64 -----------------DISELPTHAIMRKgLAIS-------PEGRRVFPdlNVLENLQMGGFflnreEIEAGLEHVFEL 119
Cdd:TIGR03269 81 pcpvcggtlepeevdfwNLSDKLRRRIRKR-IAIMlqrtfalYGDDTVLD--NVLEALEEIGY-----EGKEAVGRAVDL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 120 FP--RLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFE-IIKTIRDDGITVFLVEQNANKA 196
Cdd:TIGR03269 153 IEmvQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNaLEEAVKASGISMVLTSHWPEVI 232
|
250
....*....|....*.
gi 648465099 197 LQIADRGYVLETGRIV 212
Cdd:TIGR03269 233 EDLSDKAIWLENGEIK 248
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-209 |
2.39e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 63.11 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQ--ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIseLPTHAIMRKGL 78
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI--LTNISDVHQNM 2014
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 AISPEgrrvfpdlnvlenlqmggfFLNREEIEAGLEHVFeLFPRLR-------ERATQRS--------------GLMSGG 137
Cdd:TIGR01257 2015 GYCPQ-------------------FDAIDDLLTGREHLY-LYARLRgvpaeeiEKVANWSiqslglslyadrlaGTYSGG 2074
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 138 EQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETG 209
Cdd:TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
14-212 |
2.79e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 61.65 E-value: 2.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRK-GLAI-SPEGRRVFPDL 91
Cdd:PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKiGMVFqNPDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NVLENLQMGGFFLNREEIEAGLEHVFeLFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQ 171
Cdd:PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEAL-LAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648465099 172 IFEIIKTIRDD-GITVFLVEQNANKALQiADRGYVLETGRIV 212
Cdd:PRK13642 179 IMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEII 219
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
16-226 |
2.99e-11 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 62.34 E-value: 2.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpTHAIMRKGLAISPEGRRVFPDlNVLE 95
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY-TLASLRNQVALVSQNVHLFND-TIAN 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMG-GFFLNREEIE--AGLEHVFELFPRLRERATQRSG----LMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL---A 165
Cdd:PRK11176 436 NIAYArTEQYSREQIEeaARMAYAMDFINKMDNGLDTVIGengvLLSGGQRQRIAIARALLRDSPILILDEATSALdteS 515
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 166 PLIIEQIFEIIKTIRddgiTVfLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQV 226
Cdd:PRK11176 516 ERAIQAALDELQKNR----TS-LVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGV 571
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
16-216 |
3.86e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 61.35 E-value: 3.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG------NPRVRtgsIHFMGEDISElPTHAIMRKGLAI---SPE--- 83
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllpddNPNSK---ITVDGITLTA-KTVWDIREKVGIvfqNPDnqf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 84 -GRRVFPDLNV-LENLQmggffLNREEIEAGLEHVFELFPRLRERATQRSGLmSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:PRK13640 98 vGATVGDDVAFgLENRA-----VPRPEMIKIVRDVLADVGMLDYIDSEPANL-SGGQKQRVAIAGILAVEPKIIILDEST 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 162 LGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQiADRGYVLETGRIVLHDT 216
Cdd:PRK13640 172 SMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGS 226
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
20-164 |
4.50e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.20 E-value: 4.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 20 VSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISElpTHAIMRKGLAISPEGRRVFPDLNVLENLQM 99
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF--QRDSIARGLLYLGHAPGIKTTLSVLENLRF 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 100 GGFFLNREEIEAGLEHV----FELFPrlreratqrSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03231 97 WHADHSDEQVEEALARVglngFEDRP---------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-224 |
5.11e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.06 E-value: 5.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPThAIMRKGLAISPEGRRVFP------- 89
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKVLGIIPQAPVLFSgtvrfnl 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 -------DLNVLENLQMG---------GFFLNREEIEAGlehvfELFprlreratqrsglmSGGEQQMLAIGRALMSKPR 153
Cdd:PLN03130 1334 dpfnehnDADLWESLERAhlkdvirrnSLGLDAEVSEAG-----ENF--------------SVGQRQLLSLARALLRRSK 1394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 154 MLLLDEPTlglAPLIIEQIFEIIKTIRDD--GITVFLVEQNANKALQiADRGYVLETGRIVLHDTGANLLLND 224
Cdd:PLN03130 1395 ILVLDEAT---AAVDVRTDALIQKTIREEfkSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNE 1463
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
17-198 |
5.22e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.85 E-value: 5.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICgnpRVRT--GSIHFMGEDISELpTHAIMRKGLAISPEGRRVFPdlnvl 94
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL---RLLSteGEIQIDGVSWNSV-TLQTWRKAFGVIPQKVFIFS----- 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 enlqmGGFFLN--------REEI-----EAGLEHVFELFPRLRERATQRSG-LMSGGEQQMLAIGRALMSKPRMLLLDEP 160
Cdd:TIGR01271 1306 -----GTFRKNldpyeqwsDEEIwkvaeEVGLKSVIEQFPDKLDFVLVDGGyVLSNGHKQLMCLARSILSKAKILLLDEP 1380
|
170 180 190
....*....|....*....|....*....|....*...
gi 648465099 161 TLGLAPLIIEQIFEIIKTIRDDgITVFLVEQNANKALQ 198
Cdd:TIGR01271 1381 SAHLDPVTLQIIRKTLKQSFSN-CTVILSEHRVEALLE 1417
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
18-160 |
1.23e-10 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 59.05 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 18 HDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPT----------HAimrkgLAISPEgrrv 87
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDeyhqdllylgHQ-----PGIKTE---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 fpdLNVLENLQmggFF------LNREEIEAGLEHV----FELFPrlreratqrSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:PRK13538 89 ---LTALENLR---FYqrlhgpGDDEALWEALAQVglagFEDVP---------VRQLSAGQQRRVALARLWLTRAPLWIL 153
|
...
gi 648465099 158 DEP 160
Cdd:PRK13538 154 DEP 156
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-164 |
1.39e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 59.36 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-----------NPRVRTGsihFMGEDISELP 69
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGlvapdegvikrNGKLRIG---YVPQKLYLDT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 70 THAIMRKGLAISPEGRRVFPDLNVLENLQMGgfflnreeieaglehvfelfpRLRERATQRsglMSGGEQQMLAIGRALM 149
Cdd:PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAG---------------------HLIDAPMQK---LSGGETQRVLLARALL 136
|
170
....*....|....*
gi 648465099 150 SKPRMLLLDEPTLGL 164
Cdd:PRK09544 137 NRPQLLVLDEPTQGV 151
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
17-221 |
1.97e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 59.10 E-value: 1.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRtGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFPDlNVLEN 96
Cdd:cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQK-WRKAFGVIPQKVFIFSG-TFRKN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMGGFFlNREEI-----EAGLEHVFELFPRLRERATQRSG-LMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIE 170
Cdd:cd03289 97 LDPYGKW-SDEEIwkvaeEVGLKSVIEQFPGQLDFVLVDGGcVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 171 QIFEIIKTIRDDgITVFLVEQNANKALQiADRGYVLETGRIVLHDTGANLL 221
Cdd:cd03289 176 VIRKTLKQAFAD-CTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL 224
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-161 |
2.30e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 57.07 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMgediselpthaimrKGLAIS 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG--------------STVKIG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 82 pegrrvfpdlnvlenlqmggfflnreeieaglehvfeLFPRLreratqrsglmSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:cd03221 67 -------------------------------------YFEQL-----------SGGEKMRLALAKLLLENPNLLLLDEPT 98
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
13-212 |
2.81e-10 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 58.95 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 13 AIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELpTHAIMRkglAISPEGRRVFPD-- 90
Cdd:PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM-KDDEWR---AVRSDIQMIFQDpl 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 --LN--------VLENLQMGGFFLNREEIEaglEHVFE------LFPRLRERATQRsglMSGGEQQMLAIGRALMSKPRM 154
Cdd:PRK15079 109 asLNprmtigeiIAEPLRTYHPKLSRQEVK---DRVKAmmlkvgLLPNLINRYPHE---FSGGQCQRIGIARALILEPKL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 155 LLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK15079 183 IICDEPVSALDVSIQAQVVNLLQQLqREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
17-189 |
3.04e-10 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 57.16 E-value: 3.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHF-MGEDISELPTHAIMrkglaisPEGrrvfpdlnvle 95
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMpEGEDLLFLPQRPYL-------PLG----------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLqmggfflnREEIeaglehvfeLFPRLREratqrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEI 175
Cdd:cd03223 79 TL--------REQL---------IYPWDDV--------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
|
170
....*....|....
gi 648465099 176 IKtirDDGITVFLV 189
Cdd:cd03223 134 LK---ELGITVISV 144
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
16-159 |
3.04e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 59.34 E-value: 3.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFPDlNVLE 95
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-WRSRLAVVSQTPFLFSD-TVAN 407
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLNREEIE--AGLEHVFELFPRLRE----RATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK10789 408 NIALGRPDATQQEIEhvARLASVHDDILRLPQgydtEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
15-161 |
3.09e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 59.45 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKtttlSTICgnpR-------VRTGSIHFMGEDISELpTHAIMRKGLAISPEGRRV 87
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGK----STLA---RllfrfydVTSGRILIDGQDIRDV-TQASLRAAIGIVPQDTVL 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 FPDlNVLENLQMGGFFLNREEIE-----AGLEHVFELFP-----RLRERatqrsGL-MSGGEQQMLAIGRALMSKPRMLL 156
Cdd:COG5265 444 FND-TIAYNIAYGRPDASEEEVEaaaraAQIHDFIESLPdgydtRVGER-----GLkLSGGEKQRVAIARTLLKNPPILI 517
|
....*
gi 648465099 157 LDEPT 161
Cdd:COG5265 518 FDEAT 522
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-230 |
3.85e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.11 E-value: 3.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP--RVRTGSIHFMGEDISELPTHAIMRKG- 77
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFKGESILDLEPEERAHLGi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 78 ------------------LAISPEGRRVF---PDLNVLENLQ----------MGGFFLNReeieagleHVFELFprlrer 126
Cdd:CHL00131 87 flafqypieipgvsnadfLRLAYNSKRKFqglPELDPLEFLEiineklklvgMDPSFLSR--------NVNEGF------ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 127 atqrsglmSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVeQNANKALQ--IADRGY 204
Cdd:CHL00131 153 --------SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILI-THYQRLLDyiKPDYVH 223
|
250 260
....*....|....*....|....*.
gi 648465099 205 VLETGRIVLhdTGANLLLNDQVGKAY 230
Cdd:CHL00131 224 VMQNGKIIK--TGDAELAKELEKKGY 247
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
12-212 |
4.16e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 58.66 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVRTGSIHFMGEDIselpthaimrkgLAISPEGRRV 87
Cdd:PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdNWRVTADRMRFDDIDL------------LRLSPRERRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 FPDLNVLENLQMGGFFLN------REEIEA--GLEHVFELFPRLRERATQ------RSGL-------------MSGGEQQ 140
Cdd:PRK15093 86 LVGHNVSMIFQEPQSCLDpservgRQLMQNipGWTYKGRWWQRFGWRKRRaiellhRVGIkdhkdamrsfpyeLTEGECQ 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 141 MLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
12-210 |
4.43e-10 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 58.58 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 12 GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVrTGSIHFMGEDISELPTHAIMR-KGLAISpegrR 86
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGllaaNGRI-GGSATFNGREILNLPEKELNKlRAEQIS----M 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 87 VFPD----LN----VLENLqMGGFFLNR--EEIEAGLEHVFEL----FPRLRERATQRSGLMSGGEQQMLAIGRALMSKP 152
Cdd:PRK09473 102 IFQDpmtsLNpymrVGEQL-MEVLMLHKgmSKAEAFEESVRMLdavkMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRP 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGR 210
Cdd:PRK09473 181 KLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITHDLGVVAGICDKVLVMYAGR 239
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
15-212 |
4.70e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 58.65 E-value: 4.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP--RVRTGSIHFMGEDISELPTHAIMRKGLAISPEGRRVFpDLN 92
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSygRNISGTVFKDGKEVDVSTVSDAIDAGLAYVTEDRKGY-GLN 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 93 VLENLQM------------GGFFLNREEIEAGLEHVfelfPRLRERA---TQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:NF040905 353 LIDDIKRnitlanlgkvsrRGVIDENEEIKVAEEYR----KKMNIKTpsvFQKVGNLSGGNQQKVVLSKWLFTDPDVLIL 428
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 158 DEPTLGlapliIE-----QIFEIIKTIRDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:NF040905 429 DEPTRG-----IDvgakyEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-174 |
5.04e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.22 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN-PRVRTGSIhfmgediselpthaIMRKGLAISPEGRRVFpDLNVLE 95
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGElSHAETSSV--------------VIRGSVAYVPQVSWIF-NATVRE 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLNREEIEA----GLEHVFELFP-RLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIE 170
Cdd:PLN03232 698 NILFGSDFESERYWRAidvtALQHDLDLLPgRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
|
....
gi 648465099 171 QIFE 174
Cdd:PLN03232 778 QVFD 781
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
16-210 |
9.77e-10 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 56.32 E-value: 9.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdISELPTHAIMRKGlaispegrrvfpdlNVLE 95
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IAYVSQEPWIQNG--------------TIRE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFLN---REEIEA-GLEHVFELFP-----RLRERatqrsGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:cd03250 85 NILFGKPFDEeryEKVIKAcALEPDLEILPdgdltEIGEK-----GInLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 166 PLIIEQIFE-IIKTIRDDGITVFLVEQNANkALQIADRGYVLETGR 210
Cdd:cd03250 160 AHVGRHIFEnCILGLLLNNKTRILVTHQLQ-LLPHADQIVVLDNGR 204
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-224 |
9.84e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 58.06 E-value: 9.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPThAIMRKGLAISPEGRRVFPDlNVLEN 96
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLRRVLSIIPQSPVLFSG-TVRFN 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMGGfflnrEEIEAGL------EHVFELFPR----LRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTlglAP 166
Cdd:PLN03232 1330 IDPFS-----EHNDADLwealerAHIKDVIDRnpfgLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT---AS 1401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 167 LIIEQIFEIIKTIRDD--GITVFLVEQNANKALQiADRGYVLETGRIVLHDTGANLLLND 224
Cdd:PLN03232 1402 VDVRTDSLIQRTIREEfkSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
17-221 |
9.98e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.03 E-value: 9.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTT-TLSTICGNPRVRtGSIHFMGEDISELPTHAiMRKGLAISPEGRRVFPDlNVLE 95
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSlTLGLFRINESAE-GEIIIDGLNIAKIGLHD-LRFKITIIPQDPVLFSG-SLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFFlNREEIEAGLE----HVF--ELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLII 169
Cdd:TIGR00957 1379 NLDPFSQY-SDEEVWWALElahlKTFvsALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT---AAVDL 1454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648465099 170 EQIFEIIKTIRD--DGITVFLVEQNANKALQIAdRGYVLETGRIVLHDTGANLL 221
Cdd:TIGR00957 1455 ETDNLIQSTIRTqfEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLL 1507
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
18-212 |
1.14e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 56.63 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 18 HDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG--NPRVR--TGSIHFMGEDISelPTHAIMRKGLAISPEGRRVFPDL-- 91
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGilPAGVRqtAGRVLLDGKPVA--PCALRGRKIATIMQNPRSAFNPLht 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 ---NVLENLQMGGFFLNREEIEAGLEHV-FELFPR-LRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAP 166
Cdd:PRK10418 98 mhtHARETCLALGKPADDATLTAALEAVgLENAARvLKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648465099 167 LIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK10418 174 VAQARILDLLESIvQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
17-230 |
1.17e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 56.72 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAIMRKgLAISPEGRRVFPDLNVLEN 96
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK-VAYLPQQLPAAEGMTVREL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMG--------GFF--LNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAp 166
Cdd:PRK10575 106 VAIGrypwhgalGRFgaADREKVEEAISLV-----GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD- 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 167 lIIEQIfEIIKTI----RDDGITVFLVEQNANKALQIADRGYVLETGRIVLHDTGANLLLNDQVGKAY 230
Cdd:PRK10575 180 -IAHQV-DVLALVhrlsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
7-189 |
3.16e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 55.03 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 7 INSGY----GAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISE---LPTHAIMRKGLA 79
Cdd:cd03290 3 VTNGYfswgSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEpsfEATRSRNRYSVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 80 ISPEGRRVFpDLNVLENLQMGGFFlNREEIEA-----GLEHVFELFPRLRERATQRSGL-MSGGEQQMLAIGRALMSKPR 153
Cdd:cd03290 83 YAAQKPWLL-NATVEENITFGSPF-NKQRYKAvtdacSLQPDIDLLPFGDQTEIGERGInLSGGQRQRICVARALYQNTN 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 648465099 154 MLLLDEPTLGLAPLIIEQIFE--IIKTIRDDGITVFLV 189
Cdd:cd03290 161 IVFLDDPFSALDIHLSDHLMQegILKFLQDDKRTLVLV 198
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
14-212 |
3.19e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.40 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 14 IQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAI--MRKGLAI-------SPEG 84
Cdd:PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLqaLRRDIQFifqdpyaSLDP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 RRVFPDlNVLENLQMGGFfLNREEIEAGLEHVFELFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:PRK10261 417 RQTVGD-SIMEPLRVHGL-LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648465099 165 APLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK10261 495 DVSIRGQIINLLLDLqRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
16-188 |
4.03e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 4.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTL-------------STICGNP--------RVRTGsihFMGEDISelpthaim 74
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMkmltgllpasegeAWLFGQPvdagdiatRRRVG---YMSQAFS-------- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 75 rkglaispegrrVFPDLNVLENLQMGG--FFLNREEIEAGLEHVFELFpRLRERATQRSGLMSGGEQQMLAIGRALMSKP 152
Cdd:NF033858 350 ------------LYGELTVRQNLELHArlFHLPAAEIAARVAEMLERF-DLADVADALPDSLPLGIRQRLSLAVAVIHKP 416
|
170 180 190
....*....|....*....|....*....|....*..
gi 648465099 153 RMLLLDEPTLGLAPLIIEQIFEI-IKTIRDDGITVFL 188
Cdd:NF033858 417 ELLILDEPTSGVDPVARDMFWRLlIELSREDGVTIFI 453
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
11-209 |
5.48e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 53.87 E-value: 5.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 11 YGAIQ-ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTIcgnprvrtgsihfmgediselpthaIMRKGLAISPEGRRVFP 89
Cdd:cd03238 4 SGANVhNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------------------LYASGKARLISFLPKFS 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMGgfFLnreeIEAGLEHVfelfprlreRATQRSGLMSGGEQQMLAIGRALMS--KPRMLLLDEPTLGLAPL 167
Cdd:cd03238 59 RNKLIFIDQLQ--FL----IDVGLGYL---------TLGQKLSTLSGGELQRVKLASELFSepPGTLFILDEPSTGLHQQ 123
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648465099 168 IIEQIFEIIKTIRDDGITVFLVEQNaNKALQIADrgYVLETG 209
Cdd:cd03238 124 DINQLLEVIKGLIDLGNTVILIEHN-LDVLSSAD--WIIDFG 162
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
16-209 |
4.70e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 52.06 E-value: 4.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHAImRKGLAI---SPE----GRRVF 88
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL-RKHIGIvfqNPDnqfvGSIVK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 89 PDLNV-LENlQMGGFFLNREEIEAGLEHVfelfpRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK13648 103 YDVAFgLEN-HAVPYDEMHRRVSEALKQV-----DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648465099 168 IIEQIFEIIKTIRDD-GITVFLVEQNANKALQ-----IADRGYVLETG 209
Cdd:PRK13648 177 ARQNLLDLVRKVKSEhNITIISITHDLSEAMEadhviVMNKGTVYKEG 224
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
6-182 |
1.20e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.05 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 6 SINSGYGAIQA------LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprvrtgsihfmgedisELP----THAIMR 75
Cdd:PLN03130 616 SIKNGYFSWDSkaerptLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG-----------------ELPprsdASVVIR 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 76 KGLAISPEGRRVFpDLNVLENLQMGGFF----LNREEIEAGLEHVFELFP-----RLRERATQrsglMSGGEQQMLAIGR 146
Cdd:PLN03130 679 GTVAYVPQVSWIF-NATVRDNILFGSPFdperYERAIDVTALQHDLDLLPggdltEIGERGVN----ISGGQKQRVSMAR 753
|
170 180 190
....*....|....*....|....*....|....*.
gi 648465099 147 ALMSKPRMLLLDEPTLGLAPLIIEQIFEiiKTIRDD 182
Cdd:PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFD--KCIKDE 787
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-202 |
1.55e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 51.75 E-value: 1.55e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648465099 134 MSGGEQQMLAIGRALMSKPR--MLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNaNKALQIADR 202
Cdd:PRK00635 477 LSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADR 546
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
102-209 |
1.87e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 51.37 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 102 FFLN----REEIEA----GLEHVfelfPRLRERATqrsglMSGGEQQMLAIGRALMS---KPRMLLLDEPTLGLAPLIIE 170
Cdd:PRK00635 779 FFLDepsiHEKIHAlcslGLDYL----PLGRPLSS-----LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIK 849
|
90 100 110
....*....|....*....|....*....|....*....
gi 648465099 171 QIFEIIKTIRDDGITVFLVEQNANkALQIADrgYVLETG 209
Cdd:PRK00635 850 ALIYVLQSLTHQGHTVVIIEHNMH-VVKVAD--YVLELG 885
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
15-186 |
2.28e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 49.55 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnpRVRTGSIHfmGEdiselpthaIMRKGLAISPEGRRV------- 87
Cdd:cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVIT--GE---------ILINGRPLDKNFQRStgyveqq 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 88 ---FPDLNVLENLqmggfflnreEIEAGLEhvfELFPRLRERATqrsglmsggeqqmlaIGRALMSKPRMLLLDEPTLGL 164
Cdd:cd03232 88 dvhSPNLTVREAL----------RFSALLR---GLSVEQRKRLT---------------IGVELAAKPSILFLDEPTSGL 139
|
170 180
....*....|....*....|..
gi 648465099 165 APLIIEQIFEIIKTIRDDGITV 186
Cdd:cd03232 140 DSQAAYNIVRFLKKLADSGQAI 161
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-161 |
3.96e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.17 E-value: 3.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIhfmgediselpthaimrkGLAi 80
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI------------------GLA- 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 81 spegrrvfpdlnvlENLQMGGFFLNREEI----EAGLEHVFELFPR-----LR----------ERATQRSGLMSGGEQQM 141
Cdd:PRK10636 373 --------------KGIKLGYFAQHQLEFlradESPLQHLARLAPQeleqkLRdylggfgfqgDKVTEETRRFSGGEKAR 438
|
170 180
....*....|....*....|
gi 648465099 142 LAIGRALMSKPRMLLLDEPT 161
Cdd:PRK10636 439 LVLALIVWQRPNLLLLDEPT 458
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
15-212 |
7.57e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 49.34 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP----RVRTGSIHFMGEDISELPTHaiMRKGLAISPEGRRVFPD 90
Cdd:TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDGITPEEIKKH--YRGDVVYNAETDVHFPH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 LNVLENL---------QMGGFFLNREEIEAGLEHVFELFPRLRERATQRSGL-----MSGGEQQMLAIGRALMSKPRMLL 156
Cdd:TIGR00956 153 LTVGETLdfaarcktpQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNdfvrgVSGGERKRVSIAEASLGGAKIQC 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 157 LDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVE--QNANKALQIADRGYVLETGRIV 212
Cdd:TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAiyQCSQDAYELFDKVIVLYEGYQI 290
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
10-161 |
2.36e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 47.62 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 10 GYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFmGEDIsELPTHAIMRKGLAispegrrvfP 89
Cdd:TIGR03719 331 AFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV-KLAYVDQSRDALD---------P 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLenlqmggfflnrEEIEAGLEHVFELFPRLRERA------------TQRSGLMSGGEQQMLAIGRALMSKPRMLLL 157
Cdd:TIGR03719 400 NKTVW------------EEISGGLDIIKLGKREIPSRAyvgrfnfkgsdqQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
|
....
gi 648465099 158 DEPT 161
Cdd:TIGR03719 468 DEPT 471
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
9-164 |
2.37e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 47.27 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 9 SGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTT--TLSTICGNPRvrTGSIHFMGEDISELPTHAI--MRKGLAIspeg 84
Cdd:PRK11308 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTlaRLLTMIETPT--GGELYYQGQDLLKADPEAQklLRQKIQI---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 rrVFPD----LNvlenlqmggfflNREEIEAGLEHVFELFPRL-----RERATQ---RSGL----------M-SGGEQQM 141
Cdd:PRK11308 97 --VFQNpygsLN------------PRKKVGQILEEPLLINTSLsaaerREKALAmmaKVGLrpehydryphMfSGGQRQR 162
|
170 180
....*....|....*....|...
gi 648465099 142 LAIGRALMSKPRMLLLDEPTLGL 164
Cdd:PRK11308 163 IAIARALMLDPDVVVADEPVSAL 185
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
17-210 |
2.37e-06 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 47.95 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGnprvRTGSIHFMGEDISE--LPTHAIMRKgLAISPEGRRVFPDLNVL 94
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAG----RIQGNNFTGTILANnrKPTKQILKR-TGFVTQDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 95 ENLQMGGFF-----LNREEIEAGLEHVF-EL-FPRLRERATQRSGL--MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLA 165
Cdd:PLN03211 159 ETLVFCSLLrlpksLTKQEKILVAESVIsELgLTKCENTIIGNSFIrgISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648465099 166 PLIIEQIFEIIKTIRDDGITVFL-VEQNANKALQIADRGYVLETGR 210
Cdd:PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTsMHQPSSRVYQMFDSVLVLSEGR 284
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
24-190 |
2.40e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 47.86 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 24 IDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHfMGEDISELPTHaimrkglaISPEGrrvfpDLNVLENL------ 97
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD-EDLKISYKPQY--------ISPDY-----DGTVEEFLrsantd 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 98 QMGGFFLNREEIEA-GLEHVFELfpRLREratqrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLIIEQIFEII 176
Cdd:COG1245 429 DFGSSYYKTEIIKPlGLEKLLDK--NVKD--------LSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQRLAVA 495
|
170
....*....|....*...
gi 648465099 177 KTIR----DDGITVFLVE 190
Cdd:COG1245 496 KAIRrfaeNRGKTAMVVD 513
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-161 |
2.56e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.58 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 2 LKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIH--------FMGEDISElpthai 73
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKwsenanigYYAQDHAY------ 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 74 mrkglaispegrrVFP-DLNVLEnlQMGGFFLNREEIEAglehVFELFPRL---RERATQRSGLMSGGEQQMLAIGRALM 149
Cdd:PRK15064 394 -------------DFEnDLTLFD--WMSQWRQEGDDEQA----VRGTLGRLlfsQDDIKKSVKVLSGGEKGRMLFGKLMM 454
|
170
....*....|..
gi 648465099 150 SKPRMLLLDEPT 161
Cdd:PRK15064 455 QKPNVLVMDEPT 466
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-207 |
2.74e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 47.02 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 24 IDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELPTHaimrkglaISPEGRRVFPDL--NVLENLQMGG 101
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY--------IKADYEGTVRDLlsSITKDFYTHP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 102 FFLNREEIEAGLEHVFElfPRLREratqrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLIIEQIFEIIKTIR- 180
Cdd:cd03237 94 YFKTEIAKPLQIEQILD--REVPE--------LSGGELQRVAIAACLSKDADIYLLDEPS---AYLDVEQRLMASKVIRr 160
|
170 180 190
....*....|....*....|....*....|
gi 648465099 181 ---DDGITVFLVEQNANKALQIADRGYVLE 207
Cdd:cd03237 161 faeNNEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
17-174 |
3.15e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.60 E-value: 3.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdiselpthaimrkgLAISPEGRRVFPDlNVLEN 96
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------------ISFSPQTSWIMPG-TIKDN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMG---GFFLNREEIEA-GLEHVFELFPRLRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQ 171
Cdd:TIGR01271 507 IIFGlsyDEYRYTSVIKAcQLEEDIALFPEKDKTVLGEGGItLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586
|
...
gi 648465099 172 IFE 174
Cdd:TIGR01271 587 IFE 589
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
109-202 |
4.97e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 46.10 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 109 IEAGLEHVfelfprlreRATQRSGLMSGGEQQMLAIGRALMSKPRMLL--LDEPTLGLAPLIIEQIFEIIKTIRDDGITV 186
Cdd:cd03270 122 VDVGLGYL---------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192
|
90
....*....|....*.
gi 648465099 187 FLVEQNaNKALQIADR 202
Cdd:cd03270 193 LVVEHD-EDTIRAADH 207
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
90-187 |
5.01e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.95 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 90 DLNVLENLQMGGFFLNREEIE-----AGLEHVFELFPRLRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLG 163
Cdd:PTZ00265 1309 NMSIYENIKFGKEDATREDVKrackfAAIDEFIESLPNKYDTNVGPYGKsLSGGQKQRIAIARALLREPKILLLDEATSS 1388
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 648465099 164 L----APLIIEQIFEI-------IKTI--------RDDGITVF 187
Cdd:PTZ00265 1389 LdsnsEKLIEKTIVDIkdkadktIITIahriasikRSDKIVVF 1431
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-190 |
5.14e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 46.73 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 24 IDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFmGEDISELPTHaimrkglaISPEgrrvfPDLNVLENL-----Q 98
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-ELKISYKPQY--------IKPD-----YDGTVEDLLrsitdD 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 99 MGGFFLNREEIEA-GLEHVFELfpRLREratqrsglMSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLIIEQIFEIIK 177
Cdd:PRK13409 428 LGSSYYKSEIIKPlQLERLLDK--NVKD--------LSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQRLAVAK 494
|
170
....*....|....*..
gi 648465099 178 TIR----DDGITVFLVE 190
Cdd:PRK13409 495 AIRriaeEREATALVVD 511
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
17-174 |
5.83e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.86 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdISELPTHAIMRK---------GLAISP----- 82
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-VAYVPQQAWIQNdslrenilfGKALNEkyyqq 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 83 --EGRRVFPDLNVLEnlqmGGfflNREEI-EAGLEhvfelfprlreratqrsglMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:TIGR00957 733 vlEACALLPDLEILP----SG---DRTEIgEKGVN-------------------LSGGQKQRVSLARAVYSNADIYLFDD 786
|
170
....*....|....*
gi 648465099 160 PTLGLAPLIIEQIFE 174
Cdd:TIGR00957 787 PLSAVDAHVGKHIFE 801
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
134-212 |
1.15e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 45.62 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 134 MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDD-GITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
134-161 |
1.15e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 45.70 E-value: 1.15e-05
10 20
....*....|....*....|....*...
gi 648465099 134 MSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPT 189
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
17-174 |
1.44e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 44.85 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdiselpthaimrkgLAISPEGRRVFPDlNVLEN 96
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------------ISFSSQFSWIMPG-TIKEN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 97 LQMG---GFFLNREEIEA-GLEHVFELFPRLRERATQRSGL-MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQ 171
Cdd:cd03291 118 IIFGvsyDEYRYKSVVKAcQLEEDITKFPEKDNTVLGEGGItLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKE 197
|
...
gi 648465099 172 IFE 174
Cdd:cd03291 198 IFE 200
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
16-211 |
1.45e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 45.27 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIhfmgeDISELPTHAIMRKGLaispEGRrvfpdLNVLE 95
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAISSGL----NGQ-----LTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQMGGFF--LNREEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEptlglAPLIIEQIF 173
Cdd:PRK13545 105 NIELKGLMmgLTKEKIKEIIPEIIE-FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE-----ALSVGDQTF 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648465099 174 -----EIIKTIRDDGITVFLVEQNAN-------KALQIaDRGYVLETGRI 211
Cdd:PRK13545 179 tkkclDKMNEFKEQGKTIFFISHSLSqvksfctKALWL-HYGQVKEYGDI 227
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
17-167 |
1.63e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.01 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGN-PRV----------RTGSihfmGEDISELPTHaimrkglaISPEGR 85
Cdd:PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDhPQGysndltlfgrRRGS----GETIWDIKKH--------IGYVSS 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 RVFPDLNV---LENLQMGGFFlnrEEIeaGL-EHVFElfpRLRERATQ---RSGL-----------MSGGEQQMLAIGRA 147
Cdd:PRK10938 344 SLHLDYRVstsVRNVILSGFF---DSI--GIyQAVSD---RQQKLAQQwldILGIdkrtadapfhsLSWGQQRLALIVRA 415
|
170 180
....*....|....*....|
gi 648465099 148 LMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK10938 416 LVKHPTLLILDEPLQGLDPL 435
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
17-159 |
2.15e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 43.71 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDISELP----THAIMRKGLAIspegrrvfpDLN 92
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAkpycTYIGHNLGLKL---------EMT 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648465099 93 VLENLQMGGFFLNREEIEAGLEHVFELFPRLRERATQrsglMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:PRK13541 87 VFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYS----LSSGMQKIVAIARLIACQSDLWLLDE 149
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
23-186 |
2.55e-05 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 43.68 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 23 HIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEDIselpTHAIMRKGLAISPEGRRVFPDLNVLENLQmggf 102
Cdd:PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA----TRGDRSRFMAYLGHLPGLKADLSTLENLH---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 103 FLNreeieaGLEHvfelfprLRERATQRSGL---------------MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPL 167
Cdd:PRK13543 105 FLC------GLHG-------RRAKQMPGSALaivglagyedtlvrqLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
170 180
....*....|....*....|
gi 648465099 168 IIEQIFEIIKT-IRDDGITV 186
Cdd:PRK13543 172 GITLVNRMISAhLRGGGAAL 191
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
135-161 |
2.81e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 44.34 E-value: 2.81e-05
10 20
....*....|....*....|....*..
gi 648465099 135 SGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPT 191
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
17-172 |
3.51e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.38 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLST------ICGnprvrtGSIHFMGEDIS-----ELpthaimRKGLAISPEGR 85
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTfmrmveVCG------GEIRVNGREIGayglrEL------RRQFSMIPQDP 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 86 RVFpDLNVLENLQMggfFL--NREEIEAGLEHVfelfpRLRER-ATQRSGL----------MSGGEQQMLAIGRALMSKP 152
Cdd:PTZ00243 1394 VLF-DGTVRQNVDP---FLeaSSAEVWAALELV-----GLRERvASESEGIdsrvleggsnYSVGQRQLMCMARALLKKG 1464
|
170 180
....*....|....*....|.
gi 648465099 153 R-MLLLDEPTLGLAPLIIEQI 172
Cdd:PTZ00243 1465 SgFILMDEATANIDPALDRQI 1485
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
109-209 |
6.07e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 42.99 E-value: 6.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 109 IEAGLEHvFELFPRLRE--RATQRSGL-----------MSGGEQQMLAIGRALmSKP---RML-LLDEPTLGLAPLIIEQ 171
Cdd:cd03271 133 VEEALEF-FENIPKIARklQTLCDVGLgyiklgqpattLSGGEAQRIKLAKEL-SKRstgKTLyILDEPTTGLHFHDVKK 210
|
90 100 110
....*....|....*....|....*....|....*...
gi 648465099 172 IFEIIKTIRDDGITVFLVEQNANkALQIADrgYVLETG 209
Cdd:cd03271 211 LLEVLQRLVDKGNTVVVIEHNLD-VIKCAD--WIIDLG 245
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
15-212 |
9.27e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 42.81 E-value: 9.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 15 QALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICG----NPRVRTGSIHFMGEDISELPTHAimRKGLaISPEGRRVFPD 90
Cdd:PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGlidyPGRVMAEKLEFNGQDLQRISEKE--RRNL-VGAEVAMIFQD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 91 ----LN--------VLENLQM--GGfflNREEIEaglEHVFELF-----PRLRERATQRSGLMSGGEQQMLAIGRALMSK 151
Cdd:PRK11022 98 pmtsLNpcytvgfqIMEAIKVhqGG---NKKTRR---QRAIDLLnqvgiPDPASRLDVYPHQLSGGMSQRVMIAMAIACR 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648465099 152 PRMLLLDEPTLGLAPLIIEQIFEIIKTI-RDDGITVFLVEQNANKALQIADRGYVLETGRIV 212
Cdd:PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELqQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
19-159 |
1.55e-04 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 41.48 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFmgedisELPTHAIMRkglaispegrrvfpDLNVLENLQ 98
Cdd:COG2401 48 DLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCV------DVPDNQFGR--------------EASLIDAIG 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648465099 99 MGGFFLNREEI--EAGLEHVFELFPRLREratqrsglMSGGEQQMLAIGRALMSKPRMLLLDE 159
Cdd:COG2401 108 RKGDFKDAVELlnAVGLSDAVLWLRRFKE--------LSTGQKFRFRLALLLAERPKLLVIDE 162
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
134-209 |
3.15e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.54 E-value: 3.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648465099 134 MSGGEQQMLAIGRALMSK---PRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNANkALQIADrgYVLETG 209
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD-VIKTAD--YIIDLG 905
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
16-211 |
3.48e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 40.57 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 16 ALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHFMGEdISELPTHAimrkGLaispEGRrvfpdLNVLE 95
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-VSVIAISA----GL----SGQ-----LTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 96 NLQ-----MGgffLNREEIEAGLEHVFElFPRLRERATQRSGLMSGGEQQMLAIGRALMSKPRMLLLDEP-TLG---LAP 166
Cdd:PRK13546 105 NIEfkmlcMG---FKRKEIKAMTPKIIE-FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVGdqtFAQ 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648465099 167 LIIEQIFEiiktIRDDGITVFLVEQNANKALQIADRGYVLETGRI 211
Cdd:PRK13546 181 KCLDKIYE----FKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
130-232 |
4.73e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.77 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 130 RSGLMSGGEQQMLA----IGRALMSKprMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLVEQNaNKALQIADR--- 202
Cdd:TIGR00630 485 AAGTLSGGEAQRIRlatqIGSGLTGV--LYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHD-EDTIRAADYvid 561
|
90 100 110
....*....|....*....|....*....|....
gi 648465099 203 ---GYVLETGRIVLHDTGANLLLN-DQVGKAYLG 232
Cdd:TIGR00630 562 igpGAGEHGGEVVASGTPEEILANpDSLTGQYLS 595
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
19-191 |
5.41e-04 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 40.50 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICG-----NPRV---RTGSIHFmgediseLPTHAIMRKGL----AISPEG-- 84
Cdd:TIGR00954 470 SLSFEVPSGNNLLICGPNGCGKSSLFRILGElwpvyGGRLtkpAKGKLFY-------VPQRPYMTLGTlrdqIIYPDSse 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 85 ---RRVFPD---LNVLENLQMGgFFLNREeieAGLEHVFELfprlreratqrSGLMSGGEQQMLAIGRALMSKPRMLLLD 158
Cdd:TIGR00954 543 dmkRRGLSDkdlEQILDNVQLT-HILERE---GGWSAVQDW-----------MDVLSGGEKQRIAMARLFYHKPQFAILD 607
|
170 180 190
....*....|....*....|....*....|...
gi 648465099 159 EPTLGLAPLIIEQIFEIiktIRDDGITVFLVEQ 191
Cdd:TIGR00954 608 ECTSAVSVDVEGYMYRL---CREFGITLFSVSH 637
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
19-161 |
5.62e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 40.49 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 19 DVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSIHfMGE-------DISelpthaimRKGLAispegrrvfPDL 91
Cdd:PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK-IGEtvklayvDQS--------RDALD---------PNK 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 92 NV-------LENLQMGGFflnreEIEAglehvfelfprlreRA------------TQRSGLMSGGEQQMLAIGRALMSKP 152
Cdd:PRK11819 404 TVweeisggLDIIKVGNR-----EIPS--------------RAyvgrfnfkggdqQKKVGVLSGGERNRLHLAKTLKQGG 464
|
....*....
gi 648465099 153 RMLLLDEPT 161
Cdd:PRK11819 465 NVLLLDEPT 473
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
134-164 |
1.47e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 39.63 E-value: 1.47e-03
10 20 30
....*....|....*....|....*....|.
gi 648465099 134 MSGGEQQMLAIGRALMSKPRMLLLDEPTLGL 164
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSL 610
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
134-207 |
1.50e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 38.32 E-value: 1.50e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648465099 134 MSGGEQQMLAIGRALMSKPRMLLLDEPTlglAPLIIEQIFEIIKTIR----DDGITVFLVEQNANKALQIADRGYVLE 207
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPS---AYLDIEQRLNAARAIRrlseEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
17-188 |
2.12e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 38.44 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 17 LHDVSLHIDEGeIVTLIGSNGAGKTTTL---STICGNPRVRTGSIH--FMGEDISELPTH----------AIMRKGL--- 78
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILealRLLLGPSSSRKFDEEdfYLGDDPDLPEIEieltfgsllsRLLRLLLkee 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 79 ---AISPEGRRVFPDLN-VLENLQMggfFLNREEIEAGLEHVFELFPRLRERATQRSGL--------------MSGGEQQ 140
Cdd:COG3593 93 dkeELEEALEELNEELKeALKALNE---LLSEYLKELLDGLDLELELSLDELEDLLKSLslriedgkelpldrLGSGFQR 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648465099 141 M--LAIGRALM-----SKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFL 188
Cdd:COG3593 170 LilLALLSALAelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVII 224
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-68 |
2.42e-03 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 38.23 E-value: 2.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648465099 1 MLKLDSINSGYGAIQALHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNP--RVRTGSIHFMGEDISEL 68
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLEL 70
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
17-58 |
4.89e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 37.84 E-value: 4.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 648465099 17 LHDVSLHIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSI 58
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
134-189 |
6.03e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 37.30 E-value: 6.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 648465099 134 MSGGEQQMLAIGRALMSKPRMLLLDEPTLGLAPLIIEQIFEIIKTIRDDGITVFLV 189
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-49 |
7.29e-03 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 37.08 E-value: 7.29e-03
10 20 30
....*....|....*....|....*....|
gi 648465099 20 VSLHIDEGEIVTLIGSNGAGKTTTLSTICG 49
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTG 380
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
121-161 |
8.34e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 37.15 E-value: 8.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 648465099 121 PRLRERATQRsglMSGGEQQMLAIGRALMSKPRMLLLDEPT 161
Cdd:PLN03073 335 PEMQVKATKT---FSGGWRMRIALARALFIEPDLLLLDEPT 372
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
13-58 |
9.12e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 36.45 E-value: 9.12e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 648465099 13 AIQALHDVSL-----HIDEGEIVTLIGSNGAGKTTTLSTICGNPRVRTGSI 58
Cdd:PRK01889 176 AVSALDGEGLdvlaaWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226
|
|
| |
