|
Name |
Accession |
Description |
Interval |
E-value |
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
19-266 |
1.94e-123 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 351.65 E-value: 1.94e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD 98
Cdd:COG1120 4 AENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYVPQE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG1120 84 PPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVIS 258
Cdd:COG1120 164 PTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEARVIE 243
|
....*...
gi 648497063 259 APNLPYPL 266
Cdd:COG1120 244 DPVTGRPL 251
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
8-270 |
2.09e-115 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 332.14 E-value: 2.09e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 8 QDPPRTAETFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERV 87
Cdd:PRK10575 3 EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 88 FARSVAYLPQDVTTGSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLI 167
Cdd:PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 168 AQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQ 247
Cdd:PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLE 242
|
250 260
....*....|....*....|...
gi 648497063 248 EIYGIDMDVISAPNLPYPLAYVC 270
Cdd:PRK10575 243 QIYGIPMGILPHPAGAAPVSFVY 265
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
20-263 |
7.20e-97 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 284.28 E-value: 7.20e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDV 99
Cdd:COG4604 5 KNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILRQEN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGRYPWHGalGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:COG4604 85 HINSRLTVRELVAFGRFPYSK--GRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 180 TAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVISA 259
Cdd:COG4604 163 LNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEVEEI 242
|
....
gi 648497063 260 PNLP 263
Cdd:COG4604 243 DGKR 246
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
31-260 |
1.41e-90 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 268.42 E-value: 1.41e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVREL 110
Cdd:PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVREL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:PRK11231 97 VAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 191 VLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVISAP 260
Cdd:PRK11231 177 LMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEP 245
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
19-266 |
1.03e-86 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 258.93 E-value: 1.03e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD 98
Cdd:PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVGCGRYPWhgalGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQ------DAR 172
Cdd:PRK13548 85 SSLSFPFTVEEVVAMGRAPH----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgPPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGI 252
Cdd:PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVYGA 240
|
250
....*....|....
gi 648497063 253 DMDVISAPNLPYPL 266
Cdd:PRK13548 241 DVLVQPHPETGAPL 254
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
19-266 |
4.90e-85 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 254.65 E-value: 4.90e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD 98
Cdd:COG4559 4 AENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLPQH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVGCGRYPWhgalGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQ-------DA 171
Cdd:COG4559 84 SSLAFPFTVEEVVALGRAPH----GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdgGP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 172 RCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYG 251
Cdd:COG4559 160 RWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVYG 238
|
250
....*....|....*
gi 648497063 252 IDMDVISAPNLPYPL 266
Cdd:COG4559 239 ADLRVLAHPEGGCPQ 253
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
19-235 |
1.37e-80 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 240.42 E-value: 1.37e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQd 98
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgsemtvrelvgcgrypwhgalgrftkndegkveeALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:cd03214 81 -------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
20-258 |
1.55e-77 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 234.98 E-value: 1.55e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfarsvAYLPQDV 99
Cdd:COG1121 10 ENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRI-----GYVPQRA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSE--MTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:COG1121 85 EVDWDfpITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRgRVVASGTPSAILAPNTLQEIYGIDMDVI 257
Cdd:COG1121 165 EPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNR-GLVAHGPPEEVLTPENLSRAYGGPVALL 242
|
.
gi 648497063 258 S 258
Cdd:COG1121 243 A 243
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
19-235 |
1.20e-66 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 206.23 E-value: 1.20e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfarsvAYLPQ- 97
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI-----GYVPQr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 -DVTTGSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:cd03235 77 rSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRgRVVASG 235
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
31-266 |
2.42e-66 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 207.15 E-value: 2.42e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVREL 110
Cdd:PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:PRK10253 102 VARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 191 VLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVISAPNLPYPL 266
Cdd:PRK10253 182 LLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPL 257
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
31-260 |
1.08e-61 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 199.68 E-value: 1.08e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVREL 110
Cdd:PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:PRK09536 98 VEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 191 VLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVISAP 260
Cdd:PRK09536 178 TLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDP 246
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
27-242 |
4.68e-59 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 187.15 E-value: 4.68e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD-----Vtt 101
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLVFQNpddqlF-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 gsEMTVRELVgcgrypwhgALG----RFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:COG1122 90 --APTVEEDV---------AFGpenlGLPREEiRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1122 159 DEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
28-257 |
5.40e-57 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 182.36 E-value: 5.40e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFaRSVAYLPQDVTTGSEMTV 107
Cdd:COG4555 13 KVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREAR-RQIGVLPDERGLYDRLTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgRYpwHGAL-GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:COG4555 92 RENI---RY--FAELyGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVI 257
Cdd:COG4555 167 ARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEENLEDAFVALI 236
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
28-250 |
1.02e-56 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.42 E-value: 1.02e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARsVAYLPQDVTTGSEMTV 107
Cdd:COG1131 12 DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRR-IGYVPQEPALYPDLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgRYpwHGALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:COG1131 91 RENL---RF--FARLYGLPRKEaRERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILApNTLQEIY 250
Cdd:COG1131 166 ARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA-RLLEDVF 227
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
27-250 |
4.15e-55 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 177.76 E-value: 4.15e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS---YGNRDLRTYGERVFARSVAYLPQDVTTGS 103
Cdd:cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLidgTDINKLKGKALRQLRRQIGMIFQQFNLIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGCGRYP----WHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:cd03256 92 RLSVLENVLSGRLGrrstWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 180 TAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPnTLQEIY 250
Cdd:cd03256 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE-VLDEIY 241
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
31-242 |
1.13e-54 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 183.95 E-value: 1.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDVTTgS---E 104
Cdd:COG1123 280 AVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRrslRELRRRVQMVFQDPYS-SlnpR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVGcgrYPWHgALGRFTKND-EGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:COG1123 359 MTVGDIIA---EPLR-LHGLLSRAErRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSA 434
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 183 LDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1123 435 LDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFA 494
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
27-242 |
6.68e-52 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 169.60 E-value: 6.68e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSE-- 104
Cdd:COG1124 16 RRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRVQMVFQDPYASLHpr 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVG-----CGRypwhgalgrftKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG1124 96 HTVDRILAeplriHGL-----------PDREERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPELLLLDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1124 165 PTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
17-231 |
7.65e-51 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 165.76 E-value: 7.65e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 17 FVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLP 96
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 QDVTTGsEMTVRELVgcgRYPWHGALGRFtknDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:COG4619 81 QEPALW-GGTVRDNL---PFPFQLRERKF---DRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
31-230 |
2.49e-50 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 164.56 E-value: 2.49e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD-----VTTgsem 105
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNpddqfFGP---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELV--GCGRypwhgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:cd03225 92 TVEEEVafGLEN------LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 184 DVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGR 230
Cdd:cd03225 166 DPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
29-249 |
3.99e-50 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 172.01 E-value: 3.99e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA---GSISYGNRDLRTYGERVFARSVAYLPQD------- 98
Cdd:COG1123 19 VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRGRRIGMVFQDpmtqlnp 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEmtVRELVGCGRYPWHGALGRftkndegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG1123 99 VTVGDQ--IAEALENLGLSRAEARAR--------VLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA-PNTLQEI 249
Cdd:COG1123 169 PTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAaPQALAAV 240
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
32-253 |
4.56e-50 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 165.01 E-value: 4.56e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVrelv 111
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMA-GLLPGQGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPV---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 gcgrypWHG-ALGRFTKNDEGKVEEAL----RATYIEKFADRIVGTLSGGERQRAWIAMLIAQ-------DARCLLLDEP 179
Cdd:COG4138 87 ------FQYlALHQPAGASSEAVEQLLaqlaEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 180 TAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGID 253
Cdd:COG4138 161 MNSLDVAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVK 233
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
32-242 |
1.39e-49 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 163.38 E-value: 1.39e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARS-VAYLPQDVTTGSEMTVREL 110
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIGRTFQIPRLFPELTVLEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPWHGALGRFTKNDEG------KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:cd03219 96 VMVAAQARTGSGLLLARARREereareRAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:cd03219 176 PEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
19-265 |
5.27e-49 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 163.07 E-value: 5.27e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA--------GSISYGNRDLRTYGERVFAR 90
Cdd:PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRLAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 91 SVAYLPQDVTTGSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQ- 169
Cdd:PRK13547 84 LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQl 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 170 --------DARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL 241
Cdd:PRK13547 164 wpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
250 260
....*....|....*....|....
gi 648497063 242 APNTLQEIYGIDMDVISAPNLPYP 265
Cdd:PRK13547 244 TPAHIARCYGFAVRLVDAGDGVPP 267
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
27-218 |
2.25e-48 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 158.55 E-value: 2.25e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrtygERVFARSVAYLPQ--DVTTGSE 104
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV-----------RRAGGARVAYVPQrsEVPDSLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:NF040873 72 LTVRDLVAMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLD 151
|
170 180 190
....*....|....*....|....*....|....
gi 648497063 185 VAHQIEVLSLVRRLAHElGSSVVIVLHDINMAAR 218
Cdd:NF040873 152 AESRERIIALLAEEHAR-GATVVVVTHDLELVRR 184
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
28-250 |
5.06e-47 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 157.51 E-value: 5.06e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRD---LRTYgeRVFARSVAYLPQDVTTGSE 104
Cdd:COG0411 16 GLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDitgLPPH--RIARLGIARTFQNPRLFPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRE--LVGC---GRYPWHGALGRFTKNDEG------KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:COG0411 94 LTVLEnvLVAAharLGRGLLAALLRLPRARREereareRAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:COG0411 174 LLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRADPRVIEAY 250
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
30-231 |
1.09e-46 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 155.34 E-value: 1.09e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER---VF-ARSVAYLPQDVTTGSEM 105
Cdd:cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKelaAFrRRHIGFVFQSFNLLPDL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVgcgRYPWHGAlGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:cd03255 98 TALENV---ELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648497063 186 AHQIEVLSLVRRLAHELGSSVVIVLHDINMaARFCDRIHALKRGRV 231
Cdd:cd03255 174 ETGKEVMELLRELNKEAGTTIVVVTHDPEL-AEYADRIIELRDGKI 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
29-235 |
2.36e-46 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 154.59 E-value: 2.36e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER---VFARSVAYLPQDVTTgS-- 103
Cdd:cd03257 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRlrkIRRKEIQMVFQDPMS-Sln 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 -EMTVRELVgcgrypWHGALGRFTKNDEGKVEEALRATYI-----EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:cd03257 97 pRMTIGEQI------AEPLRIHGKLSKKEARKEAVLLLLVgvglpEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
30-233 |
1.03e-45 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 152.89 E-value: 1.03e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA----RSVAYLPQDVTTGSEM 105
Cdd:COG1136 22 TALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELArlrrRHIGFVFQFFNLLPEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVgcgRYPWHGAlGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:COG1136 102 TALENV---ALPLLLA-GVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDS 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 186 AHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVA 233
Cdd:COG1136 178 KTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRIVS 224
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
27-242 |
1.28e-45 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 162.70 E-value: 1.28e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVT--TGse 104
Cdd:COG2274 486 DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGVVLQDVFlfSG-- 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFA-------DRIVG----TLSGGERQRAWIAMLIAQDARC 173
Cdd:COG2274 564 -TIRENI---------TLGDPDATDE-EIIEAARLAGLHDFIealpmgyDTVVGeggsNLSGGQRQRLAIARALLRNPRI 632
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMaARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG2274 633 LILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLST-IRLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
19-224 |
2.77e-45 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 151.09 E-value: 2.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERvFARSVAYLPQD 98
Cdd:COG4133 5 AENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED-YRRRLAYLGHA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVGCgrypWHGALGRFTknDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG4133 84 DGLKPELTVRENLRF----WAALYGLRA--DREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDiNMAARFCDRIH 224
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLAR-GGAVLLTTHQ-PLELAAARVLD 201
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
32-181 |
2.34e-44 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 147.02 E-value: 2.34e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVRELV 111
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 112 GCGRYPWhgalGRFTKNDEGKVEEALRATYIEKFADRIVG----TLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:pfam00005 81 RLGLLLK----GLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
36-252 |
1.08e-43 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 147.98 E-value: 1.08e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 36 SLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYgeRVFARSVAYLPQDVTTGSEMTVRELVGCGR 115
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTAL--PPAERPVSMLFQENNLFPHLTVAQNIGLGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 116 YPwhgALgRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLV 195
Cdd:COG3840 97 RP---GL-KLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLV 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 196 RRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNT---LQEIYGI 252
Cdd:COG3840 173 DELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPppaLAAYLGI 232
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
27-244 |
1.08e-43 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 155.69 E-value: 1.08e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVT--TGse 104
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWVPQNPYlfAG-- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADR-------IVG----TLSGGERQRAWIAMLIAQDARC 173
Cdd:COG4988 426 -TIRENL---------RLGRPDASDE-ELEAALEAAGLDEFVAAlpdgldtPLGeggrGLSGGQAQRLALARALLRDAPL 494
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:COG4988 495 LLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
19-230 |
1.80e-43 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 145.08 E-value: 1.80e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQd 98
Cdd:cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgsemtvrelvgcgrypwhgalgrftkndegkveealratyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:cd00267 81 ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGR 230
Cdd:cd00267 107 PTSGLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
31-237 |
1.07e-42 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 144.96 E-value: 1.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFaRSVAYLPQDVTTGSEMTVREL 110
Cdd:cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR-QSLGYCPQFDALFDELTVREH 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VgcgRYpwHGALGRFTKNDEGK-VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQI 189
Cdd:cd03263 96 L---RF--YARLKGLPKSEIKEeVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 190 EVLSLVRRLAHelGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTP 237
Cdd:cd03263 171 AIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP 216
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
28-242 |
1.22e-42 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 145.51 E-value: 1.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER---VFARSVAYLPQDvttG-- 102
Cdd:COG1127 17 DRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelyELRRRIGMLFQG---Gal 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 -SEMTVRELVGcgrYPwhgaLGRFTKNDEG----KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:COG1127 94 fDSLTVFENVA---FP----LREHTDLSEAeireLVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1127 167 EPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
20-235 |
2.22e-42 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 144.20 E-value: 2.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERvfARSVAYLPQDV 99
Cdd:cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGRYpwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:cd03259 82 ALFPHLTVAENIAFGLK----LRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 180 TAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
27-242 |
2.59e-42 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 144.57 E-value: 2.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDVTTGS 103
Cdd:cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaelYRLRRRMGMLFQSGALFD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGcgrYPwhgaLGRFTKNDEG----KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:cd03261 91 SLTVFENVA---FP----LREHTRLSEEeireIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 180 TAALD--VAHQIEvlSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:cd03261 164 TAGLDpiASGVID--DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
28-242 |
3.07e-42 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 144.11 E-value: 3.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL-RTYGERVFARSVAYLPQDVTTGSEMT 106
Cdd:cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDItGLPPHERARAGIGYVPEGRRIFPELT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRE--LVGCGRYPwhgalgrftkndEGKVEEALRATY-----IEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:cd03224 92 VEEnlLLGAYARR------------RAKRKARLERVYelfprLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 180 TAALdvAHQI--EVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:cd03224 160 SEGL--APKIveEIFEAIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
28-231 |
3.16e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 142.15 E-value: 3.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfARSVAYLPQDVTTGSEMTV 107
Cdd:cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEV-KRRIGYLPEEPSLYENLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgrypwhgalgrftkndegkveealratyiekfadrivgTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:cd03230 91 RENL----------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 648497063 188 QIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:cd03230 131 RREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
27-242 |
5.50e-42 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 151.09 E-value: 5.50e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVT--TGse 104
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQDTFlfSG-- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADR-------IVG----TLSGGERQRAWIAMLIAQDARC 173
Cdd:COG1132 429 -TIRENI---------RYGRPDATDE-EVEEAAKAAQAHEFIEAlpdgydtVVGergvNLSGGQRQRIAIARALLKDPPI 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1132 498 LILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLS-TIRNADRILVLDDGRIVEQGTHEELLA 563
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
27-230 |
7.27e-42 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 141.37 E-value: 7.27e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSeMT 106
Cdd:cd03228 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRElvgcgrypwhgalgrftkNdegkveealratyIekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:cd03228 92 IRE------------------N-------------I----------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 648497063 187 HQIEVLSLVRRLAHelGSSVVIVLHDINMaARFCDRIHALKRGR 230
Cdd:cd03228 131 TEALILEALRALAK--GKTVIVIAHRLST-IRDADRIIVLDDGR 171
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
28-230 |
1.42e-41 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 140.79 E-value: 1.42e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERV--FARSVAYLPQDVTTGSEM 105
Cdd:cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELppLRRRIGMVFQDFALFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCGrypwhgalgrftkndegkveealratyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:cd03229 92 TVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 186 AHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGR 230
Cdd:cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
30-250 |
2.31e-41 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 142.04 E-value: 2.31e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRD---LRTYgERVfARSVAYLPQDVTTGSEMT 106
Cdd:COG0410 17 HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDitgLPPH-RIA-RLGIGYVPEGRRIFPSLT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRE-LVgcgrypwhgaLGRFTKNDEGKVEEALRATY-----IEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:COG0410 95 VEEnLL----------LGAYARRDRAEVRADLERVYelfprLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPS 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 181 AALdvAHQI--EVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:COG0410 165 LGL--APLIveEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAY 233
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
20-257 |
2.45e-41 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 142.53 E-value: 2.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPsagsiSYGNrDLRTYGER-----VFA--RSV 92
Cdd:COG1119 7 RNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPP-----TYGN-DVRLFGERrggedVWElrKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AY----LPQDVTtgSEMTVRELVGCGRYpwhGALGRF---TKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAM 165
Cdd:COG1119 81 GLvspaLQLRFP--RDETVLDVVLSGFF---DSIGLYrepTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIAR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 166 LIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNT 245
Cdd:COG1119 156 ALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSEN 235
|
250
....*....|..
gi 648497063 246 LQEIYGIDMDVI 257
Cdd:COG1119 236 LSEAFGLPVEVE 247
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
32-246 |
3.53e-41 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 144.90 E-value: 3.53e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYgERVFARSVAYLPQDvttgseMTVRELV 111
Cdd:COG1118 18 LDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTN-LPPRERRVGFVFQHyalfphMTVAENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCG-RypwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD--VAHQ 188
Cdd:COG1118 97 AFGlR-----VRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDakVRKE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 189 IEvlSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL-APNTL 246
Cdd:COG1118 172 LR--RWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYdRPATP 228
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
5-244 |
8.49e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 147.99 E-value: 8.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 5 PPTQDPPRTAETFVAENIGLLIEGNE--ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRT 82
Cdd:COG4987 322 PAEPAPAPGGPSLELEDVSFRYPGAGrpVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRD 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 83 YGERVFARSVAYLPQDV---TTgsemTVRE--LVGCGrypwhGAlgrftknDEGKVEEALRATYIEKFADR-------IV 150
Cdd:COG4987 402 LDEDDLRRRIAVVPQRPhlfDT----TLREnlRLARP-----DA-------TDEELWAALERVGLGDWLAAlpdgldtWL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 151 G----TLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARFcDRIHAL 226
Cdd:COG4987 466 GeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLERM-DRILVL 542
|
250
....*....|....*...
gi 648497063 227 KRGRVVASGTPSAILAPN 244
Cdd:COG4987 543 EDGRIVEQGTHEELLAQN 560
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
35-253 |
1.31e-40 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 140.45 E-value: 1.31e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVrelvgcg 114
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMA-GLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 rypWHG-ALGRFTKNDEGKVEEAL----RATYIEKFADRIVGTLSGGERQRAWIAMLIAQ-------DARCLLLDEPTAA 182
Cdd:PRK03695 87 ---FQYlTLHQPDKTRTEAVASALnevaEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNS 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 183 LDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGID 253
Cdd:PRK03695 164 LDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVN 233
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
27-232 |
1.98e-40 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 138.93 E-value: 1.98e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDlRTYGERVfaRSVAYLPQDVTT--GSE 104
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP-IKAKERR--KSIGYVMQDVDYqlFTD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRE--LVGCGRYPwhgalgrftkNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:cd03226 88 -SVREelLLGLKELD----------AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648497063 183 LDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:cd03226 157 LDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
19-235 |
3.14e-39 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 135.78 E-value: 3.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGeVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARsVAYLPQD 98
Cdd:cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR-IGYLPQE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVgcgRYpwHGALGRFTKNDEGK-VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:cd03264 81 FGVYPNFTVREFL---DY--IAWLKGIPSKEVKArVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 178 EPTAALDVAHQIEvlslVRRLAHELGSSVVIVL--HDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03264 156 EPTAGLDPEERIR----FRNLLSELGEDRIVILstHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
31-253 |
1.02e-38 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 136.02 E-value: 1.02e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTyGERVFA--RSVAYLPQD-----VTTgs 103
Cdd:TIGR04520 17 ALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD-EENLWEirKKVGMVFQNpdnqfVGA-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 emTVRELVgcgrypwhgALG---RFTKNDEGK--VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:TIGR04520 94 --TVEDDV---------AFGlenLGVPREEMRkrVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILA-PNTLQEIyGID 253
Cdd:TIGR04520 163 ATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGTPREIFSqVELLKEI-GLD 236
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
17-240 |
2.22e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 134.23 E-value: 2.22e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 17 FVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR-----QLVPSAGSISYGNRDLRTYGERVFA-- 89
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 90 RSVAYLPQDvTTGSEMTVRELVGCGryPW-HGALGRftKNDEGKVEEALRATYI-EKFADRIVGT-LSGGERQRAWIAML 166
Cdd:cd03260 81 RRVGMVFQK-PNPFPGSIYDNVAYG--LRlHGIKLK--EELDERVEEALRKAALwDEVKDRLHALgLSGGQQQRLCLARA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 167 IAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELgsSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
28-246 |
2.53e-38 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 134.28 E-value: 2.53e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTV 107
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND-TI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgRYpwhgalGRFTKNDEgKVEEALRA----TYIEKFADR---IVG----TLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:cd03253 92 GYNI---RY------GRPDATDE-EVIEAAKAaqihDKIMRFPDGydtIVGerglKLSGGEKQRVAIARAILKNPPILLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPNTL 246
Cdd:cd03253 162 DEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAKGGL 228
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
18-237 |
6.07e-38 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 132.88 E-value: 6.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 18 VAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfARSVAYLPQ 97
Cdd:cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV-RRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 DVTTGSEMTVRELVgcgryPWHGALGRFtKNDEGK--VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:cd03265 81 DLSVDDELTGWENL-----YIHARLYGV-PGAERRerIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTP 237
Cdd:cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
34-235 |
1.53e-37 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 131.46 E-value: 1.53e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTygERVFARSVAYLPQDVTTGSEMTVRELVGC 113
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 114 GRYPwhgALgRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLS 193
Cdd:cd03298 94 GLSP---GL-KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648497063 194 LVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03298 170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
32-242 |
2.41e-37 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 134.03 E-value: 2.41e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVP----SAGSISYGNRDLRTYGERVF----ARSVAYLPQD----- 98
Cdd:COG0444 21 VDGVSFDVRRGETLGLVGESGSGKSTLARAILG-LLPppgiTSGEILFDGEDLLKLSEKELrkirGREIQMIFQDpmtsl 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 --VttgseMTVRELVGcgrYPW--HGALGRftKNDEGKVEEALRATYI---EKFADRIVGTLSGGERQRAWIAMLIAQDA 171
Cdd:COG0444 100 npV-----MTVGDQIA---EPLriHGGLSK--AEARERAIELLERVGLpdpERRLDRYPHELSGGMRQRVMIARALALEP 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 172 RCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG0444 170 KLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFE 240
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
28-235 |
3.79e-37 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 130.94 E-value: 3.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA---RSVAYLPQDVTTGSE 104
Cdd:COG2884 14 GREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrRRIGVVFQDFRLLPD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVgcgrypwhgAL-----GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:COG2884 94 RTVYENV---------ALplrvtGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 180 TAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:COG2884 165 TGNLDPETSWEIMELLEEI-NRRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
32-254 |
6.95e-37 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 131.68 E-value: 6.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR--------DLRTYGERVFARsvaylPQDVTTGS 103
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVRRQVGMVFQN-----PDNQFVGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 emTVRELVgcgrypwhgALG---RFTKNDE--GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:PRK13635 98 --TVQDDV---------AFGlenIGVPREEmvERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPNT-LQEIyGIDM 254
Cdd:PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHmLQEI-GLDV 241
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
32-240 |
1.63e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 129.77 E-value: 1.63e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERvfARSVAYLPQDVTTGSEMTVRELV 111
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRYPWHGAlGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:cd03296 96 AFGLRVKPRS-ERPPEAEiRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648497063 191 VLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:cd03296 175 LRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
28-246 |
2.14e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 132.14 E-value: 2.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRtyGERVFARSVAYLPQDvttgseMTV 107
Cdd:COG3842 17 DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVT--GLPPEKRNVGMVFQDyalfphLTV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCG-RypwhgaLGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:COG3842 95 AENVAFGlR------MRGVPKAEiRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 186 AHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL-APNTL 246
Cdd:COG3842 169 KLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIYeRPATR 230
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
32-253 |
8.81e-36 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 127.80 E-value: 8.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVRELV 111
Cdd:cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCgrYPwhGALGRFTKNDEGKVEEALRATYIE--KFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQI 189
Cdd:cd03295 97 AL--VP--KLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 190 EVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL---APNTLQEIYGID 253
Cdd:cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILrspANDFVAEFVGAD 239
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
34-242 |
1.33e-35 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 130.22 E-value: 1.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVF----ARSVAYLPQDVTTGSEMTVRE 109
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFlpphRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 --LVGCGRYPWHGALGRFtkndegkvEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:COG4148 97 nlLYGRKRAPRAERRISF--------DEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLAR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG4148 169 KAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLS 223
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
28-233 |
8.00e-35 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 125.97 E-value: 8.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfarsvAYLPQdvttgsE--- 104
Cdd:COG1116 23 GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR-----GVVFQ------Epal 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 ---MTVRELVGCGRypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:COG1116 92 lpwLTVLDNVALGL----ELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648497063 182 ALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKR--GRVVA 233
Cdd:COG1116 168 ALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIVE 221
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
28-241 |
1.45e-34 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 124.37 E-value: 1.45e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ERvfaRSVAYLPQDVTTGSEMT 106
Cdd:cd03299 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPpEK---RDISYVPQNYALFPHMT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGCG----RYPwhgalgrfTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:cd03299 88 VYKNIAYGlkkrKVD--------KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 183 LDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL 241
Cdd:cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
32-235 |
1.79e-34 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 125.04 E-value: 1.79e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR-----DLRTYGE---RVFARSV-AYLPQDVTTG 102
Cdd:PRK11701 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEaerRRLLRTEwGFVHQHPRDG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 SEMTV-------RELVGCG-RYpwHGALgRFTKND-EGKVEEAlratyiekfADRI---VGTLSGGERQRAWIAMLIAQD 170
Cdd:PRK11701 102 LRMQVsaggnigERLMAVGaRH--YGDI-RATAGDwLERVEID---------AARIddlPTTFSGGMQQRLQIARNLVTH 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 171 ARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
30-233 |
7.22e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 122.20 E-value: 7.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGervfaRSVAYLPQDVTTGSEMTVRE 109
Cdd:cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVgcgrypwhgALG-RFTKNDEG----KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:cd03293 93 NV---------ALGlELQGVPKAeareRAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHAL--KRGRVVA 233
Cdd:cd03293 164 ALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVA 214
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
27-267 |
1.16e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 123.31 E-value: 1.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGS-EM 105
Cdd:PRK13647 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVfSS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCGryPWHGALGRftKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:PRK13647 96 TVWDDVAFG--PVNMGLDK--DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 186 AHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSaILApntlqeiygiDMDVISAPNLPYP 265
Cdd:PRK13647 172 RGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS-LLT----------DEDIVEQAGLRLP 239
|
..
gi 648497063 266 LA 267
Cdd:PRK13647 240 LV 241
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
29-235 |
1.46e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 121.54 E-value: 1.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVT--TGsemT 106
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTlfYG---T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFA-------DRIVG----TLSGGERQRAWIAMLIAQDARCLL 175
Cdd:cd03245 94 LRDNI---------TLGAPLADDE-RILRAAELAGVTDFVnkhpnglDLQIGergrGLSGGQRQAVALARALLNDPPILL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAArFCDRIHALKRGRVVASG 235
Cdd:cd03245 164 LDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVMDSGRIVADG 220
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
28-234 |
2.48e-33 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 119.07 E-value: 2.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARSVAylpqdvttgsemtv 107
Cdd:cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD-------GKEVSFASPR-------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 relvgcgrypwhgalgrftkndegkveEALRATyIEkfadrIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:cd03216 71 ---------------------------DARRAG-IA-----MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 188 QIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:cd03216 118 VERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
19-250 |
3.75e-33 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 120.73 E-value: 3.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYgeRVFARS---VAYL 95
Cdd:cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL--PMHKRArlgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 96 PQDVTTGSEMTVRELVGCgrypwhgALGRFTKNDEG---KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:cd03218 81 PQEASIFRKLTVEENILA-------VLEIRGLSKKEreeKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
30-242 |
5.73e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 120.38 E-value: 5.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDVTTGSEMT 106
Cdd:cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkelRKARRRIGMIFQHFNLLSSRT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGcgrYPWHgaLGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:cd03258 99 VFENVA---LPLE--IAGVPKAEiEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 186 AHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:cd03258 174 ETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1-242 |
7.54e-33 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 126.02 E-value: 7.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 1 MAMLPPTQDP---PRTAETFVAENIGLLIEGNE--ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY 75
Cdd:COG4618 312 LAAVPAEPERmplPRPKGRLSVENLTVVPPGSKrpILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 76 GNRDLRTYGERVFARSVAYLPQDVT--TGsemTVRElvgcgrypwhgALGRFTKNDEGKVEEALRAT----YIEKFA--- 146
Cdd:COG4618 392 DGADLSQWDREELGRHIGYLPQDVElfDG---TIAE-----------NIARFGDADPEKVVAAAKLAgvheMILRLPdgy 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 147 DRIVG----TLSGGERQRawIAMliaqdARCL-------LLDEPTAALDvaHQIEVlSLVRRLAH--ELGSSVVIVLHDI 213
Cdd:COG4618 458 DTRIGeggaRLSGGQRQR--IGL-----ARALygdprlvVLDEPNSNLD--DEGEA-ALAAAIRAlkARGATVVVITHRP 527
|
250 260
....*....|....*....|....*....
gi 648497063 214 NmAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG4618 528 S-LLAAVDKLLVLRDGRVQAFGPRDEVLA 555
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
30-242 |
7.54e-33 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 125.57 E-value: 7.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKS----SLLKMLARQLVPSAGSISYGNRDLRTYGER----VFARSVAYLPQDvtt 101
Cdd:COG4172 24 EAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSERelrrIRGNRIAMIFQE--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 gsEMT-----------VRELVGcgrypWHGALGRftKNDEGKVEEALRATYIEKFADRIVG---TLSGGERQRAWIAMLI 167
Cdd:COG4172 101 --PMTslnplhtigkqIAEVLR-----LHRGLSG--AAARARALELLERVGIPDPERRLDAyphQLSGGQRQRVMIAMAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 168 AQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG4172 172 ANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFA 246
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
34-242 |
1.49e-32 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 122.14 E-value: 1.49e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVF----ARSVAYLPQDVTTGSEMTVRE 109
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFlppeKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVgcgRYPWHGALGRFTKNDEGKVEEALRatyIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQI 189
Cdd:TIGR02142 95 NL---RYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648497063 190 EVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:TIGR02142 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-238 |
2.00e-32 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 119.05 E-value: 2.00e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 39 FPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISygnrdlrtygerVFARSVAYLPQDVTTGSEMTVRELVgcgrypw 118
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE------------IELDTVSYKPQYIKADYEGTVRDLL------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 119 HGALGRFTKNDEGKVEeALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRL 198
Cdd:cd03237 83 SSITKDFYTHPYFKTE-IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRF 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 648497063 199 AHELGSSVVIVLHDINMAARFCDRIhalkrgrVVASGTPS 238
Cdd:cd03237 162 AENNEKTAFVVEHDIIMIDYLADRL-------IVFEGEPS 194
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
28-244 |
5.79e-32 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 117.64 E-value: 5.79e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSeMTV 107
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFA-------DRIVG----TLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:cd03249 94 AENI---------RYGKPDATDE-EVEEAAKKANIHDFImslpdgyDTLVGergsQLSGGQKQRIAIARALLRNPKILLL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAheLGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:cd03249 164 DEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDELMAQK 228
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
19-231 |
6.84e-32 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 122.87 E-value: 6.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYgNRDLRtygervfarsVAYLPQD 98
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSI-PKGLR----------IGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVGCGRYPWHGALGRF----TKNDEGKVEEALRATYIEKFA-------------------------DRI 149
Cdd:COG0488 70 PPLDDDLTVLDTVLDGDAELRALEAELeeleAKLAEPDEDLERLAELQEEFEalggweaearaeeilsglgfpeedlDRP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 150 VGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDvahqIEVlslVRRLAHELGS---SVVIVLHD---INmaaRFCDRI 223
Cdd:COG0488 150 VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD----LES---IEWLEEFLKNypgTVLVVSHDryfLD---RVATRI 219
|
....*...
gi 648497063 224 HALKRGRV 231
Cdd:COG0488 220 LELDRGKL 227
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
37-252 |
6.91e-32 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 117.26 E-value: 6.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 37 LKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDlrtygERVFARSVAYLPQ--DVTTGSEMTVRELVGCG 114
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVPQrhEFAWDFPISVAHTVMSG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 RYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSL 194
Cdd:TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 195 VRRLAHElGSSVVIVLHDINMAARFCDRIhALKRGRVVASGTPSAILAPNTLQEIYGI 252
Cdd:TIGR03771 156 FIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDPAPWMTTFGV 211
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
32-242 |
7.52e-32 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 118.13 E-value: 7.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER------------VFaRSVAYLPQdv 99
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKelrelrrkkismVF-QSFALLPH-- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 ttgseMTVRELVGCGrypwhgaL---GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:cd03294 117 -----RTVLENVAFG-------LevqGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
28-252 |
1.21e-31 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 118.06 E-value: 1.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY----GNRDLRTygervfaRSVAYLPQ--DVTT 101
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIlgqpTRQALQK-------NLVAYVPQseEVDW 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEMTVRELVGCGRYPWHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK15056 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 182 ALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKrGRVVASG-TPSAILAPNTLQEIYGI 252
Cdd:PRK15056 172 GVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGpTETTFTAENLELAFSGV 241
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-232 |
1.30e-31 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 122.10 E-value: 1.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 8 QDPPRTAET-FVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrTYGER 86
Cdd:COG0488 306 PPPERLGKKvLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV--------KLGET 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 87 VfarSVAYLPQDVTT-GSEMTVRELVgcgrypWHGAlgrftkndEGKVEEALRAtYIEKF------ADRIVGTLSGGERQ 159
Cdd:COG0488 378 V---KIGYFDQHQEElDPDKTVLDEL------RDGA--------PGGTEQEVRG-YLGRFlfsgddAFKPVGVLSGGEKA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 160 RAWIAMLIAQDARCLLLDEPTAALDvahqIEVL-SLVRRLAHELGsSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:COG0488 440 RLALAKLLLSPPNVLLLDEPTNHLD----IETLeALEEALDDFPG-TVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
31-242 |
1.42e-31 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 116.72 E-value: 1.42e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrtygeRVFARSVAYLpqDVTTG--SEMTVR 108
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV------------EVNGRVSALL--ELGAGfhPELTGR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 E---LVGcgrypwhGALGrFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:COG1134 107 EniyLNG-------RLLG-LSRKEiDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1134 179 AAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
32-226 |
1.42e-31 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 122.01 E-value: 1.42e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQdVTTGSEMTVRELV 111
Cdd:TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ-HPFLFAGTIAENI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRypwHGAlgrftknDEGKVEEALRATYIEKFA-------DRIVGT----LSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:TIGR02857 417 RLAR---PDA-------SDAEIREALERAGLDEFVaalpqglDTPIGEggagLSGGQAQRLALARAFLRDAPLLLLDEPT 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648497063 181 AALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHAL 226
Cdd:TIGR02857 487 AHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
27-244 |
1.61e-31 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 116.56 E-value: 1.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmT 106
Cdd:cd03251 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGCGRypwHGAlgrftknDEGKVEEALRATYIEKFADR-------IVG----TLSGGERQRAWIAMLIAQDARCLL 175
Cdd:cd03251 92 VAENIAYGR---PGA-------TREEVEEAARAANAHEFIMElpegydtVIGergvKLSGGQRQRIAIARALLKDPPILI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:cd03251 162 LDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLS-TIENADRIVVLEDGKIVERGTHEELLAQG 227
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
28-242 |
3.21e-31 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 115.86 E-value: 3.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARSVAYLPQDVTTG----- 102
Cdd:COG1126 13 DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVD-------GEDLTDSKKDINKLRRKVGmvfqq 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 ----SEMTVRELVGCGryPWHgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG1126 86 fnlfPHLTVLENVTLA--PIK-VKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 179 PTAALD---VAhqiEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1126 163 PTSALDpelVG---EVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFE 225
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
27-242 |
4.75e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 116.49 E-value: 4.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRdlrtygervfarsvaylPQDVTTGSEMT 106
Cdd:PRK13636 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK-----------------PIDYSRKGLMK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVG-CGRYPWH-------------GALGRFTKNDE--GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQD 170
Cdd:PRK13636 80 LRESVGmVFQDPDNqlfsasvyqdvsfGAVNLKLPEDEvrKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 171 ARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
28-250 |
6.35e-31 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 117.48 E-value: 6.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrTyGERVFARSVAYLPQdvttgS---- 103
Cdd:COG3839 15 GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV-T-DLPPKDRNIAMVFQ-----Syaly 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 -EMTVRELVGCG-RypwhgaLGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:COG3839 88 pHMTVYENIAFPlK------LRKVPKAEiDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPsailapntlQEIY 250
Cdd:COG3839 162 SNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTP---------EELY 222
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
31-235 |
6.41e-31 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 114.55 E-value: 6.41e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRdlrtygervfarsVAYLPqDVTTG--SEMTVR 108
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-------------VSSLL-GLGGGfnPELTGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 E---LVGcgrypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:cd03220 103 EniyLNG-------RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 186 AHQIEVLslvRRLAHEL--GSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03220 176 AFQEKCQ---RRLRELLkqGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
27-244 |
1.14e-30 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 114.24 E-value: 1.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmT 106
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADR-------IVG----TLSGGERQRAWIAMLIAQDARCLL 175
Cdd:cd03254 93 IMENI---------RLGRPNATDE-EVIEAAKEAGAHDFIMKlpngydtVLGenggNLSQGERQLLAIARAMLRDPKILI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:cd03254 163 LDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
27-216 |
6.78e-30 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 110.98 E-value: 6.78e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSI-------SYGNRDLRTYGERVFarSVAYLPQDV 99
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVlidgeplDYSRKGLLERRQRVG--LVFQDPDDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSemTVRELVGCGryPWHgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:TIGR01166 81 LFAA--DVDQDVAFG--PLN--LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 648497063 180 TAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMA 216
Cdd:TIGR01166 155 TAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVDLA 190
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
28-246 |
7.93e-30 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 117.51 E-value: 7.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTV 107
Cdd:TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgrypwhgALGRFTKNDEGKVEEALRATYIEKFADRI-------VGT----LSGGERQRAWIAMLIAQDARCLLL 176
Cdd:TIGR02203 423 ANNI---------AYGRTEQADRAEIERALAAAYAQDFVDKLplgldtpIGEngvlLSGGQRQRLAIARALLKDAPILIL 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHELgSSVVIV--LHDINMAarfcDRIHALKRGRVVASGTPSAILAPNTL 246
Cdd:TIGR02203 494 DEATSALDNESERLVQAALERLMQGR-TTLVIAhrLSTIEKA----DRIVVMDDGRIVERGTHNELLARNGL 560
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
31-235 |
9.17e-30 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 111.59 E-value: 9.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSAGSIS----YGNRDLRTYgerVFARSVAYLPQDVTTGSEMT 106
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAIS-GRVEGGGTTSgqilFNGQPRKPD---QFQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVgcgRYPWHGALGRFTKNDEGKVEEA---LRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:cd03234 98 VRETL---TYTAILRLPRKSSDAIRKKRVEdvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 184 D--VAHQIevLSLVRRLAHElGSSVVIVLH----DInmaARFCDRIHALKRGRVVASG 235
Cdd:cd03234 175 DsfTALNL--VSTLSQLARR-NRIVILTIHqprsDL---FRLFDRILLLSSGEIVYSG 226
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
36-231 |
1.54e-29 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 110.72 E-value: 1.54e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 36 SLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGErvFARSVAYLPQDVTTGSEMTVRELVGCGR 115
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP--YQRPVSMLFQENNLFAHLTVRQNIGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 116 YPwhgALgRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLV 195
Cdd:TIGR01277 96 HP---GL-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171
|
170 180 190
....*....|....*....|....*....|....*.
gi 648497063 196 RRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
31-240 |
1.78e-29 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 111.17 E-value: 1.78e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL-------RTYGErVFaRSVAYLPQdvttgs 103
Cdd:cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDItnlpphkRPVNT-VF-QNYALFPH------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 eMTVRELVGCGRypwhgALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:cd03300 87 -LTVFENIAFGL-----RLKKLPKAEiKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 183 LDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
16-250 |
2.55e-29 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 110.83 E-value: 2.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 16 TFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARS-VAY 94
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLgIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 95 LPQDVTTGSEMTVRELVGCgrypwhgALGRFTKNDEGKVEEALRAtYIEKF-----ADRIVGTLSGGERQRAWIAMLIAQ 169
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMA-------VLEIRKDLDRAEREERLEA-LLEEFqishlRDNKAMSLSGGERRRVEIARALAT 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 170 DARCLLLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEI 249
Cdd:TIGR04406 153 NPKFILLDEPFAGVDPIAVGDIKKIIKHLK-ERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRV 231
|
.
gi 648497063 250 Y 250
Cdd:TIGR04406 232 Y 232
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
42-237 |
5.24e-29 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 115.27 E-value: 5.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygNRDLRtygervfarsVAYLPQDVTTGSEMTVRELvgcgrypwhga 121
Cdd:COG1245 366 GEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV---DEDLK----------ISYKPQYISPDYDGTVEEF----------- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 122 LGRFTKNDEGKV---EEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRL 198
Cdd:COG1245 422 LRSANTDDFGSSyykTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRF 501
|
170 180 190
....*....|....*....|....*....|....*....
gi 648497063 199 AHELGSSVVIVLHDINMAARFCDRIhalkrgrVVASGTP 237
Cdd:COG1245 502 AENRGKTAMVVDHDIYLIDYISDRL-------MVFEGEP 533
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
17-231 |
5.38e-29 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 108.07 E-value: 5.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 17 FVAENIGLLIEGNE--ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAY 94
Cdd:cd03246 1 LEVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 95 LPQDVT--TGSemtvrelvgcgrypwhgalgrftkndegkveealratyiekFADRIvgtLSGGERQRAWIAMLIAQDAR 172
Cdd:cd03246 81 LPQDDElfSGS-----------------------------------------IAENI---LSGGQRQRLGLARALYGNPR 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARfCDRIHALKRGRV 231
Cdd:cd03246 117 ILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
28-240 |
6.35e-29 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 114.35 E-value: 6.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARS--------VAYLPQDV 99
Cdd:COG1129 16 GVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLD-------GEPVRFRSprdaqaagIAIIHQEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGRYPWHGalGRFtknDEGKVEEALRAtYIEKF-----ADRIVGTLSGGERQRAWIAMLIAQDARCL 174
Cdd:COG1129 89 NLVPNLSVAENIFLGREPRRG--GLI---DWRAMRRRARE-LLARLgldidPDTPVGDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 175 LLDEPTAALDvAHQIEVL-SLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:COG1129 163 ILDEPTASLT-EREVERLfRIIRRLK-AQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
31-235 |
1.24e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 108.14 E-value: 1.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFarsvAYLPQDVTTGSEMTVRE- 109
Cdd:cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI----GYLPEERGLYPKMKVIDq 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGR---YPWHGALGRftkndegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:cd03269 91 LVYLAQlkgLKKEEARRR--------IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03269 163 NVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-238 |
1.28e-28 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 114.14 E-value: 1.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 24 LLIEGNEILRdvslkfpaGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISygnRDLRtygervfarsVAYLPQDVTTGS 103
Cdd:PRK13409 355 LEVEGGEIYE--------GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PELK----------ISYKPQYIKPDY 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVgcgrypwhgalgrftkndeGKVEEALRATY----------IEKFADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK13409 414 DGTVEDLL-------------------RSITDDLGSSYykseiikplqLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIhalkrgrVVASGTPS 238
Cdd:PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL-------MVFEGEPG 532
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
31-232 |
1.89e-28 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 109.39 E-value: 1.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRD---LRTYGERVFARSVAYLPQDVTTG--SEM 105
Cdd:PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPlakLNRAQRKAFRRDIQMVFQDSISAvnPRK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVgcgRYPWHGALGRFTKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:PRK10419 107 TVREII---REPLRHLLSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
34-235 |
2.17e-28 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 107.77 E-value: 2.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPaGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVF----ARSVAYLPQDVTTGSEMTVRE 109
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINlppqQRKIGLVFQQYALFPHLNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRypwhgalgRFTKNDEGK--VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:cd03297 95 NLAFGL--------KRKRNREDRisVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03297 167 RLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
32-235 |
2.28e-28 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 107.84 E-value: 2.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARsVAYLPQDVTTGSEMTVRELV 111
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR-LGFVSDSTGLYDRLTARENL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 G-CGRYpwHGALGRftkNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:cd03266 100 EyFAGL--YGLKGD---ELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 191 VLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03266 175 LREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
29-236 |
3.63e-28 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 108.56 E-value: 3.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY----GN---RDLRTYGERVFARS-VAYLPQDVT 100
Cdd:PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHiellGRtvqREGRLARDIRKSRAnTGYIFQQFN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 TGSEMTVRE--LVGC-GRYP-WHGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK09984 97 LVNRLSVLEnvLIGAlGSTPfWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGT 236
Cdd:PRK09984 177 DEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
30-239 |
4.31e-28 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 107.52 E-value: 4.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE----RVFARSVAYLPQDVTTGSEM 105
Cdd:COG4181 26 TILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEdaraRLRARHVGFVFQSFQLLPTL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVgcgrypwhgAL-----GRftKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:COG4181 106 TALENV---------MLplelaGR--RDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPT 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSA 239
Cdd:COG4181 175 GNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTAATA 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
20-235 |
4.86e-28 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 106.96 E-value: 4.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERvfARSVAYLPQDV 99
Cdd:cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGcgrypwHGALGRFTKNDE--GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:cd03301 82 ALYPHMTVYDNIA------FGLKLRKVPKDEidERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
27-265 |
6.06e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 108.24 E-value: 6.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGS-------ISYGNRDL----RTYG-------ERVF 88
Cdd:PRK13639 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEvlikgepIKYDKKSLlevrKTVGivfqnpdDQLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 89 ARSVAylpQDVTTGsemtvrelvgcgryPWHgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIA 168
Cdd:PRK13639 93 APTVE---EDVAFG--------------PLN--LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 169 QDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILApntlqe 248
Cdd:PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS------ 226
|
250
....*....|....*..
gi 648497063 249 iygiDMDVISAPNLPYP 265
Cdd:PRK13639 227 ----DIETIRKANLRLP 239
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
16-235 |
1.09e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 105.33 E-value: 1.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 16 TFVAENIGLLIEGN------EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA--GSISYGNRDLRtygERV 87
Cdd:cd03213 3 TLSFRNLTVTVKSSpsksgkQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPLD---KRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 88 FARSVAYLPQDVTTGSEMTVRElvgcgrypwhgalgrftkndegkveeALRatyiekFADRIVGtLSGGERQRAWIAMLI 167
Cdd:cd03213 80 FRKIIGYVPQDDILHPTLTVRE--------------------------TLM------FAAKLRG-LSGGERKRVSIALEL 126
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648497063 168 AQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLH-----DINMaarfCDRIHALKRGRVVASG 235
Cdd:cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHqpsseIFEL----FDKLLLLSQGRVIYFG 194
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
16-232 |
1.40e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 106.71 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 16 TFvaeNIGLLIEgNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYL 95
Cdd:COG1101 10 TF---NPGTVNE-KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKYIGRV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 96 PQD--VTTGSEMTVRE---LvgcgrypwhgALGRftkndeGK-------VEEALRATYIEKFA-------DRI---VGTL 153
Cdd:COG1101 86 FQDpmMGTAPSMTIEEnlaL----------AYRR------GKrrglrrgLTKKRRELFRELLAtlglgleNRLdtkVGLL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 154 SGGERQrAwIAMLIA--QDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:COG1101 150 SGGQRQ-A-LSLLMAtlTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRI 227
|
.
gi 648497063 232 V 232
Cdd:COG1101 228 I 228
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
27-242 |
1.47e-27 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 107.87 E-value: 1.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMT 106
Cdd:COG1125 13 DGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVELRRRIGYVIQQIGLFPHMT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRE---LVgcgryPwhgalgRFTKNDEGKVEEalRATYI--------EKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:COG1125 93 VAEniaTV-----P------RLLGWDKERIRA--RVDELlelvgldpEEYRDRYPHELSGGQQQRVGVARALAADPPILL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 176 LDEPTAALD----VAHQIEVLslvrRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1125 160 MDEPFGALDpitrEQLQDELL----RLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILA 226
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
27-266 |
1.53e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 107.10 E-value: 1.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEI--LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYL----P--QD 98
Cdd:PRK13633 19 ESTEKlaLDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMvfqnPdnQI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTgsemTVRELVGCGryPWHgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:PRK13633 99 VAT----IVEEDVAFG--PEN--LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILApnTLQEIYGIDMDVIS 258
Cdd:PRK13633 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK--EVEMMKKIGLDVPQ 247
|
....*...
gi 648497063 259 APNLPYPL 266
Cdd:PRK13633 248 VTELAYEL 255
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-266 |
1.99e-27 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 108.77 E-value: 1.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 1 MAMLPPTQDPPRTAETFVAE--NIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR 78
Cdd:PRK11607 2 NDAIPRPQAKTRKALTPLLEirNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 79 DLRTYGErvFARSVAYLPQDVTTGSEMTVRELVGCGRypwhgALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGE 157
Cdd:PRK11607 82 DLSHVPP--YQRPINMMFQSYALFPHMTVEQNIAFGL-----KQDKLPKAEiASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 158 RQRAWIAMLIAQDARCLLLDEPTAALDVA----HQIEVLSLVRRlaheLGSSVVIVLHDINMAARFCDRIHALKRGRVVA 233
Cdd:PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKlrdrMQLEVVDILER----VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 648497063 234 SGTPSAILA-PNT----------------LQEiYGIDMDVISAPNLPYPL 266
Cdd:PRK11607 231 IGEPEEIYEhPTTrysaefigsvnvfegvLKE-RQEDGLVIDSPGLVHPL 279
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
16-250 |
2.84e-27 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 105.75 E-value: 2.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 16 TFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRD--LRTYGERVfARSVA 93
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDisLLPLHARA-RRGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 94 YLPQDVTTGSEMTVRELVgCGRYPWHGALGRFTKNDegKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNL-MAVLQIRDDLSAEQRED--RANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
31-242 |
4.00e-27 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 109.91 E-value: 4.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRE- 109
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDn 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LvgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADRIVG----------TLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:PRK11160 434 L----------LLAAPNASDE-ALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEP 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648497063 180 TAALDVAHQIEVLSLVRrlAHELGSSVVIVLHDINMAARFcDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK11160 503 TEGLDAETERQILELLA--EHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQELLA 562
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
32-242 |
4.19e-27 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 109.39 E-value: 4.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVPSAGSISYGNRDLRTYGER-----------VFarsvaylpQDvT 100
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLR-LIPSEGEIRFDGQDLDGLSRRalrplrrrmqvVF--------QD-P 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 TGS---EMTVRELVGCGRYPWHGALGRftKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:COG4172 372 FGSlspRMTVGQIIAEGLRVHGPGLSA--AERRARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVL 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG4172 450 DEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFD 515
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
28-231 |
4.46e-27 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 104.15 E-value: 4.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA--RSVAYLPQDVTTGSEM 105
Cdd:cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINElrQKVGMVFQQFNLFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCGryP-WhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:cd03262 92 TVLENITLA--PiK--VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 185 VAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:cd03262 168 PELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
31-232 |
4.73e-27 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 105.66 E-value: 4.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTY---GERVFARSVAYLPQDV--TTGSEM 105
Cdd:TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLdrkQRRAFRRDVQLVFQDSpsAVNPRM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGcgrYPWHGALGRFTKNDEGKVEEALRATYIE-KFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:TIGR02769 106 TVRQIIG---EPLRHLTSLDESEQKARIAELLDMVGLRsEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
28-245 |
1.40e-26 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 103.55 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGN------RDLRTYGERVFARSVAYLPQDVTT 101
Cdd:COG4161 14 SHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLLRQKVGMVFQQYNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEMTVRE-LVgcgRYPWHgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:COG4161 94 WPHLTVMEnLI---EAPCK-VLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 181 AALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNT 245
Cdd:COG4161 170 AALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASHFTQPQT 233
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
32-238 |
3.10e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 106.65 E-value: 3.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARSvaylPQD------------- 98
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILID-------GKPVRIRS----PRDaialgigmvhqhf 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 --VTTgseMTVRELVGCGRYPWHGALGrftknDEGKVEEALRAtYIEKF-----ADRIVGTLSGGERQRAWIAMLIAQDA 171
Cdd:COG3845 90 mlVPN---LTVAENIVLGLEPTKGGRL-----DRKAARARIRE-LSERYgldvdPDAKVEDLSVGEQQRVEILKALYRGA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 172 RCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPS 238
Cdd:COG3845 161 RILILDEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTA 226
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
32-230 |
3.94e-26 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 102.13 E-value: 3.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY----GNRDLRTYGER----VFARSVAYLPQDVTTGS 103
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLAQASPReilaLRRRTIGYVSQFLRVIP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGcgrypwHGALGRFTKNDE--GKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:COG4778 107 RVSALDVVA------EPLLERGVDREEarARARELLARLNLpERLWDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPT 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGR 230
Cdd:COG4778 181 ASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
21-252 |
4.21e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 103.16 E-value: 4.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 21 NIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrTYGER---VFARSVAYLPQ 97
Cdd:PRK13638 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKRgllALRQQVATVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 D---------VTTGSEMTVRELvgcgrypwhgalGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIA 168
Cdd:PRK13638 85 DpeqqifytdIDSDIAFSLRNL------------GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 169 QDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQE 248
Cdd:PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAME 231
|
....
gi 648497063 249 IYGI 252
Cdd:PRK13638 232 QAGL 235
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
30-233 |
4.59e-26 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 101.66 E-value: 4.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA----RSVAYLPQDVTTGSEM 105
Cdd:TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAklrnKKLGFIYQFHHLLPDF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGcgrYPWhgALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:TIGR02211 99 TALENVA---MPL--LIGKKSVKEaKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFcDRIHALKRGRVVA 233
Cdd:TIGR02211 174 NNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
30-240 |
5.08e-26 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 104.40 E-value: 5.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrtygERVFA--RSVAYLPQDVTTGSEMTV 107
Cdd:PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV----SRLHArdRKVGFVFQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCG-------RYPWHGALGRftkndegKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PRK10851 92 FDNIAFGltvlprrERPNAAAIKA-------KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK10851 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
32-254 |
6.95e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 102.79 E-value: 6.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYG---------NRDLRTYGERV-----FARSVAYlpq 97
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGervitagkkNKKLKPLRKKVgivfqFPEHQLF--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 dvttgsEMTVRELVGCGryPwhgalgrftKNDEGKVEEAL-RATYI-------EKFADRIVGTLSGGERQRAWIAMLIAQ 169
Cdd:PRK13634 100 ------EETVEKDICFG--P---------MNFGVSEEDAKqKAREMielvglpEELLARSPFELSGGQMRRVAIAGVLAM 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 170 DARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA-PNTLQE 248
Cdd:PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAdPDELEA 242
|
....*.
gi 648497063 249 IyGIDM 254
Cdd:PRK13634 243 I-GLDL 247
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
32-241 |
8.03e-26 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 104.16 E-value: 8.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE----RVFARSVAYLPQDVTTGSEMTV 107
Cdd:TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPvelrEVRRKKIGMVFQQFALFPHMTI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:TIGR01186 89 LQNTSLGP----ELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL 241
Cdd:TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
32-231 |
1.23e-25 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 100.56 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA---RSVAYLPQDVTTGSEMTVR 108
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGCgrypwhgAL---GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:cd03292 97 ENVAF-------ALevtGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648497063 186 AHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:cd03292 170 DTTWEIMNLLKKI-NKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
27-246 |
1.38e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 101.02 E-value: 1.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmT 106
Cdd:cd03252 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR-S 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVgcgrypwhgALGRfTKNDEGKVEEALRATYIEKFA-------DRIVG----TLSGGERQRAWIAMLIAQDARCLL 175
Cdd:cd03252 92 IRDNI---------ALAD-PGMSMERVIEAAKLAGAHDFIselpegyDTIVGeqgaGLSGGQRQRIAIARALIHNPRILI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILAPNTL 246
Cdd:cd03252 162 FDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
47-246 |
1.42e-25 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 102.96 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 47 LVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL------RTYGERVFaRSVAYLPQdvttgseMTVRELVGcgrypwHG 120
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVtnvpphLRHINMVF-QSYALFPH-------MTVEENVA------FG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 121 ALGRFTKNDE--GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRL 198
Cdd:TIGR01187 67 LKMRKVPRAEikPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 199 AHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA-PNTL 246
Cdd:TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEePANL 195
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
32-240 |
2.50e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 101.36 E-value: 2.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYG---------NRDLRTYGERV-----FARSVAYlpq 97
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDdtlitstskNKDIKQIRKKVglvfqFPESQLF--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 dvttgsEMTVRELVGCGryPWHgaLGRFTKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK13649 100 ------EETVLKDVAFG--PQN--FGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK13649 170 DEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
34-232 |
2.90e-25 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 102.12 E-value: 2.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDvTTGS---EMTV 107
Cdd:COG4608 36 GVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGrelRPLRRRMQMVFQD-PYASlnpRMTV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGcgrYPW--HGALGRftKNDEGKVEEALRATYIEK-FADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:COG4608 115 GDIIA---EPLriHGLASK--AERRERVAELLELVGLRPeHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:COG4608 190 VSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIV 237
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
29-247 |
3.92e-25 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 99.70 E-value: 3.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR--DLRTygeRVFARSVAYLPQDVttG---- 102
Cdd:PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSK---TPSDKAIRELRRNV--Gmvfq 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 -----SEMTVRE-LVgcgRYPWHgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK11124 90 qynlwPHLTVQQnLI---EAPCR-VLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQ 247
Cdd:PRK11124 166 DEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEA 235
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
16-242 |
5.28e-25 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 99.33 E-value: 5.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 16 TFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYgeRVFARS---V 92
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHL--PMHKRArlgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AYLPQDVTTGSEMTVR-------ELVGCGRypwhgalgrftKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAM 165
Cdd:COG1137 81 GYLPQEASIFRKLTVEdnilavlELRKLSK-----------KEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 166 LIAQDARCLLLDEPTAALD---VahqIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG1137 150 ALATNPKFILLDEPFAGVDpiaV---ADIQKIIRHLK-ERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILN 225
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
32-236 |
6.98e-25 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 101.31 E-value: 6.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDVTTGSEMTVR 108
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSErelRAARRKIGMIFQHFNLLSSRTVA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGcgrYPWHGAlgRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:COG1135 101 ENVA---LPLEIA--GVPKAEiRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPET 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGT 236
Cdd:COG1135 176 TRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGP 224
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
32-249 |
7.31e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.12 E-value: 7.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrtYGERVFARSVaylpqdvttgsemtvRELV 111
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI--TDKKVKLSDI---------------RKKV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 G-CGRYPWH---------------GALGRFTKNDEGKVEEALRATYI--EKFADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK13637 86 GlVFQYPEYqlfeetiekdiafgpINLGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAP-NTLQEI 249
Cdd:PRK13637 166 LILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEvETLESI 242
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
31-242 |
8.78e-25 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 102.81 E-value: 8.78e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVREl 110
Cdd:TIGR01842 333 TLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAE- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 vgcgrypwhgALGRFTKN-DEGKVEEALRAT----YIEKFA---DRIVG----TLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:TIGR01842 411 ----------NIARFGENaDPEKIIEAAKLAgvheLILRLPdgyDTVIGpggaTLSGGQRQRIALARALYGDPKLVVLDE 480
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAArFCDRIHALKRGRVVASGTPSAILA 242
Cdd:TIGR01842 481 PNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLA 542
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
30-262 |
9.08e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 99.88 E-value: 9.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGS-------ISYGN-RDLRTYGERVFARsvaylPQDVTT 101
Cdd:PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSvlirgepITKENiREVRKFVGLVFQN-----PDDQIF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSemTVRELVGCGryPWHgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK13652 93 SP--TVEQDIAFG--PIN--LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 182 ALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI-LAPNTLQEIYgidMDVISAP 260
Cdd:PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIfLQPDLLARVH---LDLPSLP 243
|
..
gi 648497063 261 NL 262
Cdd:PRK13652 244 KL 245
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
19-230 |
1.01e-24 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 95.98 E-value: 1.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRdlrtygervfaRSVAYLPQd 98
Cdd:cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgsemtvrelvgcgrypwhgalgrftkndegkveealratyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 179 PTAALDVAHqieVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGR 230
Cdd:cd03221 97 PTNHLDLES---IEALEEALK-EYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
29-253 |
1.13e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 99.29 E-value: 1.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS-YGN-------RDLRTYGERVFARsvaylPQDVT 100
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKiDGItiskenlKEIRKKIGIIFQN-----PDNQF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 TGSemTVRELVgcgrypwhgALG----RFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK13632 97 IGA--TVEDDI---------AFGlenkKVPPKKmKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPNTLQEIYGID 253
Cdd:PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNKEILEKAKID 242
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
32-240 |
1.38e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 99.41 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrTYGERvfaRSVAYLPqdvttgsE------- 104
Cdd:COG4152 17 VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL-DPEDR---RRIGYLP-------Eerglypk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVgcgRYpwhgaLGRFTKNDEGKVEEALRAtYIEKF-----ADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:COG4152 86 MKVGEQL---VY-----LARLKGLSKAEAKRRADE-WLERLglgdrANKKVEELSKGNQQKVQLIAALLHDPELLILDEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 180 TAALD-VAHQIeVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:COG4152 157 FSGLDpVNVEL-LKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
27-250 |
1.71e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 100.79 E-value: 1.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL-RTYGER-----VFaRSVAYLPQdvt 100
Cdd:PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDItHVPAENrhvntVF-QSYALFPH--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 tgseMTVRELVGCGRypwhgalgRFTK--NDEGK--VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK09452 101 ----MTVFENVAFGL--------RMQKtpAAEITprVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 177 DEPTAALD----VAHQIEvlslVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPsailapntlQEIY 250
Cdd:PRK09452 169 DESLSALDyklrKQMQNE----LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP---------REIY 233
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-233 |
2.13e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 101.63 E-value: 2.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 6 PTQDPPRTAETFVAENIGllieGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR--DLRTY 83
Cdd:COG1129 246 PKRAAAPGEVVLEVEGLS----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRIRSP 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 84 GERVfARSVAYLPQD-VTTG--SEMTVRE---LVGCGRYPWHGALGRftkndegKVEEALRATYIEKF------ADRIVG 151
Cdd:COG1129 322 RDAI-RAGIAYVPEDrKGEGlvLDLSIREnitLASLDRLSRGGLLDR-------RRERALAEEYIKRLriktpsPEQPVG 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 TLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:COG1129 394 NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRI 472
|
..
gi 648497063 232 VA 233
Cdd:COG1129 473 VG 474
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
36-242 |
2.47e-24 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 97.35 E-value: 2.47e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 36 SLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRD-LRTYGERvfaRSVAYLPQDVTTGSEMTVRELVGCG 114
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhTTTPPSR---RPVSMLFQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 RYPwhgALgRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSL 194
Cdd:PRK10771 96 LNP---GL-KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 195 VRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK10771 172 VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
31-235 |
3.50e-24 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 95.46 E-value: 3.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfARSVAYLPQDVTTGSEmTVREL 110
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL-SSLISVLNQRPYLFDT-TLRNN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGcgrypwhgalGRFtkndegkveealratyiekfadrivgtlSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:cd03247 95 LG----------RRF----------------------------SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 191 VLSLVrrLAHELGSSVVIVLHDINMAARFcDRIHALKRGRVVASG 235
Cdd:cd03247 137 LLSLI--FEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
30-235 |
4.04e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 97.02 E-value: 4.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVRE 109
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRYPWHGALGRFTKNDEgKVEEALRatyIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQI 189
Cdd:cd03267 115 SFYLLAAIYDLPPARFKKRLD-ELSELLD---LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 648497063 190 EVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
32-266 |
4.90e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 97.51 E-value: 4.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGN--------RDLRTYGERVFARsvaylPQDVTTGS 103
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNqaitddnfEKLRKHIGIVFQN-----PDNQFVGS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 emTVRELVGCGrypwhgaLGRF---TKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PRK13648 100 --IVKYDVAFG-------LENHavpYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAP-NTLQEIyGIDmdvisa 259
Cdd:PRK13648 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHaEELTRI-GLD------ 242
|
....*..
gi 648497063 260 pnLPYPL 266
Cdd:PRK13648 243 --LPFPI 247
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-240 |
4.91e-24 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 97.41 E-value: 4.91e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 1 MAMLPPTQDPprtaeTFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR--QLVPSA---GSISY 75
Cdd:COG1117 1 MTAPASTLEP-----KIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmnDLIPGArveGEILL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 76 GNRDLrtYGERV------------------FARS----VAYLPqdvttgsemtvrelvgcgRYpwHGALGRftKNDEGKV 133
Cdd:COG1117 76 DGEDI--YDPDVdvvelrrrvgmvfqkpnpFPKSiydnVAYGL------------------RL--HGIKSK--SELDEIV 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 134 EEALRATYI-EKFADRI---VGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD-VA-HQIEvlSLVRRLAHELgsSVV 207
Cdd:COG1117 132 EESLRKAALwDEVKDRLkksALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpIStAKIE--ELILELKKDY--TIV 207
|
250 260 270
....*....|....*....|....*....|....*
gi 648497063 208 IVLHdiNM--AARFCDRIHALKRGRVVASGTPSAI 240
Cdd:COG1117 208 IVTH--NMqqAARVSDYTAFFYLGELVEFGPTEQI 240
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
42-252 |
6.44e-24 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 100.63 E-value: 6.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS-----------YGNRDLRTYGERVFARS--VAYLPQ------DVTTG 102
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSGELKPNLGDYDeepswdevlkrFRGTELQDYFKKLANGEikVAHKPQyvdlipKVFKG 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 semTVRELVgcgrypwhgalgrfTKNDE-GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:COG1245 179 ---TVRELL--------------EKVDErGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSS 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 182 ALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHalkrgrvVASGTPSAilapntlqeiYGI 252
Cdd:COG1245 242 YLDIYQRLNVARLIRELA-EEGKYVLVVEHDLAILDYLADYVH-------ILYGEPGV----------YGV 294
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
28-264 |
7.34e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 98.36 E-value: 7.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISygnrdlrTYGERVFARS------VAYLPQDVTT 101
Cdd:PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT-------VLGVPVPARArlararIGVVPQFDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEMTVRE-LVGCGRYpwhgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PRK13536 126 DLEFTVREnLLVFGRY-----FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALD--VAHQI--EVLSLVRRlahelGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPN---TLQEIYGID 253
Cdd:PRK13536 201 TGLDphARHLIweRLRSLLAR-----GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHigcQVIEIYGGD 275
|
250
....*....|.
gi 648497063 254 MDVISAPNLPY 264
Cdd:PRK13536 276 PHELSSLVKPY 286
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
22-231 |
9.58e-24 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 96.67 E-value: 9.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 22 IGLLIEG-------NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE--RVFARSV 92
Cdd:PRK11247 11 TPLLLNAvskrygeRTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREdtRLMFQDA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AYLPQDvttgsemTVRELVGCG-RYPWHGAlgrftkndegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDA 171
Cdd:PRK11247 91 RLLPWK-------KVIDNVGLGlKGQWRDA-----------ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 172 RCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
32-267 |
1.03e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 97.11 E-value: 1.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGN---------RDLRTYGERVFArsVAYLPQdvTTG 102
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDivvsstskqKEIKPVRKKVGV--VFQFPE--SQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 SEMTVRELVGCGryPWHGALGRftKNDEGKVEEALRATYIEK-FADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK13643 98 FEETVLKDVAFG--PQNFGIPK--EKAEKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 182 ALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSailapNTLQEIygidmDVISAPN 261
Cdd:PRK13643 174 GLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS-----DVFQEV-----DFLKAHE 242
|
....*.
gi 648497063 262 LPYPLA 267
Cdd:PRK13643 243 LGVPKA 248
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
30-242 |
1.13e-23 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 99.89 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRE 109
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQDTVLFND-TIAY 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRypwHGAlgrftknDEGKVEEALRATYIEKFADR-------IVG----TLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:COG5265 451 NIAYGR---PDA-------SEEEVEAAARAAQIHDFIESlpdgydtRVGerglKLSGGEKQRVAIARTLLKNPPILIFDE 520
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILA 242
Cdd:COG5265 521 ATSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTIVD-ADEILVLEAGRIVERGTHAELLA 581
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
42-239 |
1.99e-23 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 95.51 E-value: 1.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS-----------YGNRDLRTYGERVFAR--SVAYLPQDV------TTG 102
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDdppdwdeildeFRGSELQNYFTKLLEGdvKVIVKPQYVdlipkaVKG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 semTVRELVgcgrypwhgalgrfTKNDE-GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:cd03236 106 ---KVGELL--------------KKKDErGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSS 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 182 ALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHalkrgrvVASGTPSA 239
Cdd:cd03236 169 YLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIH-------CLYGEPGA 218
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
27-237 |
2.61e-23 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 94.48 E-value: 2.61e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVT--TGse 104
Cdd:cd03244 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVlfSG-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRElvgcgrypwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTL-----------SGGERQRAWIAMLIAQDARC 173
Cdd:cd03244 93 -TIRS-----------NLDPFGEYSDEELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVR-RLAHelgSSVVIVLHDIN--MAarfCDRIHALKRGRVVASGTP 237
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIReAFKD---CTVLTIAHRLDtiID---SDRILVLDKGRVVEFDSP 221
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
21-234 |
2.64e-23 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 98.44 E-value: 2.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 21 NIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER-VFARSVAYLPQDV 99
Cdd:PRK11288 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTaALAAGVAIIYQEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGRYPwhgalGRFTKNDEGK-VEEALRatYIEKFADRI-----VGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK11288 89 HLVPEMTVAENLYLGQLP-----HKGGIVNRRLlNYEARE--QLEHLGVDIdpdtpLKYLSIGQRQMVEIAKALARNARV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 174 LLLDEPTAALDvAHQIEVL-SLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:PRK11288 162 IAFDEPTSSLS-AREIEQLfRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
28-244 |
3.34e-23 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 98.66 E-value: 3.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQD--VTTGSEM 105
Cdd:TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEpyIFSGSIL 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 tvRELVgcgrypwhgaLGRFTKNDEGKVEEALRATYIEK--------FADRIV---GTLSGGERQRAWIAMLIAQDARCL 174
Cdd:TIGR01193 566 --ENLL----------LGAKENVSQDEIWAACEIAEIKDdienmplgYQTELSeegSSISGGQKQRIALARALLTDSKVL 633
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 175 LLDEPTAALDVAHQIEVLSLVRRLAHElgsSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELLDRN 699
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
30-250 |
6.26e-23 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 93.79 E-value: 6.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTY-GERVFARSVAYLPQDVTTGSEMTVR 108
Cdd:PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWqTAKIMREAVAIVPEGRRVFSRMTVE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGCGrypwhgalGRFTknDEGKVEEALRATY------IEKFADRiVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:PRK11614 99 ENLAMG--------GFFA--ERDQFQERIKWVYelfprlHERRIQR-AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 183 LDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:PRK11614 168 LAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAY 234
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
29-248 |
6.41e-23 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 94.00 E-value: 6.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR-------QLVPSAGSISYGN---RDLRTYGERVFARsvAYL-PQ 97
Cdd:PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKleeitsgDLIVDGLKVNDPKvdeRLIRQEAGMVFQQ--FYLfPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 dvttgseMTVRELVGCGRYPWHGAlgrfTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK09493 92 -------LTALENVMFGPLRVRGA----SKEEaEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA--PNT-LQE 248
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKnpPSQrLQE 234
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
13-212 |
7.34e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 97.43 E-value: 7.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 13 TAETFVAENIGLLIEG--------NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG 84
Cdd:TIGR02868 324 AAGAVGLGKPTLELRDlsagypgaPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 85 ERVFARSVAYLPQDVTTGSEmTVRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADRIVG-----------TL 153
Cdd:TIGR02868 404 QDEVRRRVSVCAQDAHLFDT-TVRENL---------RLARPDATDE-ELWAALERVGLADWLRALPDgldtvlgeggaRL 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 154 SGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVrrLAHELGSSVVIVLHD 212
Cdd:TIGR02868 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
27-249 |
1.25e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 93.90 E-value: 1.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGsisygnrdlrtygeRVFARSVaylpqDVTTGSEMT 106
Cdd:PRK13644 13 DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG--------------KVLVSGI-----DTGDFSKLQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 -VRELVG-CGRYPWHGALGRFTKND---------------EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQ 169
Cdd:PRK13644 74 gIRKLVGiVFQNPETQFVGRTVEEDlafgpenlclppieiRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 170 DARCLLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILAPNTLQEI 249
Cdd:PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
20-235 |
1.32e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 96.39 E-value: 1.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFAR---SVAYlp 96
Cdd:PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQlgiGIIY-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 QDVTTGSEMTVRELVGCGRYPWHGALG------RFTKNdegKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQD 170
Cdd:PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGvniidwREMRV---RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 171 ARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
28-211 |
2.32e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 91.47 E-value: 2.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDlrtYGERVFARSVAYL-PQDVTTGsEMT 106
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVAEACHYLgHRNAMKP-ALT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRE-LVGcgrypWHGALGrftkNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 185
Cdd:PRK13539 90 VAEnLEF-----WAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
170 180
....*....|....*....|....*..
gi 648497063 186 AHQIEVLSLVRrlAH-ELGSSVVIVLH 211
Cdd:PRK13539 161 AAVALFAELIR--AHlAQGGIVIAATH 185
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
31-254 |
2.43e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 93.33 E-value: 2.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER-----------VFARsvaylPQDV 99
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKtvwdirekvgiVFQN-----PDNQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSemTVRELVGcgrypwHGALGRFTKNDEGK--VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PRK13640 97 FVGA--TVGDDVA------FGLENRAVPRPEMIkiVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILA-PNTLQEIyGIDM 254
Cdd:PRK13640 169 ESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSkVEMLKEI-GLDI 244
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
19-216 |
4.48e-22 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 92.07 E-value: 4.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ER-VFARSVAYLP 96
Cdd:PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGaERgVVFQNEGLLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 -QDVTTGSEMTVrELVGCGRypwhgalgrftKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK11248 84 wRNVQDNVAFGL-QLAGVEK-----------MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMA 216
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
29-242 |
4.54e-22 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 95.16 E-value: 4.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKS-SLLKMLarQLVPSAgSISYGNRDLRTYGervfarsvaylpQDVTTGSEMTV 107
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvTALSIL--RLLPSP-PVVYPSGDIRFHG------------ESLLHASEQTL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVG-----------CGRYPWHG---------ALGRFTKNDEGKVE--EALRATYIEKFADRIVG---TLSGGERQRAW 162
Cdd:PRK15134 87 RGVRGnkiamifqepmVSLNPLHTlekqlyevlSLHRGMRREAARGEilNCLDRVGIRQAAKRLTDyphQLSGGERQRVM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 163 IAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK15134 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
26-241 |
6.04e-22 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 91.28 E-value: 6.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 26 IEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLA--RQLVPSAGSISYGNRDLRTYG--ERvfAR----------- 90
Cdd:COG0396 10 VEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDILELSpdER--ARagiflafqypv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 91 -----SVAYLPQDVTT---GSEMTVRElvgcgrypwhgalgrFTKndegKVEEALRATYI-EKFADRIV-GTLSGGERQR 160
Cdd:COG0396 88 eipgvSVSNFLRTALNarrGEELSARE---------------FLK----LLKEKMKELGLdEDFLDRYVnEGFSGGEKKR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 161 AWIAMLIAQDARCLLLDEPTAALDV-AHQIeVLSLVRRLAHElGSSVVIVLH-----DINMAarfcDRIHALKRGRVVAS 234
Cdd:COG0396 149 NEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKLRSP-DRGILIITHyqrilDYIKP----DFVHVLVDGRIVKS 222
|
....*..
gi 648497063 235 GTPSAIL 241
Cdd:COG0396 223 GGKELAL 229
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
27-230 |
6.36e-22 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 90.22 E-value: 6.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNrdlrtygervfarSVAYLPQD--VTTGse 104
Cdd:cd03250 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEpwIQNG-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 mTVRE--LVGcgrYPWhgalgrftknDEGKVEEALRA----TYIEKFADR---IVG----TLSGGERQRAWIAMLIAQDA 171
Cdd:cd03250 81 -TIREniLFG---KPF----------DEERYEKVIKAcalePDLEILPDGdltEIGekgiNLSGGQKQRISLARAVYSDA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 172 RCLLLDEPTAALD--VAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHALKRGR 230
Cdd:cd03250 147 DIYLLDDPLSAVDahVGRHIFENCILGLLLN--NKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
30-237 |
7.23e-22 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 90.16 E-value: 7.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRE 109
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 lvgcgrypwhgALGRFTKNDEGKVEEALRatyIEKFADrivgTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQi 189
Cdd:cd03369 101 -----------NLDPFDEYSDEEIYGALR---VSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648497063 190 evlSLVRRLAHEL--GSSVVIVLHDINMAARfCDRIHALKRGRVVASGTP 237
Cdd:cd03369 162 ---ALIQKTIREEftNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
42-252 |
8.07e-22 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 94.49 E-value: 8.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS-----------YGNRDLRTYGERVFAR--SVAYLPQ------DVTTG 102
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEeepswdevlkrFRGTELQNYFKKLYNGeiKVVHKPQyvdlipKVFKG 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 semTVRELVgcgrypwhgalgrfTKNDE-GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK13409 179 ---KVRELL--------------KKVDErGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 182 ALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARFCDRIHalkrgrvVASGTPSAilapntlqeiYGI 252
Cdd:PRK13409 242 YLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVH-------IAYGEPGA----------YGV 293
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
28-211 |
1.34e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 89.34 E-value: 1.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTyGERVFARSVAYLPQDVTTGSEMTV 107
Cdd:TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAE-QRDEPHENILYLGHLPGLKPELSA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RElvgcgRYPWHGALGRFTKNDegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:TIGR01189 91 LE-----NLHFWAAIHGGAQRT---IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAG 162
|
170 180
....*....|....*....|....*
gi 648497063 188 QIEVLSLVRrlAH-ELGSSVVIVLH 211
Cdd:TIGR01189 163 VALLAGLLR--AHlARGGIVLLTTH 185
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
29-242 |
1.39e-21 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 90.80 E-value: 1.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLR----TYGE---------RVFARSVAYL 95
Cdd:PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdKDGQlkvadknqlRLLRTRLTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 96 PQDVTTGSEMTVRELVGcgRYPWHgALGRFTKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCL 174
Cdd:PRK10619 98 FQHFNLWSHMTVLENVM--EAPIQ-VLGLSKQEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 175 LLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
20-238 |
1.42e-21 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 89.12 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLarqlvpsAGSISYgnrdlrtygeRVFARSVAYLPQDV 99
Cdd:cd03217 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTI-------MGHPKY----------EVTEGEILFKGEDI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TtgsEMTVRELVGCG-----RYP--WHGAlgrftkndegKVEEALRatYI-EKFadrivgtlSGGERQRAWIAMLIAQDA 171
Cdd:cd03217 67 T---DLPPEERARLGiflafQYPpeIPGV----------KNADFLR--YVnEGF--------SGGEKKRNEILQLLLLEP 123
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 172 RCLLLDEPTAALDvahqIEVLSLVRRLAHEL---GSSVVIVLHDINMAARF-CDRIHALKRGRVVASGTPS 238
Cdd:cd03217 124 DLAILDEPDSGLD----IDALRLVAEVINKLreeGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKE 190
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
24-223 |
1.99e-21 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 93.08 E-value: 1.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 24 LLIEgneilrDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrTYGERVfarSVAYLPQ--DVTT 101
Cdd:TIGR03719 336 LLID------DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI--------EIGETV---KLAYVDQsrDALD 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEmTVRELVGCGrypwhgalgrftkNDE---GKVEEALRAtYIEKF----AD--RIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:TIGR03719 399 PNK-TVWEEISGG-------------LDIiklGKREIPSRA-YVGRFnfkgSDqqKKVGQLSGGERNRVHLAKTLKSGGN 463
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 173 CLLLDEPTAALDVahqiEVLSLVRRLAHELGSSVVIVLHDinmaaR-FCDRI 223
Cdd:TIGR03719 464 VLLLDEPTNDLDV----ETLRALEEALLNFAGCAVVISHD-----RwFLDRI 506
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-252 |
2.57e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 90.11 E-value: 2.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 15 ETFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQL------VPSAGSISYGNRDLRTYGERVF 88
Cdd:PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIeiydskIKVDGKVLYFGKDIFQIDAIKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 89 ARSVAYLPQDVTTGSEMTVRELVGcgrYPWHGALGRFTKNDEGKVEEALRATYIEK-FADRI---VGTLSGGERQRAWIA 164
Cdd:PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIA---YPLKSHGIKEKREIKKIVEECLRKVGLWKeVYDRLnspASQLSGGQQQRLTIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 165 MLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELgsSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAP- 243
Cdd:PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSp 243
|
250
....*....|
gi 648497063 244 -NTLQEIYGI 252
Cdd:PRK14246 244 kNELTEKYVI 253
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-235 |
2.70e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 89.97 E-value: 2.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 18 VAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR--QLVPSA---GSISYGNRDLRTYGERVFARSV 92
Cdd:PRK14247 5 EIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRliELYPEArvsGEVYLDGQDIFKMDVIELRRRV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AYLPQDVTTGSEMTVRELVGCGRypwhgALGRFTKND---EGKVEEAL-RATYIEKFADRI---VGTLSGGERQRAWIAM 165
Cdd:PRK14247 85 QMVFQIPNPIPNLSIFENVALGL-----KLNRLVKSKkelQERVRWALeKAQLWDEVKDRLdapAGKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 166 LIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELgsSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
31-255 |
3.58e-21 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 90.63 E-value: 3.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARsVAYLPQDVTTGSEMTVRE- 109
Cdd:PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR-VGVVPQFDNLDPDFTVREn 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRYpwhgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD--VAH 187
Cdd:PRK13537 101 LLVFGRY-----FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDpqARH 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648497063 188 QI--EVLSLVRRlahelGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNT---LQEIYGIDMD 255
Cdd:PRK13537 176 LMweRLRSLLAR-----GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIgcdVIEIYGPDPV 243
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
31-213 |
4.00e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 89.54 E-value: 4.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ER--VFARSvAYLPQdvttgseMTV 107
Cdd:COG4525 22 ALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGaDRgvVFQKD-ALLPW-------LNV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVgcgrypwhgALG-RFTKND----EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:COG4525 94 LDNV---------AFGlRLRGVPkaerRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGA 164
|
170 180 190
....*....|....*....|....*....|.
gi 648497063 183 LDVAHQIEVLSLVRRLAHELGSSVVIVLHDI 213
Cdd:COG4525 165 LDALTREQMQELLLDVWQRTGKGVFLITHSV 195
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
32-268 |
4.74e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 90.07 E-value: 4.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGN-------------RDLRTYGERVFARSVAYLPQD 98
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipanlkkikevKRLRKEIGLVFQFPEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgsemTVRELVGCGryPWHgaLGRFTKNDEGKVEEALRATYI-EKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PRK13645 107 -------TIEKDIAFG--PVN--LGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDmdvi 257
Cdd:PRK13645 176 EPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEID---- 251
|
250
....*....|.
gi 648497063 258 sAPNLpYPLAY 268
Cdd:PRK13645 252 -PPKL-YQLMY 260
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
30-235 |
4.86e-21 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 88.09 E-value: 4.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA---GSISYGNRDLRTYGERvFARSVAYLPQDVTTGSEMT 106
Cdd:cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPYKEFAEK-YPGEIIYVSEEDVHFPTLT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELvgcgrypwhgalgrftkndegkVEEALRATyiekfADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:cd03233 100 VRET----------------------LDFALRCK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648497063 187 HQIEVLSLVRRLAHELGSSVVIVLHDIN--MAARFcDRIHALKRGRVVASG 235
Cdd:cd03233 153 TALEILKCIRTMADVLKTTTFVSLYQASdeIYDLF-DKVLVLYEGRQIYYG 202
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
32-231 |
5.45e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 87.10 E-value: 5.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL--RTYGERVfARSVAYLPQD-VTTG--SEMT 106
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVtrRSPRDAI-RAGIAYVPEDrKREGlvLDLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRElvgcgrypwHGALGRFtkndegkveealratyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:cd03215 95 VAE---------NIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:cd03215 139 AKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
35-240 |
7.88e-21 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 88.51 E-value: 7.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTY-GERVFARSVAYLPQDVTTGSEMTVRE--LV 111
Cdd:PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLpGHQIARMGVVRTFQHVRLFREMTVIEnlLV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRYPWHGALG------RFTKNDEGKVEEAlrATYIEK-----FADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PRK11300 104 AQHQQLKTGLFSgllktpAFRRAESEALDRA--ATWLERvglleHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK11300 182 AGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
|
| chvA |
TIGR01192 |
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein ... |
32-236 |
1.42e-20 |
|
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 130260 [Multi-domain] Cd Length: 585 Bit Score: 90.72 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRELV 111
Cdd:TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENI 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 gcgrypwhgALGRFTKNDEGKVEEALRAT---YIEKFA---DRIVGT----LSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:TIGR01192 430 ---------RLGREGATDEEVYEAAKAAAahdFILKRSngyDTLVGErgnrLSGGERQRLAIARAILKNAPILVLDEATS 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 182 ALDVAHQIEVLSLVRRLAHElgSSVVIVLHDINmAARFCDRIHALKRGRVVASGT 236
Cdd:TIGR01192 501 ALDVETEARVKNAIDALRKN--RTTFIIAHRLS-TVRNADLVLFLDQGRLIEKGS 552
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
30-238 |
2.01e-20 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 90.49 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLvpSAGSISYGNRDLRtyGERVFARSV----AYLPQDVTTGSEM 105
Cdd:TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS--PKGVKGSGSVLLN--GMPIDAKEMraisAYVQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRE-LVgcgrYPWHGALGRFTKNDEGK--VEEALRATYIEKFADRIVGT------LSGGERQRAWIAMLIAQDARCLLL 176
Cdd:TIGR00955 115 TVREhLM----FQAHLRMPRRVTKKEKRerVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFC 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINmAARFC--DRIHALKRGRVVASGTPS 238
Cdd:TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPS-SELFElfDKIILMAEGRVAYLGSPD 252
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
32-236 |
2.98e-20 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 90.02 E-value: 2.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRELV 111
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNI 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 gcgrypwhgALGRFTKNDEGKVEEALRAT---YIEKFADR---IVG----TLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK13657 430 ---------RVGRPDATDEEMRAAAERAQahdFIERKPDGydtVVGergrQLSGGERQRLAIARALLKDPPILILDEATS 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 182 ALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGT 236
Cdd:PRK13657 501 ALDVETEAKVKAALDELMK--GRTTFIIAHRLS-TVRNADRILVFDNGRVVESGS 552
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
29-236 |
3.49e-20 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 89.78 E-value: 3.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVR 108
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGCGrypwhgalgrFTKNDEGKVEEALRA----TYIEKFA---DRIVGT----LSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:TIGR00958 573 ENIAYG----------LTDTPDEEIMAAAKAanahDFIMEFPngyDTEVGEkgsqLSGGQKQRIAIARALVRKPRVLILD 642
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 178 EPTAALDVahqiEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGT 236
Cdd:TIGR00958 643 EATSALDA----ECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGT 696
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
20-214 |
3.92e-20 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 85.92 E-value: 3.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDV 99
Cdd:PRK10247 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEmTVRE-LVgcgrYPWhgaLGRFTKNDEGKVEEAL-RATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PRK10247 91 TLFGD-TVYDnLI----FPW---QIRNQQPDPAIFLDDLeRFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
|
170 180 190
....*....|....*....|....*....|....*..
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDIN 214
Cdd:PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
29-253 |
5.19e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 86.71 E-value: 5.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR--------DLRTYGERVFARsvaylPQDVT 100
Cdd:PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDllteenvwDIRHKIGMVFQN-----PDNQF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 TGSemTVRELVGCGrypwhgaL---GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PRK13650 95 VGA--TVEDDVAFG-------LenkGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAArFCDRIHALKRGRVVASGTPSAILA-PNTLQEIyGID 253
Cdd:PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSrGNDLLQL-GLD 240
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
28-235 |
5.26e-20 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 85.35 E-value: 5.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY-GNRDLRTYGERvfaRSVAYLPQDVTTGSEMT 106
Cdd:cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFdGKSYQKNIEAL---RRIGALIEAPGFYPNLT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGcgrypwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:cd03268 89 ARENLR--------LLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:cd03268 161 GIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
32-229 |
5.75e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 85.60 E-value: 5.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ER-VFARSVAYLPQdvttgseMTVRE 109
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGpDRmVVFQNYSLLPW-------LTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRypwHGALGRFTKNDEGK-VEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQ 188
Cdd:TIGR01184 74 NIALAV---DRVLPDLSKSERRAiVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 648497063 189 IEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRG 229
Cdd:TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
32-242 |
6.00e-20 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 87.55 E-value: 6.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE---RVFARSVAYLPQDVTTGSEMTVR 108
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEkelRKARRQIGMIFQHFNLLSSRTVF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVgcgrypwhgAL-----GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:PRK11153 101 DNV---------ALplelaGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 184 DVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK11153 172 DPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
19-211 |
1.06e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 84.47 E-value: 1.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrTYGERVFARSVAYLPQD 98
Cdd:cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQRDSIARGLLYLGHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 VTTGSEMTVRELVgcgRYpWHgalgrfTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:cd03231 82 PGIKTTLSVLENL---RF-WH------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151
|
170 180 190
....*....|....*....|....*....|....
gi 648497063 179 PTAALDVAHQIEVLSLVRrlAH-ELGSSVVIVLH 211
Cdd:cd03231 152 PTTALDKAGVARFAEAMA--GHcARGGMVVLTTH 183
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
32-241 |
1.10e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 87.40 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE----RVFARSVAYLPQDVTTGSEMTV 107
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelrEVRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYpwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:PRK10070 124 LDNTAFGME----LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL 241
Cdd:PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
24-223 |
1.47e-19 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 87.87 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 24 LLIEgneilrDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrTYGERVfarSVAYLPQ--DVTT 101
Cdd:PRK11819 338 LLID------DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI--------KIGETV---KLAYVDQsrDALD 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEmTVRELVGCGrypwhgalgrftkNDE---GKVEEALRAtYIEKF----AD--RIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:PRK11819 401 PNK-TVWEEISGG-------------LDIikvGNREIPSRA-YVGRFnfkgGDqqKKVGVLSGGERNRLHLAKTLKQGGN 465
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648497063 173 CLLLDEPTAALDVahqiEVL-SLVRRLAHELGSSVVIVlHDinmaaR-FCDRI 223
Cdd:PRK11819 466 VLLLDEPTNDLDV----ETLrALEEALLEFPGCAVVIS-HD-----RwFLDRI 508
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
27-218 |
1.52e-19 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 84.87 E-value: 1.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGN---EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA----RSVAYLPQ-- 97
Cdd:PRK11629 17 EGSvqtDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAelrnQKLGFIYQfh 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 ----DVTTGSEMTVRELVGcgrypwhgalGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK11629 97 hllpDFTALENVAMPLLIG----------KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAAR 218
Cdd:PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
30-254 |
2.05e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 85.22 E-value: 2.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYG---------NRDLRTYGER---VFARSVAYLPQ 97
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDditithktkDKYIRPVRKRigmVFQFPESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 DvttgsemTV-RELVgcgrypwhgaLG--RFTKNDEGKVEEALRATYIEKFADRIVGT----LSGGERQRAWIAMLIAQD 170
Cdd:PRK13646 101 D-------TVeREII----------FGpkNFKMNLDEVKNYAHRLLMDLGFSRDVMSQspfqMSGGQMRKIAIVSILAMN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 171 ARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIY 250
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
....
gi 648497063 251 GIDM 254
Cdd:PRK13646 244 HIGL 247
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
32-244 |
2.41e-19 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 87.38 E-value: 2.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVRELV 111
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 gcgrypwHGALGRFTKNDegkVEEALRATY----IEKFA---DRIVG----TLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PRK11176 439 -------YARTEQYSREQ---IEEAARMAYamdfINKMDnglDTVIGengvLLSGGQRQRIAIARALLRDSPILILDEAT 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 181 AALDVAHQIEVLSLVRRLAHElGSSVVIV--LHDINMAarfcDRIHALKRGRVVASGTPSAILAPN 244
Cdd:PRK11176 509 SALDTESERAIQAALDELQKN-RTSLVIAhrLSTIEKA----DEILVVEDGEIVERGTHAELLAQN 569
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
28-242 |
4.51e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 83.65 E-value: 4.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL---RTYGE-----RVFARSVAYLPQDV 99
Cdd:PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdtaRSLSQqkgliRQLRQHVGFVFQNF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGRYPWHG-------ALGRftkndegkveEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:PRK11264 95 NLFPHRTVLENIIEGPVIVKGepkeeatARAR----------ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
10-236 |
9.59e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 85.28 E-value: 9.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 10 PPRTAETFVAENIGLL-IEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLvPSAGSISYGNRDLRTYGERVF 88
Cdd:PRK11174 343 ASNDPVTIEAEDLEILsPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 89 ARSVAYLPQDVTTgSEMTVRELVgcgrypwhgALGRFTKNDEgKVEEALRATYIEKFADRIV-----------GTLSGGE 157
Cdd:PRK11174 422 RKHLSWVGQNPQL-PHGTLRDNV---------LLGNPDASDE-QLQQALENAWVSEFLPLLPqgldtpigdqaAGLSVGQ 490
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 158 RQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHelGSSVVIVLHDINMAARfCDRIHALKRGRVVASGT 236
Cdd:PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGD 566
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
9-259 |
1.09e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 83.22 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 9 DPPRTAETFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR-----QLVPSAGSISYGNRDLRTY 83
Cdd:PRK14271 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRmndkvSGYRYSGDVLLGGRSIFNY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 84 GERV-FARSVAYL-------PQDVTTGSEMTVRELVGCGRYPWHG-ALGRFTkndegkvEEALRATYIEKFADRIVgTLS 154
Cdd:PRK14271 94 RDVLeFRRRVGMLfqrpnpfPMSIMDNVLAGVRAHKLVPRKEFRGvAQARLT-------EVGLWDAVKDRLSDSPF-RLS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 155 GGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELgsSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEE 243
|
250 260
....*....|....*....|....*....
gi 648497063 235 GTPSAILA----PNTLQEIYGIDMDVISA 259
Cdd:PRK14271 244 GPTEQLFSspkhAETARYVAGLSGDVKDA 272
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
32-236 |
1.45e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 83.60 E-value: 1.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlRTYGERVFARSVAYLPQ-------------D 98
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEV-------RVLGYVPFKRRKEFARRigvvfgqrsqlwwD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgseMTVRElvgcgRYPWHGAL-----GRFTKN-DEgkVEEALRatyIEKFADRIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:COG4586 111 ------LPAID-----SFRLLKAIyripdAEYKKRlDE--LVELLD---LGELLDTPVRQLSLGQRMRCELAAALLHRPK 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGT 236
Cdd:COG4586 175 ILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGS 238
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
32-244 |
1.72e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 83.21 E-value: 1.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTygERVFARSVAYLPQDVTTGSEM------ 105
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKN--KKKTKEKEKVLEKLVIQKTRFkkikki 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 -TVRELVGC----GRYPWH----------GALGRFTKNDEGKvEEAlrATYI------EKFADRIVGTLSGGERQRAWIA 164
Cdd:PRK13651 101 kEIRRRVGVvfqfAEYQLFeqtiekdiifGPVSMGVSKEEAK-KRA--AKYIelvgldESYLQRSPFELSGGQKRRVALA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 165 MLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:PRK13651 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDN 256
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
35-242 |
1.72e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.47 E-value: 1.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrtygervfarsvaylpqDVTTGSE---MTVRELV 111
Cdd:TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV------------------------NVRVGDEwvdMTKPGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGR--------------YPWHGALGRFTKN------DEGKVEEAL----RATYIEKFA----DRIVGTLSGGERQRAWI 163
Cdd:TIGR03269 359 GRGRakryigilhqeydlYPHRTVLDNLTEAiglelpDELARMKAVitlkMVGFDEEKAeeilDKYPDELSEGERHRVAL 438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 164 AMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
21-240 |
1.89e-18 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 84.52 E-value: 1.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 21 NIGLLIEGNEI--LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARS------- 91
Cdd:PRK10261 19 NIAFMQEQQKIaaVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSeqsaaqm 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 92 -------VAYLPQDVTTGSE--MTVRELVGcGRYPWHGALGRFTKNDEGK-VEEALRATYIEKFADRIVGTLSGGERQRA 161
Cdd:PRK10261 99 rhvrgadMAMIFQEPMTSLNpvFTVGEQIA-ESIRLHQGASREEAMVEAKrMLDQVRIPEAQTILSRYPHQLSGGMRQRV 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 162 WIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK10261 178 MIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
35-237 |
2.64e-18 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 84.68 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVfARSVAYLPQDVTTGSEMTVRELVgcg 114
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV-RQSLGMCPQHNILFHHLTVAEHI--- 1024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 ryPWHGAL-GRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLS 193
Cdd:TIGR01257 1025 --LFYAQLkGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 648497063 194 LVrrLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTP 237
Cdd:TIGR01257 1103 LL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
32-234 |
3.83e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 83.44 E-value: 3.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSA---GSISYGNRDLRTYGERVFARS-VAYLPQDVTTGSEMTV 107
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLS-GVYPHGtyeGEIIFEGEELQASNIRDTERAgIAIIHQELALVKELSV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYPWHGALGRFTKNDEgKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALdVAH 187
Cdd:PRK13549 100 LENIFLGNEITPGGIMDYDAMYL-RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TES 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 188 QIEVL-SLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:PRK13549 178 ETAVLlDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGT 224
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
23-235 |
4.06e-18 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 81.28 E-value: 4.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 23 GLLIEGNEIL-RDVSLKFPAGEVVALVGHNGSGKSslLKMLARQLVPSAGsisygnrdLRTYGERVFARSVAYLPQDVTT 101
Cdd:PRK10418 9 NIALQAAQPLvHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAG--------VRQTAGRVLLDGKPVAPCALRG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 GSEMTVRELVGCGRYPWHG----------ALGRFTknDEGKVEEALRATYIEKfADRIVGT----LSGGERQRAWIAMLI 167
Cdd:PRK10418 79 RKIATIMQNPRSAFNPLHTmhtharetclALGKPA--DDATLTAALEAVGLEN-AARVLKLypfeMSGGMLQRMMIALAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 168 AQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
20-238 |
4.75e-18 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 80.77 E-value: 4.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLA---RQLVpSAGSISYGNRD---LRTYgERvfARSVA 93
Cdd:TIGR01978 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAghpSYEV-TSGTILFKGQDlleLEPD-ER--ARAGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 94 YL----PQDVttgSEMTVRELV-----GCGRYPWHGALGRFTKNDE-GKVEEALRatYIEKFADRIVGT-LSGGERQRAW 162
Cdd:TIGR01978 80 FLafqyPEEI---PGVSNLEFLrsalnARRSARGEEPLDLLDFEKLlKEKLALLD--MDEEFLNRSVNEgFSGGEKKRNE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 163 IAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFC-DRIHALKRGRVVASGTPS 238
Cdd:TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSGDVE 230
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
32-242 |
5.34e-18 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 83.25 E-value: 5.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLA--RQLvpSAGSISYGNRDL--RTYGERVFARsVAYLPQdvttG----- 102
Cdd:NF033858 17 LDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAgaRKI--QQGRVEVLGGDMadARHRRAVCPR-IAYMPQ----Glgknl 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 -SEMTVRE-------LVGcgrypwHGALGRftkndEGKVEEALRATYIEKFADRIVGTLSGGERQR-----AwiamLIaQ 169
Cdd:NF033858 90 yPTLSVFEnldffgrLFG------QDAAER-----RRRIDELLRATGLAPFADRPAGKLSGGMKQKlglccA----LI-H 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 170 DARCLLLDEPTAALDvahqieVLS------LVRRL-AHELGSSVVIVLHDINMAARFcDRIHALKRGRVVASGTPSAILA 242
Cdd:NF033858 154 DPDLLILDEPTTGVD------PLSrrqfweLIDRIrAERPGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLA 226
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
27-242 |
5.40e-18 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 83.23 E-value: 5.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmT 106
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGCGRypwhgalgrftKNDEGKVEEALR----ATYIEKFADRI---VG----TLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK10790 431 FLANVTLGR-----------DISEEQVWQALEtvqlAELARSLPDGLytpLGeqgnNLSVGQKQLLALARVLVQTPQILI 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 176 LDEPTAALDVAHQIEV---LSLVRR------LAHELgSSVVIVlhdinmaarfcDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK10790 500 LDEATANIDSGTEQAIqqaLAAVREhttlvvIAHRL-STIVEA-----------DTILVLHRGQAVEQGTHQQLLA 563
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
19-211 |
5.49e-18 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 79.85 E-value: 5.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERvFARSVAYLpqd 98
Cdd:PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-YHQDLLYL--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttG------SEMTVRE-LVgcgrypWHGALGRFTknDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDA 171
Cdd:PRK13538 80 ---GhqpgikTELTALEnLR------FYQRLHGPG--DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648497063 172 RCLLLDEPTAALDVAhqiEVLSLVRRLAH--ELGSSVVIVLH 211
Cdd:PRK13538 149 PLWILDEPFTAIDKQ---GVARLEALLAQhaEQGGMVILTTH 187
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-235 |
5.93e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 82.23 E-value: 5.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVF----ARSVAYLPQDVTTGSEMTVRe 109
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIClppeKRRIGYVFQDARLFPHYKVR- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 lvGCGRYpwhgALGRFTKNDEGKVEEALRatyIEKFADRIVGTLSGGERQRAWI--AMLIAQDarCLLLDEPTAALDVAH 187
Cdd:PRK11144 95 --GNLRY----GMAKSMVAQFDKIVALLG---IEPLLDRYPGSLSGGEKQRVAIgrALLTAPE--LLLMDEPLASLDLPR 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK11144 164 KRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
34-236 |
6.68e-18 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 81.69 E-value: 6.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKS----SLLKMLARQLVPSaGSISYGNRDLRTYGE----RVFARSVAYLPQDVTT---- 101
Cdd:PRK09473 34 DLNFSLRAGETLGIVGESGSGKSqtafALMGLLAANGRIG-GSATFNGREILNLPEkelnKLRAEQISMIFQDPMTslnp 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 ----GSE-MTVRELvgcgrypwHGALGRFTKNDEG-------KVEEALR--ATYIEKFadrivgtlSGGERQRAWIAMLI 167
Cdd:PRK09473 113 ymrvGEQlMEVLML--------HKGMSKAEAFEESvrmldavKMPEARKrmKMYPHEF--------SGGMRQRVMIAMAL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 168 AQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGT 236
Cdd:PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
32-262 |
7.24e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 80.91 E-value: 7.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlRTYGERVFARSVAYLPQDVTTGSEMTVRELV 111
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-------KIDGELLTAENVWNLRRKIGMVFQNPDNQFV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRYP--WHGALGRFTKNDE--GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:PRK13642 96 GATVEDdvAFGMENQGIPREEmiKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILApnTLQEIYGIDMDVISAPNL 262
Cdd:PRK13642 176 RQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFA--TSEDMVEIGLDVPFSSNL 247
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
32-250 |
7.36e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 81.03 E-value: 7.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY---------GNRDLRTYGERV---FARSVAYLpqdv 99
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIagyhitpetGNKNLKKLRKKVslvFQFPEAQL---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 ttgSEMTVRELVGCGryPWHgalgrFTKNDEGKVEEAL----RATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK13641 99 ---FENTVLKDVEFG--PKN-----FGFSEDEAKEKALkwlkKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA-PNTLQEIY 250
Cdd:PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSdKEWLKKHY 243
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
20-240 |
1.07e-17 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 80.16 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlrtygERVFARSVAYLPQDV 99
Cdd:PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRIGYVPQKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVrelvgcgrypwhgALGRFTKNDEG----KVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK09544 77 YLDTTLPL-------------TVNRFLRLRPGtkkeDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRgRVVASGTPSAI 240
Cdd:PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
28-249 |
1.28e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 82.00 E-value: 1.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARS-VAYLPQD-VTTGS-- 103
Cdd:COG3845 270 GVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLgVAYIPEDrLGRGLvp 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGCGRYpWHGALGRFTKNDEGKVEEALRAtYIEKF------ADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:COG3845 350 DMSVAENLILGRY-RRPPFSRGGFLDRKAIRAFAEE-LIEEFdvrtpgPDTPARSLSGGNQQKVILARELSRDPKLLIAA 427
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 178 EPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIlapnTLQEI 249
Cdd:COG3845 428 QPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEA----TREEI 494
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
7-211 |
2.61e-17 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 78.46 E-value: 2.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 7 TQDPPRTAET-FVAENIGLLIEGNE--ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTY 83
Cdd:COG2401 18 SSVLDLSERVaIVLEAFGVELRVVEryVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 84 GERVFARSVaYLPQDVTTGsemtVRELVGCGrypwhgaLGrftkndegkveEAlrATYIEKFAdrivgTLSGGERQRAWI 163
Cdd:COG2401 98 REASLIDAI-GRKGDFKDA----VELLNAVG-------LS-----------DA--VLWLRRFK-----ELSTGQKFRFRL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 164 AMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLH 211
Cdd:COG2401 148 ALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-235 |
2.78e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 78.73 E-value: 2.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrDLRTYGERVFA---------R 90
Cdd:PRK14267 8 VNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG--EVRLFGRNIYSpdvdpievrR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 91 SVAYLPQDVTTGSEMTVRELVGCGrYPWHGALGRFTKNDEgKVEEALR-ATYIEKFADRI---VGTLSGGERQRAWIAML 166
Cdd:PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLVKSKKELDE-RVEWALKkAALWDEVKDRLndyPSNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 167 IAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELgsSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
18-194 |
3.37e-17 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 80.71 E-value: 3.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 18 VAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNrdlrtygervfARSVAYLPQ 97
Cdd:PRK15064 321 EVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 98 DVTT--GSEMTVRELVGCGRYPWH------GALGR--FTKNDEGKVeealratyiekfadriVGTLSGGERQRAWIAMLI 167
Cdd:PRK15064 390 DHAYdfENDLTLFDWMSQWRQEGDdeqavrGTLGRllFSQDDIKKS----------------VKVLSGGEKGRMLFGKLM 453
|
170 180
....*....|....*....|....*..
gi 648497063 168 AQDARCLLLDEPTAALDVaHQIEVLSL 194
Cdd:PRK15064 454 MQKPNVLVMDEPTNHMDM-ESIESLNM 479
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
31-231 |
4.74e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 77.90 E-value: 4.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVREL 110
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VgcgrypwhgALGRFTKNDEGKVEEALRA---TYIEKFADRIV-------GTLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:cd03248 108 I---------AYGLQSCSFECVKEAAQKAhahSFISELASGYDtevgekgSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648497063 181 AALDVAHQIEVLSLVRRlAHElGSSVVIVLHDINMAARfCDRIHALKRGRV 231
Cdd:cd03248 179 SALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
28-212 |
5.27e-17 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 80.36 E-value: 5.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArqlvpsagsisygNRDLRTYGERVFA--RSVAYLPQDVTTGSEM 105
Cdd:TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-------------GVDKDFNGEARPQpgIKVGYLPQEPQLDPTK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCGRYPWHGALGRF--------TKNDE--------GKVEEALRAT-------YIEKFA--------DRIVGTLS 154
Cdd:TIGR03719 84 TVRENVEEGVAEIKDALDRFneisakyaEPDADfdklaaeqAELQEIIDAAdawdldsQLEIAMdalrcppwDADVTKLS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 155 GGERQRAWIAMLIAQDARCLLLDEPTAALDVahqiEVLSLVRRLAHELGSSVVIVLHD 212
Cdd:TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDA----ESVAWLERHLQEYPGTVVAVTHD 217
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
17-212 |
6.02e-17 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 80.38 E-value: 6.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 17 FVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrTYGErvfarsVAYLP 96
Cdd:PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG-----TKLE------VAYFD 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 Q-----DvttgSEMTVRELVGCGrypwhgalgrftKND---EGKVEEALraTYIEKF------ADRIVGTLSGGERQRAW 162
Cdd:PRK11147 389 QhraelD----PEKTVMDNLAEG------------KQEvmvNGRPRHVL--GYLQDFlfhpkrAMTPVKALSGGERNRLL 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 648497063 163 IAMLIAQDARCLLLDEPTAALDvahqIEVLSLVRRLAHELGSSVVIVLHD 212
Cdd:PRK11147 451 LARLFLKPSNLLILDEPTNDLD----VETLELLEELLDSYQGTVLLVSHD 496
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
32-264 |
6.16e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 79.87 E-value: 6.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSA---GSISYGNRDLRTYGERVFARS-VAYLPQDVTTGSEMTV 107
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILS-GVYPHGtwdGEIYWSGSPLKASNIRDTERAgIVIIHQELTLVPELSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYPWHGalGRFTKNDEG--KVEEALRATYIEKFAD-RIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:TIGR02633 96 AENIFLGNEITLP--GGRMAYNAMylRAKNLLRELQLDADNVtRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 185 VAHQIEVLSLVRRL-AHelGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAPNTLQEIYGIDMDVISaPNLP 263
Cdd:TIGR02633 174 EKETEILLDIIRDLkAH--GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLY-PHEP 250
|
.
gi 648497063 264 Y 264
Cdd:TIGR02633 251 H 251
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
30-233 |
7.48e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 79.77 E-value: 7.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGsisygnrdlrTYgeRVFARSVAYLPQDVTTGSEmtvRE 109
Cdd:PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG----------TY--RVAGQDVATLDADALAQLR---RE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRYPWHgALGRFT--KNDE------GKVEEALRATYIE-----KFADRI---VGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK10535 87 HFGFIFQRYH-LLSHLTaaQNVEvpavyaGLERKQRLLRAQEllqrlGLEDRVeyqPSQLSGGQQQRVSIARALMNGGQV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARfCDRIHALKRGRVVA 233
Cdd:PRK10535 166 ILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVR 223
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
31-229 |
4.07e-16 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 77.84 E-value: 4.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLvpSAGSISYGNRdLRTYGER--VFARSVAYLPQDVTTGSEMTVR 108
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV--TTGVITGGDR-LVNGRPLdsSFQRSIGYVQQQDLHLPTSTVR 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGCG---RYPWHgaLGRFTKNDegKVEEALRATYIEKFADRIVGT----LSGGERQRAWIAM-LIAQDARCLLLDEPT 180
Cdd:TIGR00956 855 ESLRFSaylRQPKS--VSKSEKME--YVEEVIKLLEMESYADAVVGVpgegLNVEQRKRLTIGVeLVAKPKLLLFLDEPT 930
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648497063 181 AALDVAHQIEVLSLVRRLAHElGSSVVIVLH--DINMAARFcDRIHALKRG 229
Cdd:TIGR00956 931 SGLDSQTAWSICKLMRKLADH-GQAILCTIHqpSAILFEEF-DRLLLLQKG 979
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
29-246 |
4.25e-16 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 76.68 E-value: 4.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSI----------SYGNRDLRTygerVFaRSVAYLPQd 98
Cdd:PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIfidgedvthrSIQQRDICM----VF-QSYALFPH- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 vttgseMTVRELVGCGRypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:PRK11432 93 ------MSLGENVGYGL----KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI-LAPNTL 246
Cdd:PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyRQPASR 231
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
39-224 |
4.99e-16 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 73.76 E-value: 4.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 39 FPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYgnrDLRTygervfarsVAYLPQDVTtgsemtvrelvgcgrypw 118
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW---DGIT---------PVYKPQYID------------------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 119 hgalgrftkndegkveealratyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRL 198
Cdd:cd03222 72 ----------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
|
170 180
....*....|....*....|....*.
gi 648497063 199 AHELGSSVVIVLHDINMAARFCDRIH 224
Cdd:cd03222 118 SEEGKKTALVVEHDLAVLDYLSDRIH 143
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
28-232 |
5.45e-16 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 74.91 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER---VFARSVAYLPQDVTTGSE 104
Cdd:PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpFLRRQIGMIFQDHHLLMD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVGcgrYPWHGAlGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:PRK10908 94 RTVYDNVA---IPLIIA-GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 648497063 185 VAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVV 232
Cdd:PRK10908 170 DALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
12-221 |
5.86e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 75.59 E-value: 5.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 12 RTAETFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR--QLVPSA---GSISYGNRDLrtYGER 86
Cdd:PRK14243 6 GTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRlnDLIPGFrveGKVTFHGKNL--YAPD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 87 V------------------FARS----VAYLPQdvTTGSEMTVRELVgcgrypwHGALGRFTKNDEgkVEEALRATYIek 144
Cdd:PRK14243 84 VdpvevrrrigmvfqkpnpFPKSiydnIAYGAR--INGYKGDMDELV-------ERSLRQAALWDE--VKDKLKQSGL-- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 145 fadrivgTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDvahQIEVLSlVRRLAHELGS--SVVIVLHDINMAARFCD 221
Cdd:PRK14243 151 -------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD---PISTLR-IEELMHELKEqyTIIIVTHNMQQAARVSD 218
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
11-208 |
1.06e-15 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 76.38 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 11 PRTAETFVAENIGLLI-EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArQLVPSA-GSISygnrdlRTYGERV- 87
Cdd:COG4178 357 TSEDGALALEDLTLRTpDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIA-GLWPYGsGRIA------RPAGARVl 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 88 FARSVAYLPQDvttgsemTVRELVgCgrYPwHGAlgrfTKNDEGKVEEALRATYIEKFADRI------VGTLSGGERQRA 161
Cdd:COG4178 430 FLPQRPYLPLG-------TLREAL-L--YP-ATA----EAFSDAELREALEAVGLGHLAERLdeeadwDQVLSLGEQQRL 494
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 162 WIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRrlaHELGSSVVI 208
Cdd:COG4178 495 AFARLLLHKPDWLFLDEATSALDEENEAALYQLLR---EELPGTTVI 538
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
28-237 |
2.37e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 74.68 E-value: 2.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArqlvpSAGSISYGnrDLRTYGERV-----FARSVAYLPQDVTTG 102
Cdd:PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-----GLEDITSG--DLFIGEKRMndvppAERGVGMVFQSYALY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 SEMTVRELVGCGRypwhgALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK11000 88 PHLSVAENMSFGL-----KLAGAKKEEiNQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 182 ALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTP 237
Cdd:PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
28-240 |
2.48e-15 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 74.49 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTY--GER----VFARSVAYlPQdvtt 101
Cdd:PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELepADRdiamVFQNYALY-PH---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 102 gseMTVRELVGCG---RypwhgalgRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRawIAM--LIAQDARCLL 175
Cdd:PRK11650 91 ---MSVRENMAYGlkiR--------GMPKAEiEERVAEAARILELEPLLDRKPRELSGGQRQR--VAMgrAIVREPAVFL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 176 LDEPTAALD----VAHQIEVLSLVRRlaheLGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK11650 158 FDEPLSNLDaklrVQMRLEIQRLHRR----LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-235 |
2.67e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.09 E-value: 2.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 19 AENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARSVA----- 93
Cdd:PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG-------GNPCARLTPAkahql 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 94 --YL-PQDVTTGSEMTVRELVgCGRYPWHGAlgrftknDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQD 170
Cdd:PRK15439 87 giYLvPQEPLLFPNLSVKENI-LFGLPKRQA-------SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 171 ARCLLLDEPTAALDVAHQIEVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:PRK15439 159 SRILILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
35-240 |
5.34e-15 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 73.62 E-value: 5.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKS-SLLKMLARQLVP---SAGSISYGNRDLRTYGER----VFARSVAYLPQDVTTgsEMT 106
Cdd:PRK11022 26 ISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISEKerrnLVGAEVAMIFQDPMT--SLN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGcgrYPWHGALgrftKNDEGKVEEALRATYIEKFAdrIVG-------------TLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK11022 104 PCYTVG---FQIMEAI----KVHQGGNKKTRRQRAIDLLN--QVGipdpasrldvyphQLSGGMSQRVMIAMAIACRPKL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
31-252 |
5.48e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 72.88 E-value: 5.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDL------RTYGERvfaRSVAYLPQDVTTGSE 104
Cdd:PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsrsRLYTVR---KRMSMLFQSGALFTD 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRELVGcgrYPW--HGALGrftkndegkvEEALRATYIEKF--------ADRIVGTLSGGERQRAWIAMLIAQDARCL 174
Cdd:PRK11831 99 MNVFDNVA---YPLreHTQLP----------APLLHSTVMMKLeavglrgaAKLMPSELSGGMARRAALARAIALEPDLI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 175 LLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA---PNTLQEIYG 251
Cdd:PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAnpdPRVRQFLDG 245
|
.
gi 648497063 252 I 252
Cdd:PRK11831 246 I 246
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
34-240 |
5.68e-15 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 73.59 E-value: 5.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVP-SAGSISYGNRDLRTYGE---RVFARSVAYLPQD--VTTGSEMTV 107
Cdd:PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKaTDGEVAWLGKDLLGMKDdewRAVRSDIQMIFQDplASLNPRMTI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYPWHGALGRFTKNDEGKvEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 187
Cdd:PRK15079 118 GEIIAEPLRTYHPKLSRQEVKDRVK-AMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 648497063 188 QIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK15079 197 QAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
29-242 |
6.65e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 73.97 E-value: 6.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVPSAGSISYGNRDLRTYGERV---FARSVAYLPQDVTTG--S 103
Cdd:PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR-LINSQGEIWFDGQPLHNLNRRQllpVRHRIQVVFQDPNSSlnP 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGCG---RYPWHGALGRftkndEGKVEEALRATYIEKFA-DRIVGTLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:PRK15134 378 RLNVLQIIEEGlrvHQPTLSAAQR-----EQQVIAVMEEVGLDPETrHRYPAEFSGGQRQRIAIARALILKPSLIILDEP 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648497063 180 TAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK15134 453 TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
30-240 |
8.29e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.55 E-value: 8.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERV-FARSVAYLPQDvttgsemtvR 108
Cdd:PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrLARGLVYLPED---------R 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVG-----------CGRYpwHGALGRF--TKNDEGKVEEALRATYIeKF--ADRIVGTLSGGERQRAWIAMLIAQDARC 173
Cdd:PRK15439 348 QSSGlyldaplawnvCALT--HNRRGFWikPARENAVLERYRRALNI-KFnhAEQAARTLSGGNQQKVLIAKCLEASPQL 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK15439 425 LIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
24-259 |
9.00e-15 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 72.20 E-value: 9.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 24 LLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRdlrtygervfarsVAYLPQdVTTGS 103
Cdd:cd03291 45 LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQ-FSWIM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGCGrypwhgalgrfTKNDEGKVEEALRATYIE----KFADR---IVG----TLSGGERQRAWIAMLIAQDAR 172
Cdd:cd03291 111 PGTIKENIIFG-----------VSYDEYRYKSVVKACQLEeditKFPEKdntVLGeggiTLSGGQRARISLARAVYKDAD 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 173 CLLLDEPTAALDVAHQIEVL-SLVRRLaheLGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI--LAPNTLQEI 249
Cdd:cd03291 180 LYLLDSPFGYLDVFTEKEIFeSCVCKL---MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELqsLRPDFSSKL 256
|
250
....*....|.
gi 648497063 250 YGID-MDVISA 259
Cdd:cd03291 257 MGYDtFDQFSA 267
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
26-235 |
1.19e-14 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 73.66 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 26 IEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGsisygnrdlrtygeRVFA-RSVAYLPQDVTTgSE 104
Cdd:PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG--------------RVWAeRSIAYVPQQAWI-MN 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 105 MTVRelvgcgrypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVG-----------TLSGGERQRAWIAMLIAQDARC 173
Cdd:PTZ00243 735 ATVR-----------GNILFFDEEDAARLADAVRVSQLEADLAQLGGgleteigekgvNLSGGQKARVSLARAVYANRDV 803
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 174 LLLDEPTAALD--VAHQIEVLSLVRRLAhelGSSVVIVLHDINMAARfCDRIHALKRGRVVASG 235
Cdd:PTZ00243 804 YLLDDPLSALDahVGERVVEECFLGALA---GKTRVLATHQVHVVPR-ADYVVALGDGRVEFSG 863
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
32-242 |
1.57e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 72.30 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGervfARSVAYLPQDVttgsemtvrELV 111
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD----PEAQKLLRQKI---------QIV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRYpwhGALgrftkNDEGKV----EEAL-------RATYIEK-------------FADRIVGTLSGGERQRAWIA--- 164
Cdd:PRK11308 98 FQNPY---GSL-----NPRKKVgqilEEPLlintslsAAERREKalammakvglrpeHYDRYPHMFSGGQRQRIAIAral 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 165 MLiaqDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK11308 170 ML---DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
30-222 |
1.57e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 71.35 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLAR--QLVPS---AGSISYGNRDLrtYGER------------VFARSV 92
Cdd:PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRmnDLNPEvtiTGSIVYNGHNI--YSPRtdtvdlrkeigmVFQQPN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AYlpqdvttgsEMTVRELVGCG-RYPwhgalGRFTKN--DEGkVEEALRATYI-EKFADRI----VGtLSGGERQRAWIA 164
Cdd:PRK14239 97 PF---------PMSIYENVVYGlRLK-----GIKDKQvlDEA-VEKSLKGASIwDEVKDRLhdsaLG-LSGGQQQRVCIA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 165 MLIAQDARCLLLDEPTAALD--VAHQIEvlSLVRRLAHELgsSVVIVLHDINMAARFCDR 222
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDpiSAGKIE--ETLLGLKDDY--TMLLVTRSMQQASRISDR 216
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
31-231 |
1.92e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.58 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGE----RVFARSVAYLPQDVTTGSEMT 106
Cdd:PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEearaKLRAKHVGFVFQSFMLIPTLN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVgcgRYPwhgALGRFTKNDEGKVE--EALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:PRK10584 105 ALENV---ELP---ALLRGESSRQSRNGakALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 185 VAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARfCDRIHALKRGRV 231
Cdd:PRK10584 179 RQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
20-242 |
2.64e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 72.14 E-value: 2.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKML--ARQLVPSAGSISY---------------------- 75
Cdd:TIGR03269 4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIIYhvalcekcgyverpskvgepcp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 76 --GN-----------------RDLRTYGERVFARSVAYLPQDVTTGSEMTVRELVGcgrYPWHGALGRFTKNDEgKVEEA 136
Cdd:TIGR03269 84 vcGGtlepeevdfwnlsdklrRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIE-MVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 137 LRATYIEKfadrivgTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMA 216
Cdd:TIGR03269 160 HRITHIAR-------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
|
250 260
....*....|....*....|....*.
gi 648497063 217 ARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVA 258
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
30-212 |
4.08e-14 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 71.69 E-value: 4.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLArqlvpsagsisygNRDLRTYGERVFA--RSVAYLPQDVTTGSEMTV 107
Cdd:PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-------------GVDKEFEGEARPApgIKVGYLPQEPQLDPEKTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYPWHGALGRF-----------TKNDE-----GKVEEALRA-------TYIEKFAD--R------IVGTLSGG 156
Cdd:PRK11819 88 RENVEEGVAEVKAALDRFneiyaayaepdADFDAlaaeqGELQEIIDAadawdldSQLEIAMDalRcppwdaKVTKLSGG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 157 ERQRAWIAMLIAQDARCLLLDEPTAALDVahqiE-VLSLVRRLAHELGsSVVIVLHD 212
Cdd:PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDA----EsVAWLEQFLHDYPG-TVVAVTHD 219
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
34-242 |
6.43e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 71.31 E-value: 6.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIS-YGN----RDLRTygeRvfaRSVAYLPQDVTTGSEMTVR 108
Cdd:NF033858 284 HVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWlFGQpvdaGDIAT---R---RRVGYMSQAFSLYGELTVR 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ---ELvgcgrypwHGALGRFTKND-EGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:NF033858 358 qnlEL--------HARLFHLPAAEiAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 185 -VA------HQIEvlslvrrLAHELGSSVVIVLHDINMAARfCDRI---HAlkrGRVVASGTPSAILA 242
Cdd:NF033858 430 pVArdmfwrLLIE-------LSREDGVTIFISTHFMNEAER-CDRIslmHA---GRVLASDTPAALVA 486
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
30-229 |
7.36e-14 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 68.04 E-value: 7.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQlvPSAGSISyGNRDLRTY-GERVFARSVAYLPQDVTTGSEMTVR 108
Cdd:cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR--KTAGVIT-GEILINGRpLDKNFQRSTGYVEQQDVHSPNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ElvgcgrypwhgALgRFTKNdegkveeaLRAtyiekfadrivgtLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQ 188
Cdd:cd03232 98 E-----------AL-RFSAL--------LRG-------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 648497063 189 IEVLSLVRRLAHElGSSVVIVLH--DINMAARFcDRIHALKRG 229
Cdd:cd03232 145 YNIVRFLKKLADS-GQAILCTIHqpSASIFEKF-DRLLLLKRG 185
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
28-257 |
7.43e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.91 E-value: 7.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLR-TYGERVFARSVAYLPQDVTTGSEMT 106
Cdd:PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfKSSKEALENGISMVHQELNLVLQRS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELVGCGRYPWHGAlgrFTknDEGKVEEALRATYIEKFAD----RIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:PRK10982 90 VMDNMWLGRYPTKGM---FV--DQDKMYRDTKAIFDELDIDidprAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 183 L---DVAHqieVLSLVRRLaHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASgtpsailapntlQEIYGIDMDVI 257
Cdd:PRK10982 165 LtekEVNH---LFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT------------QPLAGLTMDKI 226
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
27-211 |
8.21e-14 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 67.56 E-value: 8.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 27 EGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVPSA-GSISygnrdlRTYGERVFarsvaYLPQD--VTTGs 103
Cdd:cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGsGRIG------MPEGEDLL-----FLPQRpyLPLG- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 emTVRELVgcgRYPWhgalgrftkndegkveealratyiekfaDRIvgtLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:cd03223 79 --TLREQL---IYPW----------------------------DDV---LSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122
|
170 180
....*....|....*....|....*...
gi 648497063 184 DVahqiEVLSLVRRLAHELGSSVVIVLH 211
Cdd:cd03223 123 DE----ESEDRLYQLLKELGITVISVGH 146
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
33-231 |
1.03e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.58 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 33 RDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdlRTYGERVFARS--------VAYLPQDV-TTG- 102
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI-------RLNGKDISPRSpldavkkgMAYITESRrDNGf 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 103 -SEMTVRELVGCGRY----PWHGALGRFTKNDEGKVEEALRATYIEKFA--DRIVGTLSGGERQRAWIAMLIAQDARCLL 175
Cdd:PRK09700 353 fPNFSIAQNMAISRSlkdgGYKGAMGLFHEVDEQRTAENQRELLALKCHsvNQNITELSGGNQQKVLISKWLCCCPEVII 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 176 LDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK09700 433 FDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-221 |
1.33e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 68.91 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQ-----LVPSAGSISYGNRDLrtYGERV----FAR 90
Cdd:PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFNQNI--YERRVnlnrLRR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 91 SVAYL-------PQDVTTGSEMTVReLVGcgrypWHGALgrftkNDEGKVEEALRATYI-EKFADRIVGT---LSGGERQ 159
Cdd:PRK14258 89 QVSMVhpkpnlfPMSVYDNVAYGVK-IVG-----WRPKL-----EIDDIVESALKDADLwDEIKHKIHKSaldLSGGQQQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 160 RAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVR--RLAHELgsSVVIVLHDINMAARFCD 221
Cdd:PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQslRLRSEL--TMVIVSHNLHQVSRLSD 219
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
35-241 |
1.89e-13 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 69.16 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPS----AGSISYGNRDL--RTYGER--VFARSVAYLPQDVTTG---S 103
Cdd:COG4170 26 VSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLlkLSPRERrkIIGREIAMIFQEPSSCldpS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELV------GCGRYPWHgalgRFTKndegkveealRATYIEKFADRiVGT-------------LSGGERQRAWIA 164
Cdd:COG4170 106 AKIGDQLIeaipswTFKGKWWQ----RFKW----------RKKRAIELLHR-VGIkdhkdimnsypheLTEGECQKVMIA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 165 MLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAIL 241
Cdd:COG4170 171 MAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQIL 247
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
28-192 |
4.21e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 69.17 E-value: 4.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRdlrtygervfarsVAYLPQdVTTGSEMTV 107
Cdd:TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-------------ISFSPQ-TSWIMPGTI 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGrypwhgalgrfTKNDEGKVEEALRATYIE----KFA--DRIV-----GTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:TIGR01271 504 KDNIIFG-----------LSYDEYRYTSVIKACQLEediaLFPekDKTVlgeggITLSGGQRARISLARAVYKDADLYLL 572
|
170
....*....|....*.
gi 648497063 177 DEPTAALDVAHQIEVL 192
Cdd:TIGR01271 573 DSPFTHLDVVTEKEIF 588
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
32-233 |
4.81e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 68.49 E-value: 4.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARS-VAYLPQDVTTGSEMTVREL 110
Cdd:PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAgIGIIHQELNLIPQLTIAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPwhgaLGRFTKNDEGKV-EEA---LRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:PRK10762 100 IFLGREF----VNRFGRIDWKKMyAEAdklLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVA 233
Cdd:PRK10762 176 ETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
35-269 |
5.03e-13 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 67.91 E-value: 5.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLA----RQLVPSAGSISYGNRDLRTYGER----VFARSVAYL---PQDVTTGS 103
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICgvtkDNWRVTADRMRFDDIDLLRLSPRerrkLVGHNVSMIfqePQSCLDPS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRELVGC-------GRYpWHgalgRFTKNDEGKVEeALRATYIEKFADrIVGT----LSGGERQRAWIAMLIAQDAR 172
Cdd:PRK15093 106 ERVGRQLMQNipgwtykGRW-WQ----RFGWRKRRAIE-LLHRVGIKDHKD-AMRSfpyeLTEGECQKVMIAIALANQPR 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSailapntlqeiygi 252
Cdd:PRK15093 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSK-------------- 244
|
250
....*....|....*..
gi 648497063 253 dmDVISAPNLPYPLAYV 269
Cdd:PRK15093 245 --ELVTTPHHPYTQALI 259
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
26-211 |
6.84e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 68.37 E-value: 6.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 26 IEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPS--AGSISYGNRDLrtygERVFARSVAYLPQDVTTGS 103
Cdd:PLN03211 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKP----TKQILKRTGFVTQDDILYP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 104 EMTVRE-LVGCG--RYPwhgalGRFTKNDEGKVEEALRATY-IEKFADRIVGT-----LSGGERQRAWIA--MLIaqDAR 172
Cdd:PLN03211 154 HLTVREtLVFCSllRLP-----KSLTKQEKILVAESVISELgLTKCENTIIGNsfirgISGGERKRVSIAheMLI--NPS 226
|
170 180 190
....*....|....*....|....*....|....*....
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLH 211
Cdd:PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMH 264
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
29-254 |
7.17e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 67.18 E-value: 7.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEI--LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYgnRDLRTYGERVFARSVAY-LPQDVTTGSEM 105
Cdd:PRK13631 37 NELvaLNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV--GDIYIGDKKNNHELITNpYSKKIKNFKEL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 tvRELVG-CGRYPWHG---------------ALGRfTKNDEGKveeaLRATYIEK------FADRIVGTLSGGERQRAWI 163
Cdd:PRK13631 115 --RRRVSmVFQFPEYQlfkdtiekdimfgpvALGV-KKSEAKK----LAKFYLNKmglddsYLERSPFGLSGGQKRRVAI 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 164 AMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRlAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILAP 243
Cdd:PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266
|
250
....*....|.
gi 648497063 244 NTLQEIYGIDM 254
Cdd:PRK13631 267 QHIINSTSIQV 277
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
31-211 |
1.36e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 64.97 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYG----NRDLRTYgervfARSVAYLPQDVTTGSEMT 106
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFErqsiKKDLCTY-----QKQLCFVGHRSGINPYLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRElvGCgRYPWH---GALGrftkndegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:PRK13540 91 LRE--NC-LYDIHfspGAVG---------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180 190
....*....|....*....|....*....|
gi 648497063 184 DvahQIEVLSLVRRL-AHEL-GSSVVIVLH 211
Cdd:PRK13540 159 D---ELSLLTIITKIqEHRAkGGAVLLTSH 185
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
34-240 |
2.01e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 66.80 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFA---RSVAYLPQDVTtgSEMTVREL 110
Cdd:PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQalrRDIQFIFQDPY--ASLDPRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCG-RYPW--HGALgrftkndEGKVEEALRATYIEKF------ADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:PRK10261 420 VGDSiMEPLrvHGLL-------PGKAAAARVAWLLERVgllpehAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 182 ALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAI 240
Cdd:PRK10261 493 ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
35-241 |
3.17e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 66.09 E-value: 3.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGnrdlrtyGERVFARS--------VAYLPQD------VT 100
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD-------GKPIDIRSprdairagIMLCPEDrkaegiIP 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 TGSemtVRELVGCGRYPWHGALGRFTKNdegKVEEALRATYIEKF------ADRIVGTLSGGERQRAWIAMLIAQDARCL 174
Cdd:PRK11288 345 VHS---VADNINISARRHHLRAGCLINN---RWEAENADRFIRSLniktpsREQLIMNLSGGNQQKAILGRWLSEDMKVI 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 175 LLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINMAARFCDRIHALKRGRVV-----ASGTPSAIL 241
Cdd:PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAgelarEQATERQAL 489
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
41-232 |
3.56e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.13 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 41 AGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYgNRDLRtygervfarsVAYLPQDVTTGSEMTVRELVGCG------ 114
Cdd:PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY-EQDLI----------VARLQQDPPRNVEGTVYDFVAEGieeqae 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 ---RYpwHgALGRFTKNDE--------GKVEEALRATYIEKFADRI--------------VGTLSGGERQRAWIAMLIAQ 169
Cdd:PRK11147 97 ylkRY--H-DISHLVETDPseknlnelAKLQEQLDHHNLWQLENRInevlaqlgldpdaaLSSLSGGWLRKAALGRALVS 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 170 DARCLLLDEPTAALDVAhQIEVLslvRRLAHELGSSVVIVLHD---I-NMAARFCDrihaLKRGRVV 232
Cdd:PRK11147 174 NPDVLLLDEPTNHLDIE-TIEWL---EGFLKTFQGSIIFISHDrsfIrNMATRIVD----LDRGKLV 232
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
30-242 |
6.23e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 64.04 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrTYGERVF-ARSVAYLPQDVTTGseMTVR 108
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYrSQRIRMIFQDPSTS--LNPR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVG-CGRYPWHGALGRFTKNDEGKVEEALRAT-YIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVA 186
Cdd:PRK15112 104 QRISqILDFPLRLNTDLEPEQREKQIIETLRQVgLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 187 HQIEVLSLVRRLAHELGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK15112 184 MRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
31-245 |
7.03e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.38 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSemtvrel 110
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS------- 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 vGCGRYpwhgALGRFTKNDEGKVEEALRATYIEKFADRIVGTL-----------SGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:PLN03232 1324 -GTVRF----NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLdaevseggenfSVGQRQLLSLARALLRRSKILVLDEA 1398
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 180 TAALDVahqiEVLSLVRRLAHELGSS--VVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPNT 245
Cdd:PLN03232 1399 TASVDV----RTDSLIQRTIREEFKSctMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDT 1461
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
42-236 |
1.05e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.03 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFaRSVAYLPQDVTTGSEMTVRELVgcgrYPWHGA 121
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH-QNMGYCPQFDAIDDLLTGREHL----YLYARL 2039
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 122 LGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHE 201
Cdd:TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119
|
170 180 190
....*....|....*....|....*....|....*
gi 648497063 202 lGSSVVIVLHDINMAARFCDRIHALKRGRVVASGT 236
Cdd:TIGR01257 2120 -GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
30-236 |
1.17e-11 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 64.87 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQlvPSAGsisYGNRDLRTYG----ERVFARSVAYLPQDVTTGSEM 105
Cdd:PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YIEGDIRISGfpkkQETFARISGYCEQNDIHSPQV 968
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRE-LVgcgrypwHGALGRFTK--NDEGK---VEEALRATYIEKFADRIVGT-----LSGGERQRAWIAMLIAQDARCL 174
Cdd:PLN03140 969 TVREsLI-------YSAFLRLPKevSKEEKmmfVDEVMELVELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSII 1041
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 175 LLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLH--DINMAARFcDRIHALKR-GRVVASGT 236
Cdd:PLN03140 1042 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHqpSIDIFEAF-DELLLMKRgGQVIYSGP 1104
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
28-209 |
3.10e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 63.39 E-value: 3.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSemtv 107
Cdd:TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR-LLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS---- 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 relvgcgrypwhgalGRFTKN--------DEG--KV-EEALRATYIEKFADRIV-------GTLSGGERQRAWIAMLIAQ 169
Cdd:TIGR01271 1306 ---------------GTFRKNldpyeqwsDEEiwKVaEEVGLKSVIEQFPDKLDfvlvdggYVLSNGHKQLMCLARSILS 1370
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 648497063 170 DARCLLLDEPTAALD-VAHQIevlsLVRRLAHELGSSVVIV 209
Cdd:TIGR01271 1371 KAKILLLDEPSAHLDpVTLQI----IRKTLKQSFSNCTVIL 1407
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
20-235 |
6.05e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 60.96 E-value: 6.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLA--RQLVPSAGSISYGNRDLRTY------GERVFArS 91
Cdd:PRK09580 5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELspedraGEGIFM-A 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 92 VAYLPQDVTTGSEMTVRELVGCGR-YPWHGALGRFTKNDegKVEEALRATYI-EKFADRIVGT-LSGGERQRAWIAMLIA 168
Cdd:PRK09580 84 FQYPVEIPGVSNQFFLQTALNAVRsYRGQEPLDRFDFQD--LMEEKIALLKMpEDLLTRSVNVgFSGGEKKRNDILQMAV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 169 QDARCLLLDEPTAALDvahqIEVLSLVRRLAHEL---GSSVVIVLHdinmAARFCDRI-----HALKRGRVVASG 235
Cdd:PRK09580 162 LEPELCILDESDSGLD----IDALKIVADGVNSLrdgKRSFIIVTH----YQRILDYIkpdyvHVLYQGRIVKSG 228
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
32-231 |
2.21e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.40 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ERVFARSVAYLPQD-----VTTGseM 105
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSpQDGLANGIVYISEDrkrdgLVLG--M 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCGrypwhgALGRFTKND---EGKVEEALRATYIEKF------ADRIVGTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK10762 346 SVKENMSLT------ALRYFSRAGgslKHADEQQAVSDFIRLFniktpsMEQAIGLLSGGNQQKVAIARGLMTRPKVLIL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 648497063 177 DEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
5-255 |
2.40e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.73 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 5 PPTQDPPRTAETFVAENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG 84
Cdd:TIGR00957 1275 PPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 85 ERVFARSVAYLPQDVTTGSemtvrelvGCGRYpwhgALGRFTKNDEGKVEEALRATYIEKFADRIVG-----------TL 153
Cdd:TIGR00957 1355 LHDLRFKITIIPQDPVLFS--------GSLRM----NLDPFSQYSDEEVWWALELAHLKTFVSALPDkldhecaeggeNL 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 154 SGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElgSSVVIVLHDINMAARFCdRIHALKRGRVVA 233
Cdd:TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED--CTVLTIAHRLNTIMDYT-RVIVLDKGEVAE 1499
|
250 260
....*....|....*....|..
gi 648497063 234 SGTPSAILAPNTLqeIYGIDMD 255
Cdd:TIGR00957 1500 FGAPSNLLQQRGI--FYSMAKD 1519
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
34-234 |
3.92e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 59.84 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPS-AGSISYGNR--DLRTYGERVfARSVAYLPQDVTTGSEMTVrel 110
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvDIRNPAQAI-RAGIAMVPEDRKRHGIVPI--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRYPWHGALGRFTK-------NDEGKVEEALRATYIEKFA-DRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAA 182
Cdd:TIGR02633 354 LGVGKNITLSVLKSFCFkmridaaAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 183 LDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:TIGR02633 434 VDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
42-227 |
4.00e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 4.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNrdlrtyGERVFARSVAYLPQDVTTGSEmtvrelvgcgrypwhga 121
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID------GEDILEEVLDQLLLIIVGGKK----------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 122 lgrftkndegkveealratyiekfadrivGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVR----- 196
Cdd:smart00382 59 -----------------------------ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEElrlll 109
|
170 180 190
....*....|....*....|....*....|....*..
gi 648497063 197 RLAHELGSSVVIV------LHDINMAARFCDRIHALK 227
Cdd:smart00382 110 LLKSEKNLTVILTtndekdLGPALLRRRFDRRIVLLL 146
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
32-234 |
5.34e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.42 E-value: 5.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLarqlvpsAGSISYGnrdlrTY-GERVF--------------ARSVAYLP 96
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVL-------SGVYPHG-----SYeGEILFdgevcrfkdirdseALGIVIIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 QDVTTGSEMTVRELVGCGRYP-------WHGALGRftkndegkVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQ 169
Cdd:NF040905 85 QELALIPYLSIAENIFLGNERakrgvidWNETNRR--------ARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 170 DARCLLLDEPTAAL---DVAHqieVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVAS 234
Cdd:NF040905 157 DVKLLILDEPTAALneeDSAA---LLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIET 220
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
29-236 |
7.51e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.22 E-value: 7.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSisygNRDLRTygervfarSVAYLPQdVTTGSEMTVR 108
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS----SVVIRG--------SVAYVPQ-VSWIFNATVR 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELVGCGrypwhgalgrfTKNDEGKVEEALRATYIEKFADRIVG-----------TLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PLN03232 697 ENILFG-----------SDFESERYWRAIDVTALQHDLDLLPGrdlteigergvNISGGQKQRVSMARAVYSNSDIYIFD 765
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 648497063 178 EPTAALD--VAHQIeVLSLVRrlaHEL-GSSVVIVLHDINMAARFcDRIHALKRGRVVASGT 236
Cdd:PLN03232 766 DPLSALDahVAHQV-FDSCMK---DELkGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGT 822
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
28-209 |
1.07e-09 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 57.56 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 28 GNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARqLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTV 107
Cdd:cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGRYpwhgalgrftkNDEG--KV-EEALRATYIEKFADRIVGT-------LSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:cd03289 95 KNLDPYGKW-----------SDEEiwKVaEEVGLKSVIEQFPGQLDFVlvdggcvLSHGHKQLMCLARSVLSKAKILLLD 163
|
170 180 190
....*....|....*....|....*....|...
gi 648497063 178 EPTAALD-VAHQIevlsLVRRLAHELGSSVVIV 209
Cdd:cd03289 164 EPSAHLDpITYQV----IRKTLKQAFADCTVIL 192
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
31-242 |
1.45e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 58.60 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEmTVRel 110
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVR-- 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 vgcgrypwhGALGRFTKNDEGKVEEALRATYIEKFADRIVGTL-----------SGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:PLN03130 1331 ---------FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLRRSKILVLDEA 1401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 648497063 180 TAALDVAHQIEVLSLVRRlahELGS-SVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILA 242
Cdd:PLN03130 1402 TAAVDVRTDALIQKTIRE---EFKScTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
32-237 |
1.58e-09 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 56.85 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLarqLVPSAGSISYGNRDLRTYGERV----FARSVAYLPQD--------- 98
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDT---LYPALARRLHLKKEQPGNHDRIegleHIDKVIVIDQSpigrtprsn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 99 --VTTGSEMTVRELV--GCgrypwHGAlgRFtkNDE-------GK---------VEEALRA-TYIEKFADRI-----VG- 151
Cdd:cd03271 88 paTYTGVFDEIRELFceVC-----KGK--RY--NREtlevrykGKsiadvldmtVEEALEFfENIPKIARKLqtlcdVGl 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 ----------TLSGGERQRAWIAMLIAQDA--RCL-LLDEPTAAL---DVAHQIEVL-SLVrrlahELGSSVVIVLHDIN 214
Cdd:cd03271 159 gyiklgqpatTLSGGEAQRIKLAKELSKRStgKTLyILDEPTTGLhfhDVKKLLEVLqRLV-----DKGNTVVVIEHNLD 233
|
250 260
....*....|....*....|....*....
gi 648497063 215 MaARFCDRIHAL------KRGRVVASGTP 237
Cdd:cd03271 234 V-IKCADWIIDLgpeggdGGGQVVASGTP 261
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
31-242 |
1.72e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 58.32 E-value: 1.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPS---AGSISYGNRDLRtygERVFARSVAYLPQ-DVTTGsEMT 106
Cdd:PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSlkvSGEITYNGYRLN---EFVPRKTSAYISQnDVHVG-VMT 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 107 VRELV-------GCG-RYPWHGALGRFTKN----DEGKVEEALRATYIEKF------------------ADRIVGT---- 152
Cdd:PLN03140 256 VKETLdfsarcqGVGtRYDLLSELARREKDagifPEAEVDLFMKATAMEGVksslitdytlkilgldicKDTIVGDemir 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 153 -LSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVI-VLHDINMAARFCDRIHALKRGR 230
Cdd:PLN03140 336 gISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMsLLQPAPETFDLFDDIILLSEGQ 415
|
250
....*....|..
gi 648497063 231 VVASGTPSAILA 242
Cdd:PLN03140 416 IVYQGPRDHILE 427
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
36-242 |
2.06e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 57.72 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 36 SLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGS----------ISY-------------GNRDLRTYGERVFARSV 92
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGErqsqfshitrLSFeqlqklvsdewqrNNTDMLSPGEDDTGRTT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 93 AYLPQDVTtgsemtvrelvgcgrypwhgalgrftkNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:PRK10938 103 AEIIQDEV---------------------------KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 173 CLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
31-211 |
3.05e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 57.43 E-value: 3.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA----GSISYGNRDLRTYgERVFARSVAYLPQ-DVTTGSeM 105
Cdd:TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHigveGVITYDGITPEEI-KKHYRGDVVYNAEtDVHFPH-L 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRE-LVGCGRypwhgalgrfTKNDEGKVEEALRATYIEKFADRIVGTL------------------SGGERQRAWIAML 166
Cdd:TIGR00956 154 TVGEtLDFAAR----------CKTPQNRPDGVSREEYAKHIADVYMATYglshtrntkvgndfvrgvSGGERKRVSIAEA 223
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 648497063 167 IAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLH 211
Cdd:TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIY 268
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
147-250 |
3.24e-09 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 57.33 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 147 DRIVGTLSGGERQRAWIAMLIAQDARCLL--LDEPTAALdvaHQIEVLSLVRRLAH--ELGSSVVIVLHD---INMAARF 219
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGL---HQRDNRRLINTLKRlrDLGNTLIVVEHDedtIRAADYV 559
|
90 100 110
....*....|....*....|....*....|....*..
gi 648497063 220 CD-----RIHAlkrGRVVASGTPSAILA-PNTLQEIY 250
Cdd:TIGR00630 560 IDigpgaGEHG---GEVVASGTPEEILAnPDSLTGQY 593
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
32-189 |
3.62e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 57.06 E-value: 3.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGsisygnrdlrtyGERVFARSVAYLPQdVTTGSEMTVRELV 111
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD------------ASVVIRGTVAYVPQ-VSWIFNATVRDNI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRyPWhgalgrftknDEGKVEEALRATYIEKFADRIVG-----------TLSGGERQRAWIAMLIAQDARCLLLDEPT 180
Cdd:PLN03130 700 LFGS-PF----------DPERYERAIDVTALQHDLDLLPGgdlteigergvNISGGQKQRVSMARAVYSNSDVYIFDDPL 768
|
170
....*....|.
gi 648497063 181 AALD--VAHQI 189
Cdd:PLN03130 769 SALDahVGRQV 779
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
31-231 |
4.11e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 56.72 E-value: 4.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYgervFAR-SVAYLPQDVTtgsemtvre 109
Cdd:PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGY----FAQhQLEFLRADES--------- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 lvgcgrypwhgALGRFTKNDEGKVEEALRaTYIEKFADR------IVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAAL 183
Cdd:PRK10636 394 -----------PLQHLARLAPQELEQKLR-DYLGGFGFQgdkvteETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 648497063 184 DV-AHQIEVLSLVrrlahELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK10636 462 DLdMRQALTEALI-----DFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
44-212 |
4.41e-09 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 54.92 E-value: 4.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 44 VVALVGHNGSGKSSLLKmlarqlvpsagSISYGnrdlrTYGE-RVFARSVAYLPQDVTTGSEMTVRELvgcgrypwhgal 122
Cdd:cd03240 24 LTLIVGQNGAGKTTIIE-----------ALKYA-----LTGElPPNSKGGAHDPKLIREGEVRAQVKL------------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 123 gRFtKNDEGKVEEALR-------ATY-----IEKFADRIVGTLSGGERQ------RAWIAMLIAQDARCLLLDEPTAALD 184
Cdd:cd03240 76 -AF-ENANGKKYTITRslailenVIFchqgeSNWPLLDMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLD 153
|
170 180
....*....|....*....|....*....
gi 648497063 185 VAHQIEVLS-LVRRLAHELGSSVVIVLHD 212
Cdd:cd03240 154 EENIEESLAeIIEERKSQKNFQLIVITHD 182
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
9-198 |
4.55e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 55.24 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 9 DPPRTAETFVAENiGLLIEGNE--ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTyGER 86
Cdd:PRK13543 3 EPLHTAPPLLAAH-ALAFSRNEepVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR-GDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 87 vfARSVAYLPQDVTTGSEMTVRELVG--CGRYpwhgalGRFTKNDEGKveeALRATYIEKFADRIVGTLSGGERQRAWIA 164
Cdd:PRK13543 81 --SRFMAYLGHLPGLKADLSTLENLHflCGLH------GRRAKQMPGS---ALAIVGLAGYEDTLVRQLSAGQKKRLALA 149
|
170 180 190
....*....|....*....|....*....|....
gi 648497063 165 MLIAQDARCLLLDEPTAALDvahqIEVLSLVRRL 198
Cdd:PRK13543 150 RLWLSPAPLWLLDEPYANLD----LEGITLVNRM 179
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
147-246 |
1.01e-08 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 55.80 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 147 DRIVGTLSGGERQRawIAMliaqdARCL---------LLDEPTAALdvaHQ------IEVLslvRRLAhELGSSVVIVLH 211
Cdd:COG0178 480 DRSAGTLSGGEAQR--IRL-----ATQIgsglvgvlyVLDEPSIGL---HQrdndrlIETL---KRLR-DLGNTVIVVEH 545
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 648497063 212 D--INMAArfcDRI---------HAlkrGRVVASGTPSAILA-PNTL 246
Cdd:COG0178 546 DedTIRAA---DYIidigpgageHG---GEVVAQGTPEEILKnPDSL 586
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
29-242 |
1.33e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 55.10 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 29 NEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVR 108
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 109 ELvgcgrypwhgALGRFTKNDEgKVEEALRAT------------YIEKFADRIVgTLSGGERQRAWIAMLIAQDARCLLL 176
Cdd:PRK10789 408 NI----------ALGRPDATQQ-EIEHVARLAsvhddilrlpqgYDTEVGERGV-MLSGGQKQRISIARALLLNAEILIL 475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648497063 177 DEPTAALD--VAHQIevLSLVRRLAHelGSSVVIVLHDINmAARFCDRIHALKRGRVVASGTPSAILA 242
Cdd:PRK10789 476 DDALSAVDgrTEHQI--LHNLRQWGE--GRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
35-212 |
1.83e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 54.90 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYgnrdlrTYGERvfarsVAYLPQDVTTGSEMTVRELVGCG 114
Cdd:PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL------DPNER-----LGKLRQDQFAFEEFTVLDTVIMG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 115 rypwHGAL-------GRFTKNDEGKVEEALRATYIE-KFAD--------RIVGTLSG---GERQR---------AW-IAM 165
Cdd:PRK15064 89 ----HTELwevkqerDRIYALPEMSEEDGMKVADLEvKFAEmdgytaeaRAGELLLGvgiPEEQHyglmsevapGWkLRV 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 648497063 166 LIAQ----DARCLLLDEPTAALDVaHQIevlslvRRLAHEL---GSSVVIVLHD 212
Cdd:PRK15064 165 LLAQalfsNPDILLLDEPTNNLDI-NTI------RWLEDVLnerNSTMIIISHD 211
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
32-229 |
2.43e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.10 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYG-ERVFAR---SVAYLPQDVTTgSEMTV 107
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSfEATRSRnrySVAYAAQKPWL-LNATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 108 RELVGCGrypwhgalGRFTKNDEGKVEEALRATY---IEKFADRI-VG----TLSGGERQRAWIAMLIAQDARCLLLDEP 179
Cdd:cd03290 96 EENITFG--------SPFNKQRYKAVTDACSLQPdidLLPFGDQTeIGergiNLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 648497063 180 TAALDVAHQIEVLSL-VRRLAHELGSSVVIVLHDINMAARfCDRIHALKRG 229
Cdd:cd03290 168 FSALDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
34-231 |
3.27e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 54.10 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 34 DVSLKFPAGEV--------------VALVGHNGSGKSSLLKMLARQLVPSAGSIsygnrdLRTYGERvfarsVAYLPQDV 99
Cdd:PLN03073 513 DASFGYPGGPLlfknlnfgidldsrIAMVGPNGIGKSTILKLISGELQPSSGTV------FRSAKVR-----MAVFSQHH 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRELVGCGR-YPwhgalgrftkndeGKVEEALRAtYIEKF------ADRIVGTLSGGERQRAWIAMLIAQDAR 172
Cdd:PLN03073 582 VDGLDLSSNPLLYMMRcFP-------------GVPEQKLRA-HLGSFgvtgnlALQPMYTLSGGQKSRVAFAKITFKKPH 647
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 173 CLLLDEPTAALDVAhqiEVLSLVRRLAHELGsSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PLN03073 648 ILLLDEPSNHLDLD---AVEALIQGLVLFQG-GVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
32-244 |
6.87e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.41 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISygnrdlrtygervFARSVAYLPQDVTTGSEmTVRE-- 109
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-------------MKGSVAYVPQQAWIQND-SLREni 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 110 LVGCGRYPwhgalgrftkNDEGKVEEA---LRATYIEKFADRI-VG----TLSGGERQRAWIAMLIAQDARCLLLDEPTA 181
Cdd:TIGR00957 720 LFGKALNE----------KYYQQVLEAcalLPDLEILPSGDRTeIGekgvNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 648497063 182 ALD--VAHQI--EVLSLVRRLAhelGSSVVIVLHDINMAARfCDRIHALKRGRVVASGTPSAILAPN 244
Cdd:TIGR00957 790 AVDahVGKHIfeHVIGPEGVLK---NKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQRD 852
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
31-237 |
7.19e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 53.24 E-value: 7.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYLPQDVTTgSEMTVREL 110
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVL-FDGTVRQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGcgryPwhgalgrFTKNDEGKVEEALRATYI-EKFADRIVG----TLSGGER----QRAWIAM---LIAQDARCLLLDE 178
Cdd:PTZ00243 1404 VD----P-------FLEASSAEVWAALELVGLrERVASESEGidsrVLEGGSNysvgQRQLMCMaraLLKKGSGFILMDE 1472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 648497063 179 PTAALDVA--HQIEVLSLVRRLAHelgsSVVIVLHDINMAARfCDRIHALKRGRVVASGTP 237
Cdd:PTZ00243 1473 ATANIDPAldRQIQATVMSAFSAY----TVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSP 1528
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
121-231 |
8.00e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 52.62 E-value: 8.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 121 ALGRFTKNdeGKVEEALRATYIEKFADRI----------VGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIE 190
Cdd:PRK13549 366 ALDRFTGG--SRIDDAAELKTILESIQRLkvktaspelaIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 648497063 191 VLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK13549 444 IYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
31-233 |
1.01e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 52.48 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLlkmlarqlvpsAGSI---SYGNR---DLRTYGERVFARSV--------AYLP 96
Cdd:NF040905 275 VVDDVSLNVRRGEIVGIAGLMGAGRTEL-----------AMSVfgrSYGRNisgTVFKDGKEVDVSTVsdaidaglAYVT 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 97 QDVTTGS---EMTVRE---LVGCGRYPWHGALgrfTKNDEGKVEEALRATYIEKFA--DRIVGTLSGGERQRAWIAMLIA 168
Cdd:NF040905 344 EDRKGYGlnlIDDIKRnitLANLGKVSRRGVI---DENEEIKVAEEYRKKMNIKTPsvFQKVGNLSGGNQQKVVLSKWLF 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648497063 169 QDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHD----INMaarfCDRIHALKRGRVVA 233
Cdd:NF040905 421 TDPDVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSElpelLGM----CDRIYVMNEGRITG 484
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
20-184 |
1.12e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.03 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEgNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLrtygERVFARSVAYLPQDV 99
Cdd:PRK13541 5 HQLQFNIE-QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI----NNIAKPYCTYIGHNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 100 TTGSEMTVRElvgcgrypwhgALGRFTK--NDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLD 177
Cdd:PRK13541 80 GLKLEMTVFE-----------NLKFWSEiyNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD 148
|
....*..
gi 648497063 178 EPTAALD 184
Cdd:PRK13541 149 EVETNLS 155
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
20-253 |
1.81e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 50.80 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 20 ENIGLLIEGNEILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQlvPS----AGSISYGNRDL--RTYGERvfARSVA 93
Cdd:CHL00131 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAykilEGDILFKGESIldLEPEER--AHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 94 YL----PQDVTTGSEMTVRELVgcgrypwHGALGRFTKNDEGKVEEALraTYI----------EKFADRIVGT-LSGGER 158
Cdd:CHL00131 87 FLafqyPIEIPGVSNADFLRLA-------YNSKRKFQGLPELDPLEFL--EIIneklklvgmdPSFLSRNVNEgFSGGEK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 159 QRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHdinmAARFCDRI-----HALKRGRVVA 233
Cdd:CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM-TSENSIILITH----YQRLLDYIkpdyvHVMQNGKIIK 232
|
250 260
....*....|....*....|
gi 648497063 234 SGtpSAILApNTLqEIYGID 253
Cdd:CHL00131 233 TG--DAELA-KEL-EKKGYD 248
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
35-78 |
1.93e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 51.72 E-value: 1.93e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 648497063 35 VSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNR 78
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQ 394
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
127-235 |
5.51e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 50.12 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 127 KNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSV 206
Cdd:NF000106 119 KDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATV 197
|
90 100
....*....|....*....|....*....
gi 648497063 207 VIVLHDINMAARFCDRIHALKRGRVVASG 235
Cdd:NF000106 198 LLTTQYMEEAEQLAHELTVIDRGRVIADG 226
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
152-237 |
8.66e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.01 E-value: 8.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 TLSGGERQRAWIAMLIAQDA--RCL-LLDEPTAAL---DVAHQIEVLslvRRLAHeLGSSVVIVLH--DINMAArfcDRI 223
Cdd:TIGR00630 829 TLSGGEAQRIKLAKELSKRStgRTLyILDEPTTGLhfdDIKKLLEVL---QRLVD-KGNTVVVIEHnlDVIKTA---DYI 901
|
90 100
....*....|....*....|
gi 648497063 224 HAL------KRGRVVASGTP 237
Cdd:TIGR00630 902 IDLgpeggdGGGTVVASGTP 921
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
30-226 |
9.13e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.03 E-value: 9.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 30 EILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSI----SYGNRDLRTYGER-----------VFARSVA- 93
Cdd:PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIiindSHNLKDINLKWWRskigvvsqdplLFSNSIKn 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 94 ------YLPQDV----------TTGSEMTVRELVGCgRYPWHGALGRFTKN----------------DEGKVEEALRATY 141
Cdd:PTZ00265 479 nikyslYSLKDLealsnyynedGNDSQENKNKRNSC-RAKCAGDLNDMSNTtdsneliemrknyqtiKDSEVVDVSKKVL 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 142 IEKFA-------DRIVGT----LSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVL 210
Cdd:PTZ00265 558 IHDFVsalpdkyETLVGSnaskLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
|
250
....*....|....*.
gi 648497063 211 HDINmAARFCDRIHAL 226
Cdd:PTZ00265 638 HRLS-TIRYANTIFVL 652
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
147-246 |
1.00e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 49.69 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 147 DRIVGTLSGGERQRAWIA----------MLIaqdarcllLDEPTAALdvaHQIEVLSLVRRLAH--ELGSSVVIVLHD-- 212
Cdd:PRK00349 484 SRSAGTLSGGEAQRIRLAtqigsgltgvLYV--------LDEPSIGL---HQRDNDRLIETLKHlrDLGNTLIVVEHDed 552
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 648497063 213 -InMAArfcDRI---------HAlkrGRVVASGTPSAILA-PNTL 246
Cdd:PRK00349 553 tI-RAA---DYIvdigpgagvHG---GEVVASGTPEEIMKnPNSL 590
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
152-242 |
1.56e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 48.87 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 TLSGGERQRAWIAMLIAQDA--RCL-LLDEPTAAL---DVAHQIEVLslvRRLAhELGSSVVIVLHD---INMAarfcDR 222
Cdd:COG0178 826 TLSGGEAQRVKLASELSKRStgKTLyILDEPTTGLhfhDIRKLLEVL---HRLV-DKGNTVVVIEHNldvIKTA----DW 897
|
90 100
....*....|....*....|....*.
gi 648497063 223 IHAL------KRGRVVASGTPSAILA 242
Cdd:COG0178 898 IIDLgpeggdGGGEIVAEGTPEEVAK 923
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
147-242 |
1.67e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 49.06 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 147 DRIVGTLSGGERQRAWIAMLIAQDARCL--LLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAArFCDRI- 223
Cdd:PRK00635 471 ERALATLSGGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDEQMIS-LADRIi 548
|
90 100
....*....|....*....|....
gi 648497063 224 -----HALKRGRVVASGTPSAILA 242
Cdd:PRK00635 549 digpgAGIFGGEVLFNGSPREFLA 572
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
32-235 |
2.00e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 47.64 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSL----------------LKMLARQLVPSAG------------SIS----YGNRD 79
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLafdtiyaegqrryvesLSAYARQFLGQMDkpdvdsieglspAIAidqkTTSRN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 80 LRT----------YGERVFARsvaylpqdvtTGSEMTVRELVGCGrypwhgaLGRFTkndegkveealratyiekfADRI 149
Cdd:cd03270 91 PRStvgtvteiydYLRLLFAR----------VGIRERLGFLVDVG-------LGYLT-------------------LSRS 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 150 VGTLSGGERQRAWIAMLIAQDARCLL--LDEPTAALdvaHQIEVLSLVRRLAH--ELGSSVVIVLHD---INMAARFCD- 221
Cdd:cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGL---HPRDNDRLIETLKRlrDLGNTVLVVEHDedtIRAADHVIDi 211
|
250
....*....|....*...
gi 648497063 222 ----RIHAlkrGRVVASG 235
Cdd:cd03270 212 gpgaGVHG---GEIVAQG 226
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
32-231 |
2.20e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 48.35 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISygnrdlrtygervfARSVAYLpqdVTTGSEMTvRELV 111
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD--------------IKGSAAL---IAISSGLN-GQLT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 GCGRYPWHGALGRFTKNDEGKV-EEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEptaALDVAHQIE 190
Cdd:PRK13545 102 GIENIELKGLMMGLTKEKIKEIiPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE---ALSVGDQTF 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 648497063 191 VLSLVRRLAH--ELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK13545 179 TKKCLDKMNEfkEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
21-215 |
4.83e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.78 E-value: 4.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 21 NIGLLIEGNeiLRDVSLKFPAGEVVALVGHNGSGKSSLLKmlarqlvpsAGSISYGNRDLRTYGERVFARSVAYLPQdvt 100
Cdd:cd03238 2 TVSGANVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------EGLYASGKARLISFLPKFSRNKLIFIDQ--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 101 tgsemtvrelvgcgrypwhgaLGRFTKNDEGkveealratYIEkfADRIVGTLSGGERQRAWIAMLIAQDAR--CLLLDE 178
Cdd:cd03238 68 ---------------------LQFLIDVGLG---------YLT--LGQKLSTLSGGELQRVKLASELFSEPPgtLFILDE 115
|
170 180 190
....*....|....*....|....*....|....*..
gi 648497063 179 PTAALDVAHQIEVLSLVRRLAhELGSSVVIVLHDINM 215
Cdd:cd03238 116 PSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNLDV 151
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
150-231 |
6.31e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.03 E-value: 6.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 150 VGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLHDINMAARFCDRIHALKRG 229
Cdd:PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNG 467
|
..
gi 648497063 230 RV 231
Cdd:PRK10982 468 LV 469
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
32-231 |
1.24e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 45.58 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGsisygnrDLRTYGERVFARSVAYLPQDVTTGSEMTVRELV 111
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-------KVDRNGEVSVIAISAGLSGQLTGIENIEFKMLC 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 112 gcgrypwhgaLGRFTKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEptaALDVAHQIEV 191
Cdd:PRK13546 113 ----------MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648497063 192 LSLVRRLAH--ELGSSVVIVLHDINMAARFCDRIHALKRGRV 231
Cdd:PRK13546 180 QKCLDKIYEfkEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
36-211 |
1.25e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 45.14 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 36 SLKFPAGeVVALVGHNGSGKSSLLKMLARQL-VPSAGSisYGNRDLRTYgervfaRSVAYLPQDVTtgsemtvreLV-GC 113
Cdd:COG3910 32 GLEFHPP-VTFFVGENGSGKSTLLEAIAVAAgFNPEGG--SKNFRFSTR------ESESALGEYLR---------LSrGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 114 GRYPWhgalGRFtkndegkveeaLRA-------TYIEKFADRIVGTLS--GGERQRAW------IAMLiaqDARC----- 173
Cdd:COG3910 94 PKPRD----GFF-----------LRAesffnvaTYLDELAAEGPGILDsyGGRSLHEQshgesfLALF---ENRFrgngl 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 648497063 174 LLLDEPTAALDVAHQIEVLSLVRRLAHElGSSVVIVLH 211
Cdd:COG3910 156 YLLDEPEAALSPSRQLALLALIHDLVRE-GSQFIIATH 192
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
152-240 |
5.02e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 44.29 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 TLSGGERQRAWIAMLIAQDA--RCL-LLDEPTAAL---DVAHQIEVL-SLVrrlahELGSSVVIVLHDINMAaRFCDRIH 224
Cdd:PRK00349 830 TLSGGEAQRVKLAKELSKRStgKTLyILDEPTTGLhfeDIRKLLEVLhRLV-----DKGNTVVVIEHNLDVI-KTADWII 903
|
90 100
....*....|....*....|..
gi 648497063 225 AL------KRGRVVASGTPSAI 240
Cdd:PRK00349 904 DLgpeggdGGGEIVATGTPEEV 925
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
148-245 |
1.13e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.28 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 148 RIVGTLSGGERQRAWIA--MLIAQDARCL-LLDEPTAAL---DVAHQIEVL-SLVrrlahELGSSVVIVLHDINMaARFC 220
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAyeLLAPSKKPTLyVLDEPTTGLhthDIKALIYVLqSLT-----HQGHTVVIIEHNMHV-VKVA 878
|
90 100 110
....*....|....*....|....*....|.
gi 648497063 221 DRIHAL------KRGRVVASGTPSAILAPNT 245
Cdd:PRK00635 879 DYVLELgpeggnLGGYLLASCSPEELIHLHT 909
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
31-228 |
1.31e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.58 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 31 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKmlarqlvpsagSISYGnrdlrtygerVFARSVAYLPQDVttgsemtvrEL 110
Cdd:cd03227 10 YFVPNDVTFGEGSLTIITGPNGSGKSTILD-----------AIGLA----------LGGAQSATRRRSG---------VK 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 111 VGCGRypwhgalgrftkndegkveealraTYIEKFADRIVGTLSGGERQRAWIAMLIA----QDARCLLLDEPTAALDVA 186
Cdd:cd03227 60 AGCIV------------------------AAVSAELIFTRLQLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPR 115
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 648497063 187 HQIEVLSLVRRLAHElGSSVVIVLHDINMAARFcDRIHALKR 228
Cdd:cd03227 116 DGQALAEAILEHLVK-GAQVIVITHLPELAELA-DKLIHIKK 155
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
32-74 |
4.47e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 40.75 E-value: 4.47e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 648497063 32 LRDVSLKFPAGE-VVALVGHNGSGKSSLLKMLARQLVPSAGSIS 74
Cdd:COG3950 14 FEDLEIDFDNPPrLTVLVGENGSGKTTLLEAIALALSGLLSRLD 57
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
42-185 |
5.47e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.92 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 42 GEVVALVGHNGSGKSSLLKMLARQLVPSAGSISY-GNRDLRTYGERVFARSVAYLpqDVTTGSEMTVRELvgcgrypwHG 120
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFpGNWQLAWVNQETPALPQPAL--EYVIDGDREYRQL--------EA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 121 ALGRFT-KND-------EGKVeEALRATYIEKFA--------------DRIVGTLSGGERQRAWIAMLIAQDARCLLLDE 178
Cdd:PRK10636 97 QLHDANeRNDghaiatiHGKL-DAIDAWTIRSRAasllhglgfsneqlERPVSDFSGGWRMRLNLAQALICRSDLLLLDE 175
|
....*..
gi 648497063 179 PTAALDV 185
Cdd:PRK10636 176 PTNHLDL 182
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
32-215 |
1.37e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 39.53 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFpaGEVVALVGHNGSGKSSL------LKMLARQLVPSAGSISYGNRDLRTYGERVFARSVAYlpqdvttgsEM 105
Cdd:COG4637 13 LRDLELPL--GPLTVLIGANGSGKSNLldalrfLSDAARGGLQDALARRGGLEELLWRGPRTITEPIRL---------EL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 106 TVRELVGCgRYPWHGALGRFTKNDEGKV-EEALRATYIEK----FADRIVGTLSGGERQRawiamliaqdarcllLDEPT 180
Cdd:COG4637 82 EFAEEDER-DLRYELELGLPEPGGRPEVkEERLWLKRGSGgrpfLDFRPKGRAVGGEPER---------------LDSPE 145
|
170 180 190
....*....|....*....|....*....|....*
gi 648497063 181 AALDVAHQIEVLSLVRRLAHELGSSVVIVLHDINM 215
Cdd:COG4637 146 SLLSQLGDPERFPELRALREALRSWRFYDFHPAPL 180
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
32-66 |
2.53e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 39.29 E-value: 2.53e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 648497063 32 LRDVSLKFPAGEVVALVGHNGSGKSSLL-----KMLARQL 66
Cdd:PRK00349 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLInetlyKALARKL 664
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
32-60 |
2.56e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 38.83 E-value: 2.56e-03
10 20
....*....|....*....|....*....
gi 648497063 32 LRDVSLKFPAGeVVALVGHNGSGKSSLLK 60
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILE 41
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-83 |
2.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 2.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 648497063 40 PAGEVVALVGHNGSGKSSLLKMLARQLVP--------SAGSISYGNRDLRTY 83
Cdd:COG4913 22 FDGRGTLLTGDNGSGKSTLLDAIQTLLVPakrprfnkAANDAGKSDRTLLSY 73
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
152-237 |
3.90e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 38.47 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648497063 152 TLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAHQIEVLSLVRRLAHELGSSVVIVLHdinmaarfcdRIHALKRG-R 230
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH----------RIASIKRSdK 1427
|
....*..
gi 648497063 231 VVASGTP 237
Cdd:PTZ00265 1428 IVVFNNP 1434
|
|
| EF-G_bact |
cd04170 |
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). ... |
45-77 |
4.73e-03 |
|
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members.
Pssm-ID: 206733 [Multi-domain] Cd Length: 268 Bit Score: 37.57 E-value: 4.73e-03
10 20 30
....*....|....*....|....*....|....*
gi 648497063 45 VALVGHNGSGKSSLLKMLARQ--LVPSAGSISYGN 77
Cdd:cd04170 2 IALVGHSGSGKTTLAEALLYAtgAIDRLGRVEDGN 36
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
32-73 |
5.43e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 38.03 E-value: 5.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 648497063 32 LRDVSLKFPA--------------GEVVALVGHNGSGKSSLLKMLARQLVPSAGSI 73
Cdd:PRK10522 325 LRNVTFAYQDngfsvgpinltikrGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
|
|
| |
